
Jérémie Bourdon
67
Documents
Publications
Publications
Inferring Boolean Networks from Single-Cell Human Embryo Datasets19th International Symposium on Bioinformatics Research and Applications, ISBRA 2023, Oct 2023, Wrocław, Poland. pp.431-441, ⟨10.1007/978-981-99-7074-2_34⟩
Communication dans un congrès
hal-04601243
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Contributions des entrées sur les sorties pour les réseaux métaboliques sur génomes entiers: performances et utilisation pour des études en nutrition humaineCARI 2022 - Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées, Oct 2022, Yaoundé, Cameroun. pp.1-12
Communication dans un congrès
hal-03689107
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Regulation and signalization graph assembly through Linked Open DataJOBIM 2017, Jul 2017, Lille, France
Communication dans un congrès
hal-01768420
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A Logic for Checking the Probabilistic Steady-State Properties of Reaction NetworksIJCAI workshop BAI: Bioinformatics and Artificial Intelligence, 2015, Buenos Aeres, Argentina
Communication dans un congrès
hal-01196598
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OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques13th International Conference on Computational Methods in Systems Biology CMSB 2015, Sep 2015, Nantes, France. pp.279-281, ⟨10.1007/978-3-319-23401-4_23⟩
Communication dans un congrès
hal-02464859
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Multivariate Normal Approximation for the Stochastic Simulation Algorithm: limit theorem and applicationsSASB - 5th International Workshop on Static Analysis and Systems Biology, 2014, Munchen, Germany
Communication dans un congrès
hal-01079768
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Generating discrete planes with substitutionsWORDS - 9th International Conference on Words - 2013, Sep 2013, Turku, Finland
Communication dans un congrès
hal-00853758
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Systems biology approaches at cellular level in the model organism Ectocarpus siliculosus to better understand brown algal physiologyEsil 2012: algal post-genomics, Apr 2012, Roscoff, France
Communication dans un congrès
hal-00760640
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Large deviation properties for patternsLSD&LAW 2012, Simon J. Puglisi and Golnaz Badkobeh, Feb 2012, Londres, United Kingdom
Communication dans un congrès
hal-00758251
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Average-case analysis methods dedicated to the study of Biological NetworksMoscow Conference on Computational Molecular Biology (MCCMB) 2011, Jul 2011, Moscou, Russia
Communication dans un congrès
hal-01176716
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Complex update strategies for Probabilistic Boolean Networks7th Workshop on Computational Systems Biology, Jun 2010, Luxembourg, France. pp.4
Communication dans un congrès
hal-00480366
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A statistical method for PWM clusteringMoscow Conference on Computational Molecular Biology, Jul 2009, Moscou, Russia. pp.59-60
Communication dans un congrès
hal-00415980
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La calculette métabolique": une approche de modélisation biochimique pour explorer les contraintes au sein du métabolisme des mammifères3. Journées d’Animation Scientifique du Département de Physiologie Animale et Systèmes d’Elevage, Oct 2009, Tours, France
Communication dans un congrès
hal-02758027
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Distribution of Solutions of Multi-objective Assignment Problem and Links with the Efficiency of Solving Methods.GOR 2007, Sep 2007, Saarbrücken, Germany
Communication dans un congrès
hal-00465762
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Distribution des solutions du problème d'affectation multi-objectif et relation avec l'efficacité des algorithmes de résolutionFRANCORO V / ROADEF 2007, Feb 2007, Grenoble, France
Communication dans un congrès
hal-00465766
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Pattern Matching Statistics on Correlated sourcesLATIN 2006, Mar 2006, Chile. pp.224-237
Communication dans un congrès
hal-00461975
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Statistical Properties of Similarity Score FunctionsFourth Colloquium on Mathematics and Computer Science Algorithms, Trees, Combinatorics and Probabilities, 2006, Nancy, France. pp.129-140, ⟨10.46298/dmtcs.3502⟩
Communication dans un congrès
hal-01184706
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The limit of cell specification concept: a lesson from scRNA-Seq on early human developmentJOBIM 2019, Jul 2019, Nantes, France
Poster de conférence
inserm-02164425
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Exploring the metabolic flexibility of the mammary gland of dairy cows through flux-balance analysisMeeting of the Animal Science Modelling Group, Jul 2013, Indianapolis, United States. , Canadian Journal of Animal Science, 93 (4), 2013, Canadian Journal of Animal Science
Poster de conférence
hal-01210552
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A generic stoichiometric model to analyse the metabolic flexibility of the mammary gland in lactating dairy cowsINRA. 7. International Workshop on Modelling Nutrient Digestion and Utilisation in Farm Animals, Sep 2009, Paris, France. Wageningen Academic Publishers, pp.279-288, 2010, Modelling nutrient digestion and utilisation in farm animals
Poster de conférence
hal-02758319
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Logic and Linear Programs to Understand Cancer ResponseLiò P., Zuliani P. (eds) Automated Reasoning for Systems Biology and Medicine. Computational Biology, vol 30. Springer, Cham, pp.191-213, 2019, ⟨10.1007/978-3-030-17297-8_7⟩
Chapitre d'ouvrage
hal-02467018
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Modélisation et prédiction du fonctionnement et de la dynamique des écosystèmesLa génomique environnemetale : la révolution du séquençage à haut débit, 2016
Chapitre d'ouvrage
hal-01777358
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Modeling and predicting behaviors and dynamics of ecosystemsInsight on environmental genomics, the high-throughput sequencing revolution, 2016
Chapitre d'ouvrage
hal-03823723
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XII Des données haut-débit à la modélisation des écosystèmesProspective Génomique Environnementale, , pp.83-89, 2013
Chapitre d'ouvrage
hal-01176570
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Probabilistic Approaches for Investigating Biological NetworksMourad Elloumi, Albert Y. Zomaya. Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, Wiley, pp.1066, 2011
Chapitre d'ouvrage
hal-00531568
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A generic stoichiometric model to analyse the metabolic flexibility of the mammary gland in lactating dairy cowsD. Sauvant, J. Van Milgen, P. Faverdin and N. Friggens. Modelling nutrient digestion and utilization in farm animals, Wageningen Academic Publishers, 2010, 978-90-8686-156-9
Chapitre d'ouvrage
inria-00538138
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Computing Diverse Boolean Networks from Phosphoproteomic Time Series Datapp.59-74, 2018
Ouvrages
hal-01988432
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Computational Methods in Systems Biology - 13th International Conference, CMSB 2015, Nantes, France, September 16-18, 2015, ProceedingsOlivier F. Roux and Jérémie Bourdon. Springer, 9308, 2015, Lecture Notes in Computer Science, 978-3-319-23400-7. ⟨10.1007/978-3-319-23401-4⟩
Ouvrages
hal-01371899
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Selected papers from the Computational Methods in Systems Biology 2015 conferenceBioSystems, 149, pp.1-2, 2016, ⟨10.1016/j.biosystems.2016.10.006⟩
N°spécial de revue/special issue
hal-02469955
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Sources Probabilistes: des séquences aux systèmesBio-informatique [q-bio.QM]. Université de Nantes, 2012
HDR
tel-00776681
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POGG: Integrating qualitative and quantitative data of macromolecular networks. A probabilistic toolbox2007
Autre publication scientifique
hal-00445610
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