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Frédéric Choulet

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Présentation

Frédéric Choulet est Ingénieur de Recherche du département Biologie et Amélioration des Plantes d’INRAE. Après une thèse à l’Université de Nancy en génomique bactérienne, il a rejoint l’unité GDEC (Génétique, Diversité, Ecophysiologie des Céréales) UMR INRAE-Université Clermont Auvergne en 2007 en postdoc puis en tant qu’IR en 2009. Sa spécialité est la bioinformatique des génomes. Il a été impliqué dans le séquençage du génome du blé tendre, une espèce hexaploïde au génome complexe, dans le cadre d’une initiative internationale qui a mobilisé la communauté scientifique fédérée au sein du consortium IWGSC. Au-delà des aspects méthodologiques, des développements bioinformatiques, Frédéric mène des recherches qui visent à caractériser la composition du génome et surtout sa variabilité aux échelles inter- et intra-spécifiques. Il s’intéresse notamment aux éléments transposables, à leur dynamique évolutive, leur contribution à la variabilité génomique et à l’adaptation chez cette espèce.

Compétences

Bioinformatics Genomics Evolution Plant Science

Publications

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TaRECQ4 contributes to maintain both homologous and homoeologous recombination during wheat meiosis

Jeanne Bazile , Isabelle Nadaud , Pauline Lasserre-Zuber , Jonathan Kitt , Romain de Oliveira
Frontiers in Plant Science, 2024, 14, ⟨10.3389/fpls.2023.1342976⟩
Article dans une revue hal-04488399v1
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All families of transposable elements were active in the recent wheat genome evolution and polyploidy had no impact on their activity

Nathan Papon , Pauline Lasserre-Zuber , Hélène Rimbert , Romain de Oliveira , Etienne Paux
Plant Genome, 2023, ⟨10.1002/tpg2.20347⟩
Article dans une revue hal-04143737v1
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Location and Identification on Chromosome 3B of Bread Wheat of Genes Affecting Chiasma Number

Benoit Darrier , Isabelle Colas , Hélène Rimbert , Frédéric Choulet , Jeanne Bazile
Article dans une revue hal-03766369v1
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Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Jean-Marc Aury , Stefan Engelen , Benjamin Istace , Cécile Monat , Pauline Lasserre-Zuber
GigaScience, 2022, 11, pp.1-18. ⟨10.1093/gigascience/giac034⟩
Article dans une revue hal-03658639v1
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Capturing Wheat Phenotypes at the Genome Level

Babar Hussain , Bala A Akpınar , Michael Alaux , Ahmed M Algharib , Deepmala Sehgal
Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.851079⟩
Article dans une revue hal-03740520v1
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Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly

Tingting Zhu , Le Wang , Hélène Rimbert , Juan Rodriguez , Karin Deal
Plant Journal, 2021, ⟨10.1111/tpj.15289⟩
Article dans une revue hal-03285883v1
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New insights into homoeologous copy number variations in the hexaploid wheat genome

Caroline Juery , Lorenzo Concia , Romain de Oliveira , Nathan Papon , Ricardo Ramírez‐gonzález
Plant Genome, 2021, 14 (1), pp.e20069. ⟨10.1002/tpg2.20069⟩
Article dans une revue hal-03084292v1

Deciphering carbohydrate metabolism during wheat grain development via integrated transcriptome and proteome dynamics

Ayesha Tahir , Jun Kang , Frédéric Choulet , Catherine Ravel , Isabelle Romeuf
Molecular Biology Reports, 2020, 47 (7), pp.5439-5449. ⟨10.1007/s11033-020-05634-w⟩
Article dans une revue hal-02904006v1
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Structural variations affecting genes and transposable elements of chromosome 3B in wheats

Romain de Oliveira , Hélène Rimbert , François Balfourier , Jonathan Kitt , Emeric Dynomant
Frontiers in Genetics, 2020, 11, 891/15 p. ⟨10.3389/fgene.2020.00891⟩
Article dans une revue hal-02917729v1
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Worldwide phylogeography and history of wheat genetic diversity

François Balfourier , Sophie Bouchet , Sandra Robert , Romain de Oliveira , Hélène Rimbert
Science Advances , 2019, 5 (5), pp.eaav0536. ⟨10.1126/sciadv.aav0536⟩
Article dans une revue hal-02172516v1
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Impact of transposable elements on genome structure and evolution in bread wheat

