Frédéric Choulet
- Génétique Diversité et Ecophysiologie des Céréales (GDEC)
Présentation
Frédéric Choulet est Ingénieur de Recherche du département Biologie et Amélioration des Plantes d’INRAE. Après une thèse à l’Université de Nancy en génomique bactérienne, il a rejoint l’unité GDEC (Génétique, Diversité, Ecophysiologie des Céréales) UMR INRAE-Université Clermont Auvergne en 2007 en postdoc puis en tant qu’IR en 2009. Sa spécialité est la bioinformatique des génomes. Il a été impliqué dans le séquençage du génome du blé tendre, une espèce hexaploïde au génome complexe, dans le cadre d’une initiative internationale qui a mobilisé la communauté scientifique fédérée au sein du consortium IWGSC. Au-delà des aspects méthodologiques, des développements bioinformatiques, Frédéric mène des recherches qui visent à caractériser la composition du génome et surtout sa variabilité aux échelles inter- et intra-spécifiques. Il s’intéresse notamment aux éléments transposables, à leur dynamique évolutive, leur contribution à la variabilité génomique et à l’adaptation chez cette espèce.
Compétences
Publications
Publications
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Preliminary Results from the IWGSC Wheat Diversity ProjectPAG 33, Jan 2026, San diego, United States |
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Wheat genomics of immunity using Kinnex™ Full-length RNAsColloque INRAE Genomics, Plateforme Gentyane, Jun 2025, Clermont-Ferrand, France |
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Dynamics of transposable elements in the hexaploid wheat genomeConference Jacques Monod - Evolutionary and ecological genomics of polyploidy in plants, Malika Ainouche, Jonathan Wendel, Sep 2025, Roscoff, France |
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Sequencing complex genomes of TriticeaePacbio PRISM 2024, Pacbio, Apr 2024, Lisbonne, Portugal |
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CONTROLLING HOMOLOGOUS AND HOMOEOLOGOUS RECOMBINATION IN BREAD WHEAT TO ENHANCE THE DEVELOPMENT OF ORIGINAL AND PRODUCTIVE WHEAT VARIETIESInternational Wheat Conference, Encanta Events, Sep 2024, Perth, Australia |
Wheat genome sequenceRegeneCrop Meeting, UMR GDEC, INRAE-UCA, Jun 2023, Clermont-Ferrand, France |
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Sequencing complex genomes of wheat wild relativesGentyane Revio Launch Day, Pacbio, Dec 2023, Clermont-Ferrand, France |
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Genome Bioinformatics at GDECAuBi-NGS Annual Meeting, AuBi - Auvergne Bioinformatique, Dec 2022, Clermont-Ferrand, France |
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Sequencing the genome of the French wheat variety RenanIWGSC Webinar, IWGSC - International Wheat Genome Sequencing Consortium, Sep 2022, Clermont-Ferrand, France |
Annotation des gènes et des éléments transposables chez le bléRencontres Science et Partenariat, Plant2Pro Institut Carnot, Jun 2022, Paris, France |
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Sequencing, annotation, and pangenomics in wheatWebinaire de l'AFBV, Association Française des Biotechnologies Végétales, May 2022, Clermont-Ferrand, France |
IWGSC RefSeq v2.1 AnnotationPlant and Animal Genome 2020, Sherago, Jan 2020, San diego (Californie), United States |
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Structural Variations and Dynamics of Transposable Elements in the Wheat GenomeJournée Pangénomique Végétale, GIS Biologie Végétale, Jul 2019, Paris, France |
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Dynamics of transposable elements in the 16 Gb hexaploid wheat genomeCongrès National des Eléments Transposables (CNET) 2018, Jul 2018, Clermont-Ferrand, France |
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Dynamics of transposable elements in the 16 Gb hexaploid wheat genomeJournée annotation structurale et fonctionnelle des génomes eukaryotes, Nov 2018, Paris, France |
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The reference sequence for the bread wheat genomePAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States |
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectivesPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides |
Challenges of gene and repeat annotation of the wheat genome sequencePlant and Animal Genome XXV Conference; IWGSC Standards and Protocoles Workshop, 2017, San Diego, CA, United States |
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The IWGSC Reference genome browser, data mining and beyondPAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States |
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Identifying sequence features impacting recombination in wheat: lessons from chromosome 3B13. Int. Wheat Genet. Symp, Apr 2017, Tulln, France |
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Positional cloning of a QTL, qDHY.3BL, on chromosome 3BL for drought and heat tolerance in bread wheatPlant and Animal Genomie Conference XXIV, Jan 2016, San Diego, United States |
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Bread wheat whole genome sequence assemblyColloque EPGV 2016, Détection Gestion et Analyse du Polymorphisme des Génomes Végétaux, Oct 2016, Angers, France |
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Unlocking the cross-incompatibility between wheat and rye?24. International Congress on Sexual Plant Reproduction, International Association of Sexual Plant Reproduction Research (IASPRR). RUS., Mar 2016, Tucson, United States |
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Assessing structural variations of the hexaploid wheat genomePlant and Animal Genome XXIV Conference; Trticeae Genetics and Genomics Workshop, Jan 2016, San Diego, CA, United States |
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Structure and dynamics of the hexaploid wheat genomeTGAC Seminar, Genome Analysis Centre (TGAC). GBR., Jan 2016, Norwich, United Kingdom |
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Sequencing and Analysis of Wheat Chromosome 1BPlant and Animal Genome XXIV Conference; IWGSC Standards and Protocoles Workshop, Jan 2016, San Diego, United States |
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IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheatPAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States |
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Overview of Actual and Ancestral Recombination in Relationship with the Sequence in Wheat: Focus on 3B ChromosomePlant and Animals Genomics Conference XXIV / Recombination Mechanism Workshop, Jan 2016, San Diego, United States |
