Hadi Quesneville

Hadi Quesneville Directeur adjoint - Direction pour la Science Ouverte (DipSO) Administrateur des Données Algorithmes et Codes de la recherche (ADAC)
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Présentation

Thèse en génétique des populations et bioinformatique. Post-doc en génétique épidémiologique. Travail dans le domaine de la génomique depuis plus de 20 ans, développant des méthodes et des outils informatiques pour annoter et explorer les génomes à travers l’intégration et l’analyse des données “omics”.

Développe des e-infrastructures faisant évoluer leur organisation pour suivre les évolutions scientifiques et technologiques de la biologie. Initiateur et ancien pilote de la WheatIS, un système d’information pour la génétique et la génomique du blé, construit sous l’égide de la wheat initiative, une initiative internationale pour coodonner la recherche sur le blé, et ancien coordinateur d’un nœud plante de l’Institut Français de Bioinformatique, nœud français de l’infrastructure bioinformatique européenne Elixir.

Aujourd'hui, chargé de mission auprès de la Direction Générale Déléguée à la Science et l’Innovation d’INRAE pour la gouvernance des données, des algorithmes, des codes et de l'IA en tant qu’Administrateur des données scientifique d’INRAE (Chief Data Officer). Directeur adjoint en charge du numérique scientifique à la direction pour la science ouverte.


Compétences

génomique gestion de données gouvernance des données bio informatique systèmes d'information

Publications

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Publications

A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species

Somia Saidi , Mathieu Blaison , María del Pilar Rodríguez-Ordóñez , Johann Confais , Hadi Quesneville

Genome Biology, 2026, ⟨10.1186/s13059-026-03984-5⟩

Article dans une revue hal-05513831v1
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SyntenyViewer: a comparative genomics-driven translational research tool

Raphael Flores , Cécile Huneau , Laura Burlot , Mathilde Lainé , Erik Kimmel et al.

Database - The journal of Biological Databases and Curation, 2023, 2023, ⟨10.1093/database/baad027⟩

Article dans une revue hal-04099923v1
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Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila

Gabriel Rech , Santiago Radío , Sara Guirao-Rico , Laura Aguilera , Vivien Horvath et al.

Nature Communications, 2022, 13 (1), pp.1-16. ⟨10.1038/s41467-022-29518-8⟩

Article dans une revue hal-03807727v1

Traces of transposable elements in genome dark matter co-opted by flowering gene regulation networks

Agnès Baud , Mariène Wan , Danielle Nouaud , Nicolas Francillonne , Dominique Anxolabéhère et al.

Peer Community Journal, 2022, 2, pp.e14. ⟨10.24072/pcjournal.68⟩

Article dans une revue hal-03807713v1
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Meeting the Challenges Facing Wheat Production: The Strategic Research Agenda of the Global Wheat Initiative

Peter Langridge , Michael Alaux , Nuno Felipe Almeida , Karim Ammar , Michael Baum et al.

Agronomy, 2022, 12 (11), pp.2767. ⟨10.3390/agronomy12112767⟩

Article dans une revue hal-03942478v1
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A Genomic Survey of Mayetiola destructor Mobilome Provides New Insights into the Evolutionary History of Transposable Elements in the Cecidomyiid Midges

Wiem Ben Amara , Hadi Quesneville , Maha Mezghani Khemakhem

PLoS ONE, 2021, 16 (10), pp.1-24. ⟨10.1371/journal.pone.0257996⟩

Article dans une revue hal-03807721v1
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TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation

. The Te Hub Consortium , Tyler A. Elliott , Tony Heitkam , Robert Hubley , Hadi Quesneville et al.

Mobile DNA, 2021, 12 (1), ⟨10.1186/s13100-021-00244-0⟩

Article dans une revue hal-03400275v1

Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS)

Taner Sen , Mario Caccamo , David Edwards , Hadi Quesneville

F1000Research, 2020, 9, pp.536. ⟨10.12688/f1000research.23525.1⟩

Article dans une revue hal-02955929v1

Twenty years of transposable element analysis in the Arabidopsis thaliana genome

Hadi Quesneville

Mobile DNA, 2020, 11 (1), ⟨10.1186/s13100-020-00223-x⟩

Article dans une revue hal-02955915v1

Progress in single-access information systems for wheat and rice crop improvement

Armin Scheben , Chon-Kit Kenneth Chan , Locedie Mansueto , Ramil Mauleon , Pierre Larmande et al.

Briefings in Bioinformatics, 2019, 20 (2), pp.565-571. ⟨10.1093/bib/bby016⟩

Article dans une revue hal-02962718v1
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Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.

Gabriel E Rech , María Bogaerts-Márquez , Maite G Barrón , Miriam Merenciano , José Luis Villanueva-Cañas et al.

PLoS Genetics, 2019, 15 (2), pp.e1007900. ⟨10.1371/journal.pgen.1007900⟩

Article dans une revue hal-02306987v1
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Applying FAIR principles to plant phenotypic data management in GnpIS

Cyril Pommier , Célia Michotey , Guillaume Cornut , Pierre Roumet , Eric Duchêne et al.

Plant Phenomics, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩

Article dans une revue hal-02624031v1
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RepetDB: a unified resource for transposable element references

Joëlle Amselem , Guillaume Cornut , Nathalie Choisne , Michael Alaux , Françoise Alfama Depauw et al.

Mobile DNA, 2019, 10, pp.1-8. ⟨10.1186/s13100-019-0150-y⟩

Article dans une revue hal-02625212v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat et al.

Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩

Article dans une revue hal-01820559v1
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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Françoise Alfama et al.

Genome Biology, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩

Article dans une revue hal-02278879v1
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AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée

Pierre Adenot , Stéphane Bansard , David Benaben , Veronique Brunaud , Christophe Caron et al.

Cahier des Techniques de l'INRA, 2018, N° Spécial: Données de la recherche, 7 p

Article dans une revue hal-02097192v1

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Rudi Appels , Kellye Eversole , Nils Stein , Catherine Feuillet , Beat Keller et al.

Science, 2018, 361 (6403), ⟨10.1126/science.aar7191⟩

Article dans une revue hal-04331004v1

Shifting the limits in wheat research and breeding using a fully annotated reference genome

. International Wheat Genome Sequencing Consortium (iwgsc) , Arnaud Bellec , Helene Berges , Sonia Vautrin , Michael Alaux et al.

Science, 2018, 361 (6403), pp.7191. ⟨10.1126/science.aar7191⟩

Article dans une revue hal-01885399v1

A high-quality sequence of Rosa chinensis to elucidate genome structure and ornamental traits

Laurence Hibrand-Saint Oyant , Tom Ruttink , Latifa Hamama , Ilya Kirov , Deepika Lakhwani et al.

Nature Plants, 2018, 4, pp.473-484. ⟨10.1101/254102⟩

Article dans une revue hal-02516576v1
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The Rosa genome provides new insights into the domestication of modern roses

Olivier Raymond , Jerome Gouzy , Jérémy Just , Hélène Badouin , Marion Verdenaud et al.

Nature Genetics, 2018, 50 (6), pp.772-777. ⟨10.1038/s41588-018-0110-3⟩

Article dans une revue hal-01798003v1
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High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

Nicolas Daccord , Jean-Marc Celton , G. Linsmith , C. Becker , Nathalie Choisne et al.

Nature Genetics, 2017, 49 (7), pp.1099-1108. ⟨10.1038/ng.3886⟩

Article dans une revue hal-01602554v1
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De novo annotation of transposable elements : tackling the fat genome issue

Véronique Jamilloux , Josquin Daron , Frédéric Choulet , Hadi Quesneville

Proceedings of the IEEE, 2017, 105 (3), pp.474-481. ⟨10.1109/JPROC.2016.2590833⟩

Article dans une revue hal-02622009v1
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Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.)

Umar Quraishi , Caroline Pont , Qurat-Ul Ain , Raphaël Flores , Laura Burlot et al.

Frontiers in Plant Science, 2017, 8, pp.1-12. ⟨10.3389/fpls.2017.01843⟩

Article dans une revue hal-02285542v1

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Thomas Mock , Robert P Otillar , Jan Strauss , Mark Mcmullan , Pirita Paajanen et al.

