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Emmanuelle Maguin

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Design of a proteolytic module for improved metabolic modeling of Bacteroides caccae

Amandine Paulay , Ghjuvan M Grimaud , Raphaël Caballero , Béatrice Laroche , Marion Leclerc
mSystems, 2024, 9 (4), ⟨10.1128/msystems.00153-24⟩
Journal articles hal-04540116v1
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Characterization of Two Parabacteroides distasonis Candidate Strains as New Live Biotherapeutics against Obesity

Bernardo Cuffaro , Denise Boutillier , Jérémy Desramaut , Amin Jablaoui , Elisabeth Werkmeister
Cells, 2023, 12 (9), pp 1260. ⟨10.3390/cells12091260⟩
Journal articles hal-04259121v1

Fate, uptake and gut toxicity of two colloidal silver products in mice: how micro X-ray fluorescence, micro X-ray absorption spectroscopy and near-infrared spectroscopy provide new insights in food nanotoxicology

Kevin Gillois , Camille Rivard , Cecile Levasseur-Garcia , Valérie Bézirard , Helene Terrisse
Environmental science‎.Nano, 2023, 10 (3), pp.909-921. ⟨10.1039/d2en01135b⟩
Journal articles hal-04011767v1
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Domestic Environment and Gut Microbiota: Lessons from Pet Dogs

Juan Hernandez , Soufien Rhimi , Aicha Kriaa , Vincent Mariaule , Houda Boudaya
Microorganisms, 2022, 10 (5), pp.1-17. ⟨10.3390/microorganisms10050949⟩
Journal articles hal-03811748v1
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The Nexus of Diet, Gut Microbiota and Inflammatory Bowel Diseases in Dogs

Soufien Rhimi , Aicha Kriaa , Vincent Mariaule , Amel Saidi , Amandine Drut
Metabolites, 2022, 12 (12), pp.1176. ⟨10.3390/metabo12121176⟩
Journal articles hal-04092613v1
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Bile Acids: Key Players in Inflammatory Bowel Diseases?

Aicha Kriaa , Vincent Mariaule , Amin Jablaoui , Soufien Rhimi , Hela Mkaouar
Cells, 2022, 11 (5), pp.1-10. ⟨10.3390/cells11050901⟩
Journal articles hal-03812120v1

Identification of New Potential Biotherapeutics from Human Gut Microbiota-Derived Bacteria

Bernardo Cuffaro , Aka Assohoun , Denise Boutillier , Véronique Peucelle , Jérémy Desramaut
Microorganisms, 2021, 9 (3), pp. 565. ⟨10.3390/microorganisms9030565⟩
Journal articles hal-04395276v1

Microbiome innovations for a sustainable future

Kathleen D’hondt , Tanja Kostic , Richard Mcdowell , Francois Eudes , Brajesh Singh
Nature Microbiology, 2021, 6 (2), pp.138-142. ⟨10.1038/s41564-020-00857-w⟩
Journal articles hal-04396063v1
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Digestive Inflammation: Role of Proteolytic Dysregulation

Vincent Mariaule , Aicha Kriaa , Souha Soussou , Soufien Rhimi , Houda Boudaya
International Journal of Molecular Sciences, 2021, 22 (6), pp.2817. ⟨10.3390/ijms22062817⟩
Journal articles hal-04259169v1
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Development of Microbiome Biobanks -Challenges and Opportunities

M.J. Ryan , M. Schloter , G. Berg , T. Kostic , L.L. Kinkel
Trends in Microbiology, 2021, 29 (2), pp.1-6. ⟨10.1016/j.tim.2020.06.009⟩
Journal articles hal-03824619v1

Tolerogenic Dendritic Cells Shape a Transmissible Gut Microbiota that Protects from Metabolic Diseases

Emelyne Lécuyer , Tiphaine Le Roy , Aurélie Gestin , Amélie Lacombe , Catherine Philippe
Diabetes, 2021, 70 (9), p. 2067-2080. ⟨10.2337/db20-1177⟩
Journal articles hal-03252103v1
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Gut Serpinome: Emerging Evidence in IBD