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Exploitation of the 5BS physical map to complete the SKr crossability locus24. Plant and Animal Genome Conference (PAG XXIV), Scherago International Inc. USA., Jan 2016, San Diego, United States. 1 p |
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A reference sequence of bread wheat chromosome 3BJOBIM Journées Ouvertes en Biologie, Informatique et Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France |
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Wheat genome sequencing: initiatives, resources, knowledgeSéminaire du Groupe Céréales, Institut National de Recherche Agronomique (INRA). UMR Génétique Diversité et Ecophysiologie des Céréales (1095)., Apr 2015, Clermont-Ferrand, France |
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Structure and evolution of the wheat genomeSeminar GReD, Feb 2015, Clermont-Ferrand, France |
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IWGSC sequence repository : how to facilitate pseudomolecule assembly?PAG XXIII - Plant and Animal Genome Conference, Jan 2015, San Diego, United States |
Structural variations along the bread wheat genome3. Plant Genomics Congress, May 2015, London, United Kingdom |
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Structural variations of the hexaploid wheat chromosome 3B9. International Wheat Conference, ICMS Australasia. AUS., Sep 2015, Sydney, Australia. 195 p |
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A reference sequence of wheat chromosome 3B3. Plant Genomics Congress, May 2015, London, United Kingdom |
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Characterization of recombination hot spots in bread wheat: Example of chromosome 3BWorkshop Series DynaGeV (Dynamique des Génomes Végétaux), May 2015, Toulouse, France |
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Assembling a pseudomolecule for a wheat chromosome: the 3B experience22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States |
A reference sequence of wheat chromosome 3BSéminaire du Département de Biologie et Amélioration des Plantes, Apr 2014, Pont Royal en Provence, France |
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The IWGSC: Strategies and activities to sequence the bread wheat genomePlant Genomes' Day, Institut National de Recherche Agronomique (INRA). US Centre National de Ressources Génomiques Végétales (1258)., Jun 2014, Toulouse, France |
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A reference sequence of wheat chromosome 3B22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States |
Impact des caractéristiques de la séquence sur la localisation des points chauds de recombinaison et la répartition du déséquilibre de liaison le long du chromosome 3B du blé tendreSéminaire Selgen, Dec 2014, Paris, France |
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Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3BIWGSC Wheat Genome Sequencing Strategy and Funding Workshop, International Wheat Genome Sequencing Consortium (IWGSC). USA., Apr 2013, Evry, France |
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Séquençage, assemblage et analyse du chromosome 3B du blé tendreSéminaire INRIA Symbiose, Institut National de Recherche en Informatique et en Automatique (INRIA). FRA., Feb 2013, Rennes, France |
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3BTGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom |
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Towards a reference sequence of the 1 Gb wheat chromosome 3B16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, United States |
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Report on sequencing the wheat chromosome 3B19. Plant and Animal Genome Conference, Jan 2011, San Diego, Californie, United States. 1 p |
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Sequencing and Analyses of the Hexaploid Wheat Chromosome 3B19. Conference on Plant and Animal Genome, Jan 2011, San Diego, CA, United States |
Sequencing and molecular analysis of a 12 cM locus carrying multiple durable disease resistance genes on chromosome 3BS in hexaploid wheatSéminaire Génoplante 2010, Mar 2010, Mallemort de Provence, France |
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Sequencing and analyses of the hexaploid wheat chromosome 3B10. conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom |
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Towards sequencing the 1 Gb wheat chromosome 3B1. Workshop of StatSeq COST Action TD0801, Oct 2009, Barcelona, Spain |
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Sequencing, annotation and characterization of 17 Mb of chromosome 3B contigs provide novel insights into the wheat genome organization and evolution19. International Triticeae Mapping Initiative - 3rd COST Tritigen, 2009, Clermont-Ferrand, France |
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The wheat genome: swimming in an ocean of transposable elementsICTE 2008: International Congress on Transposable Elements, Apr 2008, Saint Malo, France |
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Sequencing and analysis of megabase-sized genomic regions from wheat16. Plant and Animal Genome Conference, Jan 2008, San Diego, Californie, United States |
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Sequence analyses of Megabase-sized contigs of the wheat genome2. Workshop on TritiGEN. COST Action FA604, Apr 2008, Albena, Bulgaria |
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Structural and Functional Annotation of the Wheat GenomeRudi Appels, Kellye Eversole, Catherine Feuillet, Dusti Gallagher. The Wheat Genome, Springer International Publishing, pp.51-73, 2024, Compendium of Plant Genomes, ⟨10.1007/978-3-031-38294-9_4⟩ |
The Wheat Black Jack : advances towards sequencing the 21 chromosomes of the bread wheat genomeGenomics of Plant Genetic Resources, Editions Springer, 704 p., 2014, 978-94-007-7571-8. ⟨10.1007/978-94-007-7572-5_17⟩ |
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DéBAT : Analyse de Diversité d'un panel de pré-breeding de Blé tendre par une approche Transcriptomique-projet FSOV 2018 MINRAE. 2024 |
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Evolution du génome des Streptomyces : transfert horizontal et variabilité des extrémités chromosomiquesGénomique, Transcriptomique et Protéomique [q-bio.GN]. Université Henri Poincaré - Nancy 1, 2006. Français. ⟨NNT : 2006NAN10122⟩ |