Harold Duruflé
50
Documents
Current affiliations
- 1007171
Researcher identifiers
- harold-durufle
- 0000-0002-6020-2822
- IdRef : 233622861
Presentation
RESEARCH EXPERIENCE
===================
2021
**Research Scientist: Integrative genomic prediction of complex phenotypes using system biology approach**
**-** Integrated Biology for the Development of Tree and Forest Diversity Laboratory, UMR INRAE/ONF 0588
2017
**PostDoc position: Develop the systems biology approach within the [SUNRISE project](https://www6.inrae.fr/sunrise/What-is-SUNRISE) ; 3 years**
\- Laboratory of Plant-Microbe Interactions, UMR 2594/441 CNRS/INRA, Toulouse, France
\- Team: Sunflower Genetics and Genomics (N. Langlade)
2014
**PhD: “Production and treatment of heterogeneous Omics data in order to study the cell wall plasticity in *A. thaliana* ecotypes living at contrasted altitudinal level”; 3 years**
\- Plant Science Research Laboratory, UMR 5546 UPS/CNRS, Toulouse, France (Pr C. Dunand)
\- Toulouse Mathematics Institute, France (Pr P. Besse)
2014
**Crop ontology curator. Bioversity International, Montpellier Office (France); 10 months**
Team: Crop Ontology project of the Generation Challenge Programme (E. Arnaud)
Internship:
2013
**Station Biologique de Roscoff, Marine Plants and Biomolecules, UMR 7139 UPMC/CNRS; 6 months**
2012
**Laboratory “Ecosystems, Biodiversity, Evolution”, UMR 6553 Rennes 1 University/CNRS; 3 months**
2011
**Laboratory of Plants Ecophysiological Responses to Environmental Stress, INRA Montpellier; 6 months**
2010
**Laboratory “Ecology Systematic Evolution”, Paris-Sud 11 University; 4 months**
Team: Photosynthesis, environment and adaptation (P. Streb & G. Cornic)
2004-2011
**Joseph Fourier Alpine Station, Alpine Botanical garden of Lautaret; Internship 2 months / year**
EDUCATION
==========
2013
**M.Sc. Degree: Integrative plant biology: Gene, Plant, Agro-system**
6 collaborating universities & Agrocampus Ouest (France)
*Major: Physiology/Metabolism and Eco-Physiology.*
2011
**BSc Degree: Functional Plant Biology**
Montpellier 2 University (France)
TEACHING and MENTORING
======================
**Supervision:**
PhD:
**2021-2022** - Abdou Rahmane Wade. Improved genome-based phenotypic predictions with a systems biology approach. (Co-doctoral advisor: Leopoldo Sanchez Rodriguez & Vincent Segura)
**2022-on going** - Alexandre Duplan. Improvement of pan-genomic knowledge and prediction of complex phenotypes by an integrative multi-omics approach. (Co-doctoral advisor: Leopoldo Sanchez Rodriguez & Stephane Maury)
PostDoc:
**2022** - Xabi Cazenave : Postdoc: 11 months
Internship:
**2023** - Alae-Eddine LEKCHIRI, Master degree, Rennes University
**2023** - Maya Doureradjam. Master degree, Montpellier University (France): 6 months
**2022** - Julien Desforges. Master degree, Orleans University (France): 4 months
**2018** - Claire Espérou. 4th year in mathematics and modelling engineering school of INSA, Toulouse (France): 3 months
**2017** - Sébastien Viudes. Master degree, Toulouse University (France): 2 months
**2016** - Merwann Selmani. 4th year in mathematics and modelling engineering school of INSA, Toulouse (France): 3 months
**2015** - Duchesse Lacour Mbadinga Mbadinga. BSc. Degree, Toulouse University (France): 6 months
Others:
