Isabelle Domaizon

212

Documents

Publications

	Coupler les données satellitaires aux données de terrain pour comprendre les dynamiques des socio-hydrosystèmes à différents niveaux d'organisation Mathis Messager , Isabelle Domaizon , Alain Dupuy , Agathe Euzen , Gwenaël Imfeld et al. 2026 Autre publication scientifique hal-05457388v1
	Prospective des effets du changement climatique sur le lac d’Annecy Tendances et défis à venir concernant les services rendus Laura M V Soares , Olivia Desgué-Itier , Victor Frossard , Cécilia Barouillet , Yoann Baulaz et al. 2024 Autre publication scientifique hal-04990796v1
	eDNA extraction from water samples filtered through Sterivex filter units (NucleoMag DNA/RNA Water Kit - MACHEREY NAGEL). v1 Marine Vautier , Cécile Chardon , Cyrielle Galiegue , Isabelle Domaizon 2024, ⟨10.17504/protocols.io.ewov1qpkpgr2/v1⟩ Autre publication scientifique hal-04888310v1
	One step RT-ddPCR for probes to target eRNA samples : from sample preparation to droplet reading v1 Marine Vautier , Cécile Chardon , Cyrielle Galiegue , Isabelle Domaizon 2024, ⟨10.17504/protocols.io.kxygx3j1zg8j/v1⟩ Autre publication scientifique hal-04888258v1
	Modélisation de la dynamique écologique long-terme des lacs profonds périalpins soumis aux changements climatiques et à des apports en nutriments Jean-Philippe Jenny , Najwa Sharaf , Rosalie Bruel , Laura M V Soares , Olivia Desgué-Itier et al. 2024 Autre publication scientifique hal-04990809v1
	ddPCR for probes to target eDNA samples : from sample preparation to droplet reading v1 Marine Vautier , Cécile Chardon , Cyrielle Galiegue , Isabelle Domaizon 2024, ⟨10.17504/protocols.io.n92ldm479l5b/v1⟩ Autre publication scientifique hal-04888317v1
	Plankton DNA extraction from Sterivex filter units Marine Vautier , Cécile Chardon , Camilla Capelli , Rainer Kurmayer , Nico Salmaso et al. 2021, ⟨10.17504/protocols.io.bvgzn3x6⟩ Autre publication scientifique hal-03405852v1
	In situ pelagic dataset from continuous monitoring: a mesocosm experiment in Lake Geneva (MESOLAC) Viet Tran Khac , Philippe Quétin , Isabelle Domaizon , Stéphan Jacquet , Laurent Espinat et al. 2019, ⟨10.15454/T3VCB0⟩ Autre publication scientifique hal-02947529v1

