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Gilles Vergnaud

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Brucella abortus in Kazakhstan, population structure and comparison with worldwide genetic diversity

Alexandr Shevtsov , Axel Cloeckaert , Kalysh Berdimuratova , Elena Shevtsova , Alexandr V. Shustov
Frontiers in Microbiology, 2023, 14, pp.1106994. ⟨10.3389/fmicb.2023.1106994⟩
Journal articles hal-04076299v1
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The First Finding of Francisella tularensis subsp. mediasiatica in Krasnoyarsk Territory, Siberia, and an Update of the Subspecies Genetic Diversity

Vitalii Timofeev , Irina Bakhteeva , Alexander Mokrievich , Galina Vakhrameeva , Elena Gritskova
Bacteria, 2022, 1 (4), pp.242-249. ⟨10.3390/bacteria1040018⟩
Journal articles hal-03835933v1
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Whole-Genome Sequence of a Brucella pinnipedialis Sequence Type 54 Strain Isolated from a Hooded Seal ( Cystophora cristata ) from the North Atlantic Ocean, Norway

Michel S Zygmunt , Gilles Vergnaud , Axel Cloeckaert
Microbiology Resource Announcements, 2021, 10 (18), 2 p. ⟨10.1128/MRA.00271-21⟩
Journal articles hal-03222575v1

Genetic diversity of Francisella tularensis subsp. holarctica in Kazakhstan

Vladislav Shevtsov , Alma Kairzhanova , Alexandr Shevtsov , Alexandr Shustov , Ruslan Kalendar
PLoS Neglected Tropical Diseases, 2021, 15 (5), pp.e0009419. ⟨10.1371/journal.pntd.0009419⟩
Journal articles hal-03690908v1

CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences

Akinyemi Fasemore , Andrea Helbich , Mathias Walter , Thomas Dandekar , Gilles Vergnaud
mSystems, 2021, 6 (6), ⟨10.1128/mSystems.00403-21⟩
Journal articles hal-03690892v1

Characterization of sixteen Achromobacter xylosoxidans phages from Abidjan, Côte d'Ivoire, isolated on a single clinical strain

Christiane Essoh , Jean-Philippe Vernadet , Gilles Vergnaud , Adama Coulibaly , Adèle Kakou-N'Douba
Archives of Virology, 2020, ⟨10.1007/s00705-019-04511-7⟩
Journal articles hal-02431237v1
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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers

Christine Pourcel , Marie Touchon , Nicolas Villeriot , Jean-Philippe Vernadet , David Couvin
Nucleic Acids Research, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Journal articles hal-02990278v1
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Omp2b Porin Alteration in the Course of Evolution of Brucella spp

Axel Cloeckaert , Gilles Vergnaud , Michel S. Zygmunt
Frontiers in Microbiology, 2020, 11, pp.284. ⟨10.3389/fmicb.2020.00284⟩
Journal articles hal-02509019v1
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Bacillus anthracis Evolution: Taking Advantage of the Topology of the Phylogenetic Tree and Human History to Propose Dating Points

Gilles Vergnaud
Erciyes Medical Journal, In press, ⟨10.14744/etd.2020.64920⟩
Journal articles hal-02554637v1
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Investigation of $Pseudomonas\ aeruginosa$ strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption

Libera Latino , Cédric Midoux , Gilles Vergnaud , Christine Pourcel
PLoS ONE, 2019, 14 (4), pp.e0215456. ⟨10.1371/journal.pone.0215456⟩
Journal articles hal-02173138v1

And Then There Were Three: Discovering the Role of CRISPRs

Gilles Vergnaud
The Crispr Journal, 2019, 2 (6), pp.359--361. ⟨10.1089/crispr.2019.29073.gve⟩
Journal articles hal-02431231v1

Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire

Christiane Essoh , Jean-Philippe Vernadet , Gilles Vergnaud , Adama Coulibaly , Adèle Kakou-N'Douba
Microbiology Resource Announcements, 2019, 8 (1), ⟨10.1128/MRA.01358-18⟩
Journal articles hal-02170278v1

Genetic Diversity of Brucella melitensis in Kazakhstan in Relation to World-Wide Diversity

Elena Shevtsova , Gilles Vergnaud , Alexandr Shevtsov , Alexandr Shustov , Kalysh Berdimuratova
Frontiers in Microbiology, 2019, 10, pp.1897. ⟨10.3389/fmicb.2019.01897⟩
Journal articles hal-02281189v1

Insights from Bacillus anthracis strains isolated from permafrost in the tundra zone of Russia

Vitalii Timofeev , Irina Bahtejeva , Raisa Mironova , Galina Titareva , Igor Lev
PLoS ONE, 2019, 14 (5), pp.e0209140. ⟨10.1371/journal.pone.0209140⟩
Journal articles hal-02164042v1

Molecular characterization of Brucella species from Zimbabwe

Maphuti Betty Ledwaba , Calvin Gomo , Kgaugelo Edward Lekota , Philippe Le Flèche , Ayesha Hassim
PLoS Neglected Tropical Diseases, 2019, 13 (5), pp.e0007311. ⟨10.1371/journal.pntd.0007311⟩
Journal articles hal-02164043v1
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

David Couvin , Aude Bernheim , Claire Toffano-Nioche , Marie Touchon , Juraj Michalik
Nucleic Acids Research, 2018, 46 (W1), pp.W246-W251. ⟨10.1093/nar/gky425⟩
Journal articles pasteur-02098389v1
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Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006