Nature, 2017, 541, pp.536-540. ⟨10.1038/nature20803⟩

Article dans une revue hal-01587937v1
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Developing data interoperability using standards: A wheat community use case

Esther Dzale Yeumo , Michaël Alaux , Elizabeth Arnaud , Sophie Aubin , Ute Baumann et al.

F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩

Article dans une revue lirmm-01652022v2
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Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anaïs Gouin , Anthony Bretaudeau , Kiwoong Nam , Sylvie Gimenez , Jean-Marc Aury et al.

Scientific Reports, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩

Article dans une revue hal-01633879v1

De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue

Véronique Jamilloux , Josquin Daron , Frédéric Choulet , Hadi Quesneville

Proceedings of the IEEE, 2017, 105 (5), pp.978-978. ⟨10.1109/JPROC.2017.2680218⟩

Article dans une revue hal-02618951v1
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Towards an open grapevine information system

Anne-Françoise Adam-Blondon , Michael Alaux , Cyril Pommier , D Cantu , Z-M Cheng et al.

Horticulture research, 2016, 3, pp.16056. ⟨10.1038/hortres.2016.56⟩

Article dans une revue (article de synthèse) hal-01404714v1

Reconciling the evolutionary origin of bread wheat (Triticum aestivum)

Moaine El Baidouri , Florent Murat , Maeva Veyssière , Mélanie Molinier , Raphaël-Gauthier Flores et al.

New Phytologist, 2016, 213 (3), ⟨10.1111/nph.14113⟩

Article dans une revue hal-01361976v1
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TransPLANT resources for triticeae genomic data

Manuel Spannagl , Michael M. Alaux , Matthias Lange , Dan M. Bolser , Kai Christian Bader et al.

PLANT GENOME, 2016, 9 (1), 13 p. ⟨10.3835/plantgenome2015.06.0038⟩

Article dans une revue hal-02635899v1
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International Congress on Transposable elements (ICTE 2016) in Saint Malo: mobile elements under the sun of Brittany

Pascale Lesage , Mireille Bétermier , Antoine Bridier-Nahmias , Michael Chandler , Séverine Chambeyron et al.

Mobile DNA, 2016, 7 (1), pp.19. ⟨10.1186/s13100-016-0075-7⟩

Article dans une revue inserm-01384467v1
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The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 subunit LHP1 function in concert to regulate the transcription of stress-responsive genes

Anne M. Molitor , David Latrasse , Matthias Zytnicki , Philippe P. Andrey , Nicole Houba Hérin et al.

The Plant cell, 2016, 28 (9), ⟨10.1105/tpc.16.00244⟩

Article dans une revue hal-02633928v1
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Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

Ophélie Jouffroy , Surya Saha , Lukas Mueller , Hadi Quesneville , Florian Maumus

BMC Genomics, 2016, 17 (1), pp.1-15. ⟨10.1186/s12864-016-2980-z⟩

Article dans une revue hal-02631886v1
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Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015)

Florent Murat , Alexandra Louis , Florian Maumus , Alix Armero , Richard Cooke et al.

Genome Biology, 2016, 17 (64), ⟨10.1186/s13059-016-0887-2⟩

Article dans une revue hal-02630062v1
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International Congress on Transposable elements (ICTE 2016) in Saint Malo: mobile elements under the sun of Brittany

Pascale Lesage , Mireille Bétermier , Antoine Bridier-Nahmias , Michael Chandler , Séverine Chambeyron et al.

Mobile DNA, 2016, 7 (1), pp.19. ⟨10.1186/s13100-016-0075-7⟩

Article dans une revue hal-04943687v1

Impact and insights from ancient repetitive elements in plant genomes

Florian Maumus , Hadi Quesneville

Current Opinion in Plant Biology, 2016, 30, pp.41-46. ⟨10.1016/j.pbi.2016.01.003⟩

Article dans une revue istex hal-02638420v1
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Isabelle Lesur , Grégoire G. Le Provost , Pascal Bento , Corinne da Silva , Jean-Charles Leplé et al.

BMC Genomics, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩

Article dans une revue hal-02285504v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe et al.

Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩

Article dans une revue istex hal-01579667v1
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Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

Eva-Maria Willing , Vimal Rawat , Terezie Mandáková , Florian Maumus , Geo Velikkakam James et al.

Nature Plants, 2015, 1 (2), pp.14023-14028. ⟨10.1038/nplants.2014.23⟩

Article dans une revue hal-01179557v1

Impact of transposable elements on insect genomes and biology

Florian Maumus , Anna-Sophie Fiston-Lavier , Hadi Quesneville

Current Opinion in Insect Science, 2015, 7, pp.30-36. ⟨10.1016/j.cois.2015.01.001⟩

Article dans une revue istex hal-02640108v1
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The BioMart community portal: an innovative alternative to large, centralized data repositories

Damian Smedley , Syed Haider , Steffen Durinck , Luca Pandini , Paolo Provero et al.

Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩

Article dans une revue hal-01146849v1
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Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

Joelle J. Amselem , Marielle Vigouroux , Simone Oberhaensli , James K M Brown , Laurence V Bindschedler et al.

BMC Genomics, 2015, 16 (1), pp.917. ⟨10.1186/s12864-015-2185-x⟩

Article dans une revue hal-01264935v1
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Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Michael H Perlin , Joelle J. Amselem , Eric Fontanillas , Su San Toh , Zehua Chen et al.

BMC Genomics, 2015, 16 (461), ⟨10.1186/s12864-015-1660-8⟩

Article dans une revue hal-01186421v1
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Understanding Brassicaceae evolution through ancestral genome reconstruction

Florent Murat , Alexandra Louis , Florian Maumus , Alix Armero Villanueva , Richard Cooke et al.

Genome Biology, 2015, 16 (262), ⟨10.1186/s13059-015-0814-y⟩

Article dans une revue hal-01281832v1
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Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes

Joelle J. Amselem , Marc-Henri Lebrun , Hadi Quesneville

BMC Genomics, 2015, 16 (1), pp.141. ⟨10.1186/s12864-015-1347-1⟩

Article dans une revue hal-01142763v1
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Karyotype and Gene Order Evolution from ReconstructedExtinct Ancestors Highlight Contrasts in Genome Plasticity ofModern Rosid Crops

Florent Murat , Rongzhi R. Zhang , Sébastien Guizard , Haris Gavranovic , Raphael Flores et al.

Genome Biology and Evolution, 2015, 7 (3), pp.735-749. ⟨10.1093/gbe/evv014⟩

Article dans une revue hal-01133906v1
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A call for benchmarking transposable element annotation methods.

Douglas R Hoen , Glenn Hickey , Guillaume Bourque , Josep Casacuberta , Richard Cordaux et al.

Mobile DNA, 2014, 6, pp.13. ⟨10.1186/s13100-015-0044-6⟩

Article dans une revue hal-01204840v1
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Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution

Andrew D W Geering , Florian Maumus , Dario Copetti , Nathalie Choisne , Derrick J Zwickl et al.

Nature Communications, 2014, 5, ⟨10.1038/ncomms6269⟩

Article dans une revue hal-02631214v1
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PASTEC: an automatic transposable element classification tool

Claire Hoede , Sandie Arnoux , Mark Moissette , Timothée Chaumier , Olivier Inizan et al.

PLoS ONE, 2014, 9 (5), pp.e91929. ⟨10.1371/journal.pone.0091929⟩

Article dans une revue hal-02639360v1
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The genome of the stress-tolerant wild tomato species Solanum pennellii

Anthony Bolger , Federico Scossa , Marie E Bolger , Christa Lanz , Florian Maumus et al.

Nature Genetics, 2014, 46 (9), pp.1034-1038. ⟨10.1038/ng.3046⟩

Article dans une revue hal-01204066v1
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Structural and Functional Partitioning of Bread Wheat Chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe et al.