	Long-term trends in aquatic communities of mesotrophic lakes along a land-use gradient in eastern Canada Leighton King , Paul W Mackeigan , Rebecca E Garner , Madeleine E Aucoin , Beatrix E Beisner et al. Anthropocene, 2026, 53, pp.100507. ⟨10.1016/j.ancene.2025.100507⟩ Article dans une revue hal-05552160v1
	Environmental DNA (eDNA) sampling strategies influence estimates of lake fish eDNA concentrations Marine Vautier , Jonas Bylemans , Jean-Marc Baudoin , Jean Guillard , Chloé Goulon et al. Knowledge and Management of Aquatic Ecosystems, 2026, 427, pp.9. ⟨10.1051/kmae/2026004⟩ Article dans une revue hal-05646484v1
	Advancing Environmental DNA Methods for Monitoring the Reproduction of Quagga and Zebra Mussels in Lakes Marine Vautier , Isabelle Domaizon Aquaculture, Fish and Fisheries, 2026, 6 (3), ⟨10.1002/aff2.70252⟩ Article dans une revue hal-05649762v1
	Analyse du phytoplancton par l’ADN environnemental : nouveaux outils pour évaluer la qualité écologique des plans d’eau Clélia Duran , Benjamin Alric , Christophe Laplace-Treyture , Isabelle Domaizon , Laurine Viollaz et al. Sciences Eaux & Territoires, 2026, 51, pp.9926. ⟨10.20870/Revue-SET.2026.51.9926⟩ Article dans une revue hal-05675691v1
	Omics to Study and Manage Aquatic Environments: A Snapshot From the AquaEcO mics Meeting (Evian‐les‐Bains, 2025) Frédéric Rimet , Clarisse Lemonnier , Benjamin Alric , Pedro Beja , Lucie Bittner et al. Molecular Ecology, 2025, 34 (17), pp.e70041. ⟨10.1111/mec.70041⟩ Article dans une revue hal-05273477v1
	Unraveling Lake Geneva's hypoxia crisis in the Anthropocene Laura M V Soares , Olivia Desgué-Itier , Cécilia Barouillet , Céline Casenave , Isabelle Domaizon et al. Limnology and Oceanography Letters, 2025, 10 (1), pp.113-121. ⟨10.1002/lol2.10435⟩ Article dans une revue hal-04727996v1
	Multifaceted biodiversity changes of lake microeukaryote communities in response to nutrient enrichment and climate change Cécilia Barouillet , Eric Capo , Didier Debroas , Jean‐philippe Jenny , Pierre Sabatier et al. Oikos, 2025, ⟨10.1002/oik.11616⟩ Article dans une revue hal-05508636v1
	The effect of seismic air gun shots on physiology and behaviour of fish lake communities Emilie Réalis-Doyelle , Chloé Goulon , Franck Cattanéo , Lucia Di Iorio , Isabelle Domaizon et al. Scientific Reports, 2025, 15 (1), pp.14648. ⟨10.1038/s41598-025-98760-z⟩ Article dans une revue hal-05063461v1
	Increasing carbon burial over recent decades despite re-oligotrophication in deep peri-alpine Lake Aiguebelette, France Jean-Philippe Jenny , Cécilia Barouillet , Isabelle Domaizon , David Etienne , Irene Gregory-Eaves et al. Journal of Paleolimnology, 2025, 73 (4), pp.257-276. ⟨10.1007/s10933-025-00358-y⟩ Article dans une revue hal-05328331v1
	An annotated reference library for supporting DNA metabarcoding analysis of aquatic macroinvertebrates in French freshwater environments Paula Gauvin , David Eme , Isabelle Domaizon , Frédéric Rimet Metabarcoding and Metagenomics, 2025, 9, pp.149-173. ⟨10.3897/mbmg.9.137772⟩ Article dans une revue hal-05056371v1
	Seasonal variations in planktonic food web structure affect stability by shifting the distribution of energy fluxes Simon Bazin , Isabelle Domaizon , Cécilia Barouillet , Victor Frossard , Arnaud Sentis Oikos, 2025, ⟨10.1002/oik.11528⟩ Article dans une revue hal-05508607v1
	Comparison of Metabarcoding and Shotgun Sequencing Confirms the Relevance of Chloroplastic rRNA Genes to Assess Community Structure of Lake Phytoplankton Clarisse Lemonnier , Benjamin Alric , Isabelle Domaizon , Frédéric Rimet Molecular Ecology Resources, 2025, 26 (1), ⟨10.1111/1755-0998.70077⟩ Article dans une revue hal-05405201v1
	Environmental Matrices Need Consideration: Insights From Water and Biofilm Environmental DNA for Multi‐Taxonomic Biomonitoring Paula Gauvin , Isabelle Domaizon , Agnes Bouchez , Frédéric Rimet Environmental DNA, 2025, 7 (2), pp.e70079. ⟨10.1002/edn3.70079⟩ Article dans une revue hal-05150275v1
	Expanding the European water Framework Directive indicators to address long-term climate change impacts on lakes using mechanistic lake models L.M.V. Soares , M. Thouillot , Victor Frossard , O. Desgué-Itier , C. Barouillet et al. Ecological Indicators, 2025, 172, pp.113220. ⟨10.1016/j.ecolind.2025.113220⟩ Article dans une revue hal-04979664v1
	Laying Down the Foundations for Qualitative and Quantitative Freshwater Zooplankton Metabarcoding Surveys Jonas Bylemans , Didier Azam , Anne‐laure Besnard , Simon Blanchet , Cecile Chardon et al. Environmental DNA, 2025, 7 (6), ⟨10.1002/edn3.70219⟩ Article dans une revue hal-05428613v1
	Biodiversity patterns of cyanobacterial oligotypes in lakes and rivers: results of a large-scale metabarcoding survey in the Alpine region Nico Salmaso , Serena Bernabei , Adriano Boscaini , Camilla Capelli , Leonardo Cerasino et al. Hydrobiologia, 2024, 851 (4), pp.1789-1805. ⟨10.1007/s10750-023-05423-z⟩ Article dans une revue hal-04523438v1
	DEEP-C Consortium: Carbon sink or methane source – local to global scale assessment of lentic waters’ role in the climate system Jean-Philippe Jenny , Laurent Millet , Ronny Lauerwald , Fanny Colas , Hélène Masclaux et al. Research Ideas and Outcomes, 2024, 10, pp.e136661. ⟨10.3897/rio.10.e136661⟩ Article dans une revue hal-04746441v1
	Assessing the relevance of DNA metabarcoding compared to morphological identification for lake phytoplankton monitoring Maria Mercedes Nicolosi Gelis , Alexis Canino , Agnès Bouchez , Isabelle Domaizon , Christophe Laplace-Treyture et al. Science of the Total Environment, 2024, 914, pp.169774. ⟨10.1016/j.scitotenv.2023.169774⟩ Article dans une revue hal-04523485v1
	Past and future climate change effects on the thermal regime and oxygen solubility of four peri-alpine lakes Olivia Desgué-Itier , Laura Melo Vieira Soares , Orlane Anneville , Damien Bouffard , Vincent Chanudet et al. Hydrology and Earth System Sciences, 2023, 27 (3), pp.837-859. ⟨10.5194/hess-27-837-2023⟩ Article dans une revue hal-04179072v1
	A quantitative eDNA-based approach to monitor fish spawning in lakes: Application to European perch and whitefish Marine Vautier , Cécile Chardon , Jean Guillard , Isabelle Domaizon , Chloé Goulon Fisheries Research, 2023, 264, pp.106708. ⟨10.1016/j.fishres.2023.106708⟩ Article dans une revue hal-04247589v1
	Investigating the effects of anthropogenic stressors on lake biota using sedimentary DNA Cécilia Barouillet , Marie‐eve Monchamp , Stefan Bertilsson , Katie Brasell , Isabelle Domaizon et al. Freshwater Biology, 2023, 68 (11), pp.1799-1817. ⟨10.1111/fwb.14027⟩ Article dans une revue hal-03909423v1
	Physico-chemical and high frequency monitoring dataset from mesocosm experiments simulating extreme climate events in lakes Viet Tran-Khac , Philippe Quetin , Laurent Espinat , Laura Crépin , Charlotte Cousin et al. Data in Brief, 2023, 49, pp.109302. ⟨10.1016/j.dib.2023.109302⟩ Article dans une revue (data paper) hal-04183185v1
	Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities Alexis Canino , Clarisse Lemonnier , Benjamin Alric , Agnes Bouchez , Isabelle Domaizon et al. International Journal of Limnology, 2023, 59, pp.8. ⟨10.1051/limn/2023008⟩ Article dans une revue hal-04210529v1
	Do temperature and population size structure influence the quantity of fish eDNA in water? Alix Hervé , Isabelle Domaizon , Jean-Marc Baudoin , Tony Dejean , Pierre Gibert et al. Frontiers in Environmental Science, 2023, 11, pp.1193393. ⟨10.3389/fenvs.2023.1193393⟩ Article dans une revue hal-04177222v1
	DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region Nico Salmaso , Valentin Vasselon , Frédéric Rimet , Marine Vautier , Tina Elersek et al. Science of the Total Environment, 2022, 834, pp.155175. ⟨10.1016/j.scitotenv.2022.155175⟩ Article dans une revue hal-04032847v1
	Alpine freshwater fish biodiversity assessment: an inter-calibration test for metabarcoding method set up Giulia Riccioni , Isabelle Domaizon , Andrea Gandolfi , Massimo Pindo , Adriano Boscaini et al. Advances in Oceanography and Limnology, 2022, 13 (1), ⟨10.4081/aiol.2022.10017⟩ Article dans une revue hal-04698495v1
	Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes Alix Hervé , Isabelle Domaizon , Jean-Marc Baudoin , Tony Dejean , Pierre Gibert et al. PLoS ONE, 2022, 17 (8), pp.e0272660. ⟨10.1371/journal.pone.0272660⟩ Article dans une revue hal-03752734v1
	Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes Cécilia Barouillet , Valentin Vasselon , François Keck , Laurent Millet , David Etienne et al. Scientific Reports, 2022, 12, ⟨10.1038/s41598-022-12041-7⟩ Article dans une revue hal-03667008v1
	Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential Eric Capo , Marie‐eve Monchamp , Marco J.L. Coolen , Isabelle Domaizon , Linda Armbrecht et al. Environmental Microbiology, 2022, 24 (5), pp.2201-2209. ⟨10.1111/1462-2920.15913⟩ Article dans une revue hal-03559830v1
	Past and future climate change effects on thermal regime and oxygen solubility of four peri-alpine lakes Olivia Desgué-Itier , Laura Melo Vieira Soares , Orlane Anneville , Damien Bouffard , Vincent Chanudet et al. EGUsphere, 2022, 71, pp.101764. ⟨10.5194/egusphere-2022-260⟩ Article dans une revue hal-03960925v1
	Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments Emilie Lyautey , Elodie Billard , Nathalie Tissot , Stéphan Jacquet , Isabelle Domaizon Microbial ecology, 2021, 82 (3), pp.559 - 571. ⟨10.1007/s00248-021-01689-9⟩ Article dans une revue hal-03770085v1
	Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations Alexis Canino , Agnes Bouchez , Christophe Laplace-Treyture , Isabelle Domaizon , Frédéric Rimet Metabarcoding and Metagenomics, 2021, 5, pp.199-205. ⟨10.3897/mbmg.5.74096⟩ Article dans une revue hal-03484541v1
	Rapid responses of pristine marine planktonic communities in experimental approach to diuron and naphthalene (Juan de Nova Island, Western Indian Ocean) Marc Bouvy , Christine Dupuy , Patrice Got , Isabelle Domaizon , Claire Carré et al. Marine and Freshwater Research, 2021, 72 (7), pp.1065-1085. ⟨10.1071/MF20276⟩ Article dans une revue hal-03204173v1
	Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene Eric Capo , Sofia Ninnes , Isabelle Domaizon , Stefan Bertilsson , Christian Bigler et al. Microorganisms, 2021, 9 (2), pp.355. ⟨10.3390/microorganisms9020355⟩ Article dans une revue hal-03148560v1
	Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects Sinziana Rivera , Frédéric Rimet , Valentin Vasselon , Marine Vautier , Isabelle Domaizon et al. Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13568⟩ Article dans une revue hal-03510613v1
	Physico-chemical dataset from an in situ mesocosm experiment simulating extreme climate events in Lake Geneva (MESOLAC) Viet Tran-Khac , Pascal Perney , Laura Crépin , Philippe Quetin , Isabelle Domaizon et al. Data in Brief, 2021, 36, pp.107150. ⟨10.1016/j.dib.2021.107150⟩ Article dans une revue (data paper) hal-03228202v1
	PaleoEcoGen: Unlocking the power of ancient environmental DNA to understand past ecological trends Marie-Eve Monchamp , L. Armbrecht , E. Capo , M.J.L. Coolen , T. Cordier et al. Past Global Changes Magazine, 2021, 29 (2), pp.102. ⟨10.22498/pages.29.2.102⟩ Article dans une revue hal-03452758v1
	Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems David Singer , Christophe V W Seppey , Guillaume Lentendu , Micah Dunthorn , David Bass et al. Environment International, 2021, 146, pp.106262. ⟨10.1016/j.envint.2020.106262⟩ Article dans une revue hal-03028115v1
	Short-term dynamics of $Bdellovibrio$ and like organisms in Lake Geneva in response to a simulated climatic extreme event J. Ezzedine , A. Janicot , Serena Rasconi , Isabelle Domaizon , Stéphan Jacquet Microbial ecology, 2021, 84, pp.717-729. ⟨10.1007/s00248-021-01875-9⟩ Article dans une revue hal-03419786v1
	Evaluating the congruence between DNA ‐based and morphological taxonomic approaches in water and sediment trap samples: Analyses of a 36‐month time series from a temperate monomictic lake Joanna Gauthier , David Walsh , Daniel Selbie , Alyssa Bourgeois , Katherine Griffiths et al. Limnology and Oceanography, 2021, ⟨10.1002/lno.11856⟩ Article dans une revue hal-03297453v1
	Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations Eric Capo , Charline Giguet-Covex , Alexandra Rouillard , Kevin Nota , Peter Heintzman et al. Quaternary, 2021, 4 (1), pp.6. ⟨10.3390/quat4010006⟩ Article dans une revue hal-03218984v1
	Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA François Keck , Laurent Millet , Didier Debroas , David Etienne , Didier Galop et al. Nature Communications, 2020, 11, 8 p. ⟨10.1038/s41467-020-17682-8⟩ Article dans une revue hal-02910139v1
	Scientists’ Warning to Humanity: Rapid degradation of the world’s large lakes Jean-Philippe Jenny , Orlane Anneville , Fabien Arnaud , Yoann Baulaz , Damien Bouffard et al. Journal of Great Lakes Research, 2020, 46 (4), pp.686-702. ⟨10.1016/j.jglr.2020.05.006⟩ Article dans une revue hal-03025852v1
	In situ pelagic dataset from continuous monitoring: A mesocosm experiment in Lake Geneva (MESOLAC) Viet Tran-Khac , Philippe Quetin , Isabelle Domaizon , Stéphan Jacquet , Laurent Espinat et al. Data in Brief, 2020, 32, pp.106255. ⟨10.1016/j.dib.2020.106255⟩ Article dans une revue (data paper) hal-03002705v1
	The Observatory on LAkes (OLA) database: Sixty years of environmental data accessible to the public Frédéric Rimet , Orlane Anneville , Denis Barbet , Cécile Chardon , Laura Crepin et al. Journal of Limnology, 2020, 79 (2), pp.164-178. ⟨10.4081/jlimnol.2020.1944⟩ Article dans une revue hal-02916312v1
	Diversity, spatial distribution and activity of fungi in freshwater ecosystems Cécile Lepère , Isabelle Domaizon , Jean-François Humbert , Ludwig Jardillier , Mylène Hugoni et al. PeerJ, 2019, 7, pp.e6247. ⟨10.7717/peerj.6247⟩ Article dans une revue hal-02058841v1
	Macrophytes moderate the taxonomic and functional composition of phytoplankton assemblages during a nutrient loading experiment Jennifer L. Barrow , Beatrix E. Beisner , Rachel Giles , Alessandra Giani , Isabelle Domaizon et al. Freshwater Biology, 2019, 64 (8), pp.1369-1381. ⟨10.1111/fwb.13311⟩ Article dans une revue hal-02625019v1
	Global distribution of Trebouxiophyceae diversity explored by high‐throughput sequencing and phylogenetic approaches Sebastian Metz , David Singer , Isabelle Domaizon , Fernando Unrein , Enrique Lara Environmental Microbiology, 2019, pp.3885-3895. ⟨10.1111/1462-2920.14738⟩ Article dans une revue hal-02618752v1
	How does environmental inter-annual variability shape aquatic microbial communities? A 40-year annual record of sedimentary DNA from a boreal lake (Nylandssjön, Sweden) Eric Capo , Johan Rydberg , Julie Tolu , Isabelle Domaizon , Didier Debroas et al. Frontiers in Ecology and Evolution, 2019, 7, ⟨10.3389/fevo.2019.00245⟩ Article dans une revue hal-02618844v1
	Assessing pollution of aquatic environments with diatoms' DNA metabarcoding: experience and developments from France Water Framework Directive networks Valentin Vasselon , Frédéric Rimet , Isabelle Domaizon , Olivier Monnier , Yorick Reyjol et al. Metabarcoding and Metagenomics, 2019, 3, ⟨10.3897/mbmg.3.39646⟩ Article dans une revue hal-03148548v1
	Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program Estelle Lefrancois , Laure Apothéloz-Perret-Gentil , Philippe Blancher , Samuel Botreau , Cécile Chardon et al. Environmental Science and Pollution Research, 2018, 25 (34), pp.33858-33866. ⟨10.1007/s11356-018-2172-2⟩ Article dans une revue hal-02916342v1
	Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication Marie-Eve Monchamp , Piet Spaak , Isabelle Domaizon , Nathalie Dubois , Damien Bouffard et al. Nature Ecology & Evolution, 2018, 2 (2), pp.317-324. ⟨10.1038/s41559-017-0407-0⟩ Article dans une revue hal-02621266v1
	Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: The relative importance of light and thermal stratification Taylor H Leach , Beatrix E Beisner , Cayelan Carey , Patricia Pernica , Kevin C Rose et al. Limnology and Oceanography Bulletin, 2018, 63 (2), pp.628-646. ⟨10.1002/lno.10656⟩ Article dans une revue hal-02916345v1
	The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems Jan Pawlowski , Mary Kelly-Quinn , Florian Altermatt , Laure Apothéloz-Perret-Gentil , Pedro Beja et al. Science of the Total Environment, 2018, 637-638, pp.1295-1310. ⟨10.1016/j.scitotenv.2018.05.002⟩ Article dans une revue (article de synthèse) hal-02629210v1
	Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming Eric Capo , Didier Debroas , Fabien Arnaud , Marie-Elodie Perga , Cècile Chardon et al. Environmental Microbiology, 2017, 19 (7), pp.2873 - 2892. ⟨10.1111/1462-2920.13815⟩ Article dans une revue hal-01598575v1
	To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments Eric Capo , Isabelle Domaizon , Dominique Maier , Didier Debroas , Christian Bigler Journal of Paleolimnology, 2017, 58 (4), pp.479 - 495. ⟨10.1007/s10933-017-0005-9⟩ Article dans une revue hal-01734500v1
	DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity Isabelle Domaizon , Amanda Winegardner , Eric Capo , Joanna Gauthier , Irene Gregory-Eaves Journal of Paleolimnology, 2017, 58 (1), pp.1-21. ⟨10.1007/s10933-017-9958-y⟩ Article dans une revue hal-01607544v1
	Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter? Valentin Vasselon , Isabelle Domaizon , Frédéric Rimet , Maria Kahlert , Agnes Bouchez Freshwater Science, 2017, 36 (1), pp.162-177. ⟨10.1086/690649⟩ Article dans une revue hal-01606868v1
	Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data Didier Debroas , Isabelle Domaizon , Jean-François Humbert , Ludwig Jardillier , Cécile Lepère et al. FEMS Microbiology Ecology, 2017, 93 (4), pp.1-14. ⟨10.1093/femsec/fix023⟩ Article dans une revue hal-01599376v1
	Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring Valentin Vasselon , Agnes Bouchez , Frédéric Rimet , Stéphan Jacquet , Rosa Trobajo et al. Methods in Ecology and Evolution, 2017, 9 (4), pp.1060-1069. ⟨10.1111/2041-210X.12960⟩ Article dans une revue hal-02916343v1
	Local human pressures influence gene flow in a hybridizing Daphnia species complex Benjamin Alric , M. Most , Isabelle Domaizon , Cécile Pignol , P. Spaak et al. Journal of Evolutionary Biology, 2016, 29 (4), pp.720-735. ⟨10.1111/jeb.12820⟩ Article dans une revue hal-02631603v1
	Molecular microbiology methods for environmental diagnosis Théodore Bouchez , A. L. Blieux , Samuel S. Dequiedt , Isabelle Domaizon , Alexis Dufresne et al. Environmental Chemistry Letters, 2016, 14 (4), pp.423--441. ⟨10.1007/s10311-016-0581-3⟩ Article dans une revue (article de synthèse) hal-01413017v1
	Trophic relationships between metazooplankton communities and their plankton food sources in the Iles Eparses (Western Indian Ocean) Christine Dupuy , Marc Pagano , Patrice Got , Isabelle Domaizon , Alexis Chappuis et al. Marine Environmental Research, 2016, 116, pp.18-31. ⟨10.1016/j.marenvres.2016.02.011⟩ Article dans une revue hal-02638616v1
	Plankton communities of the five "Iles Eparses" (Western Indian Ocean) considered to be pristine ecosystems M Bouvy , Patrice Got , Isabelle Domaizon , M. Pagano , Christophe Leboulanger et al. Acta Oecologica, 2016, 72, pp.9-20. ⟨10.1016/j.actao.2015.10.013⟩ Article dans une revue hal-01420386v1
	Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA Éric Capo , Didier Debroas , Fabien Arnaud , Typhaine Guillemot , Vincent Bichet et al. Molecular Ecology, 2016, 25 (23), pp.5925-5943. ⟨10.1111/mec.13893⟩ Article dans une revue istex hal-01568922v1
	Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France) Cécile Lepère , Isabelle Domaizon , Mylène Hugoni , Agnès Vellet , Didier Debroas Frontiers in Microbiology, 2016, 7 (130), ⟨10.3389/fmicb.2016.00130⟩ Article dans une revue hal-01599386v2
	Multi-scale phylogenetic heterogeneity of archaea, bacteria, methanogens and methanotrophs in lake sediments Elodie Billard , Isabelle Domaizon , Nathalie Tissot , Fabien Arnaud , Emilie Lyautey Hydrobiologia, 2015, 751 (751), pp. 159-173. ⟨10.1007/s10750-015-2184-6⟩ Article dans une revue hal-01349098v1
	Evidence for an active rare biosphere within freshwater protists community Didier Debroas , Mylène Hugoni , Isabelle Domaizon Molecular Ecology Resources, 2015, 24 (6), pp.1236-1247. ⟨10.1111/mec.13116⟩ Article dans une revue istex hal-01245679v1
	Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea Mylène Hugoni , Hélène Agogué , Najwa Taib , Isabelle Domaizon , Anne Moné et al. Aquatic Microbial Ecology, 2015, 70 (2), pp.473-483. ⟨10.1007/s00248-015-0601-z⟩ Article dans une revue hal-01354835v1
	Acceleration of cyanobacterial dominance in north temperate-subarctic lakes during the Anthropocene Zofia E Taranu , Irene Gregory-Eaves , Peter R Leavitt , Lynda Bunting , Teresa Buchaca et al. Ecology Letters, 2015, 18 (4), pp.375-84. ⟨10.1111/ele.12420⟩ Article dans une revue istex hal-02639692v1
	Nodularin and cylindrospermopsin: a review of their effects on fish Benoît Sotton , Isabelle Domaizon , Orlane Anneville , Franck Cattanéo , Jean Guillard Reviews in Fish Biology and Fisheries, 2015, 25 (1), pp.1-19. ⟨10.1007/s11160-014-9366-6⟩ Article dans une revue (article de synthèse) hal-02636183v1
	Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes Mylène Hugoni , Isabelle Domaizon , Najwa Taib , Corinne Biderre-Petit , Hélène Agogué et al. Environmental Microbiology Reports, 2015, 7 (2), pp.321-329. ⟨10.1111/1758-2229.12251⟩ Article dans une revue hal-01354841v1
	Blue-Green Algae in a “Greenhouse Century”? New Insights from Field Data on Climate Change Impacts on Cyanobacteria Abundance Orlane Anneville , Isabelle Domaizon , Onur Kerimoglu , Frédéric Rimet , Stéphan Jacquet Ecosystems, 2015, 18 (3), pp.441-458. ⟨10.1007/s10021-014-9837-6⟩ Article dans une revue hal-02916371v1
	High-resolution paleolimnology opens new management perspectives for lakes adaptation to climate warming Marie-Elodie Perga , Victor Frossard , Jean-Philippe Jenny , Benjamin Alric , Fabien Arnaud et al. Frontiers in Ecology and Evolution, 2015, 3, pp.72. ⟨10.3389/fevo.2015.00072⟩ Article dans une revue hal-01691615v1
	Effects of nutrients and warming on Planktothrix dynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA Olga Savichtcheva , Didier Debroas , Marie Elodie Perga , Fabien Arnaud , Clement Villar et al. Freshwater Biology, 2015, 60 (1), pp.31-49. ⟨10.1111/fwb.12465⟩ Article dans une revue istex hal-01452304v1
	Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity Eric Capo , Didier Debroas , Fabien Arnaud , Isabelle Domaizon Microbial ecology, 2015, 70 (4), pp.865-875. ⟨10.1007/s00248-015-0627-2⟩ Article dans une revue hal-01254671v1
	The need for ecological monitoring of freshwaters in a changing world: a case study of Lakes Annecy, Bourget, and Geneva Stéphan Jacquet , Isabelle Domaizon , Orlane Anneville Environmental Monitoring and Assessment, 2014, 186 (6), pp.3455-3476. ⟨10.1007/s10661-014-3630-z⟩ Article dans une revue hal-02639966v1
	Trophic transfer of microcystins through the lake pelagic food web Benoît Sotton , Jean Guillard , Orlane Anneville , Marjorie Marechal , Olga Savichtcheva et al. Science of the Total Environment, 2014, 466, pp.152-163. ⟨10.1016/j.scitotenv.2013.07.020⟩ Article dans une revue istex hal-02638414v1
	When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta) Frédéric Rimet , Rosa Trobajo , David.G. Mann , Lenaïg Kermarrec , Alain Franc et al. Protist, 2014, 165 (3), pp.245-259. ⟨10.1016/j.protis.2014.03.005⟩ Article dans une revue istex hal-02640347v1
	Long livestock farming history and human landscape shaping revealed by lake sediment DNA Charline Giguet-Covex , Johan Pansu , Fabien Arnaud , Pierre-Jérôme Rey , Christophe Griggo et al. Nature Communications, 2014, 5, 7p. ⟨10.1038/ncomms4211⟩ Article dans une revue halsde-00944038v1
	Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity Najwa Taib , Jean-François Mangot , Isabelle Domaizon , Gisèle Bronner , Didier Debroas PLoS ONE, 2013, 8 (3), pp.e58950. ⟨10.1371/journal.pone.0058950⟩ Article dans une revue hal-00840867v1
	Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems. Mylène Hugoni , Sandrine Etien , Antoine Bourges , Cécile Lepère , Isabelle Domaizon et al. Research in Microbiology, 2013, 164 (4), a compléter. ⟨10.1016/j.resmic.2013.01.004⟩ Article dans une revue hal-00813624v1
	Impact of Toxic Cyanobacterial Blooms on Eurasian Perch (Perca fluviatilis): Experimental Study and In Situ Observations in a Peri-Alpine Lake Benoit Sotton , Jean Guillard , Sylvie Bony , Alain Devaux , Isabelle Domaizon et al. PLoS ONE, 2013, 12 e52243 (12), pp.1-12. ⟨10.1371/journal.pone.0052243⟩ Article dans une revue halsde-00787614v1
	Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems. Cécile Lepère , Isabelle Domaizon , Najwa Taïb , Jean-François Mangot , Gisèle Bronner et al. FEMS Microbiology Ecology, 2013, 85 (1), epub ahead of print. ⟨10.1111/1574-6941.12100⟩ Article dans une revue hal-00806709v1
	Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters Mylène Hugoni , Najwa Taib , Didier Debroas , Isabelle Domaizon , Isabelle Jouan-Dufournel et al. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (15), pp.6004-6009. ⟨10.1073/pnas.1216863110⟩ Article dans une revue hal-01354640v1
	Are cyanobacterial blooms trophic dead ends? Marie-Elodie Perga , Isabelle Domaizon , Jean Guillard , Valérie Hamelet , Orlane Anneville Oecologia, 2013, 172 (2), pp.551 - 562. ⟨10.1007/s00442-012-2519-1⟩ Article dans une revue istex hal-02651948v1
	DNA from lake sediments reveals the long-term dynamics and diversity of Synechococcus assemblages Isabelle Domaizon , Olga Savichtcheva , Didier Debroas , Fabien Arnaud , Clement Villar et al. Biogeosciences, 2013, 10 (10), p. 3817-3838. ⟨10.5194/bg-10-3817-2013⟩ Article dans une revue halsde-00866805v1
	Dynamique de la biodiversité lacustre et changement global : les lacs périalpins Bernard Montuelle , Orlane Anneville , Alexis Champigneulle , Isabelle Domaizon , Jean Marcel Dorioz et al. Innovations Agronomiques, 2012, 23, pp.3-18. ⟨10.17180/ba6r-nr55⟩ Article dans une revue hal-02649651v1
	Evolution de paramètres clés indicateurs de la qualité des eaux et du fonctionnement écologique des grands lacs péri-alpins (Léman, Annecy, Bourget): Etude comparative de trajectoires de restauration post-eutrophisation Stéphan Jacquet , Orlane Anneville , Isabelle Domaizon Archives des sciences, 2012, 65, pp.225-242 Article dans une revue hal-02643962v1
	Short-term uptake of microcystin-LR by Coregonus lavaretus: GST activity and genotoxicity Benoit Sotton, , Alain Devaux , Nicolas Givaudan , Jean Guillard , Isabelle Domaizon et al. Ecotoxicology, 2012, 21 (7), pp.1788-1796. ⟨10.1007/s10646-012-0913-4⟩ Article dans une revue istex halsde-00747223v1
	Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes. Jean-François Mangot , Isabelle Domaizon , Najwa Taib , Nemr Marouni , Emilie Duffaud et al. Environmental Microbiology, 2012, 15 (6), epub ahead of print. ⟨10.1111/1462-2920.12065⟩ Article dans une revue istex hal-00821927v1
	Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation. Isabelle Domaizon , Cécile Lepère , Didier Debroas , Marc Bouvy , Jean Francois Ghiglione et al. BMC Microbiology, 2012, 12, pp.202. ⟨10.1186/1471-2180-12-202⟩ Article dans une revue hal-00816078v1
	A 2-Year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France) Lyria Berdjeb , Jean François Ghiglione , Isabelle Domaizon , Stéphan Jacquet Microbial ecology, 2011, 61 (4), pp.941-954. ⟨10.1007/s00248-010-9767-6⟩ Article dans une revue istex hal-02651736v1
	Ecological traits of planktonic viruses and prokaryotes along a full-salinity gradient. Yvan Bettarel , Thierry Bouvier , Corinne Bouvier , Claire Carré , Anne Desnues et al. FEMS Microbiology Ecology, 2011, 76 (2), pp.360-72. ⟨10.1111/j.1574-6941.2011.01054.x⟩ Article dans une revue hal-00820091v1
	Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities. Bushra Parveen , Jean-Philippe Reveilliez , Isabelle Mary , Viviane Ravet , Gisèle Bronner et al. FEMS Microbiology Ecology, 2011, 77 (3), pp.461-76. ⟨10.1111/j.1574-6941.2011.01130.x⟩ Article dans une revue hal-00841014v1
	Spatial match between Planktothrix rubescens and whitefish in a mesotrophic peri-alpine lake : Evidence of toxins accumulation Benoît Sotton , Orlane Anneville , Sabrina Cadel-Six , Isabelle Domaizon , Sophie Krys et al. Harmful Algae, 2011, 10, pp.749-758. ⟨10.1016/j.hal.2011.06.006⟩ Article dans une revue istex hal-02651021v1
	Virus, bactéries et protistes pathogènes du phytoplancton, le rôle insoupçonné des parasites dans le fonctionnement des écosystèmes aquatiques Stéphan Jacquet , Isabelle Domaizon , Sylvie Masquelier , Cécile Lepère , Laure Guillou et al. Le Courrier de l'environnement de l'INRA, 2011, 60 (60), pp.37-50 Article dans une revue hal-01196814v1
	Quantitative PCR enumeration of total/toxic Planktothrix rubescens and total cyanobacteria in preserved DNA isolated from lake sediments. Olga Savichtcheva , Didier Debroas , Rainer Kurmayer , Clement Villar , Jean-Philippe Jenny et al. Applied and Environmental Microbiology, 2011, 77 (24), pp.8744-53. ⟨10.1128/AEM.06106-11⟩ Article dans une revue hal-00840945v1
	Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change. M. Bouvy , Y. Bettarel , C. Bouvier , I. Domaizon , S. Jacquet et al. Environmental Microbiology, 2011, 13 (7), pp.1842-57. ⟨10.1111/j.1462-2920.2011.02498.x⟩ Article dans une revue istex hal-00819823v1
	Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes Lyria Berdjeb , Thomas Pollet , Isabelle Domaizon , Stéphan Jacquet BMC Microbiology, 2011, 11 (88), pp.88. ⟨10.1186/1471-2180-11-88⟩ Article dans une revue hal-02646358v1
	Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach Cécile Lepère , Sylvie Masquelier , Jean-François Mangot , Didier Debroas , Isabelle Domaizon The International Society of Microbiologial Ecology Journal, 2010, 4, pp.1509-1519. ⟨10.1038/ismej.2010.83⟩ Article dans une revue hal-00528243v1
	Review of the Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly discovered in lacustrine systems Jean-François Mangot , Didier Debroas , Isabelle Domaizon Hydrobiologia, 2010, 659 (xx), pp.xxx-xxx. ⟨10.1007/s10750-010-0268-x⟩ Article dans une revue istex hal-00528246v1
	Seasonal and spatial variability of virio-, bacterio- and picophytoplanktonic abundances in three peri-alpine lakes Sébastien Personnic , Isabelle Domaizon , Ursula Dorigo , Lyria Berdjeb , Stéphan Jacquet Hydrobiologia, 2009, 627, pp.99-116. ⟨10.1007/s10750-009-9718-8⟩ Article dans une revue istex hal-02661745v1
	Community structure and dynamics of small eukaryotes targeted by new oligonucleotide probes: new insight into the lacustrine microbial food web Jean-François Mangot , Cécile Lepère , Christophe Bouvier , Didier Debroas , Isabelle Domaizon Applied and Environmental Microbiology, 2009, 75 (19), pp.6373-81. ⟨10.1128/AEM.00607-09⟩ Article dans une revue hal-00528240v1
	Seasonal variations of microbial abundances and virus-versus flagellate-induced mortality of picoplankton in three peri-alpine lakes Sébastien Personnic , Isabelle Domaizon , Télesphore Sime-Ngando , Stéphan Jacquet Journal of Plankton Research, 2009, 31 (10), pp.1161-1177. ⟨10.1093/plankt/fbp057⟩ Article dans une revue hal-02667589v1
	Seasonal variations of microbial abundances and virus- vs flagellate-induced mortality of picoplankton in three peri-alpine lakes Sébastien Personnic , Isabelle Domaizon , Télesphore Sime-Ngando , Stéphan Jacquet Journal of Plankton Research, 2009, 31 (10), pp.1161-1177 Article dans une revue hal-00527095v1
	Unexpected importance of potential parasites in the composition of the freshwater small-eukaryote community Cécile Lepère , Isabelle Domaizon , Didier Debroas Applied and Environmental Microbiology, 2008, 74 (10), pp.2940-9. ⟨10.1128/AEM.01156-07⟩ Article dans une revue hal-00528208v1
	Short term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget Télesphore Sime-Ngando , Jonathan Colombet , Sébastien Personnic , Isabelle Domaizon , Ursula Dorigo et al. Ecological Research, 2008, 23, pp.851-861 Article dans une revue hal-02656091v1
	Short-term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget Télesphore Sime-Ngando , J. Colombet , Sébastien Personnic , Isabelle Domaizon , Ursula Dorigo et al. Ecological Research, 2008, 23 (5), pp.851-861. ⟨10.1007/s11284-007-0448-y⟩ Article dans une revue istex hal-00525993v1
	Do small grazers influence virus-induced mortality of bacteria in Lake Bourget (France)? Stéphan Jacquet , Isabelle Domaizon , Sébastien Personnic , Télesphore Sime-Ngando Fundamental and Applied Limnology, 2007, 170 (2), pp.125-132 Article dans une revue hal-00525972v1
	Community composition of lacustrine small eukaryotes in hyper-eutrophic conditions in relation to top-down and bottom-up factors Cécile Lepère , Isabelle Domaizon , Didier Debroas FEMS Microbiology Ecology, 2007, 61 (3), pp.483-95. ⟨10.1111/j.1574-6941.2007.00359.x⟩ Article dans une revue hal-00528205v1
	Succession and regulation factors of small eukaryote community composition in a lacustrine ecosystem (Lake Pavin) Cécile Lepère , Delphine Boucher , Ludwig Jardillier , Isabelle Domaizon , Didier Debroas Applied and Environmental Microbiology, 2006, 72 (4), pp.2971-81. ⟨10.1128/AEM.72.4.2971-2981.2006⟩ Article dans une revue hal-00528203v1
	Assessing the microbial community dynamics and the role of bacteriophages in bacterial mortality in lake Geneva Solange Duhamel , Isabelle Domaizon , Sébastien Personnic , Stéphan Jacquet Revue des Sciences de l'Eau / Journal of Water Science, 2006, 19 (2), pp.115-126 Article dans une revue hal-02665567v1
	Microbial community structure and dynamics in the largest natural French lake (lake Bourget) Jérôme Comte , Stéphan Jacquet , Sylvie Viboud , Dominique Fontvieille , Annie Millery et al. Microbial ecology, 2006, 52, pp.72-89. ⟨10.1007/s00248-004-0230-4⟩ Article dans une revue istex hal-02665986v1
	Estimates of protozoan- and viral-mediated mortality of bacterioplankton in Lake Bourget (France) Stéphan Jacquet , Isabelle Domaizon , Sébastien Personnic , Angia Sriram Pradeep Ram , Mikal Hedal et al. Freshwater Biology, 2005, 50 (4), pp.627-645 Article dans une revue hal-00527477v1
	Estimates of protozoan- and viral-mediated mortality of bacterioplankton in lake Bourget (France) Stéphan Jacquet , Isabelle Domaizon , Sébastien Personnic , Angia Srieam Pradep Ram , Mikal Hedal et al. Freshwater Biology, 2005, 50 (4), pp.627-645. ⟨10.1111/j.1365-2427.2005.01349.x⟩ Article dans une revue hal-02682106v1
	Bottom-up and top-down control of bacterial community composition in the euphotic zone of a reservoir Ludwig Jardillier , Maryline Basset , Isabelle Domaizon , André Belan , Christian Amblard et al. Aquatic Microbial Ecology, 2004, 35, pp.259-273 Article dans une revue hal-02672401v1