Héla Mkaouar , Vincent Mariaule , Soufien Rhimi , Juan Hernandez , Aicha Kriaa
International Journal of Molecular Sciences, 2021, 22 (11), pp.6088. ⟨10.3390/ijms22116088⟩
Journal articles hal-03372010v1
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Multiple Selection Criteria for Probiotic Strains with High Potential for Obesity Management

Jeanne Alard , Benoit Cudennec , Denise Boutillier , Véronique Peucelle , Amandine Descat
Nutrients, 2021, 13 (3), pp.713. ⟨10.3390/nu13030713⟩
Journal articles hal-03447633v1

Bile Salt Hydrolases: At the Crossroads of Microbiota and Human Health

Mélanie Bourgin , Aicha Kriaa , Héla Mkaouar , Vincent Mariaule , Amin Jablaoui
Microorganisms, 2021, 9 (6), pp. 1122. ⟨10.3390/microorganisms9061122⟩
Journal articles hal-03371108v1

Microbiome innovations for a sustainable future

Kathleen D’hondt , Tanja Kostic , Richard Mcdowell , Francois Eudes , Brajesh Singh
Nature Microbiology, 2021, 6 (2), pp.138-142. ⟨10.1038/s41564-020-00857-w⟩
Journal articles hal-03372011v1
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SP-1, a Serine Protease from the Gut Microbiota, Influences Colitis and Drives Intestinal Dysbiosis in Mice

Aicha Kriaa , Amin Jablaoui , Soufien Rhimi , Souha Soussou , Héla Mkaouar
Cells, 2021, 10, pp.1-21. ⟨10.3390/cells10102658⟩
Journal articles hal-03814093v1
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In Vitro Characterization of Gut Microbiota-Derived Commensal Strains: Selection of Parabacteroides distasonis Strains Alleviating TNBS-Induced Colitis in Mice

Bernardo Cuffaro , Aka L. W. Assohoun , Denise Boutillier , Lenka Súkeníková , Jérémy Desramaut
Cells, 2020, 9 (9), pp.2104. ⟨10.3390/cells9092104⟩
Journal articles hal-03332194v1

Fat‐Shaped microbiota affects lipid metabolism, Liver Steatosis, and intestinal homeostasis in mice fed a low‐protein diet

Marco Busnelli , Stefano Manzini , Amin Jablaoui , Aurelia Bruneau , Aicha Kriaa
Molecular Nutrition and Food Research, 2020, 64 (15), pp.1900835. ⟨10.1002/mnfr.201900835⟩
Journal articles hal-02927462v1
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A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Junhua Li , Huanzi Zhong , Yuliaxis Y. Ramayo-Caldas , Nicolas Terrapon , Vincent Lombard
GigaScience, 2020, 9 (6), pp.1-15. ⟨10.1093/gigascience/giaa057⟩
Journal articles hal-02860679v1
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Mucosal-associated invariant T cells promote inflammation and intestinal dysbiosis leading to metabolic dysfunction during obesity

Amine Toubal , Badr Kiaf , Lucie Beaudoin , Lucie Cagninacci , Moez Rhimi
Nature Communications, 2020, 11 (1), pp.3755. ⟨10.1038/s41467-020-17307-0⟩
Journal articles inserm-02948958v1

Fecal Serine Protease Profiling in Inflammatory Bowel Diseases

Amin Jablaoui , Aicha Kriaa , Héla Mkaouar , Nizar Akermi , Souha Soussou
Frontiers in Cellular and Infection Microbiology, 2020, 10, ⟨10.3389/fcimb.2020.00021⟩
Journal articles hal-03372023v1

Serine proteases at the cutting edge of IBD: Focus on gastrointestinal inflammation

Aicha Kriaa , Amin Jablaoui , Héla Mkaouar , Nizar Akermi , Emmanuelle Maguin
FASEB Journal, 2020, 34 (6), pp.7270-7282. ⟨10.1096/fj.202000031RR⟩
Journal articles hal-03372024v1
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Microbiome definition re-visited: old concepts and new challenges

Gabriele Berg , Daria Rybakova , Doreen Fischer , Tomislav Cernava , Marie Christine Champomier Vergès
Microbiome, 2020, 8 (1), ⟨10.1186/s40168-020-00875-0⟩
Journal articles hal-02939442v1
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Exploring the Bacterial Impact on Cholesterol Cycle: A Numerical Study