Thomas Wicker , Heidrun Gundlach , Manuel Spannagl , Cristobal Uauy , Philippa Borrill
Genome Biology, 2018, 19 (1), ⟨10.1186/s13059-018-1479-0⟩
Article dans une revue hal-02624812v1
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Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome

Tina Ilc , Gautier Arista , Raquel Tavares , Nicolas Navrot , Eric Duchêne
PLoS ONE, 2018, 13 (6), pp.e0199902. ⟨10.1371/journal.pone.0199902⟩
Article dans une revue inserm-02270765v1
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High throughput SNP discovery and genotyping in hexaploid wheat

Hélène Rimbert , Benoît Darrier , Julien Navarro , Jonathan Kitt , Frédéric Choulet
PLoS ONE, 2018, 13 (1), pp.1-19. ⟨10.1371/journal.pone.0186329⟩
Article dans une revue hal-02628543v1

Shifting the limits in wheat research and breeding using a fully annotated reference genome

. International Wheat Genome Sequencing Consortium (iwgsc) , Arnaud Bellec , Helene Berges , Sonia Vautrin , Michael Alaux
Science, 2018, 361 (6403), pp.7191. ⟨10.1126/science.aar7191⟩
Article dans une revue hal-01885399v1
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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Françoise Alfama
Genome Biology, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩
Article dans une revue hal-02278879v1
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Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome

Gabriel Keeble-Gagnère , Philippe Rigault , Josquin Tibbits , Raj Pasam , Matthew Hayden
Genome Biology, 2018, 19, 18 p. ⟨10.1186/s13059-018-1475-4⟩
Article dans une revue hal-01869898v1
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Identification, molecular cloning, and functional characterization of a wheat udp-glucosyltransferase involved in resistance to fusarium head blight and to mycotoxin accumulation

Miriam Gatti , Frédéric Choulet , Catherine Macadre , Florence Guerard , Jean Marc Seng
Frontiers in Plant Science, 2018, 9, pp.1853. ⟨10.3389/fpls.2018.01853⟩
Article dans une revue hal-02159611v1

The transcriptional landscape of polyploid wheat

R. H. Ramírez-González , P. Borrill , D. Lang , S. A. Harrington , J. Brinton
Science, 2018, 361 (6403), pp.eaar6089. ⟨10.1126/science.aar6089⟩
Article dans une revue hal-02629204v1
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Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome

T Ilc , Gautier Arista , Raquel Tavares , Nicolas Navrot , Eric Duchêne
PLoS ONE, 2018, 13 (6)
Article dans une revue hal-02269561v1

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

Benoît Darrier , Hélène Rimbert , François Balfourier , Lise Pingault , Ambre-Aurore Josselin
Genetics, 2017, 206 (3), pp.1373-1388. ⟨10.1534/genetics.116.196014⟩
Article dans une revue hal-01608797v1
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De novo annotation of transposable elements : tackling the fat genome issue

Véronique Jamilloux , Josquin Daron , Frédéric Choulet , Hadi Quesneville
Proceedings of the IEEE, 2017, 105 (3), pp.474-481. ⟨10.1109/JPROC.2016.2590833⟩
Article dans une revue hal-02622009v1

De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue

Véronique Jamilloux , Josquin Daron , Frédéric Choulet , Hadi Quesneville
Proceedings of the IEEE, 2017, 105 (5), pp.978-978. ⟨10.1109/JPROC.2017.2680218⟩
Article dans une revue hal-02618951v1
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Major gene for field stem rust resistance co-locates with resistance gene Sr12 in 'thatcher' wheat

Colin W. Hiebert , James A. Kolmer , Curt A. Mccartney , Jordan Briggs , Tom Fetch
PLoS ONE, 2016, 11 (6), pp.1-16. ⟨10.1371/journal.pone.0157029⟩
Article dans une revue hal-01608811v1

Exploiting the repetitive fraction of the wheat genome for high-throughput single-nucleotide polymorphism discovery and Genotyping

Nelly Cubizolles , Elodie Rey , Frédéric Choulet , Hélène Rimbert , Christel C. Laugier
PLANT GENOME, 2016, 9 (1), ⟨10.3835/plantgenome2015.09.0078⟩
Article dans une revue hal-02635405v1
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Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

