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Florent Murat

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Publications

The molecular evolution of spermatogenesis across mammals

Florent Murat , Noe Mbengue , Sofia Boeg Winge , Timo Trefzer , Evgeny Leushkin et al.
Nature, 2023, 613, pp.308-316. ⟨10.1038/s41586-022-05547-7⟩
Journal articles hal-03910315v1

Exploring the rapid evolution of the mammalian testis

Noe Mbengue , Florent Murat
Journal articles hal-03910316v1
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auts2 Features and Expression Are Highly Conserved during Evolution despite Different Evolutionary Fates Following Whole Genome Duplication

Constance Merdrignac , Antoine Clement , Jérôme Montfort , Florent Murat , Julien Bobe et al.
Cells, 2022, 11 (17), pp.2694. ⟨10.3390/cells11172694⟩
Journal articles hal-03777731v1

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution

Daniel Lang , Kristian Ullrich , Florent Murat , Jörg Fuchs , Jerry Jenkins et al.
Plant Journal, 2018, 93 (3), pp.515 - 533. ⟨10.1111/tpj.13801⟩
Journal articles hal-01760352v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat et al.
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Journal articles hal-01820559v1

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

Hélène Badouin , Jerome Gouzy , Christopher Grassa , Florent Murat , S Evan Staton et al.
Nature, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩
Journal articles hal-01603287v1

Reconstructing the genome of the most recent common ancestor of flowering plants

Florent Murat , Alix Armero Villanueva , Caroline Pont , Christophe C. Klopp , Jerome Salse et al.
Nature Genetics, 2017, 49, pp.490-496. ⟨10.1038/ng.3813⟩
Journal articles hal-01605642v1

Reconciling the evolutionary origin of bread wheat (Triticum aestivum)

Moaine El Baidouri , Florent Murat , Maeva Veyssière , Mélanie Molinier , Raphaël-Gauthier Flores et al.
New Phytologist, 2016, 213 (3), ⟨10.1111/nph.14113⟩
Journal articles hal-01361976v1
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Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015)

Florent Murat , Alexandra Louis , Florian Maumus , Alix Armero , Richard Cooke et al.
Genome Biology, 2016, 17 (64), ⟨10.1186/s13059-016-0887-2⟩
Journal articles hal-02630062v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe et al.
Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩
Journal articles hal-01579667v1
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Understanding Brassicaceae evolution through ancestral genome reconstruction

Florent Murat , Alexandra Louis , Florian Maumus , Alix Armero Villanueva , Richard Cooke et al.
Genome Biology, 2015, 16 (262), ⟨10.1186/s13059-015-0814-y⟩
Journal articles hal-01281832v1

FRIZZY PANICLE drives supernumerary spikelets in bread wheat (T. aestivum L.)

Oxana Dobrovolskaya , Caroline Pont , Richard Sibout , Petr Martinek , Ekaterina Badaeva et al.
Plant Physiology, 2015, 167 (1), pp.189-199. ⟨10.1104/pp.114.250043⟩
Journal articles hal-01204099v1
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Isabelle Lesur , Grégoire G. Le Provost , Pascal Bento , Corinne da Silva , Jean-Charles Leplé et al.
BMC Genomics, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩
Journal articles hal-02285504v1
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Evidence of intense chromosomal shuffling during conifer evolution

Marina de Miguel , Jérôme Bartholome , François Ehrenmann , Florent Murat , Yoshinari Moriguchi et al.
Genome Biology and Evolution, 2015, 7 (10), pp.evv185. ⟨10.1093/gbe/evv185⟩
Journal articles hal-02285512v1

GenomicusPlants: a web resource to study genome evolution in flowering plants

Alexandra Louis , Florent Murat , Jerome Salse , Hugues Roest Crollius
Plant and Cell Physiology, 2015, 56 (1), pp.e4. ⟨10.1093/pcp/pcu177⟩
Journal articles hal-01168460v1
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Karyotype and Gene Order Evolution from ReconstructedExtinct Ancestors Highlight Contrasts in Genome Plasticity ofModern Rosid Crops

Florent Murat , Rongzhi R. Zhang , Sébastien Guizard , Haris Gavranovic , Raphael Flores et al.
Genome Biology and Evolution, 2015, 7 (3), pp.735-749. ⟨10.1093/gbe/evv014⟩
Journal articles hal-01133906v1

Paleogenomics in Triticeae for translational research

Florent Murat , Caroline Pont , Jérôme Salse
Current Plant Biology, 2014, 1, pp.34-39. ⟨10.1016/j.cpb.2014.08.003⟩
Journal articles hal-02285486v1
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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