Gilles Vergnaud , Yolande Hauck , David Christiany , Brendan Daoud , Christine Pourcel
Frontiers in Microbiology, 2018, 9, 11 p. ⟨10.3389/fmicb.2018.01545⟩
Journal articles hal-02184813v1

Associations between Mycobacterium tuberculosis Beijing genotype and drug resistance to four first-line drugs: a survey in China

Haican Liu , Yuanyuan Zhang , Zhiguang Liu , Jinghua Liu , Yolande Hauck
Frontiers of Medicine, 2018, 12 (1), pp.92--97. ⟨10.1007/s11684-017-0610-z⟩
Journal articles hal-02180796v1
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Transposition behavior revealed by high-resolution description of $Pseudomonas\ Aeruginosa$ saltovirus integration sites

Gilles Vergnaud , Cédric Midoux , Yann Blouin , Maria Bourkaltseva , Victor Krylov
Viruses, 2018, 10 (5), pp.245. ⟨10.3390/v10050245⟩
Journal articles hal-02184815v1
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Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage

Christine Pourcel , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Libera Latino
PLoS ONE, 2017, 12 (1), pp.e0169684. ⟨10.1371/journal.pone.0169684⟩
Journal articles hal-01879155v1

Correction: Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade

Gilles Vergnaud , Guillaume Girault , Simon Thierry , Christine Pourcel , Nora Madani
PLoS ONE, 2017, 12 (6), pp.e0180603. ⟨10.1371/journal.pone.0180603⟩
Journal articles hal-01879193v1
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Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts

Sascha Al Dahouk , Stephan Köhler , Alessandra Occhialini , María Pilar Jiménez de Bagüés , Jens Andre Hammerl
Scientific Reports, 2017, 7, 17 p. ⟨10.1038/srep44420⟩
Journal articles hal-01605016v1

A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus

Christine Pourcel , Cédric Midoux , Gilles Vergnaud , Libera Latino
Journal of General Virology, 2017, 98 (8), pp.2181 - 2189. ⟨10.1099/jgv.0.000883⟩
Journal articles hal-01879191v1

Russian isolates enlarge the known geographic diversity of Francisella tularensis subsp. mediasiatica

Vitalii Timofeev , Irina Bakhteeva , Galina Titareva , Pavel Kopylov , David Christiany
PLoS ONE, 2017, 12 (9), pp.e0183714. ⟨10.1371/journal.pone.0183714⟩
Journal articles hal-01879194v1

Brucella vulpis sp. nov., a novel Brucella species isolated from mandibular lymph nodes of red foxes (Vulpes vulpes) in Austria

Holger C. Scholz , Sandra Revilla-Fernández , Sascha Al Dahouk , Jens A. Hammerl , Michel S. Zygmunt
International Journal of Systematic and Evolutionary Microbiology, 2016, 66 (5), pp.2090-2098. ⟨10.1099/ijsem.0.000998⟩
Journal articles hal-01346188v1
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Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa

Libera Latino , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Christine Pourcel
Microbiology, 2016, ⟨10.1099/mic.0.000263⟩
Journal articles hal-01280758v1
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Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.

Christine Pourcel , Cédric Midoux , Libera Latino , Marie-Agnès Petit , Gilles Vergnaud
Genome Announcements, 2016, 4 (6), pp.e00916-16. ⟨10.1128/genomeA.00916-16⟩
Journal articles hal-01439325v1
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Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade

Gilles Vergnaud , Guillaume Girault , Simon Thierry , Christine Pourcel , Nora Madani
PLoS ONE, 2016, 11 (2), pp.0146216. ⟨10.1371/journal.pone.0146216⟩
Journal articles hal-01278435v1
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Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire.

Christiane Essoh , Libera Latino , Cédric Midoux , Yann Blouin , Guillaume Loukou
PLoS ONE, 2015, 10 (6), pp.e0130548. ⟨10.1371/journal.pone.0130548⟩
Journal articles hal-01188392v1
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Generation of a CRISPR database for Yersinia pseudotuberculosis complex and role of CRISPR-based immunity in conjugation.

Katja A Koskela , Laura Mattinen , Laura Kalin-Mänttäri , Gilles Vergnaud , Olivier Gorgé
Environmental Microbiology, 2015, pp.12816. ⟨10.1111/1462-2920.12816⟩
Journal articles hal-01152593v1

A novel multiple locus variable number of tandem repeat (VNTR) analysis (MLVA) method for Propionibacterium acnes

Yolande Hauck , Charles Soler , Patrick Gérôme , Rithy Vong , Christine Macnab
Infection, Genetics and Evolution, 2015, 33, pp.233-41. ⟨10.1016/j.meegid.2015.05.009⟩
Journal articles hal-01188389v1
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Development of a Multiple-Locus Variable-Number Tandem-Repeat Typing Scheme for Genetic Fingerprinting of Burkholderia cenocepacia and Application to Nationwide Epidemiological Analysis

Christine Segonds , Michelle Thouverez , Antoine Barthe , Nadège Bossuet-Greif , Lenka Tisseyre
Journal of Clinical Microbiology, 2015, 53 (2), pp.398-409. ⟨10.1128/JCM.02473-14⟩
Journal articles hal-01110749v1

Molecular Epidemiology of Mycoplasma pneumoniae: Genotyping Using Single Nucleotide Polymorphisms and SNaPshot Technology.