Mélanie Bourgin , Simon Labarthe , Aicha Kriaa , Marie Lhomme , Philippe Gérard
Frontiers in Microbiology, 2020, 11, pp.1121. ⟨10.3389/fmicb.2020.01121⟩
Journal articles hal-02863236v1
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The intestinal microbiota regulates host cholesterol homeostasis

Tiphaine Le Roy , Emelyne Lécuyer , Benoit Chassaing , Moez Rhimi , Marie Lhomme
BMC Biology, 2019, 17 (1), pp.94. ⟨10.1186/s12915-019-0715-8⟩
Journal articles hal-02404677v1

Sildenafil citrate long-term treatment effects on cardiovascular reactivity in a SHR experimental model of metabolic syndrome

Yosra Doghri , Fabien Chetaneau , Moez Rhimi , Aicha Kriaa , Valérie Lalanne
PLoS ONE, 2019, 14 (11), pp. e0223914. ⟨10.1371/journal.pone.0223914⟩
Journal articles hal-03371086v1
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Microbial impact on cholesterol and bile acid metabolism: current status and future prospects

Aicha Kriaa , Mélanie Bourgin , Aline Potiron , Hela Mkaouar , Amin Jablaoui
Journal of Lipid Research, 2019, 60 (2), pp.323-332. ⟨10.1194/jlr.R088989⟩
Journal articles hal-02629276v1
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Serine protease inhibitors and human wellbeing interplay: new insights for old friends

Hela Mkaouar , Nizar Akermi , Aicha Kriaa , Anne-Laure Abraham , Amin Jablaoui
PeerJ, 2019, 7, pp.e7224. ⟨10.7717/peerj.7224⟩
Journal articles hal-02318313v1

Para-Sulphonato-calix[n]arene capped silver nanoparticles challenge the catalytic efficiency and the stability of a novel human gut serine protease inhibitor.

Nizar Akermi , Hela Mkaouar , Aicha Kriaa , Amin Jablaoui , Souha Soussou
Chemical Communications, 2019, 55 (61), pp.8935-8938. ⟨10.1039/c9cc03183a⟩
Journal articles hal-02618271v1
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Glyphosate and glyphosate-based herbicide exposure during the peripartum period affects maternal brain plasticity, maternal behaviour and microbiome

Julie Dechartres , Jodi L Pawluski , Marie-Madeleine Gueguen , Amin Jablaoui , Emmanuelle Maguin
Journal of Neuroendocrinology, 2019, 31 (9), pp.e12731. ⟨10.1111/jne.12731⟩
Journal articles hal-02153623v1

The critical role of urease in yogurt fermentation with various combinations of streptococcus thermophilus and lactobacillus delbrueckii ssp. bulgaricus

R. Yamauchi , Emmanuelle Maguin , H. Horiuchi , M. Hosokawa , Y. Sasaki
Journal of Dairy Science, 2019, 102 (2), pp.1033-1043. ⟨10.3168/jds.2018-15192⟩
Journal articles hal-02625831v1
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Microbial reduction of cholesterol to coprostanol: An old concept and new insights

Aicha Kriaa , Mélanie Bourgin , Hela Mkaouar , Amin Jablaoui , Nizar Akermi
Catalysts, 2019, 9 (2), pp.1-10. ⟨10.3390/catal9020167⟩
Journal articles hal-02627963v1

para -Sulphonato-calix[ n ]arene capped silver nanoparticles challenge the catalytic efficiency and the stability of a novel human gut serine protease inhibitor

Nizar Akermi , Hela Mkaouar , Aicha Kriaa , Amin Jablaoui , Souha Soussou
Chemical Communications, 2019, 55 (61), pp.8935-8938. ⟨10.1039/c9cc03183a⟩
Journal articles hal-04396015v1
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Reduced obesity, diabetes and steatosis upon cinnamon and grape pomace are associated with changes in gut microbiota and markers of gut barrier

Matthias van Hul , Lucie Geurts , Hubert Plovier , Céline Druart , Amandine Everard
AJP - Endocrinology and Metabolism, 2018, 314 (4), pp.E334-E352. ⟨10.1152/ajpendo.00107.2017⟩
Journal articles hal-02626402v1

Biotechnological applications of serine proteases: A patent review.