Natasha Marie Glover , Josquin Daron , Lise Pingault , Klaas Vandepoele , Etienne Paux
Genome Biology, 2015, 16 (188), ⟨10.1186/s13059-015-0754-6⟩
Article dans une revue hal-01244498v1
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Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome

Lise Pingault , Frédéric Choulet , Adriana A. Alberti , Natasha Marie Glover , Patrick Wincker
Genome Biology, 2015, 16 (1), n.p. ⟨10.1186/s13059-015-0601-9⟩
Article dans une revue hal-02635440v1
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Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat

Zhi Zheng , Jian Ma , Jiri Stiller , Qiang Zhao , Qi Feng
BMC Genomics, 2015, 16 (850), 7 p. ⟨10.1186/s12864-015-2105-0⟩
Article dans une revue hal-02637545v1
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Meiotic Gene Evolution: Can You Teach a New Dog New Tricks?

Andrew Lloyd , Marion Ranoux , Sonia S. Vautrin , Natasha Marie Glover , Joëlle Fourment
Molecular Biology and Evolution, 2014, 31 (7), pp.1724-1727. ⟨10.1093/molbev/msu119⟩
Article dans une revue hal-02635778v1

High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval

Margarita Shatalina , Monika Messmer , Catherine C. Feuillet , Fabio Mascher , Etienne Paux
TAG Theoretical and Applied Genetics, 2014, 127 (3), pp.573-586. ⟨10.1007/s00122-013-2240-4⟩
Article dans une revue hal-02633712v1

Genome interplay in the grain transcriptome of hexaploid bread wheat

Matthias Pfeifer , Karl G. Kugler , Simen R. Sandve , Bujie Zhan , Heidi Rudi
Science, 2014, 345 (6194), pp.287-287. ⟨10.1126/science.1250091⟩
Article dans une revue hal-02889033v1

Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population

Jacques David , Yan Holtz , Vincent Ranwez , Sylvain Santoni , Gautier Sarah
Molecular Breeding, 2014, 34 (4), pp.1531-1548. ⟨10.1007/s11032-014-0179-z⟩
Article dans une revue hal-01123443v1

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

. International Wheat Genome Sequencing Consortium (iwgsc) , Michael M. Alaux , Françoise F. Alfama-Depauw , Frédéric Choulet , Loïc Couderc
Science, 2014, 345 (6194), pp.1251788. ⟨10.1126/science.1251788⟩
Article dans une revue hal-02640843v1
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Organization and evolution of transposable elements along the bread wheat chromosome 3B

Josquin Daron , Natasha Glover , Lise Pingault , Sébastien Theil , Véronique Jamilloux
Genome Biology, 2014, 15 (12), pp.1-15. ⟨10.1186/s13059-014-0546-4⟩
Article dans une revue hal-02630315v1
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QTug.sau-3B Is a Major Quantitative Trait Locus for Wheat Hexaploidization

Ming Hao , Jiangtao Luo , Deying Zeng , Li Zhang , Shunzong Ning
G3, 2014, 4 (10), pp.1943-1953. ⟨10.1534/g3.114.013078⟩
Article dans une revue hal-02633053v1
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Transcriptome and Allele Specificity Associated with a 3BL Locus for Fusarium Crown Rot Resistance in Bread Wheat

Jian Ma , Jiri Stiller , Qiang Zhao , Qi Feng , Colin Cavanagh
PLoS ONE, 2014, 9 (11), ⟨10.1371/journal.pone.0113309⟩
Article dans une revue hal-02637351v1
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Structural and Functional Partitioning of Bread Wheat Chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe
Science, 2014, 345 (6194), ⟨10.1126/science.1249721⟩
Article dans une revue hal-02638189v1
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A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

Romain Philippe , Etienne Paux , Isabelle Bertin , Pierre Sourdille , Frédéric Choulet
Genome Biology, 2013, 14 (6), ⟨10.1186/gb-2013-14-6-r64⟩
Article dans une revue hal-01189907v1
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dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts

Jonathan J. Vincent , Zhanwu Z. Dai , Catherine Ravel , Frédéric Choulet , Saïd S. Mouzeyar
Database - The journal of Biological Databases and Curation, 2013, 2013, 12 p. ⟨10.1093/database/bat014⟩
Article dans une revue hal-00964169v1

Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure

Baochun B. Li , Frédéric Choulet , Yanfang Y. Heng , Weiwei W. Hao , Etienne Paux
Plant Journal, 2013, 73 (6), pp.952-965. ⟨10.1111/tpj.12086⟩
Article dans une revue hal-00964447v1
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TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes.