A Touati , Y Blouin , P Sirand-Pugnet , H Renaudin , T Oishi
Journal of Clinical Microbiology, 2015, 53 (10), pp.3182-94. ⟨10.1128/JCM.01156-15⟩
Journal articles hal-01214201v1
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Development of a Multiple Loci Variable Number of Tandem Repeats Analysis (MLVA) to Unravel the Intra-Pathovar Structure of Pseudomonas syringae pv. actinidiae Populations Worldwide

Serena Ciarroni , Lorenzo Gallipoli , Maria C Taratufolo , Margi I Butler , Russell T M Poulter
PLoS ONE, 2014, 10 (8), pp.e0135310. ⟨10.1371/journal.pone.0135310⟩
Journal articles hal-01214203v1
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Brucella papii sp. nov. isolated from baboons (Papio spp.)

Adrian M. Whatmore , Nicholas Davison , Axel Cloeckaert , Sascha Al Dahouk , Michel S Zygmunt
International Journal of Systematic and Evolutionary Microbiology, 2014, 64, pp.4120-4128. ⟨10.1099/ijs.0.065482-0⟩
Journal articles hal-01128089v1

Progenitor "Mycobacterium canettii" clone responsible for lymph node tuberculosis epidemic, Djibouti.

Yann Blouin , Géraldine Cazajous , Céline Dehan , Charles Soler , Rithy Vong
Emerging Infectious Diseases, 2014, 20 (1), pp.21-8
Journal articles hal-00948497v1

High-throughput sequencing of Bacillus anthracis in France: investigating genome diversity and population structure using whole-genome SNP discovery.

Guillaume Girault , Yann Blouin , Gilles Vergnaud , Sylviane Derzelle
BMC Genomics, 2014, 15 (1), pp.288. ⟨10.1186/1471-2164-15-288⟩
Journal articles hal-00982779v1

Yersinia pseudotuberculosis ST42 (O:1) Strain Misidentified as Yersinia pestis by Mass Spectrometry Analysis.

Patrick Gérôme , Philippe Le Flèche , Yann Blouin , Holger C Scholz , François M Thibault
Genome Announcements, 2014, 2 (3), [Epub ahead of print]. ⟨10.1128/genomeA.00435-14⟩
Journal articles hal-01009200v1

Genotyping of French Bacillus anthracis Strains Based on 31-Loci Multi Locus VNTR Analysis: Epidemiology, Marker Evaluation, and Update of the Internet Genotype Database.

Simon Thierry , Christophe Tourterel , Philippe Le Flèche , Sylviane Derzelle , Neira Dekhil
PLoS ONE, 2014, 9 (6), pp.e95131. ⟨10.1371/journal.pone.0095131⟩
Journal articles hal-01005454v1
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Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA)

Dominique Bergonier , Daniel Sobral , Andrea T Fessler , Eric Jacquet , Florence Gilbert
Veterinary Research, 2014, 45 (1), pp.97. ⟨10.1186/s13567-014-0097-4⟩
Journal articles hal-01123402v1

Molecular characterisation of Brucella species.

H. C. Scholz , Gilles Vergnaud
Revue Scientifique et Technique- Office International des Epizooties, 2013, 32 (1), pp.149-62
Journal articles hal-00846077v1

The Susceptibility of Pseudomonas aeruginosa Strains from Cystic Fibrosis Patients to Bacteriophages.

Christiane Essoh , Yann Blouin , Guillaume Loukou , Arsher Cablanmian , Serge Lathro
PLoS ONE, 2013, 8 (4), pp.e60575. ⟨10.1371/journal.pone.0060575⟩
Journal articles hal-00822766v1

Draft Genome Sequences of Five Yersinia pseudotuberculosis ST19 Isolates and One Isolate Variant.

Mikhail E Platonov , Yann Blouin , Vera V Evseeva , Maxim V Afanas'Ev , Christine Pourcel
Genome Announcements, 2013, 1 (2), pii e00122-130. ⟨10.1128/genomeA.00122-13⟩
Journal articles hal-00813384v1

Yersinia pestis Lineages in Mongolia.

Julia M Riehm , Gilles Vergnaud , Daniel Kiefer , Tserennorov Damdindorj , Otgonbaatar Dashdavaa
PLoS ONE, 2012, 7 (2), pp.e30624. ⟨10.1371/journal.pone.0030624⟩
Journal articles hal-00676854v1

Rapid Identification of International Multidrug-Resistant Pseudomonas aeruginosa Clones by Multiple-Locus Variable Number of Tandem Repeats Analysis and Investigation of Their Susceptibility to Lytic Bacteriophages.

Jérôme Larché , Flavie Pouillot , Christiane Essoh , Balázs Libisch , Monica Straut
Antimicrobial Agents and Chemotherapy, 2012, 56 (12), pp.6175-80. ⟨10.1128/AAC.01233-12⟩
Journal articles hal-00752317v1

A new highly discriminatory multiplex capillary-based MLVA assay as a tool for the epidemiological survey of Pseudomonas aeruginosa in cystic fibrosis patients.

D. Sobral , P. Mariani-Kurkdjian , E. Bingen , H. Vu-Thien , K. Hormigos
European Journal of Clinical Microbiology and Infectious Diseases, 2012, 31 (9), pp.2247-56. ⟨10.1007/s10096-012-1562-5⟩
Journal articles hal-00734023v1
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Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012.

B A Lindstedt , M Torpdahl , Gilles Vergnaud , S Le Hello , F X Weill
Eurosurveillance, 2012, 18 (4), pp.20385. ⟨10.2807/ese.18.04.20385-en⟩
Journal articles pasteur-01111429v1

Diversity of Acinetobacter baumannii in Four French Military Hospitals, as Assessed by Multiple Locus Variable Number of Tandem Repeats Analysis.