Amin Jablaoui , Aicha Kriaa , Nizar Akermi , Hela Mkaouar , Ali Gargouri
Recent Patents on Biotechnology, 2018, 12 (4), pp.280-287. ⟨10.2174/1872208312666180924112007⟩
Journal articles hal-02618140v1
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Indole, a Signaling Molecule Produced by the Gut Microbiota, Negatively Impacts Emotional Behaviors in Rats

Mathilde Jaglin , Moez Rhimi , Catherine Philippe , Nicolas Pons , Aurelia Bruneau
Frontiers in Neuroscience, 2018, 1, ⟨10.3389/fnins.2018.00216⟩
Journal articles hal-02361347v1

Relevant patented biotechnological applications of ecotin: An update.

Nizar Akermi , Hela Mkaouar , Amin Jablaoui , Aicha Kriaa , Ali Gargouri
Recent Patents on Biotechnology, 2018, 12 (4), pp.233-238. ⟨10.2174/1872208311666171122153908⟩
Journal articles hal-02618141v1
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The Enterococcus faecalis virulence factor ElrA interacts with the human Four-and-a-Half LIM Domains Protein 2

Alexandre Jamet , Rozenn Dervyn , Nicolas Lapaque , Francesca Bugli , Naima Bermudez
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-04875-3⟩
Journal articles hal-01607001v1
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Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue

Hela El Kafsi , Valentin Loux , Mahendra Mariadassou , Camille Blin , Hélène Chiapello
Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩
Journal articles hal-01509688v1
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A reference gene catalogue of the pig gut microbiome

Liang Xiao , Jordi Estellé , Pia Kiilerich , Yuliaxis Ramayo Caldas , Zhongkui Xia
Nature Microbiology, 2016, 1, pp.1-6. ⟨10.1038/nmicrobiol.2016.161⟩
Journal articles hal-01607746v1
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Functional comparison of bacteria from the human gut and closely related non-gut bacteria reveals the importance of conjugation and a paucity of motility and chemotaxis functions in the gut environment

Dragana Dobrijevic , Anne-Laure Abraham , Alexandre Jamet , Emmanuelle Maguin , Maarten van de Guchte
PLoS ONE, 2016, 11 (7), pp.e0159030. ⟨10.1371/journal.pone.0159030⟩
Journal articles hal-01353535v1

Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota

Jeanne Alard , Véronique Lehrter , Moez Rhimi , Irène Mangin , Véronique Peucelle
Environmental Microbiology, 2016, 18 (5), pp.1484-1497. ⟨10.1111/1462-2920.13181⟩
Journal articles hal-03372071v1

Combining selected immunomodulatory Propionibacterium freudenreichii and Lactobacillus delbrueckii strains: Reverse engineering development of an anti-inflammatory cheese

Coline Ple , Jérôme Breton , Romain Richoux , Marine Nurdin , Stéphanie-Marie Deutsch
Molecular Nutrition and Food Research, 2016, 60 (4), pp.935-948. ⟨10.1002/mnfr.201500580⟩
Journal articles hal-01533860v1

Transcriptional interactions suggest niche segregation among microorganisms in the human gut

Damian Rafal Plichta , Agnieszka Sierakowska Juncker , Marcelo Bertalan , Elizabeth Rettedal , Laurent Gautier
Nature Microbiology, 2016, 1 (11), pp.1-6. ⟨10.1038/NMICROBIOL.2016.152⟩
Journal articles hal-01533942v1
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Siropins, novel serine protease inhibitors from gut microbiota acting on human proteases involved in inflammatory bowel diseases

Hela Mkaouar , Nizar Akermi , Vincent Mariaule , Samira Boudebbouze , Nadia Gaci
Microbial Cell Factories, 2016, 15, pp.1-13. ⟨10.1186/s12934-016-0596-2⟩
Journal articles hal-01607278v1

