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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
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DNA methylation-based profiling of horse archaeological remains for age-at-death and castration
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Origin and evolution of the triploid cultivated banana genome
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Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
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A Chromosome-level genome assembly of the European Beech (Fagus sylvatica) reveals anomalies for organelle DNA integration, repeat Content and distribution of SNPs
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Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
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Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France
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Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
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Gene expression and genetic divergence in oak species highlight adaptive genes to soil water constraints
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Chromosome-scale assembly of the yellow mealworm genome
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Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
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Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
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Sequence diversity and evolution of a group of iflaviruses associated with ticks
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Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes
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Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids
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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
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Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant
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Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
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BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
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Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean
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The origins and spread of domestic horses from the Western Eurasian steppes
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
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Historical management of equine resources in France from the Iron Age to the Modern Period
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Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads
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Population genomics of apricots unravels domestication history and adaptive events
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Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria
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Adaptive introgression as a driver of local adaptation to climate in European white oaks
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Virus-host coexistence in phytoplankton through the genomic lens
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Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
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Long-read assembly of the Brassica napus reference genome Darmor-bzh
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BiSCoT: improving large eukaryotic genome assemblies with optical maps
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Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa
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Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
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The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle
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Transposition favors the generation of large effect mutations that may facilitate rapid adaption
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Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica
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Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data
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The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean
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A reference genome for pea provides insight into legume genome evolution
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Amphioxus functional genomics and the origins of vertebrate gene regulation
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Shifting the limits in wheat research and breeding using a fully annotated reference genome
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Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
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Oak genome reveals facets of long lifespan
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Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation
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Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
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De Novo Clustering of Long Reads by Gene from Transcriptomics Data
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Shifting the limits in wheat research and breeding using a fully annotated reference genome
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Complete genome sequence of the facultative methylotroph $Methylobacterium\ extorquens$ TK 0001 isolated from soil in Poland
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Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains
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Genome evolution across 1,011 $Saccharomyces\ cerevisiae$ isolates
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
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The Rosa genome provides new insights into the domestication of modern roses
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A global ocean atlas of eukaryotic genes
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De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
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Hardwood tree genomics: unlocking woody plant biology
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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
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De novo assembly of a new Solanum pennellii accession using nanopore sequencing
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High-quality de novo genome assembly of the Dekkera bruxellensis yeast using Nanopore MinION sequencing
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Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges
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The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies
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High-quality $de\ novo$ genome assembly of the $Dekkera\ bruxellensis$ yeast using Nanopore MinION sequencing
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$de\ novo$ assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
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Extensive recent secondary contacts between four European white oak species
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Survey of the green picoalga Bathycoccus genomes in the global ocean
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Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).
Hélène Falentin
,
Stéphanie-Marie Deutsch
,
Valentin Loux
,
Amal Hammani
,
Julien Buratti
Article dans une revue
hal-02640172v1
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MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data
Mohammed-Amin Madoui
,
Carole Dossat
,
Léo D’agata
,
Jan van Oeveren
,
Edwin van der Vossen
Article dans une revue
hal-04535098v1
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Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.)
Grégoire Le Provost
,
Isabelle Lesur Kupin
,
Céline Lalanne
,
Corinne da Silva
,
Karine Labadie
Article dans une revue
hal-01602423v1
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Rafael Acemel
,
Juan Tena
,
Ibai Irastorza-Azcarate
,
Ferdinand Marlétaz
,
Carlos Gómez-Marín
Article dans une revue
hal-03881440v1
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Genome assembly using Nanopore-guided long and error-free DNA reads
Mohammed-Amin Madoui
,
Stefan Engelen
,
Corinne Cruaud
,
Caroline Belser
,
Laurie Bertrand
Article dans une revue
hal-04361027v1
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Eukaryotic plankton diversity in the sunlit ocean
Noan Le Bescot
,
Ian Probert
,
Margaux Carmichael
,
Julie Poulain
,
Sarah Romac
Article dans une revue
hal-01253979v1
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Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.
Christophe Plomion
,
Jean-Marc Aury
,
Joëlle Amselem
,
Tina Alaeitabar
,
Valérie Barbe
Article dans une revue
hal-01579667v1
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Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?