Yolande Hauck , Charles Soler , Patrick Jault , Audrey Mérens , Patrick Gérome
PLoS ONE, 2012, 7 (9), pp.e44597. ⟨10.1371/journal.pone.0044597⟩
Journal articles hal-00734019v1

Draft Genome Sequences of Two Yersinia pseudotuberculosis ST43 (O:1b) Strains, B-7194 and B-7195

Y. Blouin , M. E. Platonov , C. Pourcel , V. V. Evseeva , M. V. Afanas'Ev
Genome Announcements, 2012, 1 (4), pp.e00510-13. ⟨10.1128/genomeA.00510-13⟩
Journal articles hal-01160731v1

MLVA16 Typing of Portuguese Human and Animal Brucella melitensis and Brucella abortus Isolates.

Ana Cristina Ferreira , Lélia Chambel , Tania Tenreiro , Regina Cardoso , Lídia Flor
PLoS ONE, 2012, 7 (8), pp.e42514. ⟨10.1371/journal.pone.0042514⟩
Journal articles hal-00734017v1
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High Throughput Multiple Locus Variable Number of Tandem Repeat Analysis (MLVA) of Staphylococcus aureus from Human, Animal and Food Sources.

Daniel Sobral , Stefan Schwarz , Dominique Bergonier , Anne Brisabois , Andrea T Fessler
PLoS ONE, 2012, 7 (5), pp.e33967. ⟨10.1371/journal.pone.0033967⟩
Journal articles hal-00695986v1

Significance of the Identification in the Horn of Africa of an Exceptionally Deep Branching Mycobacterium tuberculosis Clade.

Yann Blouin , Yolande Hauck , Charles Soler , Michel Fabre , Rithy Vong
PLoS ONE, 2012, 7 (12), pp.e52841. ⟨10.1371/journal.pone.0052841⟩
Journal articles hal-00772379v1
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Intraspecies Biodiversity of the Genetically Homologous Species Brucella microti.

Sascha Al Dahouk , Erwin Hofer , Herbert Tomaso , Gilles Vergnaud , Philippe Le Flèche
Applied and Environmental Microbiology, 2012, 78 (5), pp.1534-43. ⟨10.1128/AEM.06351-11⟩
Journal articles hal-00676848v1

Identification of Variable-Number Tandem-Repeat (VNTR) Sequences in Acinetobacter baumannii and Interlaboratory Validation of an Optimized Multiple-Locus VNTR Analysis Typing Scheme.

Christine Pourcel , Fabrizia Minandri , Yolande Hauck , Silvia d'Arezzo , Francesco Imperi
Journal of Clinical Microbiology, 2011, 49 (2), pp.539-48. ⟨10.1128/JCM.02003-10⟩
Journal articles hal-00574235v1

Multiple-locus variable-number tandem-repeat analysis genotyping of human Brucella isolates from Turkey.

Selçuk Kiliç , Ivan N Ivanov , Riza Durmaz , Mehmet Refik Bayraktar , Ergin Ayaslioglu
Journal of Clinical Microbiology, 2011, 49 (9), pp.3276-83. ⟨10.1128/JCM.02538-10⟩
Journal articles hal-00632994v1

Investigation of the population structure of Legionella pneumophila by analysis of tandem repeat copy number and internal sequence variation.

Paolo Visca , Silvia d'Arezzo , Françoise Ramisse , Yevgeniy Gelfand , Gary Benson
Microbiology, 2011, 157 (Pt 9), pp.2582-94. ⟨10.1099/mic.0.047258-0⟩
Journal articles hal-00633000v1

High-throughput typing method to identify a non-outbreak-involved Legionella pneumophila strain colonizing the entire water supply system in the town of Rennes, France.

D. Sobral , Pierre Le Cann , Anne Gérard , S. Jarraud , B. Lebeau
Applied and Environmental Microbiology, 2011, 77 (19), pp.6899-907. ⟨10.1128/AEM.05556-11⟩
Journal articles hal-00656901v1

Characterization of Genetic Diversity of Bacillus anthracis in France by Using High-Resolution Melting Assays and Multilocus Variable-Number Tandem-Repeat Analysis.

S. Derzelle , S. Laroche , P. Le Flèche , Y. Hauck , S. Thierry
Journal of Clinical Microbiology, 2011, 49 (12), pp.4286-92. ⟨10.1128/JCM.05439-11⟩
Journal articles hal-00656848v1

Clostridium botulinum Group I Strain Genotyping by 15-Locus Multilocus Variable-Number Tandem-Repeat Analysis.

Silvia Fillo , Francesco Giordani , Fabrizio Anniballi , Olivier Gorgé , Vincent Ramisse
Journal of Clinical Microbiology, 2011, 49 (12), pp.4252-63. ⟨10.1128/JCM.05396-11⟩
Journal articles hal-00656853v1

[Performances of the assay MTBDRplus(®) in the surveillance of rifampicin resistance in Mycobacterium tuberculosis.]

M. Fabre , Y. Hauck , C. Pourcel , Gilles Vergnaud , R. Vong
Pathologie Biologie, 2011, 59 (2), pp.94-96. ⟨10.1016/j.patbio.2010.07.006⟩
Journal articles hal-00584019v1

Molecular epidemiology of human and animal tuberculosis in Ibadan, Southwestern Nigeria.

A. O. Jenkins , S. I. B. Cadmus , E. H. Venter , C. Pourcel , Y. Hauk
Vet Microbiol, 2011, 151 (1-2), pp.139-47. ⟨10.1016/j.vetmic.2011.02.037⟩
Journal articles hal-00632992v1

Investigation on Mycobacterium tuberculosis Diversity in China and the Origin of the Beijing Clade.