	AquaEcOmics meeting: exploring aquatic ecology through omics. March 17-20, 2025. Program and abstracts booklet Luisa Orsini , Loïs Maignien , Kristian Meissner , Bettina Thalinger , Pedro Beja et al. AquaEcomics 2025, Mar 2025, Evian-les-Bains, France. 135 p., 2025, ⟨10.57745/VBSHUO⟩ Proceedings/Recueil des communications hal-05250537v1
	Autour du lac du Bourget - Actes du colloque Stéphan Jacquet , Isabelle Domaizon , Jérôme Poulenard , Fabien Arnaud Autour du lac du Bourget - Colloque pluridisciplinaire, May 2006, Le Bourget du Lac, France. La page blanche, 270 p., 2008, 2-915351-10-4 Proceedings/Recueil des communications hal-02824462v1

	Phytoplancton des plans d'eau d'Outre-Mer : développement d'outils de monitoring basés sur l'ADN - Livrable 4 : Application de l'approche ADNe pour recenser le phytoplancton des plans d'eau d'Outre-Mer : résultats préliminaires d'une application large échelle Benjamin Alric , Domaizon Isabelle , Christophe Laplace-Treyture , Frédéric Rimet , Clarisse Lemonnier Livrable 4, Pole R&D ECLA. 2024 Rapport hal-05306238v1
	Development of quantitative eDNA methods for the study of fish phenology in lakes : eRNA extraction from water samples f Marine Vautier , Cecile Chardon , Cyrielle Galiegue , Isabelle Domaizon INRAE; OFB. 2024 Rapport hal-04698237v1
	Phytoplancton des plans d'eau d'Outre-Mer : développement d'outils de biosurveillance basés sur l'ADN - Livrable 5 Benjamin Alric , Laurine Viollaz , Domaizon Isabelle , Christophe Laplace-Treyture , Frédéric Rimet Pole R&D ECLA. 2024 Rapport hal-05306280v1
	Projet Inva-Biomonitoring Développement de méthodes de biomonitoring pour le suivi des espèces invasives en lacs Marine Vautier , Isabelle Domaizon INRAE - CARRTEL. 2024 Rapport hal-04887944v1
	Development of quantitative eDNA methods for the study of fish phenology in lakes: Deliverable 1 – eRNA sampling and filtration protocols Marine Vautier , Domaizon Isabelle INRAE. 2024 Rapport hal-04698235v1
	Projet Inva-Biomonitoring Développement de méthodes de biomonitoring pour le suivi des espèces invasives en lacs Marine Vautier , Julien Dublon , Isabelle Domaizon INRAE - CARRTEL; ECLA. 2024 Rapport hal-04888364v1
	Référentiel technique pour la validation indépendante des outils utilisant l'ADN environnemental Nathalie Guigues , Isabelle Vitte , Sylvie Betat , Lucas Sire , Pierre Boissery et al. LNE, Laboratoire National de Métrologie et d'Essais; OFB, Office Français de la Biodiversité. 2023 Rapport hal-05408717v1
	Prospective des effets du changement climatique sur le lac d’Annecy : Tendances et défis à venir concernant les services rendus Laura Soares , Victor Frossard , Olivia Desgué-Itier , Isabelle Domaizon , Cécilia Barouillet et al. Inrae. 2023 Rapport (rapport technique) hal-04682537v1
	Phytoplancton des plans d'eau d'Outre-Mer: développement d'outils de monitoring basés sur l'ADN Livrable 3 : « Application de l'approche ADNe pour recenser le phytoplancton des plans d'eau d'Outre-Mer: méthodes et premiers résultats » Alexis Canino , Benjamin Alric , Maria-Mercedes Nicolosi-Gelis , Christophe Laplace-Treyture , Agnes Bouchez et al. INRAE UMR CARRTEL; INRAE UR EABX. 2023 Rapport hal-04116746v1
	Mise au point d'un protocole de quantification (sur la base d'une comparaison de méthodes) des populations de dreissènes (Dreissena polymorpha et Dreissena rostriformis bugensis) au sein du Léman et premières évaluations in situ Rapport final Jean-Nicolas Beisel , Domaizon Isabelle , Jacquet Stéphan , Guillard Jean , Trunfio Nicolas et al. INRAE. 2023 Rapport hal-04682214v1
	QuantiFish_Développement de méthodes ADNe quantitatives pour l’étude de la phénologie des poissons en lacs Marine Vautier , Chloé Goulon , Jean Guillard , Clément Rautureau , Hervé Rogissart et al. INRAE. 2023 Rapport hal-04887692v1
	Development of quantitative eDNA methods for the study of fish phenology in lakes eDNA-based innovations: Deliverable 3 – Advances in eRNA approaches and other eDNA-based innovations Marine Vautier , Hervé Rogissart , Jean Guillard , Isabelle Domaizon INRAE; OFB. 2023 Rapport hal-04698241v1
	FRAI DU CORÉGONE (COREGONUS SP.) ET DE LA PERCHE (PERCA FLUVIATILIS) DANS LE LÉMAN - CAMPAGNE 2021 Chloé Goulon , Marine Vautier , Clément Rautureau , Isabelle Domaizon , Jean Guillard INRAE. 2022, pp.15 Rapport hal-04839989v1
	Phytoplancton des plans d'eau d'Outre-Mer : développement d'outils de monitoring basés sur l'ADN (Rapport intermédiaire 2021: Phytoplancton DOM : première application du protocole de terrain et comparaisons entre microscopie/ADNe) Alexis Canino , Christophe Laplace-Treyture , Agnès Bouchez , Isabelle Domaizon , Frédéric Rimet INRAE UMR Carrtel; INRAE UR EABX; Pole R&D ECLA. 2021 Rapport hal-03976768v1
	Diagnoses des trajectoires écologiques des lacs et leur bassin versant via l’analyse de l’ADN préservé dans les sédiments : Synthèse & Guide d’application pour les diagnoses ADN en paléolimnologie Isabelle Domaizon , Cécilia Barouillet INRAE. 2021 Rapport hal-04698228v1
	Phytoplancton des plans d'eau d'Outre-Mer : développement d'outils de monitoring basés sur l'ADN - Livrable 2 : «Phytoplancton DOM : première application du protocole de terrain et comparaisons entre microscopie/ADNe » Alexis Canino , Christophe Laplace-Treyture , Agnes Bouchez , Domaizon Isabelle , Frédéric Rimet Livrable 2, Pole R&D ECLA. 2021 Rapport hal-05306176v1
	Utilisation des coefficients des courbes de Von Bertallanfy pour l’étude de la croissance des medakas (expérimental) et des corégones (in situ dans le Léman) en fonction de facteurs biotiques et abiotiques Simon Bazin , Orlane Anneville , Isabelle Domaizon , Chloé Goulon , Jean Guillard et al. [Rapport Technique] ECLA; UMR CARRTEL. 2020 Rapport (rapport technique) hal-03145647v1
	Phytoplancton des plans d'eau d'Outre-Mer : développement d'outils de monitoring basés sur l'ADN Alexis Canino , Christophe Laplace-Treyture , Agnes Bouchez , Isabelle Domaizon , Frédéric Rimet Livrable 1, Pole R&D ECLA. 2020 Rapport hal-05305968v1
	Eco-AlpsWater Innovative Ecological Assessment and Water Management Strategy for the Protection of Ecosystem Services in Alpine Lakes and Rivers Marine Vautier , Isabelle Domaizon INRAE CARRTEL. 2018 Rapport hal-04888701v1
	Suivi de la qualité des eaux du lac d’Annecy. Rapport 2011 Isabelle Domaizon , Leslie Lainé , Jérôme Lazzarotto , Marie-Elodie Perga , Frédéric Rimet et al. [Rapport Technique] 2012 Rapport (rapport technique) hal-02808713v1
	Suivi de la qualité des eaux du lac d’Annecy. Rapport 2010 Isabelle Domaizon , Daniel Gerdeaux , Leslie Lainé , Jérôme Lazzarotto , Marie-Elodie Perga et al. [Rapport Technique] 2011 Rapport (rapport technique) hal-02810679v1
	Suivi scientifique du lac du Bourget - Année 2009 Stéphan Jacquet , Frédéric Rimet , Cyrille Girel , Marie-Elodie Perga , Gérard Paolini et al. [Rapport Technique] 2010 Rapport (rapport technique) hal-02822078v1
	Suivi de la qualité des eaux du lac d’Annecy. Rapport 2009 Isabelle Domaizon , Daniel Gerdeaux , Jean-Claude Druart , Leslie Lainé , Jérôme Lazzarotto et al. [Rapport Technique] 2010 Rapport (rapport technique) hal-02818658v1
	Suivi scientifique du lac du Bourget - Année 2008 Stéphan Jacquet , Frédéric Rimet , Sébastien Cachera , Cyrille Girel , Marie-Elodie Perga et al. [Rapport Technique] 2009 Rapport (rapport technique) hal-02823291v1
	Suivi scientifique du lac du Bourget - Année 2007 Stéphan Jacquet , Gérard Paolini , Jérôme Lazzarotto , Cyrille Girel , Jean-Claude Druart et al. [Rapport Technique] 2008 Rapport (rapport technique) hal-02819667v1
	Suivi scientifique du lac du Bourget - Année 2006 Stéphan Jacquet , Gérard Paolini , Jérôme Lazzarotto , Marie-Elodie Perga , Isabelle Domaizon et al. [Rapport Technique] 2007 Rapport (rapport technique) hal-02824796v1