Philippe Leroy , Nicolas Guilhot , Hiroaki Sakai , Aurélien Bernard , Frédéric Choulet
Frontiers in Plant Science, 2012, 3, pp.5. ⟨10.3389/fpls.2012.00005⟩
Article dans une revue hal-00753407v1
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Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat

Jan Bartos , Cestmir Vlcek , Frédéric Choulet , Maria Dzunkova , Katerina Cvikova
BMC Plant Biology, 2012, 12, ⟨10.1186/1471-2229-12-155⟩
Article dans une revue hal-01190732v1
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Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome

Romain Philippe , Frédéric Choulet , Etienne Paux , Jan van Oeveren , Jifeng Tang
BMC Genomics, 2012, 13, ⟨10.1186/1471-2164-13-47⟩
Article dans une revue hal-01190822v1

Genome-level identification of cell wall invertase genes in wheat for the study of drought tolerance

Hollie H. Webster , Gabriel G. Keeble , Bernard B. Dell , John J. Fosu-Nyarko , Y. Y. Mukai
Functional Plant Biology, 2012, 39 (7), pp.569 - 579. ⟨10.1071/FP12083⟩
Article dans une revue hal-00964353v1

Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives

Thomas T. Wicker , Klaus F. X. K. F. X. Mayer , Heidrun H. Gundlach , Mihaela M. Martis , Burkhard B. Steuernagel
The Plant cell, 2011, 23 (5), pp.1706 - 1718. ⟨10.1105/tpc.111.086629⟩
Article dans une revue hal-00964455v1

Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot

Cyrille C. Saintenac , Sébastien S. Faure , Arnaud A. Remay , Frédéric Choulet , Catherine Ravel
Chromosoma, 2011, 120 (2), pp.185 - 198. ⟨10.1007/s00412-010-0302-9⟩
Article dans une revue hal-00964315v1
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A 3,000-Loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat

Camille C. Rustenholz , Frédéric Choulet , Christel C. Laugier , Jan J. Safar , Hana H. Simkova
Plant Physiology, 2011, 157 (4), pp.1596 - 1608. ⟨10.1104/pp.111.183921⟩
Article dans une revue hal-00964456v1
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Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources

Camille Rustenholz , Pete E. Hedley , Jenny Morris , Frédéric Choulet , Catherine Feuillet
BMC Genomics, 2010, 11, ⟨10.1186/1471-2164-11-714⟩
Article dans une revue hal-01189739v1
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Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

Frédéric Choulet , Thomas T. Wicker , Camille C. Rustenholz , Etienne Paux , Jerome Salse
The Plant cell, 2010, 22 (6), pp.1686-1701. ⟨10.1105/tpc.110.074187⟩
Article dans une revue hal-00964451v1

Genetic diversity and linkage disequilibrium studies on a 3.1-Mb genomic region of chromosome 3B in European and Asian bread wheat (Triticum aestivum L.) populations

C.Y. C.Y. Hao , Marie-Reine M.-R. Perretant , Frédéric Choulet , L.F. L.F. Wang , Etienne Paux
TAG Theoretical and Applied Genetics, 2010, 121 (7), pp.1209-1225. ⟨10.1007/s00122-010-1382-x⟩
Article dans une revue hal-00964128v1

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat

Etienne Paux , Sébastien S. Faure , Frédéric Choulet , Delphine D. Roger , Valérie V. Gauthier
Plant Biotechnology Journal, 2010, 8 (2), pp.196-210. ⟨10.1111/j.1467-7652.2009.00477.x⟩
Article dans une revue hal-00964403v1
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Conjugative Transfer of the Integrative Conjugative Elements ICESt1 and ICESt3 from Streptococcus thermophilus

Xavier Bellanger , Adam P Roberts , Catherine Morel , Frédéric Choulet , Guillaume Pavlovic
Journal of Bacteriology, 2009, 191 (8), pp.2764 - 2775. ⟨10.1128/JB.01412-08⟩
Article dans une revue hal-01659303v1

A Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B

Etienne Paux , Pierre Sourdille , Jerome J. Salse , Cyrille C. Saintenac , Frédéric Choulet
Science, 2008, 322 (5898), pp.101-104. ⟨10.1126/science.1161847⟩
Article dans une revue hal-00964135v1

Evolution of the terminal regions of the streptomyces linear chromosome

Frédéric Choulet , Bertrand Aigle , Alexandre Gallois , Sophie Mangenot , Claude Gerbaud
Molecular Biology and Evolution, 2006, 23 (12), pp.2361-2369. ⟨10.1093/molbev/msl108⟩
Article dans une revue hal-02661267v1
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Intraspecific Variability of the Terminal Inverted Repeats of the Linear Chromosome of Streptomyces ambofaciens

Frédéric Choulet , Alexandre Gallois , B. Aigle , Sophie Mangenot , Claude Gerbaud
Journal of Bacteriology, 2006, 188 (18), pp.6599 - 6610. ⟨10.1128/JB.00734-06⟩
Article dans une revue hal-01659064v1
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Characterization and evolution of a family of integrative and potentially conjugative or mobilizable elements from Streptococcus thermophilus

Guillaume Pavlovic , Vincent Burrus , Alexandre Toulmay , Frédéric Choulet , Bernard Decaris
Le Lait, 2004, 84 (1-2), pp.7-14. ⟨10.1051/lait:2003042⟩
Article dans une revue hal-00895527v1
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Genome Bioinformatics at GDEC

Frédéric Choulet
AuBi-NGS Annual Meeting, AuBi - Auvergne Bioinformatique, Dec 2022, Clermont-Ferrand, France
Communication dans un congrès hal-04090099v1
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Sequencing, annotation, and pangenomics in wheat

Frédéric Choulet
Webinaire de l'AFBV, Association Française des Biotechnologies Végétales, May 2022, Clermont-Ferrand, France
Communication dans un congrès hal-04090082v1
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Sequencing the genome of the French wheat variety Renan

Frédéric Choulet
IWGSC Webinar, IWGSC - International Wheat Genome Sequencing Consortium, Sep 2022, Clermont-Ferrand, France
Communication dans un congrès hal-04090088v1

Dynamics of transposable elements in the 16 Gb hexaploid wheat genome

Frédéric Choulet
Congrès National des Eléments Transposables (CNET) 2018, Jul 2018, Clermont-Ferrand, France
Communication dans un congrès hal-02293544v1

Dynamics of transposable elements in the 16 Gb hexaploid wheat genome

Frédéric Choulet
Journée annotation structurale et fonctionnelle des génomes eukaryotes, Nov 2018, Paris, France
Communication dans un congrès hal-02786910v1
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Cyril Pommier
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides
Communication dans un congrès hal-02788401v1

The reference sequence for the bread wheat genome

Frédéric Choulet
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States
Communication dans un congrès hal-02786732v1

Challenges of gene and repeat annotation of the wheat genome sequence

Frédéric Choulet
Plant and Animal Genome XXV Conference; IWGSC Standards and Protocoles Workshop, 2017, San Diego, CA, United States
Communication dans un congrès hal-02340462v1

Identifying sequence features impacting recombination in wheat: lessons from chromosome 3B

Pierre Sourdille , Benoît Darrier , Frédéric Choulet , François Balfourier , Hélène Rimbert
13. Int. Wheat Genet. Symp, Apr 2017, Tulln, France
Communication dans un congrès hal-02340493v1

The IWGSC Reference genome browser, data mining and beyond

Michael Alaux , Thomas Letellier , Françoise Alfama Depauw , Jane Rogers , Frédéric Choulet
PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States
Communication dans un congrès hal-02788141v1

Unlocking the cross-incompatibility between wheat and rye?

