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Postdoc in the Mathematics of Imaging and AI group, University of Twente (The Netherlands).
Researcher identifiers


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ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont
Computer Methods and Programs in Biomedicine, 2022, 220, pp.106818. ⟨10.1016/j.cmpb.2022.106818⟩
Journal articles hal-03351976v2
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Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder

Clément Chadebec , Elina Thibeau-Sutre , Ninon Burgos , Stéphanie Allassonnière
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022, ⟨10.1109/TPAMI.2022.3185773⟩
Journal articles hal-03214093v1
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Deep learning for brain disorders: from data processing to disease treatment

Ninon Burgos , Simona Bottani , Johann Faouzi , Elina Thibeau-Sutre , Olivier Colliot
Briefings in Bioinformatics, 2021, 22 (2), pp.1560-1576. ⟨10.1093/bib/bbaa310⟩
Journal articles hal-03070554v1
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Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic, Quantitative and Critical Review

Manon Ansart , Stéphane Epelbaum , Giulia Bassignana , Alexandre Bône , Simona Bottani
Medical Image Analysis, 2021, 67, pp.101848. ⟨10.1016/⟩
Journal articles hal-02337815v2
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Clinica: an open source software platform for reproducible clinical neuroscience studies

Alexandre Routier , Ninon Burgos , Mauricio Diaz , Michael Bacci , Simona Bottani
Frontiers in Neuroinformatics, 2021, 15, pp.689675. ⟨10.3389/fninf.2021.689675⟩
Journal articles hal-02308126v4
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Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge

Baptiste Couvy-Duchesne , Johann Faouzi , Benoît Martin , Elina Thibeau-Sutre , Adam Wild
Frontiers in Psychiatry, 2020, 11, ⟨10.3389/fpsyt.2020.593336⟩
Journal articles hal-03136463v1
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Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation

Junhao Wen , Elina Thibeau-Sutre , Mauricio Diaz-Melo , Jorge Samper-González , Alexandre Routier
Medical Image Analysis, 2020, 63, pp.101694. ⟨10.1016/⟩
Journal articles hal-02562504v2
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How can data augmentation improve attribution maps for disease subtype explainability?

Elina Thibeau-Sutre , Jelmer M Wolterink , Olivier Colliot , Ninon Burgos
SPIE Medical Imaging, Feb 2023, San Diego, United States
Conference papers hal-03966737v1
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MRI field strength predicts Alzheimer's disease: a case example of bias in the ADNI data set

Elina Thibeau-Sutre , Baptiste Couvy-Duchesne , Didier Dormont , Olivier Colliot , Ninon Burgos
ISBI 2022 - International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. ⟨10.1109/ISBI52829.2022.9761504⟩
Conference papers hal-03542213v1
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Advances in the Clinica software platform for clinical neuroimaging studies

Omar El Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Conference papers hal-03728243v1
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Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont
SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, United States. pp.576-582, ⟨10.1117/12.2608565⟩
Conference papers hal-03478798v1

Forecast Alzheimer's disease progression to better select patients for clinical trials

Etienne Maheux , Juliette Ortholand , Colin Birkenbihl , Elina Thibeau-Sutre , Meemansa Sood
ISCB 2021: 42nd Conference of the International Society for Clinical Biostatistics, Jul 2021, Online, France
Conference papers hal-03483237v1
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Clinica: an open-source software platform for reproducible clinical neuroscience studies

Omar El-Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier
MRI Together 2021 - A global workshop on Open Science and Reproducible MR Research, Dec 2021, Online, France
Conference papers hal-03513920v1
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New longitudinal and deep learning pipelines in the Clinica software platform

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jorge Samper-González , Adam Wild
OHBM 2020 - Annual meeting of the Organization for Human Brain Mapping, Jun 2020, Montreal / Virtual, Canada
Conference papers hal-02549242v1
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Visualization approach to assess the robustness of neural networks for medical image classification

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
SPIE Medical Imaging 2020, Feb 2020, Houston, United States. ⟨10.1117/12.2548952⟩
Conference papers hal-02370532v3
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New advances in the Clinica software platform for clinical neuroimaging studies

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jérémy Guillon , Jorge Samper-González
OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨10.1016/j.neuroimage.2011.09.015⟩
Conference papers hal-02132147v2
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How serious is data leakage in deep learning studies on Alzheimer's disease classification?

Junhao Wen​ , Elina Thibeau--Sutre​ , Jorge Samper-González​ , Alexandre M Routier , Simona Bottani​
2019 OHBM Annual meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Conference papers hal-02105133v2
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Interpretability of Machine Learning Methods Applied to Neuroimaging

Elina Thibeau-Sutre , Sasha Collin , Ninon Burgos , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, inPress
Book sections hal-03615163v1