Kanglin Wan , Jinghua Liu , Yolande Hauck , Yuanyuan Zhang , Jie Liu
PLoS ONE, 2011, 6 (12), pp.e29190. ⟨10.1371/journal.pone.0029190⟩
Journal articles hal-00657918v1

Longitudinal survey of Staphylococcus aureus in cystic fibrosis patients using a multiple-locus variable-number of tandem-repeats analysis method.

Hoang Vu-Thien , Katia Hormigos , Gaëlle Corbineau , Brigitte Fauroux , Harriet Corvol
BMC Microbiology, 2010, 10, pp.24. ⟨10.1186/1471-2180-10-24⟩
Journal articles hal-00506420v1

Molecular characteristics of "Mycobacterium canettii" the smooth Mycobacterium tuberculosis bacilli.

Michel Fabre , Yolande Hauck , Charles Soler , Jean-Louis Koeck , Jakko van Ingen
Infection, Genetics and Evolution, 2010, 10 (8), pp.1165-73. ⟨10.1016/j.meegid.2010.07.016⟩
Journal articles hal-00534312v1

Brucella inopinata sp. nov., isolated from a breast implant infection.

Holger C Scholz , Karsten Nöckler , Cornelia Göllner , Peter Bahn , Gilles Vergnaud
International Journal of Systematic and Evolutionary Microbiology, 2010, 60 (Pt 4), pp.801-8. ⟨10.1099/ijs.0.011148-0⟩
Journal articles hal-01160732v1

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) for the Genotyping of Bacterial Pathogens.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
Methods in Molecular Biology, 2009, 551, pp.105-16. ⟨10.1007/978-1-60327-999-4_9⟩
Journal articles hal-00397745v1

Isolation of Brucella microti from mandibular lymph nodes of red foxes, Vulpes vulpes, in lower Austria.

Holger Christian Scholz , Erwin Hofer , Gilles Vergnaud , Philippe Le Fleche , Adrian M Whatmore
Vector-Borne and Zoonotic Diseases, 2009, 9 (2), pp.153-6. ⟨10.1089/vbz.2008.0036⟩
Journal articles hal-00532594v1

Improved MLVA assay for Staphylococcus aureus providing a highly informative genotyping technique together with strong phylogenetic value.

Christine Pourcel , Katia Hormigos , Lucie Onteniente , Olga Sakwinska , Ruud H Deurenberg
Journal of Clinical Microbiology, 2009, epub ahead of print. ⟨10.1128/JCM.00267-09⟩
Journal articles hal-00414260v1
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MLVA-16 typing of 295 marine mammal Brucella isolates from different animal and geographic origins identifies 7 major groups within Brucella ceti and Brucella pinnipedialis.

Marianne Maquart , Philippe Le Flèche , Geoffrey Foster , Morten Tryland , Françoise Ramisse
BMC Microbiology, 2009, 9, pp.145. ⟨10.1186/1471-2180-9-145⟩
Journal articles hal-00408931v1

Multiple locus variable number of tandem repeats analysis.

Gilles Vergnaud , Christine Pourcel
Methods in Molecular Biology, 2009, 551, pp.141-58. ⟨10.1007/978-1-60327-999-4_12⟩
Journal articles hal-00397743v1

Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci.

Yanjun Li , Yujun Cui , Yolande Hauck , Mikhail E Platonov , Erhei Dai
PLoS ONE, 2009, 4 (6), pp.e6000. ⟨10.1371/journal.pone.0006000⟩
Journal articles hal-00399011v1

Comparison of two commercial assays for the characterization of rpoB mutations in Mycobacterium tuberculosis and description of new mutations conferring weak resistance to rifampicin.

Yolande Hauck , Michel Fabre , Gilles Vergnaud , Charles Soler , Christine Pourcel
Journal of Antimicrobial Chemotherapy, 2009, epub ahead of print. ⟨10.1093/jac/dkp204⟩
Journal articles hal-00397748v1

A rapid allele variant discrimination method for Yersinia pestis strains based on high-resolution melting curve analysis.

Andrea Ciammaruconi , Saverio Grassi , Giovanni Faggioni , Riccardo de Santis , Valentina Pittiglio
Diagnostic Microbiology and Infectious Disease, 2009, 65 (1), pp.7-13. ⟨10.1016/j.diagmicrobio.2009.04.015⟩
Journal articles hal-00527486v1

Validation of ten new polymorphic tandem repeat loci and application to the MLVA typing of Burkholderia pseudomallei isolates collected in Singapore from 1988 to 2004.

Michelle Wong Su Yen , Olivier Lisanti , François Thibault , Toh Su San , Loh Gek Kee
Journal of Microbiological Methods, 2009, epub ahead of print. ⟨10.1016/j.mimet.2009.03.005⟩
Journal articles hal-00374726v1

Evaluation of a Multilocus Variable-Number Tandem-Repeat Analysis Scheme for Typing Human Brucella Isolates in a Region of Brucellosis Endemicity

M. M. Kattar , R. F. Jaafar , G. F. Araj , P. Le Fleche , G. M. Matar
Journal of Clinical Microbiology, 2008, 46 (12), pp.3935-40. ⟨10.1128/JCM.00464-08⟩
Journal articles hal-01160734v1

Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp.

Olivier Gorgé , Stéphanie Lopez , Valérie Hilaire , Olivier Lisanti , Vincent Ramisse
Journal of Clinical Microbiology, 2008, 46 (3), pp.1026-36. ⟨10.1128/JCM.02027-07⟩
Journal articles hal-00264071v1

High resolution typing of Chlamydophila psittaci by multilocus VNTR analysis (MLVA).