Véronique Lesage , Walid Alfares , Tanja Gerjets , Sonia Vautrin , Helene Berges
24. International Congress on Sexual Plant Reproduction, International Association of Sexual Plant Reproduction Research (IASPRR). RUS., Mar 2016, Tucson, United States
Communication dans un congrès hal-02795864v1

Assessing structural variations of the hexaploid wheat genome

Frédéric Choulet
Plant and Animal Genome XXIV Conference; Trticeae Genetics and Genomics Workshop, Jan 2016, San Diego, CA, United States
Communication dans un congrès hal-02299630v1

Positional cloning of a QTL, qDHY.3BL, on chromosome 3BL for drought and heat tolerance in bread wheat

Pauline M.L. Thomelin , Julien Bonneau , Julian D. Taylor , Frédéric Choulet , Pierre Sourdille
Plant and Animal Genomie Conference XXIV, Jan 2016, San Diego, United States
Communication dans un congrès hal-02340444v1

IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat

Michael Alaux , Thomas Letellier , Françoise Alfama-Depauw , Véronique Jamilloux , Jane Rogers
PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States
Communication dans un congrès hal-01266518v1

Overview of Actual and Ancestral Recombination in Relationship with the Sequence in Wheat: Focus on 3B Chromosome

Benoît Darrier , Alain Loussert , Hélène Rimbert , Julien Navarro , Frédéric Choulet
Plant and Animals Genomics Conference XXIV / Recombination Mechanism Workshop, Jan 2016, San Diego, United States
Communication dans un congrès hal-02340468v1

Exploitation of the 5BS physical map to complete the SKr crossability locus

Véronique Lesage , Frédéric Choulet , Sonia Vautrin , Elena A. Salina , Marie-Claire Debote
24. Plant and Animal Genome Conference (PAG XXIV), Scherago International Inc. USA., Jan 2016, San Diego, United States. 1 p
Communication dans un congrès hal-02796150v1

Structure and dynamics of the hexaploid wheat genome

Frédéric Choulet
TGAC Seminar, Genome Analysis Centre (TGAC). GBR., Jan 2016, Norwich, United Kingdom
Communication dans un congrès hal-02340474v1

Sequencing and Analysis of Wheat Chromosome 1B

Frédéric Choulet , Hélène Rimbert , Ambre-Aurore Josselin , Benoît Darrier , Pierre Sourdille
Plant and Animal Genome XXIV Conference; IWGSC Standards and Protocoles Workshop, Jan 2016, San Diego, CA, United States
Communication dans un congrès hal-02306172v1

Bread wheat whole genome sequence assembly

Frédéric Choulet
Colloque EPGV 2016, Détection Gestion et Analyse du Polymorphisme des Génomes Végétaux, Oct 2016, Angers, France
Communication dans un congrès hal-02306175v1

Wheat genome sequencing: initiatives, resources, knowledge

Frédéric Choulet
Séminaire du Groupe Céréales, Institut National de Recherche Agronomique (INRA). UMR Génétique Diversité et Ecophysiologie des Céréales (1095)., Apr 2015, Clermont-Ferrand, France
Communication dans un congrès hal-02795895v1

A reference sequence of bread wheat chromosome 3B

Frédéric Choulet
JOBIM Journées Ouvertes en Biologie, Informatique et Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France
Communication dans un congrès hal-02299635v1

Structure and evolution of the wheat genome

Frédéric Choulet
Seminar GReD, Feb 2015, Clermont-Ferrand, France
Communication dans un congrès hal-02299625v1
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IWGSC sequence repository : how to facilitate pseudomolecule assembly?

Michael M. Alaux , Frédéric Choulet , Loïc Couderc , Françoise F. Alfama-Depauw , Véronique Jamilloux
PAG XXIII - Plant and Animal Genome Conference, Jan 2015, San Diego, United States
Communication dans un congrès hal-02741662v1

Characterization of recombination hot spots in bread wheat: Example of chromosome 3B

Benoît Darrier , Alain Loussert , Hélène Rimbert , Marie-Claire Debote , Frédéric Choulet
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), May 2015, Toulouse, France
Communication dans un congrès hal-01318721v1

Structural variations of the hexaploid wheat chromosome 3B

Emeric Dynomant , Hélène Rimbert , Jan Vrána , Marie Kubaláková , Jaroslav Dolezel
9. International Wheat Conference, ICMS Australasia. AUS., Sep 2015, Sydney, Australia. 195 p
Communication dans un congrès hal-02740939v1

Structural variations along the bread wheat genome

Frédéric Choulet
3. Plant Genomics Congress, May 2015, London, United Kingdom
Communication dans un congrès hal-02740167v1

A reference sequence of wheat chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe
3. Plant Genomics Congress, May 2015, London, United Kingdom
Communication dans un congrès hal-02740971v1

Impact des caractéristiques de la séquence sur la localisation des points chauds de recombinaison et la répartition du déséquilibre de liaison le long du chromosome 3B du blé tendre

