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Functional genomics gives new insights into the ectomycorrhizal degradation of chitin

François Maillard , Annegret Kohler , Emmanuelle Morin , Christian Hossann , Shingo Miyauchi
New Phytologist, 2023, 238 (2), pp.845-858. ⟨10.1111/nph.18773⟩
Journal articles hal-04219917v1
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A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy

Pamela Guerillot , Asaf Salamov , Clémentine Louet , Emmanuelle Morin , Pascal Frey
Phytopathology, 2023, 113 (2), pp.252-264. ⟨10.1094/PHYTO-04-22-0128-R⟩
Journal articles hal-03847696v1
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The mineral weathering ability of Collimonas pratensis PMB3(1) involves a Malleobactin-mediated iron acquisition system

Laura Picard , Cédric Paris , Tiphaine Dhalleine , Emmanuelle Morin , Philippe Oger
Environmental Microbiology, 2022, 24 (2), pp. 784-802. ⟨10.1111/1462-2920.15508⟩
Journal articles hal-03194986v1

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Brian Looney , Shingo Miyauchi , Emmanuelle Morin , Elodie Drula , Pierre Emmanuel Courty
New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩
Journal articles hal-04033326v1

Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon

Stephane Uroz , Océane Geisler , Laure Fauchery , Raphaël Lami , Alice Rodrigues
FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩
Journal articles hal-03915632v1
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Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species

Yi-Fei Sun , Annie Lebreton , Jia-Hui Xing , Yu-Xuan Fang , Jing Si
Journal of Fungi, 2022, 8 (3), pp.311. ⟨10.3390/jof8030311⟩
Journal articles hal-03627194v1

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu , Shingo Miyauchi , Emmanuelle Morin , Alan Kuo , Elodie Drula
New Phytologist, 2021, 10 (4), ⟨10.1111/nph.17858⟩
Journal articles hal-03473169v1
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Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee

Emmanuelle Morin , Claude Murat , Nicolas Cichocki , Herminia de La Varga , Annegret Kohler
Microbiology Resource Announcements, 2021, 10 (4), ⟨10.1128/MRA.00799-20⟩
Journal articles hal-03324444v1
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Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Hayat Hage , Shingo Miyauchi , Máté Virágh , Elodie Drula , Byoungnam Min
Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15423⟩
Journal articles hal-03226505v1

At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions

Francesco Venice , Stefano Ghignone , Alessandra Salvioli Di Fossalunga , Joelle Amselem , Mara Novero
Environmental Microbiology, 2020, 22 (1), pp.122-141. ⟨10.1111/1462-2920.14827⟩
Journal articles hal-02628269v1
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩
Journal articles hal-03082507v1
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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus

Salvatore Casarrubia , Elena Martino , Stefania Daghino , Annegret Kohler , Emmanuelle Morin
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.00341⟩
Journal articles hal-02905623v1

Transcriptome Analysis of Apple Leaves Infected by the Rust Fungus Gymnosporangium yamadae at Two Sporulation Stages

Si-Qi Tao , Lucas Auer , Emmanuelle Morin , Ying-Mei Liang , Sébastien Duplessis
Molecular Plant-Microbe Interactions, 2020, 33 (3), pp.444-461. ⟨10.1094/MPMI-07-19-0208-R⟩
Journal articles hal-02989882v1
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Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi , Hayat Hage , Elodie Drula , Laurence Lesage-Meessen , Jean-Guy Berrin
DNA Research, 2020, ⟨10.1093/dnares/dsaa011⟩
Journal articles hal-02868456v2
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The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata

Daniele Armaleo , Olaf Müller , François Lutzoni , Guillaume Blanc , Helge B Bode
BMC Genomics, 2019, 20 (1), pp.605. ⟨10.1186/s12864-019-5629-x⟩
Journal articles hal-02192633v1

Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

Emmanuelle Morin , Shingo Miyauchi , Hélène San Clemente , Eric C. H. Chen , Adrian Pelin
New Phytologist, 2019, 222 (3), pp.1584-1598. ⟨10.1111/nph.15687⟩
Journal articles hal-02181069v1

Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers

Florian Barbi , Annegret Kohler , Kerrie Barry , Preetisri Baskaran , Chris Daum
Environmental Microbiology, 2019, 22 (3), pp.1089-1103. ⟨10.1111/1462-2920.14873⟩
Journal articles hal-02612520v1

Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring

Hao Tan , Annegret Kohler , Renyun Miao , Tianhai Liu , Qiang Zhang
Environmental Microbiology, 2019, 21 (10), pp.3909-3926. ⟨10.1111/1462-2920.14741⟩
Journal articles hal-02311393v1
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Comparative transcriptomics of Gymnosporangium spp. teliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle

Si-Qi Tao , Bin Cao , Emmanuelle Morin , Ying-Mei Liang , Sébastien Duplessis
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6099-x⟩
Journal articles hal-02905570v1

Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

Elena Martino , Emmanuelle Morin , Gwen-Aëlle Grelet , Alan Kuo , Annegret Kohler
New Phytologist, 2018, 217 (3), pp.1213-1229. ⟨10.1111/nph.14974⟩
Journal articles hal-02080038v1

High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

Eric C H Chen , Emmanuelle Morin , Denis Beaudet , Jessica Noel , Gokalp Yildirir
New Phytologist, 2018, 220 (4), pp.1161-1171. ⟨10.1111/nph.14989⟩
Journal articles hal-02018426v1
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The Hydrophobin-Like OmSSP1 May Be an Effector in the Ericoid Mycorrhizal Symbiosis

Salvatore Casarrubia , Stefania Daghino , Annegret Kohler , Emmanuelle Morin , Hassine-Radhouane Khouja
Frontiers in Plant Science, 2018, 9, pp.1-14. ⟨10.3389/fpls.2018.00546⟩
Journal articles hal-01844910v1
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Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

Claude Murat , Thibaut Payen , Benjamin Noël , Alan Kuo , Emmanuelle Morin
Nature Ecology & Evolution, 2018, 2 (12), pp.1956-1965. ⟨10.1038/s41559-018-0710-4⟩
Journal articles hal-02094494v1
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Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng , Hui Sun , Eeva J. Vainio , Tommaso Raffaello , Andriy Kovalchuk
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4610-4⟩
Journal articles hal-01844924v1
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AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée

Pierre Adenot , Stéphane Bansard , David Benaben , Veronique Brunaud , Christophe Caron
Cahier des Techniques de l'INRA, 2018, pp.1-7
Journal articles hal-02097192v1
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Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum

Maira de Freitas Pereira , Claire Veneault-Fourrey , Patrice Vion , Frédéric Guinet , Emmanuelle Morin
Frontiers in Microbiology, 2018, 9, pp.1-17. ⟨10.3389/fmicb.2018.00141⟩
Journal articles hal-02627372v1
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Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle

Claude Murat-Furminieux , Alan Kuo , Kerrie W Barry , Alicia Clum , Rhyan B Dockter
Genome Announcements, 2018, 6 (25), ⟨10.1128/genomeA.00537-18⟩
Journal articles hal-02154520v1
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The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus.

Laura Coninx , Anneleen Thoonen , Eli Slenders , Emmanuelle Morin , Natascha Arnauts
Frontiers in Microbiology, 2017, 8, pp.2320. ⟨10.3389/fmicb.2017.02320⟩
Journal articles hal-01683176v1
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Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

Yohann Daguerre , E. Levati , Joske Ruytinx , Emilie Tisserant , Emmanuelle Morin
BMC Genomics, 2017, 18 (1), pp.1-23. ⟨10.1186/s12864-017-4114-7⟩
Journal articles hal-01611442v1
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The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

Maira de Freitas Pereira , André Narvaes da Rocha Campos , Thalita Cardoso Anastacio , Emmanuelle Morin , Sérgio Hermínio Brommonschenkel
BMC Genomics, 2017, 18 (1), ⟨10.1186/s12864-017-3545-5⟩
Journal articles hal-01568134v1

Identification, evolution and functional characterization of two Zn CDF-family transporters of the ectomycorrhizal fungus Suillus luteus

Joske Ruytinx , Laura Coninx , Hoai Nguyen , Nick Smisdom , Emmanuelle Morin
Environmental Microbiology Reports, 2017, 9 (4), pp.419-427. ⟨10.1111/1758-2229.12551⟩
Journal articles hal-01573243v1

Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes

F. Rineau , H. Lmalem , D. Ahren , F. Shah , T. Johansson
Mycorrhiza, 2017, 27 (4), pp.383-396. ⟨10.1007/s00572-016-0758-4⟩
Journal articles hal-01597869v1