Science, 2014, 345 (6194), ⟨10.1126/science.1249721⟩

Article dans une revue hal-02638189v1

Tedna: a transposable element de novo assembler

Matthias Zytnicki , Eduard Akhunov , Hadi Quesneville

Bioinformatics, 2014, (on-line), pp.1-3. ⟨10.1093/bioinformatics/btu365⟩

Article dans une revue hal-02630617v1
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Ancestral repeats have shaped epigenome and genome composition for millions of years in<em> Arabidopsis thaliana</em>

Florian Maumus , Hadi Quesneville

Nature Communications, 2014, 5, 9 p. ⟨10.1038/ncomms5104⟩

Article dans une revue hal-02633174v1

Studying the organization of genes encoding plant cell wall degrading enzymes in <em>Chrysomela tremula</em> provides insights into a leaf beetle genome

Y. Pauchet , C. A. Saski , F. A. Feltus , Isabelle I. Luyten , Hadi Quesneville et al.

Insect Molecular Biology, 2014, 23 (3), pp.286-300. ⟨10.1111/imb.12081⟩

Article dans une revue istex hal-02632374v1

Genome interplay in the grain transcriptome of hexaploid bread wheat

Matthias Pfeifer , Karl G. Kugler , Simen R. Sandve , Bujie Zhan , Heidi Rudi et al.

Science, 2014, 345 (6194), pp.287-287. ⟨10.1126/science.1250091⟩

Article dans une revue hal-02889033v1

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

. International Wheat Genome Sequencing Consortium (iwgsc) , Michael M. Alaux , Françoise F. Alfama-Depauw , Frédéric Choulet , Loïc Couderc et al.

Science, 2014, 345 (6194), pp.1251788. ⟨10.1126/science.1251788⟩

Article dans une revue hal-02640843v1
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Organization and evolution of transposable elements along the bread wheat chromosome 3B

Josquin Daron , Natasha Glover , Lise Pingault , Sébastien Theil , Véronique Jamilloux et al.

Genome Biology, 2014, 15 (12), pp.1-15. ⟨10.1186/s13059-014-0546-4⟩

Article dans une revue hal-02630315v1
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Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter

Florian Maumus , Hadi Quesneville

PLoS ONE, 2014, 9 (4), ⟨10.1371/journal.pone.0094101⟩

Article dans une revue hal-02636753v1
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GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Delphine D. Steinbach , Michael M. Alaux , Joelle J. Amselem , Nathalie Choisne , Sophie S. Durand et al.

Database - The journal of Biological Databases and Curation, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩

Article dans une revue hal-02648084v1

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

Tanja Slotte , Khaled M Hazzouri , J Arvid Agren , Daniel Koenig , Florian Maumus et al.

Nature Genetics, 2013, 45 (7), pp.831-835. ⟨10.1038/ng.2669⟩

Article dans une revue hal-02650401v1

Efficient comparison of sets of intervals with NC-lists

Matthias Zytnicki , Yufei Luo , Hadi Quesneville

Bioinformatics, 2013, 29 (7), pp.933-939. ⟨10.1093/bioinformatics/btt070⟩

Article dans une revue hal-02652069v1

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

Thomas Wicker , Simone Oberhaensli , Francis Parlange , Jan P Buchmann , Margarita Shatalina et al.

Nature Genetics, 2013, 45 (9), pp.1092-1098. ⟨10.1038/ng.2704⟩

Article dans une revue hal-02644273v1
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Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes

Caroline C. Pont , Florent Murat , Sébastien S. Guizard , Raphaël-Gauthier R.-G. Flores , Séverine S. Foucrier et al.

The Plant Journal, 2013, pp.1-29. ⟨10.1111/tpj.12366⟩

Article dans une revue hal-00964421v1
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Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

Vanessa Zanni , Angéline Eymery , Michael Coiffet , Matthias Zytnicki , Isabelle Luyten et al.

Proceedings of the National Academy of Sciences of the United States of America, 2013, ⟨10.1073/pnas.1313677110⟩

Article dans une revue hal-01189713v1
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Shared sub-genome dominance following polyploidization explains grass genome evolutionary plasticity from a 7 protochromosome ancestor with 16K protogenes

Florent Murat , Rongzhi R. Zhang , Sébastien S. Guizard , Raphaël-Gauthier R.-G. Flores , Alix A. Armero Villanueva et al.

Genome Biology and Evolution, 2013, 6 (1), pp.12-33. ⟨10.1093/gbe/evt200⟩

Article dans une revue hal-00964190v1

Shared subgenome dominance following polyploidization explains grass genome evolutionary plasticity from a seven protochromosome ancestor with 16K protogenes.

Florent Murat , Rongzhi Zhang , Sébastien Guizard , Raphael Flores , Alix Armero et al.

Genome Biology and Evolution, 2013, 6 (1), pp.12-33

Article dans une revue hal-01218128v1

The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium

J. Mark Cock , Lieven Sterck , Sophia Ahmed , Andrew E. Allen , Grigoris Amoutzias et al.

Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩

Article dans une revue hal-02649287v1
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TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes.

Philippe Leroy , Nicolas Guilhot , Hiroaki Sakai , Aurélien Bernard , Frédéric Choulet et al.

Frontiers in Plant Science, 2012, 3, pp.5. ⟨10.3389/fpls.2012.00005⟩

Article dans une revue hal-00753407v1
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International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories.

Abdelkader Aïnouche , Mireille Bétermier , Mick Chandler , Richard Cordaux , Gaël Cristofari et al.

Mobile DNA, 2012, 3 (1), pp.17. ⟨10.1186/1759-8753-3-17⟩

Article dans une revue inserm-00764323v1

In search of lost trajectories: recovering the diversification of transposable elements

Timothée T. Flutre , Emmanuelle E. Permal , Hadi H. Quesneville

Mobile Genetic Elements, 2011, 1 (2), pp.151-154. ⟨10.4161/mge.1.2.17094⟩

Article dans une revue hal-00956371v1
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S-MART, a software toolbox to aid RNA-seq data analysis

Matthias Zytnicki , Hadi Quesneville

PLoS ONE, 2011, 6 (10), pp.1-3. ⟨10.1371/journal.pone.0025988⟩

Article dans une revue hal-02645963v1
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Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

Ikhlak Ahmed , Alexis Sarazin , Chris Bowler , Vincent Colot , Hadi Quesneville

Nucleic Acids Research, 2011, 39 (16), pp.6919-6931. ⟨10.1093/nar/gkr324⟩

Article dans une revue hal-02647005v1
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Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Joelle J. Amselem , Christina A. Cuomo , Jan A. L. van Kan , Muriel Viaud , Ernesto P. Benito et al.

PLoS Genetics, 2011, 7 (8), ⟨10.1371/journal.pgen.1002230⟩

Article dans une revue hal-01190236v1
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Considering transposable element diversification in de novo annotation approaches

Timothée T. Flutre , Elodie E. Duprat , Catherine C. Feuillet , Hadi H. Quesneville

PLoS ONE, 2011, 6 (1), pp.1-15. ⟨10.1371/journal.pone.0016526⟩

Article dans une revue hal-00956366v1
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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien Duplessis , Christina A C. A. Cuomo , Yao-Cheng Y.-C. Lin , Andrea Aerts , Emilie Tisserant et al.

Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (22), pp.9166-9171. ⟨10.1073/pnas.1019315108⟩

Article dans une revue hal-01000169v1
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Formation of plant metabolic gene clusters within dynamic chromosomal regions

Ben Field , Anna-Sophie Lavier-Fiston , Ariane Kemen , Katrin Geisler , Hadi Quesneville et al.

Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (38), pp.16116-16121. ⟨10.1073/pnas.1109273108⟩

Article dans une revue hal-02647681v1
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Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect spodoptera frugiperda

Slavica Stanojcic , Sylvie Gimenez , Emmanuelle E. Permal , Francois F. Cousserans , Hadi Quesneville et al.

PLoS ONE, 2011, 6 (9), pp.1-14. ⟨10.1371/journal.pone.0024746⟩

Article dans une revue hal-02651170v1

Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism

Pietro D Spanu , James C Abbott , Joelle J. Amselem , Timothy A. Burgis , Darren M Soanes et al.