Benoît Darrier , Alain Loussert , Marie-Claire Debote , François Balfourier , Frédéric Choulet
Séminaire Selgen, Dec 2014, Paris, France
Communication dans un congrès hal-02340473v1
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Assembling a pseudomolecule for a wheat chromosome: the 3B experience

Frédéric Choulet , Adriana A. Alberti , Valérie Barbe , Sébastien Theil , Pierre Sourdille
22. Conference on Plant and Animal Genome, Jan 2014, San Diego, Californie, United States
Communication dans un congrès hal-02743902v1

The IWGSC: Strategies and activities to sequence the bread wheat genome

Frédéric Choulet
Plant Genomes' Day, Institut National de Recherche Agronomique (INRA). US Centre National de Ressources Génomiques Végétales (1258)., Jun 2014, Toulouse, France
Communication dans un congrès hal-02795856v1
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A reference sequence of wheat chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe
22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States
Communication dans un congrès hal-02742303v1
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Séquençage, assemblage et analyse du chromosome 3B du blé tendre

Frédéric Choulet
Séminaire INRIA Symbiose, Institut National de Recherche en Informatique et en Automatique (INRIA). FRA., Feb 2013, Rennes, France
Communication dans un congrès hal-02744514v1
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Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3B

Frédéric Choulet , Sébastien Theil , Josquin Daron , Natasha Marie Glover , Nicolas N. Guilhot
IWGSC Wheat Genome Sequencing Strategy and Funding Workshop, International Wheat Genome Sequencing Consortium (IWGSC). USA., Apr 2013, Evry, France
Communication dans un congrès hal-02747374v1
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Josquin Daron , Natasha Marie Glover , Nicolas N. Guilhot
TGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom
Communication dans un congrès hal-02809032v1
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Towards a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Adriana A. Alberti , Valérie Barbe , Sophie Mangenot
16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, Floride, United States
Communication dans un congrès hal-02807639v1
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Report on sequencing the wheat chromosome 3B

Frédéric Choulet , Patrick Wincker , Hadi Quesneville , Dominique D. Brunel , Bikram S. Gill
19. Plant and Animal Genome Conference, Jan 2011, San Diego, Californie, United States. 1 p
Communication dans un congrès hal-02808854v1
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Sequencing and Analyses of the Hexaploid Wheat Chromosome 3B

Frédéric Choulet , P. Wincker , Hadi Quesneville , Dominique D. Brunel , B. Gill
19. Conference on Plant and Animal Genome, Jan 2011, San Diego, CA, United States
Communication dans un congrès hal-02747876v1

Sequencing and molecular analysis of a 12 cM locus carrying multiple durable disease resistance genes on chromosome 3BS in hexaploid wheat

Frédéric Choulet , Catherine C. Feuillet
Séminaire Génoplante 2010, Mar 2010, Mallemort de Provence, France
Communication dans un congrès hal-02812696v1
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Sequencing and analyses of the hexaploid wheat chromosome 3B

Frédéric Choulet , Etienne Paux , Philippe Leroy , Arnaud Couloux , Michaël Alaux
10. conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom
Communication dans un congrès hal-02753841v1
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Towards sequencing the 1 Gb wheat chromosome 3B

Frédéric Choulet , Etienne Paux , Philippe Leroy , Pierre Sourdille , Stéphane Schlub
1. Workshop of StatSeq COST Action TD0801, Oct 2009, Barcelona, Spain
Communication dans un congrès hal-02818225v1
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Sequencing, annotation and characterization of 17 Mb of chromosome 3B contigs provide novel insights into the wheat genome organization and evolution

Frédéric Choulet , Etienne Paux , Jerome J. Salse , Philippe Leroy , Ghislaine Magdelenat
19. International Triticeae Mapping Initiative - 3rd COST Tritigen, 2009, Clermont-Ferrand, France
Communication dans un congrès hal-02818223v1
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Sequencing and analysis of megabase-sized genomic regions from wheat

Frédéric Choulet , Thomas Wicker , Etienne Paux , Cyrille C. Saintenac , Pierre Sourdille
16. Plant and Animal Genome Conference, Jan 2008, San Diego, Californie, United States
Communication dans un congrès hal-02820795v1
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The wheat genome: swimming in an ocean of transposable elements