Karine Laroucau , Simon Thierry , Fabien Vorimore , Kinndle Blanco , Erhard Kaleta
Infection, Genetics and Evolution, 2008, 8 (2), pp.171-81. ⟨10.1016/j.meegid.2007.12.002⟩
Journal articles hal-00241850v1

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
Nucleic Acids Research, 2008, 36 (Web Server issue), pp.W145-8. ⟨10.1093/nar/gkn228⟩
Journal articles hal-00297231v1

Isolation of Brucella microti from soil.

Holger C Scholz , Zdenek Hubalek , Jirina Nesvadbova , Herbert Tomaso , Gilles Vergnaud
Emerging Infectious Diseases, 2008, 14 (8), pp.1316-7
Journal articles hal-00356292v1

Fieldable genotyping of Bacillus anthracis and Yersinia pestis based on 25-loci Multi Locus VNTR Analysis.

Andrea Ciammaruconi , Saverio Grassi , Riccardo de Santis , Giovanni Faggioni , Valentina Pittiglio
BMC Microbiology, 2008, 8, pp.21. ⟨10.1186/1471-2180-8-21⟩
Journal articles hal-00264077v1

Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats.

Yujun Cui , Yanjun Li , Olivier Gorgé , Mikhail E Platonov , Yanfeng Yan
PLoS ONE, 2008, 3 (7), pp.e2652. ⟨10.1371/journal.pone.0002652⟩
Journal articles hal-00297130v1

Brucella microti sp. nov., isolated from the common vole Microtus arvalis.

Holger C Scholz , Zdenek Hubalek , Ivo Sedlácek , Gilles Vergnaud , Herbert Tomaso
International Journal of Systematic and Evolutionary Microbiology, 2008, 58 (Pt 2), pp.375-82. ⟨10.1099/ijs.0.65356-0⟩
Journal articles hal-00220401v1

Multiple-locus variable-number tandem-repeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients.

Hoang Vu-Thien , Gaëlle Corbineau , Katia Hormigos , Brigitte Fauroux , Harriet Corvol
Journal of Clinical Microbiology, 2007, 45 (10), pp.3175-83. ⟨10.1128/JCM.00702-07⟩
Journal articles hal-00192548v1

Assessment of genetic stability of Brucella melitensis Rev 1 vaccine strain by multiple-locus variable-number tandem repeat analysis.

David García-Yoldi , Philippe Le Fleche , Clara M Marín , María J de Miguel , Pilar M Muñoz
Vaccine, 2007, 25 (15), pp.2858-62. ⟨10.1016/j.vaccine.2006.09.063⟩
Journal articles hal-00195331v1

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
BMC Bioinformatics, 2007, 8, pp.172. ⟨10.1186/1471-2105-8-172⟩
Journal articles hal-00194456v1

On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing.

Ibtissem Grissa , Patrick Bouchon , Christine Pourcel , Gilles Vergnaud
Biochimie, 2007, epub ahead of print. ⟨10.1016/j.biochi.2007.07.014⟩
Journal articles hal-00195167v1

Analysis of the three Yersinia pestis CRISPR loci provides new tools for phylogenetic studies and possibly for the investigation of ancient DNA.

Gilles Vergnaud , Yanjun Li , Olivier Gorgé , Yujun Cui , Yajun Song
Advances in Experimental Medicine and Biology, 2007, 603, pp.327-38
Journal articles hal-00195235v1

Evaluation of Brucella MLVA typing for human brucellosis.

Sascha Al Dahouk , Philippe Le Flèche , Karsten Nöckler , Isabelle Jacques , Maggy Grayon
Journal of Microbiological Methods, 2007, 69 (1), pp.137-45. ⟨10.1016/j.mimet.2006.12.015⟩
Journal articles hal-00195323v1

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
Nucleic Acids Research, 2007, 35 (Web Server issue), pp.W52-7. ⟨10.1093/nar/gkm360⟩
Journal articles hal-00194414v1

Comparison of Multiple-Locus Variable-Number Tandem-Repeat Analysis with Other PCR-Based Methods for Typing Brucella suis Isolates.

David García-Yoldi , Philippe Le Fleche , María J de Miguel , Pilar M Muñoz , José M Blasco
Journal of Clinical Microbiology, 2007, 45 (12), pp.4070-2. ⟨10.1128/JCM.01096-07⟩
Journal articles hal-00195163v1

Identification of variable-number tandem-repeat (VNTR) sequences in Legionella pneumophila and development of an optimized multiple-locus VNTR analysis typing scheme.

Christine Pourcel , Paolo Visca , Baharak Afshar , Silvia d'Arezzo , Gilles Vergnaud
Journal of Clinical Microbiology, 2007, 45 (4), pp.1190-9. ⟨10.1128/JCM.02078-06⟩
Journal articles hal-00195326v1

Genotyping of Bacillus anthracis strains based on automated capillary 25-loci multiple locus variable-number tandem repeats analysis

F. Lista , G. Faggioni , S. Valjevac , A. Ciammaruconi , J. Vaissaire
BMC Microbiology, 2006, 6, pp.33
Journal articles hal-00080023v1
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Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay

Philippe Le Fleche , Isabelle Jacques , Maggy Grayon , Sascha Al Dahouk , Patrick Bouchon
BMC Microbiology, 2006, 6, pp.ArtNo9. ⟨10.1186/1471-2180-6-9⟩
Journal articles hal-02667971v1

Molecular characterization of Coxiella burnetii isolates by infrequent restriction site-PCR and MLVA typing

