Jérémie Bourdon
Publications
Publications
Inferring Boolean Networks from Single-Cell Human Embryo Datasets19th International Symposium on Bioinformatics Research and Applications, ISBRA 2023, Oct 2023, Wrocław, Poland. pp.431-441, ⟨10.1007/978-981-99-7074-2_34⟩ |
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Contributions des entrées sur les sorties pour les réseaux métaboliques sur génomes entiers: performances et utilisation pour des études en nutrition humaineCARI 2022 - Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées, Oct 2022, Yaoundé, Cameroun. pp.1-12 |
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Regulation and signalization graph assembly through Linked Open DataJOBIM 2017, Jul 2017, Lille, France |
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A Logic for Checking the Probabilistic Steady-State Properties of Reaction NetworksIJCAI workshop BAI: Bioinformatics and Artificial Intelligence, 2015, Buenos Aeres, Argentina |
OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques13th International Conference on Computational Methods in Systems Biology CMSB 2015, Sep 2015, Nantes, France. pp.279-281, ⟨10.1007/978-3-319-23401-4_23⟩ |
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Multivariate Normal Approximation for the Stochastic Simulation Algorithm: limit theorem and applicationsSASB - 5th International Workshop on Static Analysis and Systems Biology, 2014, Munchen, Germany |
Generating discrete planes with substitutionsWORDS - 9th International Conference on Words - 2013, Sep 2013, Turku, Finland |
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Systems biology approaches at cellular level in the model organism Ectocarpus siliculosus to better understand brown algal physiologyEsil 2012: algal post-genomics, Apr 2012, Roscoff, France |
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Large deviation properties for patternsLSD&LAW 2012, Simon J. Puglisi and Golnaz Badkobeh, Feb 2012, Londres, United Kingdom |
Average-case analysis methods dedicated to the study of Biological NetworksMoscow Conference on Computational Molecular Biology (MCCMB) 2011, Jul 2011, Moscou, Russia |
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Complex update strategies for Probabilistic Boolean Networks7th Workshop on Computational Systems Biology, Jun 2010, Luxembourg, France. pp.4 |
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A statistical method for PWM clusteringMoscow Conference on Computational Molecular Biology, Jul 2009, Moscou, Russia. pp.59-60 |
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La calculette métabolique": une approche de modélisation biochimique pour explorer les contraintes au sein du métabolisme des mammifères3. Journées d’Animation Scientifique du Département de Physiologie Animale et Systèmes d’Elevage, Oct 2009, Tours, France |
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Distribution des solutions du problème d'affectation multi-objectif et relation avec l'efficacité des algorithmes de résolutionFRANCORO V / ROADEF 2007, Feb 2007, Grenoble, France |
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Distribution of Solutions of Multi-objective Assignment Problem and Links with the Efficiency of Solving Methods.GOR 2007, Sep 2007, Saarbrücken, Germany |
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Pattern Matching Statistics on Correlated sourcesLATIN 2006, Mar 2006, Chile. pp.224-237 |
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Statistical Properties of Similarity Score FunctionsFourth Colloquium on Mathematics and Computer Science Algorithms, Trees, Combinatorics and Probabilities, 2006, Nancy, France. pp.129-140, ⟨10.46298/dmtcs.3502⟩ |
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The limit of cell specification concept: a lesson from scRNA-Seq on early human developmentJOBIM 2019, Jul 2019, Nantes, France |
Exploring the metabolic flexibility of the mammary gland of dairy cows through flux-balance analysisMeeting of the Animal Science Modelling Group, Jul 2013, Indianapolis, United States. , Canadian Journal of Animal Science, 93 (4), 2013, Canadian Journal of Animal Science |
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A generic stoichiometric model to analyse the metabolic flexibility of the mammary gland in lactating dairy cowsINRA. 7. International Workshop on Modelling Nutrient Digestion and Utilisation in Farm Animals, Sep 2009, Paris, France. Wageningen Academic Publishers, pp.279-288, 2010, Modelling nutrient digestion and utilisation in farm animals |
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Logic and Linear Programs to Understand Cancer ResponseLiò P., Zuliani P. (eds) Automated Reasoning for Systems Biology and Medicine. Computational Biology, vol 30. Springer, Cham, pp.191-213, 2019, ⟨10.1007/978-3-030-17297-8_7⟩ |
Modeling and predicting behaviors and dynamics of ecosystemsInsight on environmental genomics, the high-throughput sequencing revolution, 2016 |
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Modélisation et prédiction du fonctionnement et de la dynamique des écosystèmesLa génomique environnemetale : la révolution du séquençage à haut débit, 2016 |
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XII Des données haut-débit à la modélisation des écosystèmesProspective Génomique Environnementale, , pp.83-89, 2013 |
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Probabilistic Approaches for Investigating Biological NetworksMourad Elloumi, Albert Y. Zomaya. Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, Wiley, pp.1066, 2011 |
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A generic stoichiometric model to analyse the metabolic flexibility of the mammary gland in lactating dairy cowsD. Sauvant, J. Van Milgen, P. Faverdin and N. Friggens. Modelling nutrient digestion and utilization in farm animals, Wageningen Academic Publishers, 2010, 978-90-8686-156-9 |
Computing Diverse Boolean Networks from Phosphoproteomic Time Series Datapp.59-74, 2018 |
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Computational Methods in Systems Biology - 13th International Conference, CMSB 2015, Nantes, France, September 16-18, 2015, ProceedingsOlivier F. Roux and Jérémie Bourdon. Springer, 9308, 2015, Lecture Notes in Computer Science, 978-3-319-23400-7. ⟨10.1007/978-3-319-23401-4⟩ |
Selected papers from the Computational Methods in Systems Biology 2015 conferenceBioSystems, 149, pp.1-2, 2016, ⟨10.1016/j.biosystems.2016.10.006⟩ |
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Sources Probabilistes: des séquences aux systèmesBio-informatique [q-bio.QM]. Université de Nantes, 2012 |
POGG: Integrating qualitative and quantitative data of macromolecular networks. A probabilistic toolbox2007 |