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Journal articles28 documents

  • Roland Berthomieu, María Fernanda Pérez-Bernal, Gaëlle Santa-Catalina, Elie Desmond-Le Quéméner, Nicolas Bernet, et al.. Mechanisms underlying Clostridium pasteurianum’s metabolic shift when grown with Geobacter sulfurreducens. Applied Microbiology and Biotechnology, Springer Verlag, 2022, 106 (2), pp.865-876. ⟨10.1007/s00253-021-11736-7⟩. ⟨hal-03516733⟩
  • Courtney M Thomas, Elie Desmond-Le Quéméner, Simonetta Gribaldo, Guillaume Borrel. Factors shaping the abundance and diversity of the gut archaeome across the animal kingdom. Nature Communications, Nature Publishing Group, 2022, 13 (1), pp.3358. ⟨10.1038/s41467-022-31038-4⟩. ⟨hal-03709180⟩
  • Ihab I. Haidar, Elie Desmond-Le Quéméner, Jean-Pierre Barbot, Jérôme Harmand, Alain Rapaport. Modelling and optimal control of an electro-fermentation process within a batch culture. Processes, MDPI, 2022, 10 (3), ⟨10.3390/pr10030535⟩. ⟨hal-03593854⟩
  • Hicham Ouazaite, Kim Milferstedt, Jérôme Hamelin, Elie Desmond‐le Quéméner. Mapping the biological activities of filamentous oxygenic photogranules. Biotechnology and Bioengineering, Wiley, 2021, 118 (2), pp.601-611. ⟨10.1002/bit.27585⟩. ⟨hal-02981499⟩
  • Pablo Ugalde-Salas, Héctor Ramírez C., Jérôme Harmand, Elie Desmond-Le Quéméner. Microbial Interactions as Drivers of a Nitrification Process in a Chemostat. Bioengineering, MDPI, 2021, 8 (3), pp.31. ⟨10.3390/bioengineering8030031⟩. ⟨hal-03335915⟩
  • Elie Desmond-Le Quéméner, Roman Moscoviz, Nicolas Bernet, Andrew Marcus. Modeling of interspecies electron transfer in anaerobic microbial communities. Current Opinion in Biotechnology, 2021, 67, pp.49-57. ⟨10.1016/j.copbio.2020.12.019⟩. ⟨hal-03117058⟩
  • Aya Yanagawa, Masatoshi Tomaru, Atsushi Kajiwara, Hiroki Nakajima, Elie Desmond-Le Quéméner, et al.. Impact of 2.45 GHz Microwave Irradiation on the Fruit Fly, Drosophila melanogaster. Insects, MDPI, 2020, 11 (9), pp.598. ⟨10.3390/insects11090598⟩. ⟨hal-02989473⟩
  • Pablo Ugalde-Salas, Elie Desmond-Le Quemener, Jérôme Harmand, Alain Rapaport, Théodore Bouchez. Insights from Microbial Transition State Theory on Monod's Affinity Constant. Scientific Reports, Nature Publishing Group, 2020, 10 (5323), pp.5323. ⟨10.1038/s41598-020-62213-6⟩. ⟨hal-02504942⟩
  • Roman Moscoviz, Elie Desmond-Le Quéméner, Eric Trably, Nicolas Bernet, Jérôme Hamelin. Novel Outlook in Microbial Ecology: Nonmutualistic Interspecies Electron Transfer. Trends in Microbiology, Elsevier, 2020, 28 (4), pp.245-253. ⟨10.1016/j.tim.2020.01.008⟩. ⟨hal-02534986⟩
  • Aya Yanagawa, Atsushi Kajiwara, Hiroki Nakajima, Elie Desmond-Le Quéméner, Jean-Philippe Steyer, et al.. Physical assessments of termites (Termitidae) under 2.45 GHz microwave irradiation. Scientific Reports, 2020, 10 (1), pp.5197. ⟨10.1038/s41598-020-61902-6⟩. ⟨hal-02948982⟩