	Accumulation accrue de carbone sédimentaire malgré un contexte de ré-oligotrophisation : Cas des lacs profonds périalpins, France Olivia Desgué-Itier , Cécilia Barouillet , Isabelle Domaizon , David Etienne , Irene Gregory-Eaves et al. 6èmes Journées Internatinales de limnologie et d'océanographie, Oct 2024, Bordeaux, France Communication dans un congrès hal-04824010v1
	Applications of environmental DNA-RNA in freshwaters ecosystems: advances, expectations for operational biomonitoring, challenges & prospects Isabelle Domaizon International Environmental and Agronomical Genomics symposium, GDR Genomic Environmental (Research work group Environmental Genomics) & France Génomique, Feb 2024, Toulouse, France Communication dans un congrès hal-04698588v1
	Lake sedimentary DNA to reveal long-term changes in micro - eukaryotic diversity and lake functioning: Recent advances and challenges Isabelle Domaizon Ökologisches Kolloquium Insbruck University, May 2023, Onlince Conference, Austria Communication dans un congrès hal-04698663v1
	A quantitative eDNA-based method to monitor whitefish spawning in lakes Marine Vautier , Cécile Chardon , Jean Guillard , Chloé Goulon , Isabelle Domaizon 15th International Symposium on Biology and Management of Coregonid fishes (ISBMC), Sep 2023, Evian-Les-Bains, France Communication dans un congrès hal-04888566v1
	Acoustic camera, a non-invasive approach to monitor whitefish spawning phenology in the shallow water areas of peri-alpine lakes Hervé Rogissart , Clément Rautureau , Franck Cattanéo , Isabelle Domaizon , Chloé Goulon et al. 15th International Symposium on Biology and Management of Coregonid fishes (ISBMC), Sep 2023, Evian les Bains, France Communication dans un congrès hal-04462993v1
	Integration of lake modeling and paleolimnological records to perform long-term simulations of water quality in Lake Geneva over 250 years (1850–2100 period) Laura Soares , Olivia Desgué-Itier , Isabelle Domaizon , Cecilia Barouillet , Jean-Philippe Jenny EGU General Assembly 2023, Apr 2023, Vienna, Austria. ⟨10.5194/egusphere-egu23-15778⟩ Communication dans un congrès hal-04817232v1
	Past and future climate change effects on thermal regime and oxygen solubility of four peri-alpine lakes Olivia Desgué-Itier , Laura Melo Vieira Soares , Orlane Anneville , Damien Bouffard , Vincent Chanudet et al. SIL 2022 - 36th Congress of International Society of Limnology, International Society of Limnology, Aug 2022, Berlin, Germany Communication dans un congrès hal-03961108v1
	Paleo-reconstitutions de la diversité micro-eucaryote au service de questions en écologie lacustre : enjeux, avancées récentes, et challenges. Isabelle Domaizon AFEM - Association Francaise d'Ecologie Microbienne- Journées thématiques 2022, Jun 2022, Aubière / Clermont-Ferrand, France Communication dans un congrès hal-04698634v1
	Détection et suivi d’espèces piscicoles en milieu lacustre par l'ADNe Isabelle Domaizon Webinaire ADNe – Journée de réflexion sur le potentiel des méthodes basées sur l’ADN environnemental pour la surveillance et l’évaluation de la biodiversité marine dans le cadre des politiques publiques, PatriNat, Nov 2021, Onlince Conference, France Communication dans un congrès hal-04698639v1
	The paradox of increasing long-term carbon sequestration in lake ecosystems despite reoligotrophication : the case of four large French perialpine lakes Julie Rotschi , Isabelle Domaizon , Irene Gregory-Eaves , Andrea Lami , Cécilia Barouillet et al. EGU General Assembly 2021, Apr 2021, Vienna, Austria. ⟨10.5194/egusphere-egu21-11911⟩ Communication dans un congrès hal-04817355v1
	Lake sedimentary DNA to reveal long-term changes in aquatic biodiversity and ecosystem functioning Isabelle Domaizon 1st DNAQUA International Conference, COST DNAqua-Net, Mar 2021, Online, France. ⟨10.3897/aca.4.e65378⟩ Communication dans un congrès hal-04698658v1
	Techniques ADNe appliquées aux milieux aquatiques- Ouvertures et Perspectives Isabelle Domaizon Quo vadis, la biosurveillance basée sur l’ADNe ?, COST DNAqua-Net & Carnot Eau et Environnement, Mar 2021, Onlince Conference, France Communication dans un congrès hal-04698621v1
	eDNA tools for ecological diagnoses in lakes and rivers Isabelle Domaizon SUERA Congress : How to support and develop at several levels the dynamics of actors in favour of the preservation and enhancement of water resource and their uses?, SUERA, Nov 2021, Evian les Bains, France Communication dans un congrès hal-04698647v1
	Microbial metacommunity: a METABAR coding approach Marc Buée , Matthieu Barret , Maria Bernard , Didier Debroas , Isabelle Domaizon et al. 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France Communication dans un congrès hal-01607836v1
	Environmental DNA metabarcoding to investigate historic changes in biodiversity Johan Pansu , Charline Giguet-Covex , Francesco Ficetola Gentile , Ludovic Gielly , Frederic Boyer et al. 6th. Congrès International « Barcode of Life », 2015, guelph, Canada. p. 264 Communication dans un congrès hal-01879611v1
	Characterization of prokaryotic and eukaryotic diversity in microbial mats from the gouffre de la Sambuy Seythenex, Savoie, France. Isabelle Domaizon , Didier Cailhol , Emilie Chalmin , Fabien Hoblea , Yann Tual "Karst and Microorganisms " 22nd International Karstological School "Classical karst", Jun 2014, Postojna, Slovenia Communication dans un congrès halsde-01023697v1
	DNA barcoding from lake sediments: an unprecedented "deep" view of past vegetation dynamics and human land-use Charline Giguet-Covex , Johan Pansu , Pierre Taberlet , Ludovic Gielly , Fabien Arnaud et al. PAGES 4th Open Science Meeting, 2013, Goa, India Communication dans un congrès halsde-00931929v1
	Transfert des matières organiques naturelles et polluantes à travers le système karstique : rôle du mondmilch Emilie Chalmin , Yves Perrette , Jérôme Poulenard , Isabelle Domaizon , Dominique Genty et al. Séminaire ResMO (Réseau Matières Organiques), Jan 2013, Biarritz, France Communication dans un congrès halsde-00866790v1
	Lake sediment DNA barcoding: a new tool to reconstruct past human activities and plant cover? Charline Giguet-Covex , Johan Pansu , Pierre Taberlet , Ludovic Gielly , Fabien Arnaud et al. International paleolimnology symposium, 2012, Glasgow, United Kingdom Communication dans un congrès halsde-00932029v1
	Long term dynamics and diversity of freshwater picocyanobacteria: Coupling between molecular tool and paleolimniological approach Isabelle Domaizon , Olga Savichtcheva , Didier Debroas , Clement Villar , Cécile Pignol et al. International paleolimnology symposium, 2012, Glasgow, United Kingdom Communication dans un congrès halsde-00932018v1
	Cyanobacterial bloom: trophic dead-ends or unexpected dietary bonus? Marie-Elodie Perga , Isabelle Domaizon , Jean Guillard , Orlane Anneville The 7th International Conference on Applications of Stable Isotope Techniques to Ecological Studies, Saisissez le nom du laboratoire, du service ou du département., Ville service., Aug 2012, Brest, France Communication dans un congrès hal-02802519v1
	Gliding from limnology to paleolimnology to study the ecosystem-wide consequences of human pressures on lake food webs Marie-Elodie Perga , Benjamin Alric , Fabien Arnaud , Vincent Berthon , Didier Debroas et al. International paleolimnology symposium, 2012, Glasgow, United Kingdom Communication dans un congrès halsde-00931994v1
	The analysis of preserved DNA to assess 17 changes in cyanobacteria and diatoms dynamics and diversity: coupling paleolimninogy and molecular tools Isabelle Domaizon , Olga Savichtcheva , Amy Kirkham , D. Debroas , Clement Villar et al. ASLO 2011. Aquatic Sciences Meeting, Feb 2011, San Juan, Puerto Rico Communication dans un congrès hal-02805945v1
	Characterization of moonmilk deposits as a potential natural recorder of organic matter and contaminant flows Emilie Chalmin , Yves Perrette , Jérôme Poulenard , Isabelle Domaizon , Abdel Saber 6th International Conférence, Climate Change- the Karst Record, Jun 2011, Birmingham, United Kingdom Communication dans un congrès halsde-00720121v1
	The use of preserved DNA to assess historical diatom communities in peri alpine lake Bourget : a paleolimnological approach Amy Kirkham , Marie-Elodie Perga , Didier Debroas , Clement Villar , Olga Savichtcheva et al. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France Communication dans un congrès hal-02757316v1
	24 - Distribution spatiale journalière du corégone lors d'un bloom de Planktothrix rubescens : une voie directe d'accumulation de microcystine Benoît Sotton , Jean Guillard , S. Cadel-Six , Isabelle Domaizon , S. Krys et al. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France Communication dans un congrès hal-02758167v1
	New insights on potential host-parasites associations revealed by short-term variations of the Perkinsozoa abundance in lacustrine planktonic systems Jean-François Mangot , Didier Debroas , Isabelle Mary , Isabelle Domaizon Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France Communication dans un congrès hal-02757004v1
	Application of real-time PCR (QPCR) for enumeration of Planktothrix population (cyanobacteria) in the lake sediments : a paleolimnological approach Olga Savichtcheva , Didier Debroas , Marie-Elodie Perga , Clement Villar , Amy Kirkham et al. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France Communication dans un congrès hal-02752760v1
	PCR and quantitative-PCR to analyse prey-specific cladocerans feeding: optimisation of Planktothrix detection in Daphnia diet Olga Savichtcheva , Benoît Sotton , Clement Villar , Nicolas Givaudan , Orlane Anneville et al. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France Communication dans un congrès hal-02753791v1
	Détermination des principaux facteurs régulant la structure eubacterienne dans le lac du Bourget (haute-savoie, france) Lyria Berdjeb , Jean François Ghiglione , Isabelle Domaizon , Stéphan Jacquet Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France Communication dans un congrès hal-02756794v1
	Les Réseaux trophiques microbiens : structure et facteurs de contrôle dans le lac du Bourget Isabelle Domaizon , Sébastien Personnic , Cécile Lepère , Jérôme Comte , Abdou Mdabe-Sene et al. Autour du lac du Bourget - Colloque pluridisciplinaire, May 2006, Le Bourget du Lac, France Communication dans un congrès hal-02758267v1
	Les Réseaux trophiques microbiens Isabelle Domaizon , Sébastien Personnic , Jérôme Comte , Cécile Lepère , Abdourahmane Mbade Sène et al. Autour du lac du Bourget, May 2006, Le Bourget du Lac, France. pp. 116-124 Communication dans un congrès halshs-00380857v1
	Research infrastructures for long term experiments and monitoring in freshwater ecosystems facing anthropogenic and natural pressures. Isabelle Domaizon , Didier Azam , Jean-Luc Baglinière , Philippe Gaudin , Thierry Caquet ANAEE Workshop 2008, Sep 2008, Paris, France. 2 p Communication dans un congrès hal-01453784v1
	Dynamique et rôle régulateur des virus aquatiques : le cas du lac du Bourget Sébastien Personnic , Isabelle Domaizon , Pascal Perney , Stéphan Jacquet Autour du lac du Bourget - Colloque pluridisciplinaire, May 2006, Le Bourget du Lac, France Communication dans un congrès hal-02756484v1
	Effet des virus et des protistes flagellés sur la dynamique des ressources nutritives et la qualité de la matière organique en milieu lacustre Lyria Berdjeb , Isabelle Domaizon , Yves Perrette , Pascal Perney , Stéphan Jacquet Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Oct 2007, La grande Motte, France Communication dans un congrès hal-00199093v1
	Résultats préliminaires de l'impact de la lyse virale et de la prédation par les flagellés hétérotrophes sur la structure de la matière organique appréhendée par la spectroscopie de fluorescence 3D Lyria Berdjeb , Isabelle Domaizon , Yves Perrette , Stéphan Jacquet Ecole-Chercheur sur la caractérisation de la matière organique, Jun 2007, La Rochelle, France Communication dans un congrès hal-00199090v1
	Structuring factors and processes of microbial food webs in French large lakes I. Domaizon , S. Personnic , U. Dorigo , Télesphore Sime-Ngando , J. Comte et al. European Large Lakes Symposium 2006, Sep 2006, Tartu-Pühajärve, Estonia. 13 p Communication dans un congrès halshs-00281957v1
	First estimates of viral impact on microbial communities in large French alpine lakes Sébastien Personnic , Isabelle Domaizon , Stéphan Jacquet ASLO summer Meeting, Jun 2006, Vancouver, Canada. 10 p Communication dans un congrès hal-02822486v1
	Facteurs et processus régulant la structure et le fonctionnement de la boucle microbienne du lac du Bourget. I. Domaizon , S. Personnic , U. Dorigo , Télesphore Sime-Ngando , J. Comte et al. Colloque national : Autour du lac du Bourget, May 2006, Le Bourget-du-lac, France Communication dans un congrès halshs-00282001v1
	Genetic diversity of freshwater small eukaryotes in the largest French natural lake (Bourget) Cécile Lepère , Isabelle Domaizon , Delphine Debroas 8. Congrès International des Limnologues d'Expression Française (CILEF), Apr 2006, Hammamet, Tunisia Communication dans un congrès hal-02751653v1
	Dynamics and interactions of microbial communities in Lake Geneva with an emphasis on viruses Sébastien Personnic , Isabelle Domaizon , Stéphan Jacquet 9. Symposium on Aquatic Microbial Ecology, Aug 2005, Helsinki, Finland Communication dans un congrès hal-02760606v1
	Structure et facteurs de régulation du picoplancton eucaryote en milieu lacustre Cécile Lepère , Delphine Boucher , Ludwig Jardillier , Isabelle Domaizon , Didier Debroas 2. Colloque d'écologie microbienne, May 2005, Obernai, France Communication dans un congrès hal-02760863v1
	Dynamique des communautés microbiennes lacustres du Bourget et du Léman : rôle des virus Sébastien Personnic , Isabelle Domaizon , Stéphan Jacquet 2. Colloque d'écologie microbienne, May 2005, Obernai, France Communication dans un congrès hal-02762030v1