G Albert Wu , Simon Prochnik , Jerry Jenkins , Jérôme Salse , Uffe Hellsten et al.
Nature Biotechnology, 2014, 32 (7), pp.656-662. ⟨10.1038/nbt.2906⟩
Journal articles hal-02285484v1
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Paleo-evolutionary plasticity of plant disease resistance genes

Rongzhi R. Zhang , Florent Murat , Caroline Pont , Thierry Langin , Jerome Salse et al.
BMC Genomics, 2014, 15 (1), pp.187. ⟨10.1186/1471-2164-15-187⟩
Journal articles hal-02285469v1
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The genome of Eucalyptus grandis

Alexander Myburg , Dario Grattapaglia , Gerald Tuskan , Uffe Hellsten , Richard Hayes et al.
Nature, 2014, 510 (7505), pp.356-362. ⟨10.1038/nature13308⟩
Journal articles hal-02285478v1

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

Shaogui Guo , Jianguo Zhang , Honghe Sun , Jerome Salse , William J. Lucas et al.
Nature Genetics, 2013, 45 (1), pp.51 - U82. ⟨10.1038/ng.2470⟩
Journal articles hal-01190670v1
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Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes

Caroline C. Pont , Florent Murat , Sébastien S. Guizard , Raphaël-Gauthier R.-G. Flores , Séverine S. Foucrier et al.
Plant Journal, 2013, pp.1-29. ⟨10.1111/tpj.12366⟩
Journal articles hal-00964421v1
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Shared sub-genome dominance following polyploidization explains grass genome evolutionary plasticity from a 7 protochromosome ancestor with 16K protogenes

Florent Murat , Rongzhi R. Zhang , Sébastien S. Guizard , Raphaël-Gauthier R.-G. Flores , Alix A. Armero Villanueva et al.
Genome Biology and Evolution, 2013, 6 (1), pp.12-33. ⟨10.1093/gbe/evt200⟩
Journal articles hal-00964190v1

Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes.

Florent Murat , Rongzhi Zhang , Sébastien Guizard , Raphael Flores , Alix Armero et al.
Genome Biology and Evolution, 2013, 6 (1), pp.12-33
Journal articles hal-01218128v1
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Decoding Plant and Animal Genome Plasticity from Differential Paleo-Evolutionary Patterns and Processes

Florent Murat , Yves Y. van de Peer , Jerome J. Salse
Genome Biology and Evolution, 2012, 4 (9), pp.917 - 928. ⟨10.1093/gbe/evs066⟩
Journal articles hal-00964328v1

Grass MicroRNA Gene Paleohistory Unveils New Insights into Gene Dosage Balance in Subgenome Partitioning after Whole-Genome Duplication

Michaël M. Abrouk , Rongzhi R. Zhang , Florent Murat , Aili A. Li , Caroline C. Pont et al.
The Plant cell, 2012, 24 (5), pp.1776 - 1792. ⟨10.1105/tpc.112.095752⟩
Journal articles hal-00964371v1
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Comparative mapping in the Fagaceae and beyond with EST-SSRs

Catherine Bodenes-Brezard Bodénès , Emilie E. Chancerel , Oliver O. Gailing , Giovanni G. G. G. Vendramin , Francesca F. Bagnoli et al.
BMC Plant Biology, 2012, 12 (153), 40 p. ⟨10.1186/1471-2229-12-153⟩
Journal articles hal-00964224v1
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Deciphering the genomic structure, function and evolution of carotenogenesis related phytoene synthases in grasses

Bianca Dibari , Florent Murat , Audrey Chosson , Véronique Gautier , Charles C. Poncet et al.
BMC Genomics, 2012, 13 (1), pp.221. ⟨10.1186/1471-2164-13-221⟩
Journal articles hal-02285438v1

Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.)

Umar Masood Quraishi Masood-Quraishi , Florent Murat , Michaël M. Abrouk , Caroline C. Pont , Carole C. Confolent et al.
Functional and Integrative Genomics, 2011, 11 (1), pp.71 - 83. ⟨10.1007/s10142-010-0183-2⟩
Journal articles hal-00964164v1
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RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.)

Caroline Pont , Florent Murat , Carole Confolent , Sandrine Balzergue , Jerome Salse et al.
Genome Biology, 2011, 12 (12), ⟨10.1186/gb-2011-12-12-r119⟩
Journal articles hal-01190508v1

Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.