  • Floriana Iasimone, Jordan Seira, Elie Desmond-Le Quemener, Antonio Panico, Vincenzo de Felice, et al.. Bioflocculation and settling studies of native wastewater filamentous cyanobacteria using different cultivation systems for a low-cost and easy to control harvesting process. Journal of Environmental Management, 2020, 256, pp.109957. ⟨10.1016/j.jenvman.2019.109957⟩. ⟨hal-02531606⟩
  • Elie Desmond-Le Quéméner, Arnaud Bridier, Jiang-Hao Tian, Celine Madigou, Chrystelle Bureau, et al.. Biorefinery for heterogeneous organic waste using microbial electrochemical technology. Bioresource Technology, Elsevier, 2019, 292, ⟨10.1016/j.biortech.2019.121943⟩. ⟨hal-02623488⟩
  • László Kook, Elie Desmond-Le Quéméner, Péter Bakonyi, Jan Zitka, Eric Trably, et al.. Behavior of two-chamber microbial electrochemical systems started-up with different ion-exchange membrane separators. Bioresource Technology, Elsevier, 2019, 278, pp.279-286. ⟨10.1016/j.biortech.2019.01.097⟩. ⟨hal-02623479⟩
  • Hadrien Delattre, Elie Desmond-Le Quéméner, Christian Duquennoi, Ahlem Filali, Théodore Bouchez. Consistent microbial dynamics and functional community patterns derived from first principles. ISME Journal, Nature Publishing Group, 2019, 13 (2), pp.263-276. ⟨10.1038/s41396-018-0272-0⟩. ⟨hal-02628186⟩
  • A. Foulet, T. Bouchez, Elie Desmond Le Quemener, L. Giard, L. Renvoise, et al.. Eco-design of microbial electrochemical technologies for the production of waste-based succinic acid thanks to a life cycle assessment. Journal of Cleaner Production, 2019, 225, pp.1155-1168. ⟨10.1016/j.jclepro.2019.03.231⟩. ⟨hal-02609327⟩
  • A. Foulet, T. Bouchez, E. Desmond Le Quéméner, L. Giard, L. Renvoisé, et al.. Life cycle assessment of a bioelectrochemical system as a new technological platform for biosuccinic acid production from waste. Environmental Science and Pollution Research, 2018, 25 (36), pp.36485-36502. ⟨10.1007/s11356-018-3530-9⟩. ⟨hal-02268531⟩
  • Roman Moscoviz, Jean-Clément Flayac, Elie Le Quemener, Eric Trably, Nicolas Bernet. Revealing extracellular electron transfer mediated parasitism: energetic considerations. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.7766. ⟨10.1038/s41598-017-07593-y⟩. ⟨hal-01602758⟩
  • L. Hao, A. Bize, D. Conteau, O. Chapleur, S. Courtois, et al.. New insights into the key microbial phylotypes of anaerobic sludge digesters under different operational conditions. Water Research, 2016, 102 (octobre), pp.158-169. ⟨10.1016/j.watres.2016.06.014⟩. ⟨hal-01602845⟩