	Environmental DNA approach to assess phytoplankton communities in lake environments Laurine Viollaz , Frédéric Rimet , Isabelle Domaizon , Christophe Laplace-Treyture , Benjamin Alric SFE2 Lyon, Oct 2024, Lyon, France Poster de conférence hal-04814851v1
	Workflow for analyzing long-term variations in carbon stocks and fluxes (DEEP-C -WP2) Olivia Desgué-Itier , Laurent Millet , Fabien Arnaud , Julien Azuara , Manon Boulay et al. Journées annuelles FairCarboN, Nov 2024, Sète, France Poster de conférence hal-04824072v1
	Three eDNA approaches correlated with the reproductive dynamics of two invasive dreissen mussels in lakes Marine Vautier , Isabelle Domaizon International conference in Ecology & Evolution (SFE2), Oct 2024, Lyon, France Poster de conférence hal-04888621v1
	A quantitative eDNA-based method to monitor spawning activity of two emblematic fish species in lake Geneva Marine Vautier , Cécile Chardon , Chloé Goulon , Jean Guillard , Isabelle Domaizon DNAQUA2021 International Conference, Mar 2021, Thonon-les-Bains, France Poster de conférence hal-04888600v1
	Genetic diversity of freshwater small eukaryotes in the largest french natural lake (Bourget) Cécile Lepère , Isabelle Domaizon , Didier Debroas European Large Lakes Symposium 2006 - Ecosystem changes and their ecological and socioeconomic impacts, Sep 2006, Tartu, Estonia. 1 p., 2006 Poster de conférence hal-02811582v1