**2019** - Caroline Laffray. Engineer: 1 year
**2018** - Charlotte Penouilh-Suzette. Engineer: 6 months
**Teaching:**
**2015 - 2017**: Toulouse University, biostatistics and biophysics at BSc. Degree, 70 h per year.
PROFESSIONAL SERVICES
=====================
International meeting organization committees of:
\- The [IX European Plant Science Retreat](http://epsr.net/), 20 - 23 June **2017**, Toulouse (France)
\- The [Workshop on Multivariate data integration using the R package mixOmics](http://mixomics.org/2016/05/12-14-sept-toulouse/), 12 - 14 September **2016**, Toulouse (France)
\- The [Workshop on Crop Ontology and Phenotyping Data Interoperability](https://sites.google.com/a/cgxchange.org/cropontologycommunity/), 31 March - 4 April **2014**, Montpellier (France)
RESEARCH EXPERIENCE
===================
2021
**Research Scientist: Integrative genomic prediction of complex phenotypes using system biology approach**
**-** Integrated Biology for the Development of Tree and Forest Diversity Laboratory, UMR INRAE/ONF 0588
2017
**PostDoc position: Develop the systems biology approach within the [SUNRISE project](https://www6.inrae.fr/sunrise/What-is-SUNRISE) ; 3 years**
\- Laboratory of Plant-Microbe Interactions, UMR 2594/441 CNRS/INRA, Toulouse, France
\- Team: Sunflower Genetics and Genomics (N. Langlade)
2014
**PhD: “Production and treatment of heterogeneous Omics data in order to study the cell wall plasticity in *A. thaliana* ecotypes living at contrasted altitudinal level”; 3 years**
\- Plant Science Research Laboratory, UMR 5546 UPS/CNRS, Toulouse, France (Pr C. Dunand)
\- Toulouse Mathematics Institute, France (Pr P. Besse)
2014
**Crop ontology curator. Bioversity International, Montpellier Office (France); 10 months**
Team: Crop Ontology project of the Generation Challenge Programme (E. Arnaud)
Internship:
2013
**Station Biologique de Roscoff, Marine Plants and Biomolecules, UMR 7139 UPMC/CNRS; 6 months**
2012
**Laboratory “Ecosystems, Biodiversity, Evolution”, UMR 6553 Rennes 1 University/CNRS; 3 months**
2011
**Laboratory of Plants Ecophysiological Responses to Environmental Stress, INRA Montpellier; 6 months**
2010
**Laboratory “Ecology Systematic Evolution”, Paris-Sud 11 University; 4 months**
Team: Photosynthesis, environment and adaptation (P. Streb & G. Cornic)
2004-2011
**Joseph Fourier Alpine Station, Alpine Botanical garden of Lautaret; Internship 2 months / year**
EDUCATION
==========
2013
**M.Sc. Degree: Integrative plant biology: Gene, Plant, Agro-system**
6 collaborating universities & Agrocampus Ouest (France)
*Major: Physiology/Metabolism and Eco-Physiology.*
2011
**BSc Degree: Functional Plant Biology**
Montpellier 2 University (France)
TEACHING and MENTORING
======================
**Supervision:**
PhD:
**2021-2022** - Abdou Rahmane Wade. Improved genome-based phenotypic predictions with a systems biology approach. (Co-doctoral advisor: Leopoldo Sanchez Rodriguez & Vincent Segura)
**2022-on going** - Alexandre Duplan. Improvement of pan-genomic knowledge and prediction of complex phenotypes by an integrative multi-omics approach. (Co-doctoral advisor: Leopoldo Sanchez Rodriguez & Stephane Maury)
PostDoc:
**2022** - Xabi Cazenave : Postdoc: 11 months
Internship:
**2023** - Alae-Eddine LEKCHIRI, Master degree, Rennes University
**2023** - Maya Doureradjam. Master degree, Montpellier University (France): 6 months
**2022** - Julien Desforges. Master degree, Orleans University (France): 4 months
**2018** - Claire Espérou. 4th year in mathematics and modelling engineering school of INSA, Toulouse (France): 3 months
**2017** - Sébastien Viudes. Master degree, Toulouse University (France): 2 months
**2016** - Merwann Selmani. 4th year in mathematics and modelling engineering school of INSA, Toulouse (France): 3 months
**2015** - Duchesse Lacour Mbadinga Mbadinga. BSc. Degree, Toulouse University (France): 6 months
Others:
**2019** - Caroline Laffray. Engineer: 1 year
**2018** - Charlotte Penouilh-Suzette. Engineer: 6 months
**Teaching:**
**2015 - 2017**: Toulouse University, biostatistics and biophysics at BSc. Degree, 70 h per year.
PROFESSIONAL SERVICES
=====================
International meeting organization committees of:
\- The [IX European Plant Science Retreat](http://epsr.net/), 20 - 23 June **2017**, Toulouse (France)
\- The [Workshop on Multivariate data integration using the R package mixOmics](http://mixomics.org/2016/05/12-14-sept-toulouse/), 12 - 14 September **2016**, Toulouse (France)
\- The [Workshop on Crop Ontology and Phenotyping Data Interoperability](https://sites.google.com/a/cgxchange.org/cropontologycommunity/), 31 March - 4 April **2014**, Montpellier (France)
Publications
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Multi-omics Data Integration in the Context of Plant Abiotic Stress SignalingPlant Abiotic Stress Signaling, 2642, Springer US, pp.295-318, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-3044-0_16⟩
Book sections
hal-04040408v1
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Epigenetic Variation in Tree Evolution: a case study in black poplar (Populus nigra)2023
Preprints, Working Papers, ...
hal-04170410v1
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eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction2022
Preprints, Working Papers, ...
hal-03509327v1
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Proteomic data from leaves of twenty-four sunflower genotypes under water deficit2020
Preprints, Working Papers, ...
hal-02544815v1
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Production et traitement de données omiques hétérogènes en vue de l'étude de la plasticité de la paroi chez des écotypes de la plante modèle Arabidopsis thaliana provenant d'altitudes contrastéesBiologie végétale. Université Paul Sabatier - Toulouse III, 2017. Français. ⟨NNT : 2017TOU30219⟩
Theses
tel-02004363v1
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