  • Elie Le Quemener, Mickaël Rimboud, Arnaud Bridier, Céline Madigou, Benjamin Erable, et al.. Biocathodes reducing oxygen at high potential select biofilms dominated by Ectothiorhodospiraceae populations harboring a specific association of genes. Bioresource Technology, 2016, 214 (août), pp.55-62. ⟨10.1016/j.biortech.2016.04.087⟩. ⟨hal-01605052⟩
  • S. Poirier, E. Desmond-Le Quemener, C. Madigou, T. Bouchez, O. Chapleur. Anaerobic digestion of biowaste under extreme ammonia concentration: Identification of key microbial phylotypes. Bioresource Technology, 2016, 207, pp.92-101. ⟨10.1016/j.biortech.2016.01.124⟩. ⟨hal-02604542⟩
  • Mickaël Rimboud, Elie Desmond-Le Quemener, Benjamin Erable, Théodore Bouchez, Alain Bergel. The current provided by oxygen-reducing microbial cathodes is related to the composition of their bacterial community. Bioelectrochemistry, 2015, vol. 102, pp. 42-49. ⟨10.1016/j.bioelechem.2014.11.006⟩. ⟨hal-01149734⟩
  • Mickaël Rimboud, Elie Desmond-Le Quemener, Benjamin Erable, Théodore Bouchez, Alain Bergel. Multi-system Nernst–Michaelis–Menten model applied to bioanodes formed from sewage sludge. Bioresource Technology, 2015, Microbial Fuel Cells, 195, pp.162-169. ⟨10.1016/j.biortech.2015.05.069⟩. ⟨hal-01324124⟩
  • Ariane Bize, Laëtitia Cardona, Elie Desmond-Le Quéméner, Audrey Battimelli, Nelly Badalato, et al.. Shotgun metaproteomic profiling of biomimetic anaerobic digestion processes treating sewage sludge. Proteomics, 2015, 15 (20), pp.3532-43. ⟨10.1002/pmic.201500041⟩. ⟨hal-01536494⟩
  • L. P. Hao, F. Lu, L. Mazeas, Elie Le Quemener, C. Madigou, et al.. Stable isotope probing of acetate fed anaerobic batch incubations shows a partial resistance of acetoclastic methanogenesis catalyzed by Methanosarcina to sudden increase of ammonia level. Water Research, 2015, 69, pp.90-99. ⟨10.1016/j.watres.2014.11.010⟩. ⟨hal-01601478⟩
  • Elise Blanchet, Elie Desmond-Le Quemener, Benjamin Erable, Arnaud Bridier, Théodore Bouchez, et al.. Comparison of synthetic medium and wastewater used as dilution medium to design scalable microbial anodes: Application to food waste treatment. Bioresource Technology, 2015, vol. 185, pp. 106-115. ⟨10.1016/j.biortech.2015.02.097⟩. ⟨hal-01149751⟩
  • A. Bridier, Elie Le Quemener, C. Bureau, P. Champigneux, L. Renvoise, et al.. Successive bioanode regenerations to maintain efficient current production from biowaste. Bioelectrochemistry, 2015, 106 (A), pp.133-140. ⟨10.1016/j.bioelechem.2015.05.007⟩. ⟨hal-01608538⟩
  • Elie Desmond-Le Quéméner, Théodore Bouchez. A thermodynamic theory of microbial growth.. ISME Journal, 2014, 8 (8), pp.1747-51. ⟨10.1038/ismej.2014.7⟩. ⟨hal-00825781v3⟩
  • Elie Le Quemener, S. Gribaldo. Phylogenomics of Sterol Synthesis: Insights into the Origin, Evolution, and Diversity of a Key Eukaryotic Feature. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2009, 1, pp.364-381. ⟨10.1093/gbe/evp036⟩. ⟨hal-01604999⟩