	The Sources and Fates of Lake Sedimentary DNA Charline Giguet-Covex , Anthony Foucher , Susanna A. Wood , Isabelle Domaizon , Ludovic Gielly et al. Springer Cham. Tracking Environmental Change Using Lake Sediments, 6, pp.9-52, 2023, ⟨10.1007/978-3-031-43799-1_2⟩ Chapitre d'ouvrage hal-04674304v2
	Protist DNA from Lake Sediments Cécilia Barouillet , Isabelle Domaizon , Eric Capo Springer Cham. Tracking Environmental Change Using Lake Sediments: Sedimentary DNA, 6, pp.175-203, 2023, Developments in Paleoenvironmental Research, vol 21, 978-3-031-43798-4. ⟨10.1007/978-3-031-43799-1_6⟩ Chapitre d'ouvrage hal-04674293v1
	Invasions Toolkit :Current Methods for Tracking the Spread and Impact of Invasive Species S. Kamenova , T.J. Bartley , David Bohan , J.R. Boutain , R.I. Colautti et al. Networks of Invasion: A Synthesis of Concepts, 56, Academic Press, INC., pp.85-182, 2017, Advances In Ecological Research, 9780128043387. ⟨10.1016/bs.aecr.2016.10.009⟩ Chapitre d'ouvrage hal-02790740v1