A new promising phylogenetic marker to study the diversity of fungal communities: The Glycoside Hydrolase 63 gene

Leticia Pérez-Izquierdo , Emmanuelle Morin , J. P. Maurice , Francis Martin , A. Rincón
Molecular Ecology Resources, 2017, 17 (6), pp.1-11. ⟨10.1111/1755-0998.12678⟩
Journal articles hal-01637748v1
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Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

Martina Peter , Annegret Kohler , Robin A. Ohm , Alan Kuo , Jennifer Kruetzmann
Nature Communications, 2016, 7, pp.1-15. ⟨10.1038/ncomms12662⟩
Journal articles hal-01439098v1
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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Annegret Kohler , Alan Kuo , Laszlo G. Nagy , Emmanuelle Morin , Kerrie W. Barry
Nature Genetics, 2015, 47 (4), pp.410-U176. ⟨10.1038/ng.3223⟩
Journal articles hal-02639336v1

Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis

Jeanne Dore , Marie Perraud , Cindy Dieryckx , Annegret Kohler , Emmanuelle Morin
New Phytologist, 2015, 208 (4), pp.1169-1187. ⟨10.1111/nph.13546⟩
Journal articles hal-01258333v1

The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses

Jonathan Michael Plett , Emilie Tisserant , Annick Brun-Jacob , Emmanuelle Morin , Igor V. Grigoriev
Molecular Plant-Microbe Interactions, 2015, 28 (3), pp.261-273. ⟨10.1094/MPMI-05-14-0129-FI⟩
Journal articles hal-01269457v1
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Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins

Clément Pellegrin , Emmanuelle Morin , Francis M. Martin , Claire Veneault-Fourrey
Frontiers in Microbiology, 2015, 6, pp.1-15. ⟨10.3389/fmicb.2015.01278⟩
Journal articles hal-01269483v1

A survey of genome-wide single nucleotide polymorphisms through genome resequencing in the Périgord black truffle (Tuber melanosporum Vittad.)

Thibaut Payen , Claude Murat-Furminieux , Anaïs Gigant , Emmanuelle Morin , Stéphane de Mita
Molecular Ecology Resources, 2015, 15 (5), pp.1243-1255. ⟨10.1111/1755-0998.12391⟩
Journal articles hal-01269418v1
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Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00450⟩
Journal articles hal-01269012v1

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Robert Riley , Asaf A. Salamov , Daren W. Brown , Laszlo G. Nagy , Dimitrios Floudas
Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (27), pp.9923-9928. ⟨10.1073/pnas.1400592111⟩
Journal articles hal-01578657v1

Genome Sequence of the Mycorrhizal Helper Bacterium Pseudomonas fluorescens BBc6R8.

Aurélie Deveau , H Gross , Emmanuelle Morin , T Karpinets , S Utturkar
Genome Announcements, 2014, 2 (1), pp.e01152-13 - e01152-13. ⟨10.1128/genomeA.01152-13⟩
Journal articles hal-01579698v1
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La flore fongique des truffières

Claude Murat-Furminieux , Marc Buée , Juliette Lengellé , François Le Tacon , Emmanuelle Morin
Le Trufficulteur Français, 2014, 88 (3), pp.14-15
Journal articles hal-01269191v1

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

Claire Veneault-Fourrey , Carine Commun , Annegret Kohler , Emmanuelle Morin , Raffaella Balestrini
Fungal Genetics and Biology, 2014, 72, pp.168-181. ⟨10.1016/j.fgb.2014.08.007⟩
Journal articles hal-01123254v1
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Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

Pedro Talhinhas , Helena G. Azinheira , Bruno Vieira , Andreia Loureiro , Silvia Tavares
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00088⟩
Journal articles hal-01268536v1
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Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

Stéphane Uroz , Panos Ioannidis , Juliette Lengelle , Aurélie Cébron , Emmanuelle Morin
PLoS ONE, 2013, 8 (2), ⟨10.1371/journal.pone.0055929⟩
Journal articles hal-01119698v1
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Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest

Aurore Coince , Olivier Cael , Cyrille Bach , Juliette Lengelle , Corinne Cruaud
Fungal Ecology, 2013, 6 (3), pp.223-235. ⟨10.1016/j.funeco.2013.01.002⟩
Journal articles hal-01578661v1
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First identification of polymorphic microsatellite markers in the Burgundy truffle, Tuber aestivum (Tuberaceae)