Human gut microbes impact host serum metabolome and insulin sensitivity

Helle Krogh Pedersen , Valborg Gudmundsdottir , Henrik Bjørn Nielsen , Tuulia Hyotylainen , Trine Nielsen
Nature, 2016, 535 (12), ⟨10.1038/nature18646⟩
Journal articles hal-01594855v1
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Bacillus phytases: Current status and future prospects

Mohamed Ali Borgi , Samira S. Boudebbouze , Hela H. Mkaouar , Emmanuelle Maguin , Moez M. Rhimi
Bioengineered, 2015, 6 (4), pp.233-236. ⟨10.1080/21655979.2015.1048050⟩
Journal articles hal-02634782v1

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Kristoffer Forslund , Falk Hildebrand , Trine Nielsen , Gwen Falony , Emmanuelle Le Chatelier
Nature, 2015, 528 (7581), pp.266-273. ⟨10.1038/nature15766⟩
Journal articles hal-01535324v1
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The secreted L-arabinose isomerase displays anti-hyperglycemic effects in mice

Moez M. Rhimi , Luis L. Bermudez Humaran , Yuan Huang , Samira S. Boudebbouze , Nadia Gaci
Microbial Cell Factories, 2015, 14, ⟨10.1186/s12934-015-0391-5⟩
Journal articles hal-02640195v1
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Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Saeed Shoaie , Pouyan Ghaffari , Petia Kovatcheva-Datchary , Adil Mardinoglu , Partho Sen
Cell Metabolism, 2015, 22 (2), pp.320-331. ⟨10.1016/j.cmet.2015.07.001⟩
Journal articles hal-02634319v1

Recent patents on hypocholesterolemic therapeutic strategies: an update

Aline Potiron , Philippe Gerard , Tiphaine Le Roy , Philippe Lesnik , Emmanuelle Maguin
Recent Advances in DNA and Gene Sequences, 2015, 9 (1), pp.36-44. ⟨10.2174/2352092210666151216143459⟩
Journal articles hal-01536579v1

The attractive recombinant phytase from[i] Bacillus licheniformis[/i]: biochemical and molecular characterization

Mohamed Ali Borgi , Samira Boudebbouze , Nushin Aghajari , Florette Szukala , Nicolas Pons
Applied Microbiology and Biotechnology, 2014, 98 (13), pp.5937-5947. ⟨10.1007/s00253-013-5421-9⟩
Journal articles hal-01204385v1
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Lactobacillus delbrueckii ssp. lactis and ssp. bulgaricus: a chronicle of evolution in action.

Hela El Kafsi , Johan Binesse , Valentin Loux , Julien Buratti , Samira Boudebbouze
BMC Genomics, 2014, 15 (1), pp.407. ⟨10.1186/1471-2164-15-407⟩
Journal articles pasteur-01017376v1
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Genome Sequence of "Candidatus Arthromitus" sp. Strain SFB-Mouse-NL, a Commensal Bacterium with a Key Role in Postnatal Maturation of Gut Immune Functions.

Alexandre Bolotine , Tomas de Wouters , Pamela Schnupf , Christiane Bouchier , Valentin Loux
Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00705-14⟩
Journal articles hal-01204391v1

The attractive recombinant phytase from Bacillus licheniformis: biochemical and molecular characterization

Mohamed Ali Borgi , Samira Boudebbouze , Nushin Aghajari , Florette Szukala , Nicolas Pons
Applied Microbiology and Biotechnology, 2014, 98 (13), pp.5937-5947. ⟨10.1007/s00253-013-5421-9⟩
Journal articles hal-03371033v1
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Local and systemic Immune mechanisms underlying the Anti-Colitis effects of the dairy Bacterium Lactobacillus delbrueckii.