Conference papers23 documents

  • Roland Berthomieu, Maria Fernanda Pérez-Bernal, Elie Desmond-Le Quéméner, Nicolas Bernet, Eric Trably. The “electro-fermentation effect” of Geobacter sulfurreducens co-cultured with Clostridium pasteurianum is not induced by electron transfer. 5th European Meeting of the International Society for Microbial Electrochemistry and Technology, Sep 2021, Girone, Spain. ⟨hal-03361956⟩
  • Nicolas Bernet, Javiera Toledo-Alarcón, Roman Moscoviz, Eric Trably, Elie Desmond‐le Quéméner. Electro-fermentation: how to drive fermentation using electrochemical systems...and IET. BIOCON-CO2 Worshop: Biocatalysis and bioelectrofermentation, Jan 2021, Barcelona, Spain. ⟨hal-03417484⟩
  • Subrata Dev, Tugce Katipoglu-Yazan, Elie Desmond-Le Quéméner, Theodore Bouchez. Non-equilibrium physical principles explain the temperature dependency of microbial growth: theory and experiments. 16ème congrès national de la Société Française de Microbiologie, Sep 2021, Nantes, France. ⟨hal-03361944⟩
  • Elie Desmond-Le Quéméner, Roman Moscoviz, Javiera Belen Toledo-Alarcon, Eric Trably, Nicolas Bernet. Controlling mixed fermentations using interspecies electron transfer? A complex story of microbial interactions. Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice., Nov 2020, Bundang-gu, Seongnam-si, South Korea. ⟨hal-03361922⟩
  • Jérôme Hamelin, Hicham Ouazaite, Elie Desmond-Le Quéméner, Kim Milferstedt. Microscale activities of individual photogranules as a function of light and carbon availabilities. 28th Frontier Scientists Workshop “Korea-France Environmental Biotechnology Workshop: Linking Theory and Practice”, The Korean Academy of Science and Technology, Nov 2020, on-line, South Korea. ⟨hal-03033341⟩
  • Pablo Ugalde-Salas, Jérôme Harmand, Elie Desmond-Le Quéméner. Modelling Interactions of a Microbial Community through an Optimal Tracking Control Approach. 2020 European Control Conference (ECC), May 2020, Sant Petersburg, Russia. pp.587-592, ⟨10.23919/ECC51009.2020.9143828⟩. ⟨hal-02954751⟩
  • Roman Moscoviz, Elie Desmond-Le Quéméner, Eric Trably, Nicolas Bernet. Extracellular electron transfer mediated parasitism, a thermodynamical approach. Predict-it!, Jun 2019, Delft, Netherlands. ⟨hal-02786967⟩
  • Roman Moscoviz, Alain Huyard, Elie Desmond-Le Quéméner, Jiang-Hao Tian, Théodore Bouchez, et al.. Modeling an environmental biorefinery scenario with anaerobic digestion coupled to bioelectrosynthesis: analyzing the requirements for profitability. 16. IWA World Conference on Anaerobic Digestion - AD16, International Water Association (IWA). INT., Jun 2019, Delft, Netherlands. ⟨hal-02737122⟩
  • Hicham Ouazaite, Kim Milferstedt, Jérôme Hamelin, Elie Desmond-Le Quéméner. Mapping the biological activity of a fluffy oxygenic photogranule. 9ème colloque annuel du Réseau National Biofilm, Dec 2019, Nancy, France. ⟨hal-02917616⟩
  • Kim Milferstedt, Esmee Joosten, Hicham Ouazaite, Elie Le Quemener, Jérôme Hamelin. Oxygenic photogranules: from ecology to wastewater treatment. MicrobiOccitanie 2019 - Rencontre des Microbiologistes Région Occitanie, Région Occitanie. FRA., Feb 2019, Montpellier, France. ⟨hal-02791633⟩
  • Pablo Ugalde Salas, Jérôme Harmand, Elie Desmond-Le Quéméner. Asymptotic observers and integer programming for functional classification of a microbial community in a chemostat. ECC19 - 18. European Control Conference, European Control Association (EUCA). International Federation of Automatic Control (IFAC)., Jun 2019, Naples, Italy. pp.1665-1670, ⟨10.23919/ECC.2019.8795854⟩. ⟨hal-02734813⟩
  • Elie Desmond-Le Quéméner. Thermodynamique microbienne et modélisation des écosystèmes microbiens. Journées Nutrition et Ecosystèmes Microbiens - NEM 2018, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., May 2018, Narbonne, France. ⟨hal-02791113⟩