Virginie Molinier , Claude Murat-Furminieux , Emmanuelle Morin , Armelle Gollotte , Daniel Wipf
Applications in Plant Sciences, 2013, 1 (2), 4 p. ⟨10.3732/apps.1200220⟩
Journal articles hal-01268457v1

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

Emilie Tisserant , Mathilde Malbreil , Alan Kuo , Annegret Kohler , Aikaterini Symeonidi
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (50), pp.20117-20122. ⟨10.1073/pnas.1313452110⟩
Journal articles hal-01578663v1

Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012)

Emmanuelle Morin , Annegret Kohler , Adam R. Baker , Marie Foulongne-Oriol , Julien Lombard
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (10), pp.4146-4146. ⟨10.1073/pnas.1300201110⟩
Journal articles hal-01268023v1
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Tracking a refined eIF4E-binding motif reveals Angel1 as a new partner of eIF4E.

Pauline Gosselin , Yvan Martineau , Julia Morales , Mirjam Czjzek , Virginie Glippa
Nucleic Acids Research, 2013, 41 (16), pp.7783-92. ⟨10.1093/nar/gkt569⟩
Journal articles hal-01002440v1

Polyaminoquinoline iron chelators for vectorization of antiproliferative agents: design, synthesis, and validation.

Vincent Corcé , Emmanuelle Morin , Solène Guihéneuf , Eric Renault , Stéphanie Renaud
Bioconjugate Chemistry, 2012, 23 (9), pp.1952-68. ⟨10.1021/bc300324c⟩
Journal articles inserm-00863636v1
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Characterization of transposable elements in the ectomycorrhizal fungus Laccaria bicolor

Jessy Labbé , Claude Murat , Emmanuelle Morin , Gerald A. Tuskan , François F. Le Tacon
PLoS ONE, 2012, 7 (8), ⟨10.1371/journal.pone.0040197⟩
Journal articles hal-02650918v1
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Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities

Lara Danielsen , Andrea Thürmer , Peter Meinicke , Marc Buée , Emmanuelle Morin
Ecology and Evolution, 2012, 2 (8), pp.1935-1948. ⟨10.1002/ece3.305⟩
Journal articles hal-01267977v1

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Emmanuelle Morin , Annegret Kohler , Adam R. Baker , Marie Foulongne-Oriol , Julien Lombard
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (43), pp.17501-17506. ⟨10.1073/pnas.1206847109⟩
Journal articles hal-01267851v1

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Dimitrios Floudas , Manfred Binder , Robert Riley , Kerrie Barry , Robert A. Blanchette
Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩
Journal articles hal-01268324v1

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Ake Olson , Andrea Aerts , Fred Asiegbu , Lassaâd Belbahri , Ourdia Bouzid
New Phytologist, 2012, 194 (4), pp.1001-1013. ⟨10.1111/j.1469-8137.2012.04128.x⟩
Journal articles hal-02649642v1
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The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

Emilie Tisserant , Annegret Kohler , Pascale Dozolme , R. Balestrini , K. Benabdellah
New Phytologist, 2012, 196 (3), pp.755-769. ⟨10.1111/j.1469-8137.2011.03948.x⟩
Journal articles hal-01267801v1
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RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter

Benjamin Petre , Emmanuelle Morin , Emilie Tisserant , Stéphane Hacquard , Corinne da Silva
PLoS ONE, 2012, 7 (8), pp.1-12. ⟨10.1371/journal.pone.0044408⟩
Journal articles hal-01267887v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stéphane Uroz , P. Oger , Emmanuelle Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩
Journal articles hal-01268355v1

Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome

Emilie Tisserant , C. da Silva , Annegret Kohler , Emmanuelle Morin , Patrick Wincker
New Phytologist, 2011, 189 (3), pp.883-891. ⟨10.1111/j.1469-8137.2010.03597.x⟩
Journal articles hal-02645504v1

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

Daniel C. Eastwood , Dimitrios Floudas , Manfred Binder , Andrzej Majcherczyk , Patrick Schneider
Science, 2011, 333 (6043), pp.762 - 765. ⟨10.1126/science.1205411⟩
Journal articles hal-02647602v1

Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers

Claude Murat , Claudia Riccioni , Beatrice Belfiori , Nicolas Cichocki , Jessy Labbé
Fungal Genetics and Biology, 2011, 48 (6), pp.592 - 601. ⟨10.1016/j.fgb.2010.10.007⟩
Journal articles hal-02650008v1