Pascaline Dumas
,
Fabrice Legeai
,
Claire Lemaitre
,
Erwan Scaon
,
Marion Orsucci
Article dans une revue
hal-01208780v2
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii
Valentin Loux
,
Mahendra Mariadassou
,
Sintia Almeida
,
Hélène Chiapello
,
Amal Hammani
Article dans une revue
hal-01142363v1
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Recurrent domestication by Lepidoptera of genes from their parasites mediated by Bracoviruses
Laila Gasmi
,
Hélène Boulain
,
Jérémy Gauthier
,
Aurélie Hua-Van
,
Karine Musset
Article dans une revue
hal-01220732v1
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Recurrent DNA virus domestication leading to different parasite virulence strategies
Apolline Pichon
,
Annie Bézier
,
Serge Urbach
,
Jean-Marc Aury
,
Véronique Jouan
Article dans une revue
hal-01318262v1
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
Isabelle Lesur
,
Grégoire G. Le Provost
,
Pascal Bento
,
Corinne da Silva
,
Jean-Charles Leplé
Article dans une revue
hal-02285504v1
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Mapping the epigenetic basis of complex traits
Sandra Cortijo
,
Rene Wardenaar
,
Maria Colomé-Tatché
,
Arthur Gilly
,
Mathilde Etcheverry
Article dans une revue
hal-01193838v1
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TE-Tracker: systematic identification of transposition events through whole-genome resequencing
Arthur Gilly
,
Mathilde Etcheverry
,
Mohammed-Amin Madoui
,
Julie Guy
,
Leandro Quadrana
Article dans une revue
hal-03170927v1
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The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants
Betina M Porcel
,
France Denoeud
,
Fred Opperdoes
,
Benjamin Noel
,
Mohammed-Amine Madoui
Article dans une revue
hal-04402160v1
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Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Boulos Chalhoub
,
France Denoeud
,
Shengyi Liu
,
Isobel A. P. Parkin
,
Haibao Tang
Article dans une revue
hal-01208705v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.
Camille Berthelot
,
Frédéric Brunet
,
Domitille Chalopin
,
Amélie Juanchich
,
Maria Bernard
Article dans une revue
hal-01193812v1
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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
France Denoeud
,
Lorenzo Carretero-Paulet
,
Alexis Dereeper
,
Gaëtan Droc
,
Romain Guyot
Article dans une revue
hal-02641562v1
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Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data
Adriana A. Alberti
,
Caroline Belser
,
Stefan Engelen
,
Laurie Bertrand
,
Celine Orvain
Article dans une revue
hal-02503091v1
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A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.
Sophia S. Ahmed
,
J. Mark Cock
,
Eugenie Pessia
,
Remy Luthringer
,
Alexandre Cormier
Article dans une revue
hal-01132642v1
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Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus
Florian Humily
,
Gregory K. Farrant
,
Dominique Marie
,
Frédéric Partensky
,
Sophie Mazard
Article dans une revue
hal-01100993v1
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Structural and Functional Partitioning of Bread Wheat Chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
Article dans une revue
hal-02638189v1
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Genome-defence small RNAs exapted for epigenetic mating-type inheritance.
Deepankar Pratap Singh
,
Baptiste Saudemont
,
Gérard Guglielmi
,
Olivier Arnaiz
,
Jean-François Goût
Article dans une revue
hal-01015302v1
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Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
Jean-François Flot
,
Boris Hespeels
,
Xiang Li
,
Benjamin Noel
,
Irina Arkhipova
Article dans une revue
hal-01282538v1
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Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.
Jonas Collén
,
Betina Porcel
,
Wilfrid Carré
,
Steven G Ball
,
Cristian Chaparro
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩
Article dans une revue
hal-01073830v1
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The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium
J. Mark Cock
,
Lieven Sterck
,
Sophia Ahmed
,
Andrew E. Allen
,
Grigoris Amoutzias
Article dans une revue
hal-02649287v1
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.
Angélique d'Hont
,
France Denoeud
,
Jean-Marc Aury
,
Franc-Christophe Baurens
,
Françoise Carreel
Article dans une revue
hal-00855582v1
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The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.
Olivier Arnaiz
,
Nathalie Mathy
,
Céline Baudry
,
Sophie Malinsky
,
Jean-Marc Aury
Article dans une revue
hal-00759182v1
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The genome of Theobroma cacao.