  • Hicham Ouazaite, Esmee Joosten, Elie Le Quemener, Kim Milferstedt, Jérôme Hamelin. Deciphering the role of cyanobacteria for photogranulation through individual based modeling. Bridging theory and practice in ecological engineering, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., Jun 2018, Narbonne, France. ⟨hal-02786936⟩
  • Elie Desmond-Le Quéméner, Jean-Clément Flayac, Eric Trably, Nicolas Bernet. A core-microbiome approach to identify key microbes and interactions in bioanode microbial communities. EU-ISMET 2018, 4. European Meeting of International Society for Microbial Electrochemistry and Technology, International Society for Microbial Electrochemistry and Technology (ISMET). INT., Sep 2018, Newcastle, United Kingdom. ⟨hal-02737302⟩
  • Théodore Bouchez, Hadrien Delattre, Elie Desmond-Le Quéméner, Christian Duquennoi, Ahlem Filali. Consistent microbial dynamics and functional community patterns derived from first physical principles. ISME17 - 17. International Symposium on Microbial Ecology, International Society for Microbial Ecology (ISME). Wageningen, INT., Aug 2018, Leipzig, Germany. ⟨hal-02737163⟩
  • Eric Trably, Elie Desmond-Le Quéméner, Roman Moscoviz, Nicolas Bernet. Interactions microbiennes et transfert d'électrons en fermentation. 2. Journées Recherche-Industrie. Management des ressources microbiennes, Institut National de Recherche Agronomique (INRA). UR Laboratoire de Biotechnologie de l'Environnement (0050)., May 2018, Narbonne, France. ⟨hal-02791282⟩
  • Roman Moscoviz, Florence de Salivet de Fouchécour, Clément Flayac, Elie Desmond-Le Quéméner, Eric Trably, et al.. Interspecies electron transfer mediated parasitism: co-culture of Geobacter sulfurreducens and Clostridium pasteurianum. ISMET 6 - General Meeting of the International Society for Microbial Electrochemistry and Technology, International Society for Microbial Electrochemistry and Technology (ISMET). INT. Instituto de Technologia Quimica e Biologica (ITQB), PRT. Universidade Nova de Lisboa (UNL), PRT., Oct 2017, Lisbonne, Portugal. ⟨hal-02737031⟩
  • A. Foulet, T. Bouchez, E. Desmond Le Quemener, Lynda Aissani. LCA-assisted conception of an innovation bio-molécules production through microbial electrosynthesis of bio-waste. [avniR], Nov 2017, Lille, France. ⟨hal-02607124⟩
  • Elie Desmond-Le Quéméner, Roman Moscoviz, Jean-Clément Flayac, Eric Trably, Nicolas Bernet. Thermodynamics of interspecies electron transfer: from syntrophy to parasitism. 15. IWA World Conference on Anaerobic Digestion (AD-15), International Water Association (IWA). INT., Oct 2017, Beijing, China. ⟨hal-02738013⟩
  • A. Foulet, T. Bouchez, E. Desmond Le Quemener, L. Aissani. Eco-design of an innovative environmental biorefinery to produce added value chemicals from waste. SETAC Europe LCA case study symposium, Sep 2016, Montpellier, France. 1 p. ⟨hal-01463159⟩
  • Arnaud Bridier, Elie Le Quemener, Lenaic Rouillac, Céline Madigou, E. Blanchet, et al.. Combination of bioanode and biocathode for the conversion of wastes into biocommodities using microbial electrosynthesis. 2. European meeting of the International Society for Microbial Electrochemistry and Technology (EU-ISMET 2014), Universidad de Alcalá - University of Alcalá (UAH). ESP., Sep 2014, Alcala de Henares, Spain. ⟨hal-01595413⟩
  • Arnaud Bridier, Elie Desmond-Le Quéméner, Lenaic Rouillac, Celine Madigou, Elise Blanchet, et al.. Combination of bioanode and biocathode for the conversion of wastes into biocommodities using microbial electrosynthesis. 15. International Symposium on Microbial Ecology ISME 15, Aug 2014, Seoul, South Korea. ⟨hal-02743656⟩
  • E. Desmond Le Quemener, T. Bouchez. A thermodynamic theory of microbial growth. 15th International Symposium on Microbial Ecology, Aug 2014, Seoul, South Korea. pp.1747-1751. ⟨hal-02600798⟩