Gene delivery with polycationic fullerene hexakis-adducts

David Sigwalt , Michel Holler , Julien Iehl , Jean-François Nierengarten , Marc Nothisen
Chemical Communications, 2011, 47 (16), pp.4640-4642. ⟨10.1039/c0cc05783e⟩
Journal articles hal-02478560v1

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

Antonietta Mello , Chiara Napoli , Claude Murat , Emmanuelle Morin , Giuseppe Marceddu
Mycologia, 2011, 103 (6), pp.1184-1193. ⟨10.3852/11-027⟩
Journal articles hal-02645002v1
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien Duplessis , Christina A C. A. Cuomo , Yao-Cheng Y.-C. Lin , Andrea Aerts , Emilie Tisserant
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (22), pp.9166-9171. ⟨10.1073/pnas.1019315108⟩
Journal articles hal-01000169v1

Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers

Jessy Labbe , Claude Murat-Furminieux , Emmanuelle Morin , François F. Le Tacon , Francis Martin
Current Genetics, 2011, 57 (2), pp.75 - 88. ⟨10.1007/s00294-010-0328-9⟩
Journal articles hal-02643205v1

Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum

Barbara Montanini , Elisabetta Levati , Angelo Bolchi , Annegret Kohler , Emmanuelle Morin
New Phytologist, 2011, 189 (3), pp.736 - 750. ⟨10.1111/j.1469-8137.2010.03525.x⟩
Journal articles hal-02652250v1
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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Francis Martin , Annegret Kohler , Claude Murat , Raffaella Balestrini , Pedro M Coutinho
Nature, 2010, 464 (7291), pp.1033-1038. ⟨10.1038/nature08867⟩
Journal articles cea-00907731v1

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

Marc Buée , Marlis Reich , Claude Murat , Emmanuelle Morin , R.H. Nilsson
New Phytologist, 2009, 184 (2), pp.449-456. ⟨10.1111/j.1469-8137.2009.03003.x⟩
Journal articles hal-02667034v1

The ectomycorrhizal fungus Laccaria bicolor stimulates lateral root formation in poplar and arabidopsis through auxin transport and signaling

Judith Felten , Annegret Kohler , Emmanuelle Morin , Rishikesh P. Bhalerao , Klaus Palme
Plant Physiology, 2009, 151 (4), pp.1991-2005. ⟨10.1104/pp.109.147231⟩
Journal articles hal-02667577v1

Translational control genes in the sea urchin genome.

Julia Morales , Odile Mulner-Lorillon , Bertrand Cosson , Emmanuelle Morin , Robert Bellé
Developmental Biology, 2006, 300 (1), pp.293-307. ⟨10.1016/j.ydbio.2006.07.036⟩
Journal articles hal-00358450v1

The dog and rat olfactory receptor repertoires

Pascale Quignon , Mathieu Giraud , Maud Rimbault , Patricia Lavigne , Sandrine Tacher
Genome Biology, 2005, 6 (10), pp.R83. ⟨10.1186/gb-2005-6-10-r83⟩
Journal articles hal-00107100v1

Do SSPs regulate ectomycorrhizal symbiosis in response to biotic and abiotic nutrient signals in trees?

C. Bonnot , Alexis Chartoire , Emmanuelle Morin , Annegret Kohler , Francis Martin
INUPRAG Symposium on Integrative Plant Biology 2023, Feb 2023, Umeå, Sweden
Conference papers hal-04186836v1

What are the roles of SSPs in regulating ECM symbiosis in response to biotic and abiotic nutritional signals in trees?

C. Bonnot , Him K. Shrestha , Alexis Chartoire , Alexandra Hénocq , Cécile Gaumétou
JOURNÉES 2022 SYMBIPHYT, Nov 2022, Dijon, France
Conference papers hal-04186873v1

Investigation of the regulation of ectomycorrhizal symbiosis by nutrient signalling in Poplar

C. Bonnot , Alexandra Hénocq , Cécile Gaumétou , Emmanuelle Morin , Annegret Kohler
4th international Molecular Mycorrhiza Meeting, Feb 2019, Turin, Italy
Conference papers hal-04186913v1

