Jean Cury

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Publications

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A human homolog of SIR2 antiphage proteins mediates immunity via the Toll-like receptor pathway

Delphine Bonhomme , Hugo Vaysset , Eirene Marie Q. Ednacot , Vasco Rodrigues , Yazan Salloum et al.

Science, 2025, 389 (6758), pp.eadr8536. ⟨10.1126/science.adr8536⟩

Article dans une revue hal-05230522v1
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Evolutionary origins of archaeal and eukaryotic RNA-guided RNA modification in bacterial IS110 transposons

Hugo Vaysset , Chance Meers , Jean Cury , Aude Bernheim , Samuel Sternberg

Nature Microbiology, 2025, 10 (1), pp.20-27. ⟨10.1038/s41564-024-01889-2⟩

Article dans une revue hal-05230530v1
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Exploring the diversity of anti-defense systems across prokaryotes, phages and mobile genetic elements

Florian Tesson , Erin Huiting , Linlin Wei , Jie Ren , Matthew Johnson et al.

Nucleic Acids Research, 2025, 53 (1), ⟨10.1093/nar/gkae1171⟩

Article dans une revue hal-05230529v1
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The pathway to resolve dimeric forms distinguishes plasmids from megaplasmids in Enterobacteriaceae

Florian Fournes , Manuel Campos , Jean Cury , Caroline Schiavon , Carine Pagès et al.

Nucleic Acids Research, 2025, 53 (2), pp.gkae1300. ⟨10.1093/nar/gkae1300⟩

Article dans une revue hal-04888819v1
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A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases

Florian Tesson , Rémi Planel , A. Egorov , Héloïse Georjon , Hugo Vaysset et al.

Peer Community Journal, 2024, ⟨10.24072/pcjournal.470⟩

Article dans une revue hal-04600530v2
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Conservation of antiviral systems across domains of life reveals immune genes in humans

Jean Cury , Matthieu Haudiquet , Veronica Hernandez Trejo , Ernest Mordret , Anael Hanouna et al.

Cell Host & Microbe, 2024, 32 (9), pp.1594-1607.e5. ⟨10.1016/j.chom.2024.08.002⟩

Article dans une revue hal-04735152v1
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Viperin immunity evolved across the tree of life through serial innovations on a conserved scaffold

Helena Shomar , Héloïse Georjon , Yanlei Feng , Bismarck Olympio , Marie Guillaume et al.

Nature Ecology & Evolution, 2024, 8 (9), pp.667-1679. ⟨10.1038/s41559-024-02463-z⟩

Article dans une revue hal-04690206v1
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The immune modules conserved across the tree of life: Towards a definition of ancestral immunity

Aude Bernheim , Jean Cury , Enzo Poirier

PLoS Biology, 2024, 22 (7), pp.e3002717. ⟨10.1371/journal.pbio.3002717⟩

Article dans une revue hal-05230525v1
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Integron cassettes commonly integrate into bacterial genomes via widespread non-classical attG sites

Céline Loot , Gael A Millot , Egill Richard , Eloi Littner , Claire Vit et al.

Nature Microbiology, 2024, 9 (1), pp.228-240. ⟨10.1038/s41564-023-01548-y⟩

Article dans une revue pasteur-04384854v1
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dnadna: a deep learning framework for population genetics inference

Théophile Sanchez , Erik Madison Bray , Pierre Jobic , Jérémy Guez , Anne-Catherine Letournel et al.

Bioinformatics, 2023, 39 (1), pp.btac765. ⟨10.1093/bioinformatics/btac765⟩

Article dans une revue hal-03352910v4
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Cultural transmission of reproductive success impacts genomic diversity, coalescent tree topologies and demographic inferences

Jérémy Guez , Guillaume Achaz , François Bienvenu , Jean Cury , Bruno Toupance et al.

Genetics, 2023, 223 (4), pp.iyad007. ⟨10.1093/genetics/iyad007⟩

Article dans une revue hal-03875721v1
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Simulation of bacterial populations with SLiM

Jean Cury , Benjamin C Haller , Guillaume Achaz , Flora Jay

Peer Community Journal, 2022, 2, pp.e7. ⟨10.24072/pcjournal.72⟩

Article dans une revue hal-03152153v3
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Systematic and quantitative view of the antiviral arsenal of prokaryotes

Florian Tesson , Alexandre Hervé , Ernest Mordret , Marie Touchon , Camille D’humières et al.

Nature Communications, 2022, 13 (1), pp.2561. ⟨10.1038/s41467-022-30269-9⟩

Article dans une revue hal-03823827v2

A descriptive study of IgG4-related disease in children and young adults.

Benjamin de Sainte Marie , Mickael Ebbo , Aurélie Grados , Vinciane Rebours , Heloise Reumaux et al.