Science, 2010, 330 (6010), pp.1543-1546. ⟨10.1126/science.1194573⟩

Article dans une revue hal-02664949v1
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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Francis Martin , Annegret Kohler , Claude Murat , Raffaella Balestrini , Pedro M Coutinho et al.

Nature, 2010, 464 (7291), pp.1033-1038. ⟨10.1038/nature08867⟩

Article dans une revue cea-00907731v1
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The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae

J. Mark Cock , Lieven Sterck , Pierre Rouzé , Delphine Scornet , Andrew E. Allen et al.

Nature, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩

Article dans une revue cea-00906990v1

Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.

Nicolas Buisine , Hadi Quesneville , Vincent Colot

Genomics, 2008, 91 (5), pp.467-475. ⟨10.1016/j.ygeno.2008.01.005⟩

Article dans une revue istex hal-00280496v1

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Pierre Abad , Jerome Gouzy , Jean-Marc Aury , Philippe Castagnone-Sereno , Etienne Danchin et al.

Nature Biotechnology, 2008, 26 (8), pp.909-915. ⟨10.1038/nbt.1482⟩

Article dans une revue hal-01189285v1
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Genome-wide studies highlight indirect links between human replication origins and gene regulation.

Jean-Charles Cadoret , Françoise Meisch , Vahideh Hassan-Zadeh , Isabelle Luyten , Claire Guillet et al.

Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (41), pp.15837-42. ⟨10.1073/pnas.0805208105⟩

Article dans une revue hal-00332341v1
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Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells

Maria Berdasco , Rubén Alcázar , María Victoria García-Ortiz , Esteban Ballestar , Agustín F Fernández et al.

PLoS ONE, 2008, 3 (10), pp.e3306. ⟨10.1371/journal.pone.0003306⟩

Article dans une revue hal-02661856v1

Discovering and detecting transposable elements in genome sequences

Casey M Bergman , Hadi Quesneville

Briefings in Bioinformatics, 2007, 8 (6), pp.382-392. ⟨10.1093/bib/bbm048⟩

Article dans une revue hal-02665779v1

Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8

Clémentine Vitte , Cristian Chaparro , Hadi H. Quesneville , Olivier Panaud

Plant Science, 2007, 172 (1), pp.8-19. ⟨10.1016/j.plantsci.2006.07.008⟩

Article dans une revue istex hal-02114377v1

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.

Christina A Cuomo , Ulrich Güldener , Jin-Rong Xu , Frances Trail , B Gillian Turgeon et al.

Science, 2007, 317 (5843), pp.1400-2. ⟨10.1126/science.1143708⟩

Article dans une revue hal-00192479v1

Genome sequence of Aedes aegypti, a major arbovirus vector.

Vishvanath Nene , Jennifer R. Wortman , Daniel Lawson , Brian Haas , Chinnappa Kodira et al.

Science, 2007, 316 (5832), pp.1718-23. ⟨10.1126/science.1138878⟩

Article dans une revue hal-00156214v1
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A model of segmental duplication formation in Drosophila melanogaster

Anna-Sophie Fiston-Lavier , Dominique Anxolabéhère , Hadi Quesneville

Genome Research, 2007, 17 (10), pp.1458-1470. ⟨10.1101/gr.6208307⟩

Article dans une revue hal-02657996v1

Evolution of genes and genomes on the Drosophila phylogeny

. Drosophila 12 Genomes Consortium , Andrew G Clark , Michael B Eisen , Douglas R Smith , Casey M Bergman et al.

Nature, 2007, 450 (7167), pp.203-18. ⟨10.1038/nature06341⟩

Article dans une revue hal-02667683v1
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LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

Clémentine Vitte , Olivier Panaud , Hadi H. Quesneville

BMC Genomics, 2007, 8 (1), pp.218. ⟨10.1186/1471-2164-8-218⟩

Article dans une revue hal-02114382v1
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Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome.

Casey M Bergman , Hadi Quesneville , Dominique Anxolabéhère , Michael Ashburner

Genome Biology, 2006, 7 (11), pp.R112. ⟨10.1186/gb-2006-7-11-r112⟩

Article dans une revue hal-00134981v1
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P elements and MITE relatives in the whole genome sequence of Anopheles gambiae.

Hadi Quesneville , Danielle Nouaud , Dominique Anxolabéhère

BMC Genomics, 2006, 7, pp.214. ⟨10.1186/1471-2164-7-214⟩

Article dans une revue hal-00096293v1

Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots

Jan Drouaud , Christine Camilleri , Pierre-Yves Bourguignon , Aurélie Canaguier , Aurélie Bérard et al.

Genome Research, 2006, 16 (1) (1), pp.106-114. ⟨10.1101/gr.4319006⟩

Article dans une revue hal-00017439v1
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Combined evidence annotation of transposable elements in genome sequences

Hadi Quesneville , Casey M. Bergman , Olivier Andrieu , Delphine Autard , Danielle Nouaud et al.

PLoS Computational Biology, 2005, 1 (2), pp.e22. ⟨10.1371/journal.pcbi.0010022⟩

Article dans une revue hal-00009013v1

Recurrent recruitment of the THAP DNA-binding domain and molecular domestication of the P-transposable element

Hadi Quesneville , D Nouaud , D Anxolabéhère

Molecular Biology and Evolution, 2005, 22 (3), pp.741-746. ⟨10.1093/molbev/msi064⟩

Article dans une revue hal-02683097v1

Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation

Karin Eiglmeier , Patrick Wincker , Laurence Cattolico , Véronique Anthouard , Inge Holm et al.

Insect Biochemistry and Molecular Biology, 2005, 35 (8), pp.799-814. ⟨10.1016/j.ibmb.2005.02.020⟩

Article dans une revue istex hal-02683098v1
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Detection of transposable elements by their compositional bias

Olivier Andrieu , Anna-Sophie Fiston , Dominique Anxolabéhère , Hadi Quesneville

BMC Bioinformatics, 2004, 5 (94), pp.1-13. ⟨10.1186/1471-2105-5-94⟩

Article dans une revue hal-02682754v1
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Hoppel, a P-like element without introns: a P-element ancestral structure or a retrotranscription derivative?

Daphné Reiss , Hadi Quesneville , Danielle Nouaud , Olivier Andrieu , Dominique Anxolabéhère

Molecular Biology and Evolution, 2003, 20 (6), pp.869-879. ⟨10.1093/molbev/msg090⟩

Article dans une revue hal-02676873v1

Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes

Hadi Quesneville , Danielle Nouaud , Dominique Anxolabéhère

Journal of Molecular Evolution, 2003, 57 Suppl 1, pp.S50-S59. ⟨10.1007/s00239-003-0007-2⟩

Article dans une revue istex hal-02677603v1

Indication of linkage and genetic heterogeneity for asthma and atopy on chromosomes 8p and 12q in 107 French EGEA families

M-H Dizier , Hadi Quesneville , C Besse-Schmittler , M Guilloud-Bataille , H Selinger-Leneman et al.

European Journal of Human Genetics, 2003, 11 (8), pp.590-596. ⟨10.1038/sj.ejhg.5201014⟩

Article dans une revue hal-02677548v1
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Recurrent exon shuffling between distant P-element families

Danielle Nouaud , Hadi Quesneville , Dominique Anxolabéhère

Molecular Biology and Evolution, 2003, 20 (2), pp.190-199. ⟨10.1093/molbev/msg036⟩

Article dans une revue hal-02678803v1

Genetic algorithm-based model of evolutionary dynamics of class II transposable elements

Hadi Quesneville , Dominique Anxolabéhère

Journal of Theoretical Biology, 2001, 213 (1), pp.21-30. ⟨10.1006/jtbi.2001.2401⟩

Article dans une revue istex hal-02680860v1
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The triangle test statistic (TTS): a test of genetic homogeneity using departure from the triangle constraints in IBD distribution among affected sib-pairs

M.H. Dizier , Hadi Quesneville , B. Prum , H. Selinger-Leneman , F. Clerget-Darpoux

Annals of Human Genetics, 2000, 64 (Part 5), pp.433-442. ⟨10.1046/j.1469-1809.2000.6450433.x⟩

Article dans une revue hal-02696378v1
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Search for multifactorial disease susceptibility genes in founder populations

C. Bourgain , E. Genin , Hadi Quesneville , F. Clerget-Darpoux

Annals of Human Genetics, 2000, 64 (3), pp.255-265. ⟨10.1046/j.1469-1809.2000.6430255.x⟩

Article dans une revue hal-02696948v1

Departure from the triangle constraints in discordant sib pairs : a test for genetic heterogeneity

Hadi Quesneville , M H Dizier , Françoise Clerget-Darpoux

Genetic Epidemiology, 1999, 17, pp.S685-S689

Article dans une revue hal-02695519v1

Detection and modeling of disease susceptibility locus effects: how much can be learned from contrast of populations?