Phylogenetics and comparative transcriptomics of Gymnosporangium species

Sébastien Duplessis , Si-Qi Tao , Emmanuelle Morin , Tian Cheng-Ming , Liang Ying-Mei
Rust workshop of the 30th Fungal Genetics Conference, Genetics Society of America, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference papers hal-03251310v1

The small secreted protein OmSSP1 is up-regulated in ericoid mycorrhiza and is involved in symbiosis

Stefania Daghino , Salvatore Casarrubia , Annegret Kohler , Emmanuelle Morin , Yohann Daguerre
Effectome meeting XI, Nov 2018, Lauret, France
Conference papers hal-03047789v1

Investigation of the regulation of ECM symbiosis by nutrient signalling in plants

C. Bonnot , Alexandra Hénocq , Cécile Gaumétou , Emmanuelle Morin , Annegret Kohler
VI WORKSHOP PLANT PEPTIDES AND RECEPTORS, Sep 2018, Antequera, Spain
Conference papers hal-04186927v1

Organic Matter removal impacts forest microbial community and tree physiology.

François Maillard , Valentin Leduc , Chloé Viotti , Elisa Thébault , Cyrille Bach
Functional Ecology Conference, Dec 2018, NANCY (54), France
Conference papers hal-03339728v1

Using genomics to understand the role of ectomycorrhizal fungi in the forest ecosystem

Annegret Kohler , Marc Buée , Lucas Auer , Emmanuelle Morin , Alan Kuo
Ecology of Soil Microorganisms Conference, Jul 2018, Helsinki, Finland
Conference papers hal-03339800v1

Cd-regulated plant and fungal genes in the ericoid mycorrhizal symbiosis

Salvatore Casarrubia , Elena Martino, , Stefania Daghino, , Annegret Kohler , Emmanuelle Morin
Riunione annuale dei gruppi di lavoro SBI, Biologia Cellulare e Molecolare, Biotecnologie e Differenziamento, Jun 2018, Sanremo, Italy
Conference papers hal-03467505v1

Comparative genomics and transcriptomics for understanding ericoid mycorrhizal fungi ecology

Elena Martino, , Emmanuelle Morin , Gwen-Aëlle Grelet , Annegret Kohler , Stefania Daghino
9th International Conference on Mycorrhiza, ICOM9, Jul 2017, Prague, Czech Republic
Conference papers hal-03470193v1

The effectors of Corynespora cassiicola virulence in rubber tree. In IRRDB International Rubber

Valérie Pujade-Renaud , David Lopez , Sébastien Ribeiro , Dinh Minh Tran , Marine Deon
IRRDB International Rubber Conference, International Rubber Resarch Development Board IRRDB., Aug 2015, Ho Chi Minh, Vietnam
Conference papers hal-01603469v1
Image document

First identification of polymorphic microsatellite markers in the Burgundy truffle, Tuber aestivum (Tuberaceae)

Virginie Molinier , Claude Murat-Furminieux , Emmanuelle Morin , Armelle Gollotte , Daniel Wipf
3. Annual Joint Meeting on Plant Microbe Interactions, Sep 2014, Dijon, France
Conference papers hal-01268760v1

Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populina

Benjamin Petre , Stéphane S. Hacquard , Antoine Persoons , Emilie Tisserant , Emmanuelle Morin
IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States
Conference papers hal-02801804v1

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett
Max-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Nov 2014, Nancy, France
Conference papers hal-02794927v1

Metagenomics of the forest soil microbiome: from diversity to function

Stéphane S. Uroz , Marc Buée , Francis Martin , Aurore Coince , Claude Murat
1. EcoFINDERS WP3 workshop : 'Strategies and tools for sampling, DNA extraction, DNA sequencing and bioinformatics, 2011, Nancy, France
Conference papers hal-02804475v1

Modulation of plant and fungal gene expression upon Cd exposure and symbiosis in ericoid mycorrhizal Vaccinium myrtillus

Elena Martino, , Salvatore Casarrubia , Stefania Daghino , Annegret Kohler , Emmanuelle Morin
115th Conference of the Italian Botanical Society, Sep 2020, online, Italy
Conference poster hal-03469225v1
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Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

Emmanuelle Morin , Hélène San Clemente , Shingo Miyauchi , Eric C H Chen , Alan Kuo
JOBIM, Jul 2019, Nantes, France
Conference poster hal-03324335v1

Transcriptomic analysis of plant and fungal Cd-regulated genes in the ericoid mycorrhizal symbiosis

Salvatore Casarrubia , Elena Martino, , Stefania Daghino , Annegret Kohler , Emmanuelle Morin
4th international Molecular Mycorrhiza Meeting, Feb 2019, Turin, Italy
Conference poster hal-03469280v1

Phylogenetics and comparative transcriptomics of Gymnosporangium species.

