Elisabetta Giuffra
Publications
Publications
RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression !World Poultry Congress (WPC) 2022, Aug 2022, Paris, France |
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The EU-H2020 Project GENE-Switch (The regulatory GENomE of SWine and CHicken: functional annotation during development)The Plant and Animal Genome XXVII Conference (PAG), Jan 2020, San Diego, United States |
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An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissuesPAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States |
Chromatin accessibility conservation across four livestock speciesConference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Llieda, Spain |
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FR-Agencode: An UpdateThe Plant and Animal Genome XXVII Conference (PAG), Jan 2019, San Diego, United States |
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Functional annotation of livestock genomes: chromatin structure and regulation of gene expressionASAS/ASDS Midwest Joint Meeting, Mar 2019, Omaha, United States. ⟨10.1093/jas/skz122.028⟩ |
Multi-level conservation of chromosome conformation across livestock species reveals evolutionary links between genome structure and functionConference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Lleida, Spain |
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Introduction to functional annotation of animal genomes consortium2019 ASAS Midwest Meeting, American Society of Animal Science (ASAS); American Dairy Science Association (ADSA), Jul 2019, Inconnue, France. pp.17, ⟨10.1093/jas/skz122.031⟩ |
Generating 3D organoid-like structures from porcine induced pluripotent-like cells in vitro.11. Symposium of the French Domestic Animal Immunology Network,, Mar 2018, Tours, France |
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Profiling the landscape of transcription and chromatin conformation reveals regulatory mechanisms involved in immune and metabolic functions3. Journée de Séminaires du Département Phase sur l'Epigénétique EpiPhase, May 2017, Jouy-en-Josas, France |
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RNA silencing-targeted transcriptome of porcine alveolar macrophages upon infection with porcine reproductive and respiratory syndrome viruses (PRRSV) of different virulence35. Conference of the International Society for Animal Genetics (ISAG), Jul 2016, Salt Lake City, Utah, United States. 197 p |
Functional Analysis of microRNAs:mRNA Interactions Between Pseudorabies Virus (PrV) and Its Natural Pig Host24. Plant and Animal Genome Conference (PAG), Jan 2016, San Diego, United States |
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Perspective of FAANG (Functional Annotation of Animal Genomes)AGRI Research workshops, Oct 2016, Bruxelles, Belgium |
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Chromatin Accessibility in Porcine Liver, Spleen and Circulating Immune CellsXXIV PAG - Plant and Animal Genome Conference, Jan 2016, San Diego, United States |
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Chromatin accessibility in the liver and circulating immune cells of pigs, cattle, goats and chickensLivestock Genomics Workshop, Sep 2016, Cambridge, United Kingdom |
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Investigating the nuclear spatial conformation of livestock genomes using Hi-CNGS'16 Genome Annotation, Apr 2016, Barcelone, Spain |
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Chromatin accessibility in the liver and circulating immune cells of pigs, goats and chickens35. Conference of the International Society for Animal Genetics (ISAG), Jul 2016, Salt Lake City, United States. ⟨10.2134/jas2016.94supplement471a⟩ |
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Profiling the Nuclear Spatial Conformation of Livestock Genomes in Cell Lines and Liver CellsPAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States. Non paginé |
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The Functional Annotation of Animal Genomes (FAANG) InitiativePlant and Animal Genome (PAG), Jan 2015, San Diego, United States |
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Les microARN circulants : de nouveaux biomarqueurs pour des caractères économiquement importants chez les poules ?11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. pp.1-5 |
FR-AgENCODE: A Pilot Project to Improve the Functional Annotation of Livestock GenomesPlant and Animal Genome (PAG), Jan 2015, San Diego, United States |
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Update on the Functional Annotation of ANimal Genomes (FAANG) initiativeFinal RGB-Net Meeting and 6th Rabbit Biotechnology Meeting, Nov 2015, Lyon, France |
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Impact of the genetic background on the composition of the chicken plasma miRNome in response to a stressLivestock genomics workshop, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Sep 2014, Cambridge, United Kingdom |
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Functional analysis of candidate interactions between miRNAs encoded by the pseudorabies virus (PrV) and pig genes.34. International Society for Animal Genetics Conference (ISAG), Jul 2014, Xi'An, China |
MicroRNA technology, relevance and applicationEADGENE-S final meeting, May 2013, Bruxelles, Belgium |
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Functional genomics of Pseudorabies in pigs: a model for host-pathogen interaction studies15. Séminaire des Thésards du département Génétique Animale, Institut National de la Recherche Agronomique (INRA). Paris, FRA., Mar 2012, Ile d'Oléron, France. pp.1 |
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MiRNA targeting in host-virus interaction: inter-strain comparison in Pseudorabies Virus (PrV)33. Conference of the International Society of Animal Genetics, Cairns Conference. Cairns, AUS., Jul 2012, Cairns, Australia. 1 p |
In silico prediction of microRNAs targeting alleles of the Swine Leukocyte Antigen complexISAFG 2011, Oct 2011, Dublin, Ireland |
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Community annotation of immunity-related genes in the pig genome4. International Symposium on Animal Functional Genomics, Oct 2011, Dublin, Ireland |
microRNA target prediction and 3'UTR polymorphism in swineRNAi World Congress, Apr 2011, Boston, United States |
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miRNA discovery in Sus scrofa and in the Pseudorabies virus through a deep sequencing approachPig Genome III Conference, A celebration for completing the pig genome sequence, 2009, Hinxton, United States |
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Exploring the host-virus miRNAs regulation layer: pig dendritic cells (DCs) infected by PrV (Pseudorabies virus)EADGENE, Mar 2008, Liège, Belgium. n.p |
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Exploring the host-virus miRNA regulation layer: pig dendritic cells (DCs) infected by PrV (pseudorabies virus)Pig Genome II Conference, 2008, Ljubljana, Slovenia |
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Towards a genomic platform for analysis of wild boar and suiforme diversity and evolution.7th International Symposium on Wild Boar (Sus scrofa) and on Sub-order Suiformes, 2008, Sopron, pp.Inconnu |
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Setting up transfection protocols on porcine gut organoids3D models in Biology Symposium, Jun 2024, Domaine du Haut-Carré, Talence, France |
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Setting up transfection protocoles on porcine gut organoidsLivestock genomics, Mar 2024, Online, France |
Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomesEuropean Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018 |
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Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
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Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
Une nouvelle facette du génome de poule : les genes “longs non-codants12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras |
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book |
Long-non coding RNAs repertoire in liver and adipose tissue in chickenXXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016 |
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Sampling tissue for FAANG: the example of cattle and chickens in FranceGO-FAANG Workshop, Oct 2015, Washington DC, United States. , 1 p., 2015 |
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miRNA-mediated regulation: learning from Pseudorabies virus infected pigsInternational Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States. 2014 |
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Understanding the complex interaction between pseudorabies virus (PrV) and its natural host using RIP-Chip enrichment analysis34. International Society for Animal Genetics Conference (ISAG), Jul 2014, Xi'An, China. 2014, Proceedings of the 34th International Society for Animal Genetics Conference |
Structural and functional annotation of immunity-related genes in the pig genome20. Plant and Animal Genome Conference, Jan 2012, San Diego, United States. 2012 |
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Annotation of the immunity-related genes in the pig genome32nd Conference of the International Society of Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010 |
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Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig2018 |
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GENE-SWitCH - Book of AbstractsConsortium H2020 GENE-SWitCH. 2023 |
Implementing a program of host genomics of key host-pathogen systems in livestockLife Sciences [q-bio]. Université de Versailles Saint-Quentin-en-Yvelines, 2014 |