E. Genin , F. Guyon , P. Margaritte-Jeannin , Hadi Quesneville , F. Clerget-Darpoux

Genetic Epidemiology, 1999, 17 (S1), pp.S569-S574

Article dans une revue hal-02691228v1
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On the probability of identity states in permutable populations: reply to Cannings

E. Genin , Hadi Quesneville , F. Clerget-Darpoux

American Journal of Human Genetics, 1998, 62 (3), pp.726-727

Article dans une revue hal-02688331v1

Dynamics of transposable elements in metapopulations: a model of P element invasion in Drosophila

Hadi Quesneville

Theoretical Population Biology, 1998, 54 (2), pp.175-193. ⟨10.1006/tpbi.1997.1353⟩

Article dans une revue istex hal-02696142v1

A simulation of P element horizontal transfer in Drosophila

Hadi Quesneville , Dominique Anxolabéhère

Genetica, 1997, 100 (1-3), pp.295-307. ⟨10.1023/A:1018362402815⟩

Article dans une revue istex hal-02695516v1

Drosophila P element: transposition, regulation and evolution

Dario Coen , Bruno Lemaitre , Marion Delattre , Hadi Quesneville , Stéphane Ronsseray et al.

Genetica, 1994, 93 (1-3), pp.61-78. ⟨10.1007/BF01435240⟩

Article dans une revue hal-02713629v1

RepetDB: a database of reference TE sequences and their information

Nicolas Francillonne , Hadi Quesneville , Mariène Wan , Johann Confais

Annual meeting Mobil-ET, GDR CNRS 3546, Dec 2025, Paris, France

Communication dans un congrès hal-05407506v1

REPET v4.0: A Comprehensive Tool for Transposable Element Analysis

Etienne Bardet , Mariène Wan , Johann Confais , Hadi Quesneville

JOBIM 2025, Jul 2025, Bordeaux, France

Communication dans un congrès hal-05407604v1

TE Detection and Annotation Using Repet V4.0

Etienne Bardet , Johann Confais , Mariène Wan , Hadi Quesneville

International Plant & Animal Genome (PAG 32), Jan 2025, San diego (Californie), United States

Communication dans un congrès hal-05407576v1

REPET V4.0, making life easier for de novo TE annotation

Johann Confais , Mariène Wan , Etienne Bardet , Somia Saidi , Hadi Quesneville

12th Repeat Explorer Workshop “Repetitive DNA Annotation in Genome Assemblies.”, May 2025, České Budějovice, Czech Republic

Communication dans un congrès hal-05202100v1

The Brachypodium distachyon Pangenome Highlights Transposable Element Dynamics in the Species

Johann Confais , Somia Saidi , Hadi Quesneville

International Plant & Animal Genome (PAG 32), Jan 2025, San Diego (California), United States

Communication dans un congrès hal-04947937v1

Identifying the contribution of transposable elements to cis-regulatory elements in plants

Maud Fagny , Johann Joets , Basile Leduque , Leandro Quadrana , Hadi Quesneville et al.

IBRC2025, Jul 2025, Monte Verità, Switzerland

Communication dans un congrès hal-05227710v1

The Brachypodium distachyon Pangenome Highlights Transposable Element Dynamics in the Species

Johann Confais , Somia Saidi , Hadi Quesneville

International Brachypodium Research Conference 2025 (IBRC 2025), Jul 2025, Monte Verità, Switzerland

Communication dans un congrès hal-05202091v1

The Brachypodium distachyon pangenome highlights Transposable Element dynamics in the species

Johann Confais , Somia Saidi , Hadi Quesneville

Journées "BioinfOmics" sur la pangénomique, BioinfOmics, Dec 2024, Toulouse, France

Communication dans un congrès hal-04944985v1

Evolutionary Dynamics of Transposable Elements in Brachypodium distachyon Based on a Pangenomic Approach

Somia Saidi , Johann Confais , Hadi Quesneville

International Plant & Animal Genome (PAG 31), Jan 2024, San Diego, United States

Communication dans un congrès hal-04419364v1

A Benchmark for Transposable Element annotation tools

Hadi Quesneville

TEhub Workshop / International Congress on Transposable Elements, Apr 2024, Saint-Malo, France

Communication dans un congrès hal-04733449v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville

24th National Congress on Transposable Elements 2023 (CNET 2023), French research community working on transposable elements (CNET), Jul 2023, Perpignan, France

Communication dans un congrès hal-04158362v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville

Journées du PEPI IBIS 2023, PEPI Ingénierie Bio Informatique et Statistique pour les données haut-débit (IBIS), Sep 2023, Paris, France

Communication dans un congrès hal-04283863v1

How to use REPET for de novo TE annotation

Johann Confais , Mariène Wan , Somia Saidi , Hadi Quesneville

11th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis, Laboratory of Molecular Cytogenetics of the Biology Centre CAS, May 2023, České Budějovice, Czech Republic

Communication dans un congrès hal-04117937v1

REPET novelties : a versatile and modular package

Johann Confais , Mariène Wan , Somia Saidi , Hadi H. Quesneville

CNET 2023 : 24th National Congress on Transposable Elements 2023, French research community working on transposable elements (CNET), Jul 2023, Perpignan, France

Communication dans un congrès hal-04156193v1

REPET evolutions: faster and easier

Johann Confais , Mariène Wan , Hadi Quesneville

23rd National Congress on Transposable Elements (CNET 2022), French research community working on transposable elements (CNET), Jul 2022, Gif-Sur-Yvette, France

Communication dans un congrès hal-03815061v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville

GDR CNRS 3546 Mobil-ET Annual Meeting, Mobil-ET GDR CNRS 3546, Dec 2022, Paris, France

Communication dans un congrès hal-03890780v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville

23rd National Congress on Transposable Elements (CNET 2022), French research community working on transposable elements (CNET), Jul 2022, Gif-Sur-Yvette, France

Communication dans un congrès hal-03819044v1

Transposable elements, from their annotation to their integration into knowledge graphs

Johann Confais , Mariène Wan , Somia Saidi , Nicolas Francillonne , Hadi Quesneville

Journée thématique - Annotation, Intelligence Artificielle et Text-mining, PEPI IBIS, Nov 2022, Jouy-en-Josas, France

Communication dans un congrès hal-03876510v1
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Principles of data governance for research organizations -INRAE's approach

Gilles Aumont , Michaël Chelle , Esther Dzale-Yeumo , Odile Hologne , Olivier Philipe et al.

Data for policy 2020, Sep 2020, Virtuel, France. ⟨10.5281/zenodo.3964002⟩

Communication dans un congrès hal-02955903v1
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Traces of past transposable element presence in <em>Brassicaceae</em> genome dark matter

Hadi Quesneville

ALPHY 2019: Bioinformatics and Evolutionary Genomics, Feb 2019, Paris, France

Communication dans un congrès hal-02734925v1
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Developing infrastructures for FAIR data in plant biology

Cyril Pommier , Guillaume Cornut , Michael Alaux , Windpouire Esther Dzale Yeumo , Raphaël Flores et al.

Gatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany

Communication dans un congrès hal-03316569v1
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Traces of past transposable element presence in <em>Brassicaceae</em> genome dark matter

Hadi Quesneville

Congrès National des Éléments Transposables (CNET 2019), Jul 2019, Lyon, France

Communication dans un congrès hal-02734400v1
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URGI Platform

Hadi Quesneville , Joëlle Amselem

Journées PEPI IBIS, Jun 2019, Paris, France

Communication dans un congrès hal-02734116v1
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Traces of past transposable element presence in <em>Brassicaceae</em> genome dark matter

Hadi Quesneville

Mobile DNA - FASEB Scientific Research Conference, Jun 2019, Palm Spring, United States

Communication dans un congrès hal-02738388v1
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An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury et al.

PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides

Communication dans un congrès hal-01839185v1
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An E-infrastructure model for the plant research communities

Hadi Quesneville

PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States

Communication dans un congrès hal-02734402v1
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Apprendre à lire aux ordinateurs pour améliorer le blé

Hadi Quesneville

JNSO - Journées Nationales de la Science Ouverte, Dec 2018, Paris, France

Communication dans un congrès hal-02734405v1
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Gestion des données de séquençage (GnpIS)

Hadi Quesneville

Colloque FRB: Séminaire de restitution de l’étude sur l’utilisation des données de séquençage de ressources génétiques pour l’agriculture et l’alimentation., Oct 2018, Paris, France

Communication dans un congrès hal-02786496v1

Developing grapevine FAIR Data

Cyril Pommier , Eric Duchêne , Thierry Lacombe , Timothée Flutre , Michael Alaux et al.

PAG Conference 2018, Jan 2018, San Diego, United States

Communication dans un congrès hal-02738117v1

BreedWheat GWAS data in GnpIS information system

Mathilde Lainé , Thomas Letellier , Raphaël Flores , Nacer Mohellibi , Cyril Pommier et al.

Eucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France

Communication dans un congrès hal-02340450v1
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Improving the « FAIRness » of Inra’s data for plant biology and breeding

Michael Alaux , Cyril Pommier , Esther Dzale Yeumo , Sophie Durand , Raphaël Flores et al.

PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides

Communication dans un congrès hal-02790227v1
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Cyril Pommier et al.

PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides

Communication dans un congrès hal-02788401v1

De novo annotation of transposable elements: tackling the fat genome issue

Hadi Quesneville

PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States

Communication dans un congrès hal-02785776v1
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« Big data » & pédictions dans les génomes

Hadi Quesneville

Table ronde « Big data » IHEST, May 2017, Paris, France

Communication dans un congrès hal-02786759v1
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Plant Cyber-infrastructures: wheatIS & French elixir node

Hadi Quesneville

BIOTALENT, May 2017, Poznan, Poland

Communication dans un congrès hal-02786556v1
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA

Sophie Durand , Windpouire Esther Dzale Yeumo , Cyril Pommier , Michael Alaux , Guillaume Cornut et al.

4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides

Communication dans un congrès hal-02791168v1
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WheatIS: a genetics and genomics nformation system for the wheat research community

Hadi Quesneville

RDA: Interest Group Agriculture Data, Apr 2017, Barcelone, Spain

Communication dans un congrès hal-02734123v1
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WheatIS: a genetics and genomics information system for the wheat research community

Hadi Quesneville

Bioinformatics to advance wheat breeding, Nov 2017, Bologne, Italy

Communication dans un congrès hal-02786318v1
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Transposable element annotation in complexe genomes.

Hadi Quesneville

BiLille: Journée annotation des génomes, Mar 2017, Lille, France

Communication dans un congrès hal-02785819v1
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WheatIS: a genetics and genomics information system for the wheat research community

Hadi Quesneville

PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States

Communication dans un congrès hal-02734407v1

The IWGSC Reference genome browser, data mining and beyond

Michael Alaux , Thomas Letellier , Françoise Alfama Depauw , Jane Rogers , Frédéric Choulet et al.

PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States

Communication dans un congrès hal-02788141v1
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De novo annotation of transposable elements: tackling the fat genome issue

Hadi Quesneville

PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States

Communication dans un congrès hal-02734406v1
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Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics

Célia Michotey , Christel Anger , François Ehrenmann , Odile Rogier , Véronique Jorge et al.

IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France

Communication dans un congrès hal-02740283v1
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Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRA

Cyril Pommier , Michael M. Alaux , Windpouire Esther Dzale Yeumo , Guillaume Cornut , Sophie S. Durand et al.

Plant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic

Communication dans un congrès hal-02794139v1
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Exposing French agronomic resources as Linked Open Data

Aravind Venkatesan , Nordine El Hassouni , Florian Phillipe , Cyril Pommier , Hadi Quesneville et al.

IN-OLIVE, Jun 2016, Montpellier, France

Communication dans un congrès hal-01411759v1

Oak genome sequencing and evolution

Jerome J. Salse , Jean Marc Aury , Florent Murat , Sébastien Faye , Karine Labadie et al.

Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p

Communication dans un congrès hal-02741698v1

Annotation of the oak genome sequence and associated bioinformatic resources

Joelle J. Amselem , Jean Marc Aury , Nicolas Francillonne , Tina Alaeitabar , Corinne da Silva et al.

IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p

Communication dans un congrès hal-02741128v1

Sequencing and Analysis of Wheat Chromosome 1B

Frédéric Choulet , Hélène Rimbert , Ambre-Aurore Josselin , Benoît Darrier , Pierre Sourdille et al.

Plant and Animal Genome XXIV Conference; IWGSC Standards and Protocoles Workshop, Jan 2016, San Diego, United States

Communication dans un congrès hal-02306172v1

IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat

Michael Alaux , Thomas Letellier , Françoise Alfama-Depauw , Véronique Jamilloux , Jane Rogers et al.

PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States

Communication dans un congrès hal-01266518v1

Evolution and impact of transposable elements in <em>Brassicaceae species</em>

Hadi Quesneville

Plant Genome Evolution 2015, Elsevier. USA., Sep 2015, Amsterdam, Netherlands

Communication dans un congrès hal-02739778v1

Exposing French agronomic resources as Linked Open Data

Aravind Venkatesan , Nordine El Hassouni , Florian Philippe , Cyril Pommier , Hadi Quesneville et al.

SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2015, Cambridge, United Kingdom

Communication dans un congrès lirmm-01274884v1

De novo annotation with REPET and P-clouds : beyond default parameters

Hadi Quesneville

Analysis and Annotation of DNA Repeats and Dark Matter in Eukaryotic Genomes - Studium conferences, Université François Rabelais (Tours). FRA., Jul 2015, Tours, France

Communication dans un congrès hal-02801139v1
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Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource

Nacer Mohellibi , Nathalie Choisne , Aminah A. Keliet , Daphné Verdelet , Françoise Alfama et al.

23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, United States. pp.24 slides

Communication dans un congrès hal-02741780v1
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Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii

Cyril Pommier , Pawel Krajewski , Thomas Letellier , Hanna Cwiek , Célia Michotey et al.

23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States

Communication dans un congrès hal-02739236v1
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IWGSC sequence repository : how to facilitate pseudomolecule assembly?

Michael M. Alaux , Frédéric Choulet , Loïc Couderc , Françoise F. Alfama-Depauw , Véronique Jamilloux et al.

PAG XXIII - Plant and Animal Genome Conference, Jan 2015, San Diego, United States

Communication dans un congrès hal-02741662v1
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Towards efficient data integration and knowledge management in the Agronomic domain

Aravind Venkatesan , Nordine El Hassouni , Florian Phillipe , Cyril Pommier , Hadi Quesneville et al.

APIA: Applications Pratiques de l'Intelligence Artificielle, Institut National de Recherche en Informatique et en Automatique (INRIA). FRA., Jul 2015, Rennes, France. pp.117-124

Communication dans un congrès hal-01176903v1

Developing methods and tools to annotate and explore genomes through "omics" data analysis and integration

Hadi Quesneville

VIB Meetings, Flanders Institute for Biotechnology (VIB). BEL., Jun 2015, Gand, Belgium

Communication dans un congrès hal-02799228v1
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Assembling a pseudomolecule for a wheat chromosome: the 3B experience

Frédéric Choulet , Adriana A. Alberti , Valérie Barbe , Sébastien Theil , Pierre Sourdille et al.