	A crisis of lake hypoxia in the Anthropocene: The long-term effects of climate and nutrients Laura Soares , Jean-Philippe Jenny , Olivia Desgué-Itier , Cécilia Barouillet , Damien Bouffard et al. 2023 Pré-publication, Document de travail hal-04311118v1
	Changes in Ciliate Communities Reveal Modification of Lake Functioning Over the Last Century Barouillet Cécilia , Valentin Vasselon , François Keck , Laurent Millet , David Etienne et al. 2021 Pré-publication, Document de travail hal-03474889v1

	IMPOPSIS -Impact sur les populations de poissons du Léman des campagnes sismiques Emilie Réalis-Doyelle , Chloé Goulon , Franck Cattanéo , Lucia Di Iorio , Isabelle Domaizon et al. 2022 Vidéo hal-04847819v1

	PaleoEcoGen: Unlocking the power of ancient environmental DNA to understand past ecological trends Isabelle Domaizon 2021, ⟨10.22498/pages.29.2.102⟩ Article de blog scientifique hal-04698575v1

	Les grands lacs à l'épreuve de l'Anthropocène Jean Marcel Dorioz , O. Anneville , Isabelle Domaizon , Chloé Goulon , Jean Guillard et al. QUAE. Éditions Quae, pp.144, 2020, Enjeux sciences, 9782759235209 Ouvrages hal-04875008v1
	La microbiologie moléculaire au service du diagnostic environnemental. Synthèse de Recherche. Contrat n°1406C0050. Projet de recherche coordonné par : "Observatoire des sols vivants Théodore Bouchez , Anne Laure Blieux , Samuel S. Dequiedt , Isabelle Domaizon , Alexis Dufresne et al. ADEME Agence de l'Environnement et de la Maitrise de l'Energie, 34 p., 2016 Ouvrages (ouvrage de synthèse) hal-01608851v1
	Autour du Lac du Bourget Stéphan Jacquet , Isabelle Domaizon , Jérôme Poulenard , Fabien Arnaud Jacquet et al., pp.270, 2008 Ouvrages halsde-00348196v1

	Les réseaux trophiques microbiens planctoniques diversité, structure, fonctionnement en milieu lacustre Isabelle Domaizon Biodiversité et Ecologie. Université de Savoie, 2010 HDR tel-02823491v1

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Isabelle Domaizon

Publications

Publications

Coupler les données satellitaires aux données de terrain pour comprendre les dynamiques des socio-hydrosystèmes à différents niveaux d'organisation

Prospective des effets du changement climatique sur le lac d’Annecy Tendances et défis à venir concernant les services rendus

eDNA extraction from water samples filtered through Sterivex filter units (NucleoMag DNA/RNA Water Kit - MACHEREY NAGEL). v1

One step RT-ddPCR for probes to target eRNA samples : from sample preparation to droplet reading v1

Modélisation de la dynamique écologique long-terme des lacs profonds périalpins soumis aux changements climatiques et à des apports en nutriments

ddPCR for probes to target eDNA samples : from sample preparation to droplet reading v1

Plankton DNA extraction from Sterivex filter units

In situ pelagic dataset from continuous monitoring: a mesocosm experiment in Lake Geneva (MESOLAC)

Long-term trends in aquatic communities of mesotrophic lakes along a land-use gradient in eastern Canada

Environmental DNA (eDNA) sampling strategies influence estimates of lake fish eDNA concentrations

Advancing Environmental DNA Methods for Monitoring the Reproduction of Quagga and Zebra Mussels in Lakes

Analyse du phytoplancton par l’ADN environnemental : nouveaux outils pour évaluer la qualité écologique des plans d’eau

Omics to Study and Manage Aquatic Environments: A Snapshot From the AquaEcO mics Meeting (Evian‐les‐Bains, 2025)

Unraveling Lake Geneva's hypoxia crisis in the Anthropocene

Multifaceted biodiversity changes of lake microeukaryote communities in response to nutrient enrichment and climate change

The effect of seismic air gun shots on physiology and behaviour of fish lake communities

Increasing carbon burial over recent decades despite re-oligotrophication in deep peri-alpine Lake Aiguebelette, France

An annotated reference library for supporting DNA metabarcoding analysis of aquatic macroinvertebrates in French freshwater environments

Seasonal variations in planktonic food web structure affect stability by shifting the distribution of energy fluxes

Comparison of Metabarcoding and Shotgun Sequencing Confirms the Relevance of Chloroplastic rRNA Genes to Assess Community Structure of Lake Phytoplankton

Environmental Matrices Need Consideration: Insights From Water and Biofilm Environmental DNA for Multi‐Taxonomic Biomonitoring

Expanding the European water Framework Directive indicators to address long-term climate change impacts on lakes using mechanistic lake models

Laying Down the Foundations for Qualitative and Quantitative Freshwater Zooplankton Metabarcoding Surveys

Biodiversity patterns of cyanobacterial oligotypes in lakes and rivers: results of a large-scale metabarcoding survey in the Alpine region

DEEP-C Consortium: Carbon sink or methane source – local to global scale assessment of lentic waters’ role in the climate system

Assessing the relevance of DNA metabarcoding compared to morphological identification for lake phytoplankton monitoring

Past and future climate change effects on the thermal regime and oxygen solubility of four peri-alpine lakes

A quantitative eDNA-based approach to monitor fish spawning in lakes: Application to European perch and whitefish

Investigating the effects of anthropogenic stressors on lake biota using sedimentary DNA

Physico-chemical and high frequency monitoring dataset from mesocosm experiments simulating extreme climate events in lakes

Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities

Do temperature and population size structure influence the quantity of fish eDNA in water?

DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region

Alpine freshwater fish biodiversity assessment: an inter-calibration test for metabarcoding method set up

Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes

Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes

Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential

Past and future climate change effects on thermal regime and oxygen solubility of four peri-alpine lakes

Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments

Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations

Rapid responses of pristine marine planktonic communities in experimental approach to diuron and naphthalene (Juan de Nova Island, Western Indian Ocean)

Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene

Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects

Physico-chemical dataset from an in situ mesocosm experiment simulating extreme climate events in Lake Geneva (MESOLAC)

PaleoEcoGen: Unlocking the power of ancient environmental DNA to understand past ecological trends

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

Short-term dynamics of $Bdellovibrio$ and like organisms in Lake Geneva in response to a simulated climatic extreme event

Evaluating the congruence between DNA ‐based and morphological taxonomic approaches in water and sediment trap samples: Analyses of a 36‐month time series from a temperate monomictic lake

Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

Scientists’ Warning to Humanity: Rapid degradation of the world’s large lakes

In situ pelagic dataset from continuous monitoring: A mesocosm experiment in Lake Geneva (MESOLAC)

The Observatory on LAkes (OLA) database: Sixty years of environmental data accessible to the public

Diversity, spatial distribution and activity of fungi in freshwater ecosystems

Macrophytes moderate the taxonomic and functional composition of phytoplankton assemblages during a nutrient loading experiment

Global distribution of Trebouxiophyceae diversity explored by high‐throughput sequencing and phylogenetic approaches

How does environmental inter-annual variability shape aquatic microbial communities? A 40-year annual record of sedimentary DNA from a boreal lake (Nylandssjön, Sweden)

Assessing pollution of aquatic environments with diatoms' DNA metabarcoding: experience and developments from France Water Framework Directive networks

Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program

Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication

Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: The relative importance of light and thermal stratification

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming

To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments

DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity

Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data

Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

Local human pressures influence gene flow in a hybridizing Daphnia species complex

Molecular microbiology methods for environmental diagnosis

Trophic relationships between metazooplankton communities and their plankton food sources in the Iles Eparses (Western Indian Ocean)

Plankton communities of the five "Iles Eparses" (Western Indian Ocean) considered to be pristine ecosystems

Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA

Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France)

Multi-scale phylogenetic heterogeneity of archaea, bacteria, methanogens and methanotrophs in lake sediments

Evidence for an active rare biosphere within freshwater protists community

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea

Diagnoses des trajectoires écologiques des lacs et leur bassin versant via l’analyse de l’ADN préservé dans les sédiments : Synthèse & Guide d’application pour les diagnoses ADN en paléolimnologie