N. Arricau-Bouvery , Y. Hauck , A. Bejaoui , D. Frangoulidis , C. C Bodier
BMC Microbiology, 2006, 6, pp.38
Journal articles hal-00080021v1
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Molecular characterization of Coxiella burnetii isolates by infrequent restriction site-PCR and MLVA typing

Nathalie Arricau-Bouvery , Yolande Hauck , Awatef Bejaoui , Dimitrios Frangoulidis , Christelle Bodier
BMC Microbiology, 2006, 6 (38), pp.1-14
Journal articles hal-02666669v1

Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay

P. Le Flèche , I. Jacques , M. Grayon , S. Al Dahouk , P. Bouchon
BMC Microbiology, 2006, 6, pp.9
Journal articles hal-00080049v1

Evaluation and selection of tandem repeat loci for streptococcus

J. L Koeck , B. M Njanpop-Lafourcade , S. Cade , E. Varon , L. Sangare
BMC Microbiology, 2005, 5, pp.66
Journal articles hal-00080043v1

Minisatellite polymorphism as a tool to distinguish closely related Lactococcus lactis strains.

Pascal Quénée , Elodie Lepage , Woojin Scott Kim , Gilles Vergnaud , Alexandra Gruss
FEMS Microbiology Letters, 2005, 248 (1), pp.101-9. ⟨10.1016/j.femsle.2005.05.026⟩
Journal articles hal-01158315v1

CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

C Pourcel , G Salvignol , Gilles Vergnaud
Microbiology, 2005, 151 (Pt 3), pp.653-63. ⟨10.1099/mic.0.27437-0⟩
Journal articles hal-01158317v1

Yersinia pestis genotyping.

Gilles Vergnaud
Emerging Infectious Diseases, 2005, 11 (8), 1317-8; author reply 1318-9
Journal articles hal-01158314v1

Comparison of minisatellie polymorphisms in the Bacillus cereus complex: a simple assay for large-scale screening and identification of strains most closely related to Bacillus anthracis

S. Valjevac , V. Hilaire , O. Lisanti , F. Ramisse , E. Fernandez
Applied and Environmental Microbiology, 2005, 71, pp.6613-23
Journal articles hal-00079606v1

Failure of a short-term antibiotic therapy for human brucellosis using ciprofloxacin. A study on in vitro susceptibility of Brucella strains

K. Al Dahouk , R. M Hagen , K. Nockler , H. Tomaso , M. Wittig
Chemotherapy, 2005, 51, pp.352-6
Journal articles hal-00079714v1

A nose-only apparatus for airborne delivery of Mycobacterium tuberculosis to mice: calibration of biological parameters.

Céline Louveau , Damien Descroix , Laurence Garnier , Iroudayanadin Delamanche , Pierre Chavarot
Microbes and Infection, 2005, 7 (3), pp.457-66. ⟨10.1016/j.micinf.2004.11.019⟩
Journal articles hal-01158316v1
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Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis

Christine Pourcel , Flore André-Mazeaud , Heinrich Neubauer , Françoise Ramisse , Gilles Vergnaud
BMC Microbiology, 2004, 4 (1), pp.22. ⟨10.1186/1471-2180-4-22⟩
Journal articles hal-01158319v1
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High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "M. canettii".

Michel Fabre , Jean-Louis Koeck , Philippe Le Flèche , Fabrice Simon , Vincent Hervé
Journal of Clinical Microbiology, 2004, 42 (7), pp.3248-55. ⟨10.1128/JCM.42.7.3248-3255.2004⟩
Journal articles hal-01158318v1
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Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource.

France Denoeud , Gilles Vergnaud
BMC Bioinformatics, 2004, 5, pp.4. ⟨10.1186/1471-2105-5-4⟩
Journal articles hal-01158321v1
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Predicting human minisatellite polymorphism.

France Denoeud , Gilles Vergnaud , Gary Benson
Genome Research, 2003, 13 (5), pp.856-67
Journal articles hal-01158326v1

DNA-DNA hybridization study of Burkholderia species using genomic DNA macro-array analysis coupled to reverse genome probing.

Vincent Ramisse , Jacques Balandreau , François Thibault , Dominique Vidal , Gilles Vergnaud
International Journal of Systematic and Evolutionary Microbiology, 2003, 53 (Pt 3), pp.739-46. ⟨10.1099/ijs.0.02483-0⟩
Journal articles hal-01158322v1
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Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping

Christine Pourcel , Yelena Vidgop , Françoise Ramisse , Gilles Vergnaud , Cuong Tram
Journal of Clinical Microbiology, 2003, 41 (5), pp.1819-26. ⟨10.1128/JCM.41.5.1819-1826.2003⟩
Journal articles hal-01158324v1
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High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing.

Philippe Le Flèche , Michel Fabre , France Denoeud , Jean-Louis Koeck , Gilles Vergnaud
BMC Microbiology, 2002, 2 (1), pp.37. ⟨10.1186/1471-2180-2-37⟩
Journal articles hal-01158328v1
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Segmental polymorphisms in the proterminal regions of a subset of human chromosomes.

Hera Der-Sarkissian , Gilles Vergnaud , Yves-Marie Borde , Gilles Thomas , José-Arturo Londoño-Vallejo
Genome Research, 2002, 12 (11), pp.1673-8. ⟨10.1101/gr.322802⟩
Journal articles hal-01158329v1
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A dominant modifier of transgene methylation is mapped by QTL analysis to mouse chromosome 13

Pascale Valenza-Schaerly , Benjamin Pickard , Jörn Walter , M Jung , Lucille Pourcel
Genome Research, 2001, 11 (3), pp.382-8. ⟨10.1101/gr.163801⟩
Journal articles hal-01158345v1
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Use of a set of highly polymorphic minisatellite probes for the identification of cryptic 1p36.3 deletions in a large collection of patients with idiopathic mental retardation.