22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States

Communication dans un congrès hal-02743902v1

IWGSC Sequence repository at URGI: New features and blast tool

Michael Alaux , Françoise Alfama Depauw , Loïc Couderc , Véronique Jamilloux , Claire Guerche et al.

PAG XXII - Plant and Animal Genome, Jan 2014, San Diego, United States

Communication dans un congrès hal-02801480v1
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URGI plant and fungi platform: distributed resources through GMOD tools

Joelle J. Amselem , Michael M. Alaux , Nathalie Choisne , Olivier Inizan , Nicolas Lapalu et al.

Plant and Animal Genome conference XXII, GMOD session, Jan 2014, San Diego, United States

Communication dans un congrès hal-02796293v1
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Plant biology open data interoperability in the big data era

Anne-Francoise Adam-Blondon , Sophie S. Durand , Erik Kimmel , Raphaël-Gauthier R.-G. Flores , Cyril Pommier et al.

Plant Biology Europe EPSO/FEPBS 2014, Jun 2014, Dublin, Germany

Communication dans un congrès hal-02801067v1
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Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3B

Frédéric Choulet , Sébastien Theil , Josquin Daron , Natasha Marie Glover , Nicolas N. Guilhot et al.

IWGSC Wheat Genome Sequencing Strategy and Funding Workshop, International Wheat Genome Sequencing Consortium (IWGSC). USA., Apr 2013, Evry, France

Communication dans un congrès hal-02747374v1

IWGSC Sequence repository : new data and browsers

Michael Alaux , Loïc Couderc , Françoise Alfama Depauw , Véronique Jamilloux , Claire Guerche et al.

12. IWGS (International Wheat Genetics Symposium), Kyoto University [Kyoto] (KU). JPN., Sep 2013, Yokohama, Japan

Communication dans un congrès hal-02806070v1

IWGSC Sequence repository : Blast your favorite gene against the wheat survey sequence

Michael Alaux , Françoise Alfama-Depauw , Véronique Jamilloux , Raphaël Flores , Daphné Verdelet et al.

PAG XXI - Plant and Animal Genome, Jan 2013, San Diego, United States

Communication dans un congrès hal-02804578v1

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Célia Michotey , Frédéric Sapet , Pierre Dubreuil , Jacques Le Gouis , Mathilde Causse et al.

Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France

Communication dans un congrès hal-01268379v1
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Josquin Daron , Natasha Marie Glover , Nicolas N. Guilhot et al.

TGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom

Communication dans un congrès hal-02809032v1
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Analyse bioinformatique des données de métagénomique fongique

Laetitia L. Brigitte , Joelle J. Amselem , Nicolas Lapalu , Angelique A. Gautier , Jessica J. Vallance et al.

9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.23-23

Communication dans un congrès hal-00999906v1
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Towards a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Adriana A. Alberti , Valérie Barbe , Sophie Mangenot et al.

16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, United States

Communication dans un congrès hal-02807639v1
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Fungal species resources: an integrated system for structural and functional genome annotation

Nicolas Lapalu , Joelle J. Amselem , Baptiste B. Brault , Laetitia L. Brigitte , Jonathan J. Kreplak et al.

9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.81-81

Communication dans un congrès hal-00999954v1

Development of genomic resources to study the structure, function and evolution of the oak genome

Christophe Plomion , Joelle J. Amselem , Jean-Marc Aury , Catherine Bodenes , Emilie Chancerel et al.

IUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p

Communication dans un congrès hal-01019850v1

Fungal genome analysis of transposable elements: expansion vs RIP silencing

Joelle J. Amselem , Timothée T. Flutre , Victoria Fabia Dominguez del Angel , Jonathan J. Kreplak , Sébastien Duplessis et al.

Plant and Animal Genome: 19. Conference, Jan 2011, San Diego, United States. n.p

Communication dans un congrès hal-00956370v1
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Botrytis/Sclerotinia resources: an integrated system for structural and functional genome annotation

Joelle J. Amselem , Nicolas Lapalu , Julien J. Brault , Laetitia L. Brigitte , Jonathan J. Kreplak et al.

BSPGW 2011 : Botrytis/Sclerotinia Post-Genome Workshop, Sep 2011, Lyon, France. pp.71

Communication dans un congrès hal-00999928v1
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URGI genome annotation system:an integrated system for structural and functional genome annotation

Joelle J. Amselem , Michael Alaux , Nathalie Choisne , Nicolas Lapalu , Baptiste Brault et al.

12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p

Communication dans un congrès hal-01019754v1
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Report on sequencing the wheat chromosome 3B

Frédéric Choulet , Patrick Wincker , Hadi Quesneville , Dominique D. Brunel , Bikram S. Gill et al.

19. Plant and Animal Genome Conference, Jan 2011, San Diego, Californie, United States. 1 p

Communication dans un congrès hal-02808854v1
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Sequencing and Analyses of the Hexaploid Wheat Chromosome 3B

Frédéric Choulet , P. Wincker , Hadi Quesneville , Dominique D. Brunel , B. Gill et al.

19. Conference on Plant and Animal Genome, Jan 2011, San Diego, CA, United States

Communication dans un congrès hal-02747876v1

Nature, nurture and the structure of macroalgal genomes

J. Mark Cock , Jonas Collen , Lieven Sterck , Pierre Rouzé , Delphine Scornet et al.

5. European Phycological Congress, Sep 2011, Rhodes, Greece

Communication dans un congrès hal-02749757v1

Fungal genome analysis of transposable elements: genomes dynamics vs Repeat-Induced Point mutation (RIP)

Joelle J. Amselem , Jonathan Kreplak , Bruno Le Cam , Marc-Henri Lebrun , Hadi Quesneville

17. Congrès National sur les Eléments Transposables, Jul 2011, Lyon, France. pp.35

Communication dans un congrès hal-01019794v1
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Sequencing and analyses of the hexaploid wheat chromosome 3B

Frédéric Choulet , Etienne Paux , Philippe Leroy , Arnaud Couloux , Michaël Alaux et al.

10. conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom

Communication dans un congrès hal-02753841v1
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Development of resources for comparative physical mapping between Muscadinia rotundifolia and Vitis vinifera

Iritche Zah-Bi , Sophie Blanc , Marc Bras , Aurelie A. Canaguier , Isabelle I. Le Clainche et al.

6. International Workshop of Grapevine Downy and Powdery Mildew. GDPM 2010, Jul 2010, BORDEAUX, France

Communication dans un congrès hal-02754937v1
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Comparative genomics of Botrytis cinerea and related Ascomycota species

Nicolas Lapalu , Joelle J. Amselem , Hadi Quesneville , Marc-Henri M.-H. Lebrun

8. Rencontres de Phytopathologie - Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France

Communication dans un congrès hal-02751266v1

Lepido-DB, a new bioinformatic resource for the annotation and cross-comparisons of lepidopteran genomes.

Fabrice Legeai , Emmanuelle d'Alençon , François Cousserans , Hideki Sezutsu , Emmanuelle Permal et al.

The Eighth International Workshop on MOLECULAR BIOLOGY AND GENETICS OF THE LEPIDOPTERA, Aug 2009, Kolimpari, Greece

Communication dans un congrès inria-00435820v1

GnpAnnot community annotation system: features, qualifiers, values

Stéphanie Sidibe-Bocs , Fabrice Legeai , Gaëtan Droc , Mathieu Rouard , Michael M. Alaux et al.

3. International Biocuration Conference, Apr 2009, Berlin, Germany

Communication dans un congrès hal-02758372v1

REPET v4.0: A robust and accessible tool for TE annotation

Etienne Bardet , Mariène Wan , Johann Confais , Hadi Quesneville

JOBIM 2025, Jul 2025, Bordeaux, France

Poster de conférence hal-05162223v1
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RepetDB: A TE database

Nicolas Francillonne , Mariène Wan , Nathalie Choisne , Françoise Alfama , Raphaël Flores et al.