Amandine A. Bordat , Vincent V. Savois , Marie M. Nicolas , Jerome J. Salse , Aurelie A. Chauveau et al.
G3, 2011, 1 (juillet), pp.93-103. ⟨10.1534/g3.111.000349⟩
Journal articles hal-00964213v1

The genome of Theobroma cacao.

Xavier Argout , Jerome Salse , Jean-Marc Aury , Mark J Guiltinan , Gaetan Droc et al.
Nature Genetics, 2011, 43 (2), pp.101-8. ⟨10.1038/ng.736⟩
Journal articles hal-00855922v1
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Unlocking the barley genome by chromosomal and comparative genomics

Klaus F. X. K. F. X. Mayer , Mihaela M. Martis , Pete E. P. E. Hedley , Hana H. Simkova , Hui H. Liu et al.
The Plant cell, 2011, 23 (4), pp.1249-1263. ⟨10.1105/tpc.110.082537⟩
Journal articles hal-00964348v1

Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution

Umar Masood Quraishi Masood-Quraishi , Michaël M. Abrouk , Florent Murat , Caroline C. Pont , Séverine S. Foucrier et al.
Plant Journal, 2011, 65 (5), pp.745 - 756. ⟨10.1111/j.1365-313X.2010.04461.x⟩
Journal articles hal-00964149v1

Palaeogenomics of plants: synteny-based modelling of extinct ancestors.

Michael Abrouk , Florent Murat , Caroline Pont , Joachim Messing , Scott Jackson et al.
Trends in Plant Science, 2010, 15 (9), pp.479-87. ⟨10.1016/j.tplants.2010.06.001⟩
Journal articles hal-00681093v1

Genome sequencing and analysis of the model grass Brachypodium distachyon

Jerome J. Salse , Florent Murat , Michaël M. Abrouk , Elisabeth E.J. Chapman , Richard R. Sibout et al.
Nature, 2010, 463, pp.763-768. ⟨10.1038/nature08747⟩
Journal articles hal-00964370v1
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Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Saneyoshi Ueno , Grégoire Le Provost , Valérie Léger , Christophe C. Klopp , Céline Noirot et al.
BMC Genomics, 2010, 11, pp.650. ⟨10.1186/1471-2164-11-650⟩
Journal articles hal-00645933v1

Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

Florent Murat , Jian-Hong Xu , Eric Tannier , Michael Abrouk , Nicolas Guilhot et al.
Genome Research, 2010, 20 (11), pp.1545-57. ⟨10.1101/gr.109744.110⟩
Journal articles hal-00680636v1

Improved criteria and comparative genomics tool provide new insights into grass paleogenomics

Jerome J. Salse , Michaël M. Abrouk , Florent Murat , Umar Masood Quraishi Masood-Quraishi , Catherine C. Feuillet et al.
Briefings in Bioinformatics, 2009, 10 (6), pp.619-630. ⟨10.1093/bib/bbp037⟩
Journal articles hal-00964321v1
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Integrating TGF-beta signalling pathways and epigenetic modulations for controlling sex determination in medaka

Alexandra Depince , Florent Murat , Mateus Contar Adolfi , Violette Thermes , Yann Guiguen et al.
2. European Symposium on Sex Determination in Vertebrates, Oct 2022, Giens, France
Conference papers hal-03833209v1

The molecular evolution of spermatogenesis across mammals

Florent Murat
2. European Symposium on Sex Determination in Vertebrates, Oct 2022, Hyères, France
Conference papers hal-03910317v1
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An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury et al.
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Conference papers hal-01839185v1

Oak genome sequencing and evolution

Jerome J. Salse , Jean Marc Aury , Florent Murat , Sébastien Faye , Karine Labadie et al.
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02741698v1
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Evidence of intense chromosomal shuffling during conifer evolution

Marina de Miguel , Jérôme Bartholome , François Ehrenmann , Florent Murat , Yoshinari Moriguchi et al.
ProCoGen final open conference, Promoting Conifer Genomic Resources, Nov 2015, Orléans, France. 75 p
Conference papers hal-02741312v1

Bioinformatic analysis of Sanger and 454 ESTs in oak

Saneyoshi S. Ueno , Grégoire G. Le Provost , Valérie V. Léger , Christophe C. Klopp , Celine C. Noirot et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73
Conference papers hal-00964385v1

Etude de la plasticité évolutive et structurale des génomes de plantes

Florent Murat
Sciences du Vivant [q-bio]. Université Blaise Pascal (Clermont Ferrand 2), 2016. Français. ⟨NNT : ⟩
Theses tel-02796944v1