Xavier Argout
,
Jerome Salse
,
Jean-Marc Aury
,
Mark J Guiltinan
,
Gaetan Droc
Article dans une revue
hal-00855922v1
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In Silico Survey of the Mitochondrial Protein Uptake and Maturation Systems in the Brown Alga Ectocarpus siliculosus
Ludovic Delage
,
Catherine Leblanc
,
Pi Nyvall Collén
,
Bernhard Gschloessl
,
Marie-Pierre Oudot
Article dans une revue
hal-01806425v1
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Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.
France Denoeud
,
Michaël Roussel
,
Benjamin Noel
,
Ivan Wawrzyniak
,
Corinne da Silva
Article dans une revue
inserm-00617212v1
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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
Francis Martin
,
Annegret Kohler
,
Claude Murat
,
Raffaella Balestrini
,
Pedro M Coutinho
Article dans une revue
cea-00907731v1
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The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae
J. Mark Cock
,
Lieven Sterck
,
Pierre Rouzé
,
Delphine Scornet
,
Andrew E. Allen
Article dans une revue
cea-00906990v1
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Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
France Denoeud
,
Simon Henriet
,
Sutada Mungpakdee
,
Jean-Marc Aury
,
Corinne da Silva
Article dans une revue
halsde-00544648v1
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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
L. Duret
,
J. Cohen
,
C. Jubin
,
P. Dessen
,
J.-F. Gout
Article dans une revue
hal-00428190v1
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Translational control of intron splicing in eukaryotes
Olivier Jaillon
,
Khaled Bouhouche
,
Jean-François Gout
,
Jean-Marc Aury
,
Benjamin Noel
Article dans une revue
cea-00945555v1
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The genome sequence of the model ascomycete fungus Podospora anserina
Eric Espagne
,
Olivier Lespinet
,
Fabienne Malagnac
,
Corinne da Silva
,
Olivier Jaillon
Article dans une revue
hal-04011226v1
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Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
Pierre Abad
,
Jerome Gouzy
,
Jean-Marc Aury
,
Philippe Castagnone-Sereno
,
Etienne Danchin
Article dans une revue
hal-01189285v1
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High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
Jean-Marc Aury
,
Corinne Cruaud
,
Valérie Barbe
,
Odile Rogier
,
Sophie Mangenot
Article dans une revue
hal-02659381v1
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The genome sequence of the model ascomycete fungus Podospora anserina.
Eric Espagne
,
Olivier Lespinet
,
Fabienne Malagnac
,
Corinne da Silva
,
Olivier Jaillon
Article dans une revue
hal-00286300v1
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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.
L. Duret
,
Jean Cohen
,
Claire Jubin
,
Philippe Dessen
,
Jean-François Goût
Article dans une revue
hal-00282468v1
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Annotating genomes with massive-scale RNA sequencing
France Denoeud
,
Jean-Marc Aury
,
Corinne da Silva
,
Benjamin Noel
,
Odile Rogier
Article dans une revue
hal-02664963v1
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Olivier Jaillon
,
Jean-Marc Aury
,
Benjamin Noel
,
Alberto Policriti
,
Christian Clepet
Article dans une revue
inria-00180136v1
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Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia
Jean-Marc Aury
,
Olivier Jaillon
,
* Laurent Duret
,
Benjamin Noel
,
Claire Jubin
Article dans une revue
hal-00090904v1
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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.
Jean-Marc Aury
,
Olivier Jaillon
,
L. Duret
,
Benjamin Noel
,
Claire Jubin
Article dans une revue
hal-00132091v1
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Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
Frédéric Brunet
,
Hugues Roest Crollius
,
Mathilde Paris
,
Jean-Marc Aury
,
Patricia Gibert
Article dans une revue
hal-02660787v1
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Whole genome sequence comparisons and "full-lenght" cDNA sequences: a combined approach to evaluate and improve Arabidopdid genome annotation
V. Castelli
,
J.M. Aury
,
Olivier Jaillon
,
Patrick Wincker
,
Christian Clepet
Genome Research, 2004, 14 (3), pp.406-413
Article dans une revue
hal-02672600v1
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Genome duplication in the teleost fish Tretraodon nigroviridis reveals the early vertebrate proto-karyotype
Olivier Jaillon
,
J.M. Aury
,
F. Brunet
,
J.L. Petit
,
N. Stange-Thomann
Nature, 2004, 431, pp.946-957
Article dans une revue
hal-02681415v1
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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
O. Jaillon
,
J.-M. Aury
,
F. Brunet
,
J.L. Petit
,
N. Stange-Thomann
Article dans une revue
hal-00427605v1
|