Conference poster6 documents

  • Tugce Katipoglu-Yazan, Subrata Dev, Elie Desmond-Le Quéméner, Theodore Bouchez. What is the link between T, µmax and dissipation as heat during microbial growth?. 16ème congrès national de la Société Française de Microbiologie, Sep 2021, Nantes, France. ⟨hal-03361983⟩
  • Jiang-Hao Tian, Elie Desmond-Le Quéméner, Théodore Bouchez. Towards environmental biorefinery: upscaling of microbial electrosynthesis cell fueled with heterogeneous organic waste. 16. IWA World Conference on Anaerobic Digestion - AD16, Jun 2019, Delft, Netherlands. 2019. ⟨hal-02734194⟩
  • Roland Berthomieu, Elie Desmond-Le Quéméner, Roman Moscoviz, Nicolas Bernet, Eric Trably. Interspecies electron transfer-mediated parasitism? case of fermentations. Electromicrobiology 2019, Mar 2019, Aarhus, Denmark. 2019. ⟨hal-02787132⟩
  • Pablo Ugalde Salas, Jérôme Harmand, Elie Desmond-Le Quéméner. Microbial interactions in a two step nitrification process : Modeling, stability analysis, and application. Workshop international Bridging theory and practice in ecological engineering, Jun 2018, Narbonne, France. 2018. ⟨hal-02786791⟩
  • Arnaud A. Bridier, E. Desmond-Le Quemener, L. Rouillac, C. Madigou, E. Blanchet, et al.. Combination of bioanode and biocathode for the conversion of wastes into biocommodities using microbial electrosynthesis. 2nd European meeting of the International Society for Microbial Electrochemistry and Technology, Sep 2014, Madrid, Spain. pp.1, 2014. ⟨hal-02600696⟩
  • E. Desmond Le Quemener, T. Bouchez. A thermodynamic theory of microbial growth and its implications for the study of isotopic fractionation. 15th International Symposium on Microbial Ecology, Aug 2014, Seoul, South Korea. The International Society for Microbial Ecology, pp.1, 2014. ⟨hal-02600695⟩

Book sections2 documents

  • Roman Moscoviz, Elie Desmond-Le Quéméner, Eric Trably, Nicolas Bernet. Bioelectrochemical systems for the valorization of organic residues: Chapter 21. Biorefinery, Springer Nature Switzerland AG, 763 p., 2019, 978-3-030-10960-8. ⟨10.1007/978-3-030-10961-5_21⟩. ⟨hal-02786494⟩
  • Elie Desmond-Le Quéméner, Théodore Bouchez. Fiche application Déchets 7 : Optimisation des biopiles microbiennes : comment sélectionner des microorganismes efficaces sur les biocathodes. La microbiologie moléculaire au service du diagnostic environnemental, ADEME, 174 p., 2017, 979-10-297-0485-7. ⟨hal-02786495⟩

Patents1 document

  • Théodore Bouchez, Arnaud Bridier, Elie Le Quemener. Procédé et dispositif de régulation de l'activité d'un système bioélectrochimique comportant à la fois une bioanode et une biocathode. France, N° de brevet: WO 2016/051064 A1. 2016, 35 p. ⟨hal-01605836⟩

Preprints, Working Papers, ...1 document

  • Jiang-Hao Tian, Rémy Lacroix, Elie Desmond-Le Quéméner, Chrystelle Bureau, Cedric Midoux, et al.. Upscaling of Microbial Electrolysis Cell Integrating Microbial Electrosynthesis: Insights, Challenges and Perspectives. {date}. ⟨hal-02869915⟩