Clarissa Santos Rocha , Ana Cristina Gomes-Santos , Thais Garcias Moreira , Marcela de Azevedo , Tessalia Diniz Luerce
PLoS ONE, 2014, 9 (1), pp.1-8. ⟨10.1371/journal.pone.0085923⟩
Journal articles hal-01204288v1

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

H Bjørn Nielsen , Mathieu Almeida , Agnieszka Sierakowska Juncker , Simon Rasmussen , Junhua Li
Nature Biotechnology, 2014, 32, pp.822-828. ⟨10.1038/nbt.2939⟩
Journal articles hal-01195477v1

An integrated catalog of reference genes in the human gut microbiome

Junhua Li , Huijue Jia , Xianghang Cai , Huanzi Zhong , Qiang Feng
Nature Biotechnology, 2014, 32, pp.834-841. ⟨10.1038/nbt.2942⟩
Journal articles hal-01195478v1
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Genome sequence of[i] Lactobacillus delbrueckii[/i] subsp. [i]lactis[/i] CNRZ327, a dairy bacterium with anti-inflammatory properties.

Hela El Kafsi , Johan Binesse , Valentin Loux , Julien Buratti , Samira Boudebbouze
Genome Announcements, 2014, 2 (4), pp.1-2. ⟨10.1128/genomeA.00328-14⟩
Journal articles hal-01204323v1

Crucial role of Pro 257 in the thermostability of Bacillus phytases: Biochemical and structural investigation

Ameny Farhat-Khemakhem , Mamdouh Ben Ali , Ines Boukhris , Bassem Khemakhem , Emmanuelle Maguin
International Journal of Biological Macromolecules, 2013, 54, pp.9-15. ⟨10.1016/j.ijbiomac.2012.11.020⟩
Journal articles hal-01003322v1
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High-throughput system for the presentation of secreted and surface-exposed proteins from Gram-positive bacteria in functional metagenomics studies

Dragana Dobrijevic , Gaetana Vandemeulebrouck , Kosei Tanaka , Tomas de Wouters , Rozenn Dervyn
PLoS ONE, 2013, 8 (6), ⟨10.1371/journal.pone.0065956⟩
Journal articles hal-01190549v1

Patented Biotechnological Applications of Serpin: an Update

Nadia Gaci , Dragana Dobrijevic , Samira Boudebbouze , Bouziane Moumen , Emmanuelle Maguin
Recent Patents on DNA & Gene Sequences, 2013, 7 (2), pp.137-143. ⟨10.2174/1872215611307020008⟩
Journal articles hal-03372089v1
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Richness of human gut microbiome correlates with metabolic markers

Emmanuelle Le Chatelier , Trine Nielsen , Junjie Qin , Edi Prifti , Falk Hildebrand
Nature, 2013, 500 (7464), pp.541-546. ⟨10.1038/nature12506⟩
Journal articles hal-01190602v1

The acid tolerant and cold-active beta-galactosidase from Lactococcus lactis strain is an attractive biocatalyst for lactose hydrolysis

Violette V. Vincent , Nushin N. Aghajari , Noemie N. Pollet , Anais A. Boisson , Samira S. Boudebbouze
Antonie van Leeuwenhoek, 2013, 103 (4), pp.701-712. ⟨10.1007/s10482-012-9852-6⟩
Journal articles hal-01001085v1

High-Throughput System for the Presentation of Secreted and Surface-Exposed Proteins from Gram-Positive Bacteria in Functional Metagenomics Studies

Dragana Dobrijevic , Gaetana Di Liberto , Kosei Tanaka , Tomas de Wouters , Rozenn Dervyn
PLoS ONE, 2013, 8 (6), pp.e65956. ⟨10.1371/journal.pone.0065956⟩
Journal articles hal-03372098v1

Characterization of glucansucrase and dextran from Weissella sp TN610 with potential as safe food additives

Wacim W. Bejar , Valerie V. Gabriel , Myriam M. Amari , Sandrine Morel , Monia M. Mezghani
International Journal of Biological Macromolecules, 2013, 52, pp.125 - 132. ⟨10.1016/j.ijbiomac.2012.09.014⟩
Journal articles hal-01004509v1

Discriminatory antibacterial effects of calix[n]arene capped silver nanoparticles with regard to Gram positive and Gram negative bacteria

Samira Boudebbouze , Anthony W. Coleman , Yannick Tauran , Hela H. Mkaouar , Florent Perret
Chemical Communications, 2013, 49 (64), pp.7150-7152. ⟨10.1039/c3cc42838a⟩
Journal articles hal-01597154v1

Patented biotechnological applications of serpin: an update

Nadia Gaci ,