Frédéric Choulet , Thomas Wicker , Etienne Paux , Cyrille C. Saintenac , Pierre Sourdille
ICTE 2008: International Congress on Transposable Elements, Apr 2008, Saint Malo, France
Communication dans un congrès hal-02820796v1
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Sequence analyses of Megabase-sized contigs of the wheat genome

Frédéric Choulet , Philippe Leroy , Franck Giacomoni , Jerome J. Salse , Etienne Paux
2. Workshop on TritiGEN. COST Action FA604, Apr 2008, Albena, Bulgaria
Communication dans un congrès hal-02818229v1

Deciphering strucutral variation in wheat genome using resequencing data

Romain de Oliveira , Emeric Dynomant , Hélène Rimbert , Jaroslav Dolezel , Federica Cattonaro
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. , 2018
Poster de conférence hal-02787820v1

Linking genomic and epigenomic features in the hexaploid wheat genome

Caroline Juéry , Etienne Paux , Frédéric Choulet
2. International Wheat Innovation Workshop, Mar 2018, Clermont-Ferrand, France. , 2018
Poster de conférence hal-02293572v1

Impact of meiotic recombination on gene admixture for wheat improvement

Benoît Darrier , Frédéric Choulet , Natasha Marie Glover , Adriana A. Alberti , Sébastien Theil
9. International Wheat Conference, Sep 2015, Sydney, Australia. 195 p., 2015, 9th International Wheat Conference 20-25 September 2015, Sydney, Australia : Program and Abstracts
Poster de conférence hal-02741010v1

SKr, a major QTL involved in crossability of wheat with rye

Véronique S. Lesage , Walid Alfares , Tanja Gerjets , Sonia S. Vautrin , Helene H. Berges
23. congress on Sexual Plant Reproduction, Jul 2014, Porto, Portugal. 2014
Poster de conférence hal-02800353v1

The TriAnnot pipeline and its application to the wheat chromosome 3B annotation

Aurélien Bernard , Nicolas N. Guilhot , Frédéric Choulet , Lise Pingault , Josquin Daron
European Conference on Computational Biology, Sep 2014, Strasbourg, France. , 2014, European Conference on Computational Biology
Poster de conférence hal-02738964v1

SMART: Sequencing and molecular analysis of a 12 cM locus carrying multiple durable disease resistance genes on chromosome 3BS in hexaploid wheat

Frédéric Choulet , Etienne Paux , Bikram Gill , Rudi Appels , Beat Keller
Séminaire GENOPLANTE 2008, 2008, Arles, France. , 2008
Poster de conférence hal-02820797v1

Evidence for a High Heterogeneity Between the Terminal Regions of the Chromosomes of Two Phylogenetically Close Species, Streptomyces ambofaciens and Streptomyces coelicolor by Genome Comparison

Frédéric Choulet , Bertrand Aigle , F. X. Francou , Alexandre Gallois , Céline Fourrier
Streptomyces dissemination meeting, Jul 2003, Guilford, United Kingdom. 2003, Streptomyces dissemination meeting
Poster de conférence hal-01182814v1
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Structural and Functional Annotation of the Wheat Genome

Frédéric Choulet , Xi Wang , Manuel Spannagl , David Swarbreck , Hélène Rimbert
Rudi Appels, Kellye Eversole, Catherine Feuillet, Dusti Gallagher. The Wheat Genome, Springer International Publishing, pp.51-73, 2024, Compendium of Plant Genomes, ⟨10.1007/978-3-031-38294-9_4⟩
Chapitre d'ouvrage hal-04297331v1

The Wheat Black Jack : advances towards sequencing the 21 chromosomes of the bread wheat genome

Frédéric Choulet , Mario Caccamo , Jon Wright , Michael M. Alaux , Philippe Leroy
Genomics of Plant Genetic Resources, Editions Springer, 704 p., 2014, 978-94-007-7571-8. ⟨10.1007/978-94-007-7572-5_17⟩
Chapitre d'ouvrage hal-02797297v1
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Evolution du génome des Streptomyces : transfert horizontal et variabilité des extrémités chromosomiques

Frédéric Choulet
Génomique, Transcriptomique et Protéomique [q-bio.GN]. Université Henri Poincaré - Nancy 1, 2006. Français. ⟨NNT : 2006NAN10122⟩
Thèse tel-01754311v1