F Giraudeau , L Taine , V Biancalana , B Delobel , H Journel
Journal of Medical Genetics, 2001, 38 (2), pp.121-5. ⟨10.1136/jmg.38.2.121⟩
Journal articles hal-01158343v1
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A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis.

Philippe Le Flèche , Yolande Hauck , Lucie Onteniente , Agnès Prieur , France Denoeud
BMC Microbiology, 2000, 1 (1), pp.2. ⟨10.1186/1471-2180-1-2⟩
Journal articles hal-01158341v1

Children of chernobyl cleanup workers do not show elevated rates of mutations in minisatellite alleles.

L A Livshits , S G Malyarchuk , S A Kravchenko , G H Matsuka , E M Lukyanova
Radiation Research, 2000, 155 (1 Pt 1), pp.74-80
Journal articles hal-01159809v1

The SH2D2A gene encoding the T-cell-specific adapter protein (TSAd) is localized centromeric to the CD1 gene cluster on human Chromosome 1.

K Z Dai , Gilles Vergnaud , A Ando , H Inoko , A Spurkland
Immunogenetics, 2000, 51 (3), pp.179-85
Journal articles hal-01159807v1

Minisatellites: mutability and genome architecture.

Gilles Vergnaud , France Denoeud
Genome Research, 2000, 10 (7), pp.899-907
Journal articles hal-01159813v1

Linkage and physical mapping of rat microsatellites derived from minisatellite loci.

F Giraudeau , F Apiou , V Amarger , P J Kaisaki , M T Bihoreau
Mammalian Genome, 1999, 10 (4), pp.405-9. ⟨10.1007/s003359901012⟩
Journal articles hal-01160635v1

Meiotic instability of human minisatellite CEB1 in yeast requires DNA double-strand breaks.

H Debrauwère , J Buard , J Tessier , D Aubert , Gilles Vergnaud
Nature Genetics, 1999, 23 (3), pp.367-71. ⟨10.1038/15557⟩
Journal articles hal-01159817v1

Finding new human minisatellite sequences in the vicinity of long CA-rich sequences.

F Giraudeau , E Petit , H Avet-Loiseau , Y Hauck , Gilles Vergnaud
Genome Research, 1999, 9 (7), pp.647-53
Journal articles hal-01160634v1
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Recent human-specific spreading of a subtelomeric domain.

S Monfouilloux , H Avet-Loiseau , V Amarger , I Balazs , C Pourcel
Genomics, 1998, 51 (2), pp.165-76. ⟨10.1006/geno.1998.5358⟩
Journal articles hal-01160639v1

[Structure and evolution of human sub-telomeric regions].

Gilles Vergnaud
Journal de la Société de Biologie, 1998, 193 (1), pp.35-40
Journal articles hal-01159815v1
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A polymorphic porcine dinucleotide repeat S0559 (BHT0107) at chromosome 6q28-q31.

B Høyheim , V Amarger , Gilles Vergnaud , P D Thomsen
Animal Genetics, 1998, 29 (6), pp.460
Journal articles hal-01160636v1
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Analysis of distribution in the human, pig, and rat genomes points toward a general subtelomeric origin of minisatellite structures.

V Amarger , D Gauguier , Martine M. Yerle , F Apiou , P Pinton
Genomics, 1998, 52 (1), pp.62-71. ⟨10.1006/geno.1998.5365⟩
Journal articles hal-01160637v1

Further evidence for elevated human minisatellite mutation rate in Belarus eight years after the Chernobyl accident.

y E Dubrova , V N Nesterov , N G Krouchinsky , V A Ostapenko , Gilles Vergnaud
Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 1997, 381 (2), pp.267-78. ⟨10.1016/s0027-5107(97)00212-1⟩
Journal articles hal-01160640v1

Molecular-cytogenetic detection of a deletion of 1p36.3.

F Giraudeau , D Aubert , I Young , S Horsley , S Knight
Journal of Medical Genetics, 1997, 34 (4), pp.314-7
Journal articles hal-01160642v1

Stability of microsatellites and minisatellites in Bloom syndrome, a human syndrome of genetic instability.

F Foucault , J Buard , F Praz , C Jaulin , D Stoppa-Lyonnet
Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 1996, 362 (3), pp.227-36. ⟨10.1016/0921-8777(95)00047-X⟩
Journal articles hal-01160655v1

A genetic linkage map of the rat derived from recombinant inbred strains.

M Pravenec , D Gauguier , J J Schott , J Buard , V Kren
Mammalian Genome, 1996, 7 (2), pp.117-27. ⟨10.1007/s003359900031⟩
Journal articles hal-01160656v1

Allelic loss of the short arm of chromosome 4 in neuroblastoma suggests a novel tumour suppressor gene locus

Huib Caron , Peter van Sluis , Roman Buschman , Ruth Pereira Do Tanque , Patricia Maes
Human Genetics, 1996, pp.834-837
Journal articles hal-01160647v1

European Gene Mapping Project (EUROGEM): breakpoint panels for human chromosomes based on the CEPH reference families. Centre d'Etude du Polymorphisme Humain.

S A Cox , J Attwood , S P Bryant , R Bains , S Povey
Annals of Human Genetics, 1996, 60 (Pt 6), pp.447-86
Journal articles hal-01160645v1

The CEPH consortium linkage map of human chromosome 16.

H M Kozman , T P Keith , H Donis-Keller , R L White ,