Si-Qi Tao , Emmanuelle Morin , Tian Cheng-Ming , Liang Ying-Mei , Sébastien Duplessis
30th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States
Conference poster hal-03253596v1

OmSSP1, a hydrophobin-like small secreted protein, is a putative effector in ericoid mycorrhiza

Stefania Daghino , Salvatore Casarrubia , Annegret Kohler , Emmanuelle Morin , Yohann Daguerre
4th international Molecular Mycorrhiza Meeting, Feb 2019, Turin, Italy
Conference poster hal-03469295v1
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Regulation of ectomycorrhizal symbiosis by nutrient signalling in poplar

C. Bonnot , A. Hénocq , C. Gaumétou , Emmanuelle Morin , Annegret Kohler
3rd MPIterMic - ARBRE workshop on Molecular Plant Fungal Interactions, Nov 2018, Cologne, Germany
Conference poster hal-04187772v1

The hydrophobin-like OmSSP1 may be an effector in the ericoid mycorrhizal symbiosis

Salvatore Casarrubia , Stefania Daghino , Annegret Kohler , Emmanuelle Morin , Hassine-Radhouane Khouja
3rd MPIterMic - ARBRE workshop on Molecular Plant Fungal Interactions, Nov 2018, Cologne, Germany
Conference poster hal-03469309v1
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Exploring genome diversity of 6 strains of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

Emmanuelle Morin , Eric C H Chen , Alan Kuo , Denis Beaudet , Igor V Grigoriev
JOBIM, Jul 2018, Marseille, France
Conference poster hal-03324326v1

The small secreted protein OmSSP1 is up-regulated in ericoid mycorrhiza and is involved in symbiosis

Salvatore Casarrubia , Stefania Daghino , Annegret Kohler , Emmanuelle Morin , Yohann Daguerre
9th International Conference on Mycorrhiza, ICOM9, Jul 2017, Prague, Czech Republic
Conference poster hal-03470134v1

Transplantation de litières foliaires de chêne: réponses taxonomique et fonctionnelle des communautés fongiques associées à la décomposition

François Maillard , Isabelle Ziegler-Devin , Emmanuelle Morin , Valentin Leduc , Nicolas Brosse
Séminaire annuel de l’Ecole Doctorale RP2E, Jan 2017, Vandoeuvre-les -Nancy, France
Conference poster hal-03340972v1

Supersize fungi: Rust in the genomics era!

Cécile Lorrain , Mondo Sj , Emmanuelle Morin , Kurt M Labutti , Anna Lipzen
29th Fungal Genetics Conference, Mar 2017, Asilomar, Pacific Grove, Californie, United States
Conference poster hal-03253560v1

New insights from genome and transcriptome analyses of four ericoid mycorrhizal fungi

Elena Martino, , Gwen-Aëlle Grelet , Emmanuelle Morin , Annegret Kohler , Stefania Daghino
13th European Conference on Fungal Genetics, Apr 2016, Paris, France
Conference poster hal-03470143v1

Sequence-driven in silico discovery of potential effectors involved in Corynespora cassiicola pathogenesis

David Lopez , Philippe Label , Sébastien Ribeiro , Emmanuelle Morin , Annegret Kohler
JOBIM, Jul 2015, Clermont-Fd, France. , 2015, Actes de la conférence JOBIM 2015
Conference poster hal-01601480v1

Exploring genome diversity of mycorrhizal fungi to understand symbiosis

Emmanuelle Morin , Annegret Kohler , Alan Kuo , Claire Veneault-Fourrey , Clément Pellegrin
23rd Annual International Conference on Intelligent Systems for Molecular Biology and the 14th European Conference on Computational Biology 2015, Jul 2015, Dublin, Ireland
Conference poster hal-03080200v1

Genetic diversity of Tuber aestivum / uncinatum

Virginie Molinier , Claude Murat-Furminieux , Emmanuelle Morin , Patrick Wincker , Armelle Gollotte
ALPHY Meeting, Mar 2012, Banyuls sur Mer, France. , 2012
Conference poster hal-01268765v1