Autoimmunity Reviews, 2022, Autoimmunity Reviews, 21 (4), pp.103035. ⟨10.1016/j.autrev.2022.103035⟩

Article dans une revue hal-04502819v1
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IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella

Bertrand Néron , Eloi Littner , Matthieu Haudiquet , Amandine Perrin , Jean Cury et al.

Microorganisms, 2022, 10 (4), pp.700. ⟨10.3390/microorganisms10040700⟩

Article dans une revue hal-03655020v1
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Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells

Julie Dauverd -Girault , Charlène Planchenault , Marine C Pons , Caroline Schiavon , Patricia Siguier et al.

Journal of Molecular Biology, 2020, 432 (3), pp.745-761. ⟨10.1016/j.jmb.2019.11.027⟩

Article dans une revue hal-02392007v1
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Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement

Aleksandra Nivina , Maj Svea Grieb , Céline Loot , David Bikard , Jean Cury et al.

Science Advances , 2020, 6 (30), pp.eaay2922. ⟨10.1126/sciadv.aay2922⟩

Article dans une revue hal-03084479v1
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Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation

Théophile Sanchez , Jean Cury , Guillaume Charpiat , Flora Jay

Molecular Ecology Resources, 2020, 21 (8), pp.2645-2660. ⟨10.1111/1755-0998.13224⟩

Article dans une revue hal-02942328v1
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A simple, reproducible and cost- effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach

Camille d'Humières , Marie Touchon , Sara Dion , Jean Cury , Amine Ghozlane et al.

Scientific Reports, 2019, ⟨10.1038/s41598-019-47656-w⟩

Article dans une revue hal-02329655v1
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Host Range and Genetic Plasticity Explain the Coexistence of Integrative and Extrachromosomal Mobile Genetic Elements

Jean Cury , Pedro De Oliveira , Fernando de La Cruz , Eduardo P C Rocha

Molecular Biology and Evolution, 2018, 35 (9), pp.2230-2239. ⟨10.1093/molbev/msy123⟩

Article dans une revue pasteur-02098387v1
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Integrative and conjugative elements and their hosts: composition, distribution and organization

Jean Cury , Marie Touchon , Eduardo P. C. Rocha

Nucleic Acids Research, 2017, 45 (15), pp.8943 - 8956. ⟨10.1093/nar/gkx607⟩

Article dans une revue pasteur-04076019v1
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The chromosomal organization of horizontal gene transfer in bacteria

Pedro H. Oliveira , Marie Touchon , Jean Cury , Eduardo P C Rocha

Nature Communications, 2017, 8 (1), pp.841. ⟨10.1038/s41467-017-00808-w⟩

Article dans une revue hal-04325283v1
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Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic Capacitance

Céline Loot , Aleksandra Nivina , Jean Cury , José Antonio Escudero , Magaly Ducos-Galand et al.

mBio, 2017, 8 (2), pp.e02296-16. ⟨10.1128/mBio.02296-16⟩

Article dans une revue pasteur-01689524v1
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Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain

Amandine Perrin , Elise Larsonneur , Ainsley Nicholson , David Edwards , Kristin Gundlach et al.

Nature Communications, 2017, 8 (1), pp.15483. ⟨10.1038/ncomms15483⟩

Article dans une revue hal-02613118v1
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Identification of protein secretion systems in bacterial genomes

Sophie S. Abby , Jean Cury , Julien Guglielmini , Bertrand Néron , Marie Touchon et al.

Scientific Reports, 2016, 6, ⟨10.1038/srep23080⟩

Article dans une revue pasteur-01374967v1
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Identification and analysis of integrons and cassette arrays in bacterial genomes

Jean Cury , Thomas Jové , Marie Touchon , Bertrand Néron , Eduardo Pc Rocha

Nucleic Acids Research, 2016, 44 (10), pp.4539 - 4550. ⟨10.1093/nar/gkw319⟩

Article dans une revue pasteur-01374968v1
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The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

Marie Touchon , Jean Cury , Eun-Jeong Yoon , Lenka Krizova , Gustavo C Cerqueira et al.

Genome Biology and Evolution, 2014, 6 (10), pp.2866-82. ⟨10.1093/gbe/evu225⟩

Article dans une revue pasteur-01132634v1

Understanding and inferring cultural transmission of reproductive success

Jérémy Guez , Guillaume Achaz , François Bienvenu , Jean Cury , Bruno Toupance et al.

Probabilistic Modeling in Genomics, Mar 2022, Oxford, United Kingdom

Poster de conférence hal-04016758v1
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Evolutionary genomics of conjugative elements and integrons

Jean Cury

Human health and pathology. Université Sorbonne Paris Cité, 2017. English. ⟨NNT : 2017USPCB062⟩

Thèse tel-02130756v1