International congress on transposable elements ICTE, Apr 2024, Saint Malo, France

Poster de conférence hal-04570060v1

panREPET: A Pipeline to characterize Transposable Elements in Pangenomes on de novo assembled genomes

Somia Saidi , Johann Confais , Hadi Quesneville

International Plant & Animal Genome (PAG 31), Jan 2024, San Diego (CA), United States

Poster de conférence hal-04516410v1

New REPET improvements: REPET V4.0, making life easier

Johann Confais , Mariène Wan , Etienne Bardet , Hadi Quesneville

International Congress on Transposable Elements, Apr 2024, Saint-malo, France.

Poster de conférence hal-05009167v1

REPET evolutions: faster and easier

Johann Confais , Mariène Wan , Hadi Quesneville

Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jul 2023, Ferrara, Italy.

Poster de conférence hal-04169996v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville

JOBIM 2023, Jun 2023, Tours, France

Poster de conférence hal-04158902v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville

SMBE23, Jul 2023, Ferrara, Italy

Poster de conférence hal-04516434v1

REPET evolutions: faster and easier

Mariène WAN , Johann Confais , Hadi Quesneville

Jobim 2022, Jul 2022, Rennes, France.

Poster de conférence hal-03819511v1

REPET evolutions: faster and easier

Johann Confais , Mariène Wan , Hadi Quesneville

6th Uppsala Transposon Symposium, Oct 2022, Uppsala, Sweden.

Poster de conférence hal-03838081v1
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TE Hub: a community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation

Tyler A. Elliott , Tony Heitkam , Robert Hubley , Hadi Quesneville , Alexander Suh et al.

The Mobile DNA Conference: Evolution, Diversity, and Impact, Jun 2021, Virtuel, France. 2021

Poster de conférence hal-03357402v1
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA

Sophie Durand , Esther Dzale Yeumo , Cyril Pommier , Michaël Alaux , Guillaume Cornut et al.

Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. , 2017, EUCARPIA Genetic Resources 2017

Poster de conférence hal-01606277v1

The complete apple genome : Evolutionary events revealed.

Nicolas Daccord , Jean-Marc Celton , G. Linsmith , C. Becker , Nathalie Choisne et al.

XXV Plant and Animal Genome Conference., Jan 2017, San Diego, United States. 2017

Poster de conférence hal-03106053v1

The complete apple genome

Nicolas Daccord , Jean-Marc Celton , E. Schiilen , Henri van de Geest , C. Becker et al.

Journées Ouvertes Biologie Informatique et Mathématiques (JOBIM’2016)., Jun 2016, Lyon, France. 2016

Poster de conférence hal-03106007v1
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Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics

Célia Michotey , Christel Anger , François Ehrenmann , Odile Rogier , Véronique Jorge et al.

35. New Phytologist Symposium, Jun 2015, Boston, United States. 2015

Poster de conférence hal-02795537v1
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A computational architecture designed for genome annotation: oak genome sequencing project as a use case

Nicolas Francillonne , Tina Alaeitabar , Françoise Alfama-Depauw , Loïc Couderc , Claire Guerche et al.

JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015

Poster de conférence hal-01246649v1
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Benchmarks for transcript assembly and differential gene expression (new isoforms) analysis in the context of transposable elements

Tina Alaeitabar , Nicolas Francillonne , Mikaël Loaec , Hadi Quesneville , Joelle J. Amselem

Assemblée Générale France Génomique 2015, Nov 2015, Paris, France. 2015

Poster de conférence hal-01243323v1

Data integration in the agronomic domain : national and international data discovery system

Florian Philippe , Aravind Venkatesan , Nordine El Hassouni , Cyril Pommier , Manuel Ruiz et al.

JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , Post-105 (#59), 2015

Poster de conférence lirmm-01274725v1
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BreedWheat genotyping and phenotyping data in GnpIS information system

Marie Laine , Thomas Letellier , Raphaël-Gauthier R.-G. Flores , Loïc Couderc , Nacer Mohellibi et al.

JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015

Poster de conférence hal-02801654v1

Whole genome comparative analysis of transposable elements provide new insights on silencing mechanisms in fungal genomes

Joelle J. Amselem , Marc-Henri M.-H. Lebrun , Hadi Quesneville

Mobile Genetic Elements & Genome Evolution symposium, Mar 2014, Santa Fe New mexico, United States. , 2014

Poster de conférence hal-02797247v1

Nucleotide variation at the Vitis chloroplast genome based on high-throughput sequencing and SNP genotyping

R. Torres-Perez , Marie-Christine Le Paslier , Nathalie Choisne , Roberto Bacilieri , J. Ibanez et al.

11. International Conference on Grapevine Breeding and Genetics, Jul 2014, Beijing, China. 2014

Poster de conférence hal-02796195v1
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The GrapeReSeq 18k Vitis genotyping chip

Marie-Christine Le Paslier , Nathalie Choisne , Simone Scalabrin , Roberto Bacilieri , Aurélie A. Berard et al.

IX International Symposium on Grapevine Physiology&Biotechnology, Apr 2013, La Serena, Chile. 2013

Poster de conférence hal-02811055v1

Wheat Crop Ontology: A Species Specific Trait Ontology. Use Case: The URGI Information System

Cyril Pommier , Michael M. Alaux , Erik Kimmel , Delphine Steinbach , Elizabeth Arnaud et al.

Plant and Animal Genome, Jan 2013, San Diego, United States. 2013

Poster de conférence hal-02810186v1
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Analysis of fungal communities associated with grapevine wood diseases, based on fungal ITS pyrosequencing.

Nicolas Lapalu , Angelique Gautier , Laetitia Brigitte , Jessica Vallance , Emilie Bruez et al.

27th Fungal Genetics Conference - Asilomar Conference Grounds,, Mar 2013, Asilomar, United States. 2013

Poster de conférence hal-01190538v1

GnpSeq NGS: a new tool to manage NGS data in URGI's information system (GnpIS)

Célia Michotey , Nacer Mohellibi , Hadi Quesneville , Delphine Steinbach

JOBIM 2012 : Journées Ouvertes en Biologie, Informatique et Mathématiques, 2012, 2012

Poster de conférence hal-02807359v1
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Use cases and improvements of REPET package : pipeline and tools to identify and annotate TEs in genomic sequences

Véronique Jamilloux , Olivier Inizan , Sandie Arnoux , Timothée Flutre , Claire Hoede et al.

17. Congrès National des Elements Transposables, Jul 2011, Lyon, France. 2011

Poster de conférence hal-01190364v1
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Mining plant genomic and genetic data using the GnpIS information system

Anne-Francoise Adam-Blondon , Michael Alaux , Sophie Durand , Thomas Letellier , Guillaume Merceron et al.

Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩

Chapitre d'ouvrage hal-03206731v1

Roadmap for annotating transposable elements in eukaryote genomes

Emmanuelle E. Permal , Timothée T. Flutre , Hadi H. Quesneville

Mobile Genetic Elements, 859 (2 ed.), Springer Science + Business Media LLC, 308 p., 2012, Methods in molecular biology (Clifton, N.J.), 978-1-61779-602-9. ⟨10.1007/978-1-61779-603-6_3⟩

Chapitre d'ouvrage hal-00956367v1

Transposable element annotation in completely sequenced eukaryote genomes

Timothée T. Flutre , Emmanuelle E. Permal , Hadi H. Quesneville

Plant Transposable Elements, 24, Springer-Verlag, 330 p., 2012, Topics in Current Genetics, 978-3-642-31841-2. ⟨10.1007/978-3-642-31842-9_2⟩

Chapitre d'ouvrage hal-00956368v1
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Towards the construction of an integrated Wheat Information System

Mario Caccamo , Hadi Quesneville

[0] Wheat Initiative - International Research Initiative for Wheat Improvement. 2012, 12 p

Rapport (rapport d’expertise collective) hal-01601834v1
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Eléments transposables et génomes eucaryotes

Hadi Quesneville

Bio-Informatique, Biologie Systémique [q-bio.QM]. université Pierre et Marie Curie, 2004

HDR tel-02962775v1