jerome dorignac

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Publications

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Exit times of totally asymmetric simple exclusion processes

Jerome Dorignac , Fred Geniet , Estelle Pitard
Physical Review E , 2024, 109 (3), pp.034116. ⟨10.1103/physreve.109.034116⟩
Article dans une revue hal-04543017 v1
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TASEP Exit Times

Jérôme Dorignac , Fred Geniet , Estelle Pitard
Physical Review E , 2023, 109 (3), pp.034116. ⟨10.1103/PhysRevE.109.034116⟩
Article dans une revue hal-04279672 v1
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Physical modeling of ribosomes along messenger RNA: estimating kinetic rates from ribosome profiling experiments with a ballistic model

Carole Chevalier , Jerome Dorignac , Yahaya Ibrahim , Armelle Choquet , Alexandre David et al.
PLoS Computational Biology, 2023, 19 (10), pp.e1011522. ⟨10.1371/journal.pcbi.1011522⟩
Article dans une revue hal-03832368 v1
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Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor

Ruben Perez-Carrasco , Maria-José Franco-Oñate , Jean-Charles Walter , Jerome Dorignac , Frederic Geniet et al.
Science Advances , 2022, 8 (12), pp.eabl8112. ⟨10.1126/sciadv.abl8112⟩
Article dans une revue hal-03351194 v1
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Supercoiled DNA and non-equilibrium formation of protein complexes: A quantitative model of the nucleoprotein ParBS partition complex

Jean-Charles Walter , Thibaut Lepage , Jerome Dorignac , Frédéric Geniet , Andrea Parmeggiani et al.
PLoS Computational Biology, 2021, 17 (4), pp.e1008869. ⟨10.1371/journal.pcbi.1008869⟩
Article dans une revue hal-03438826 v1
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Modelling the effect of ribosome mobility on the rate of protein synthesis

Olivier Dauloudet , Izaak Neri , Jean-Charles Walter , Jérôme Dorignac , Frédéric Geniet et al.
European Physical Journal E: Soft matter and biological physics, 2021, 44, pp.19. ⟨10.1140/epje/s10189-021-00019-8⟩
Article dans une revue hal-02989969 v1
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Phase separation of polymer-bound particles induced by loop-mediated one dimensional effective long-range interactions

Gabriel David , Jean-Charles Walter , Chase P. Broedersz , Jerome Dorignac , Frederic Geniet et al.
Physical Review Research, 2020, 2 (3), ⟨10.1103/PhysRevResearch.2.033377⟩
Article dans une revue hal-02950974 v1
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Modeling supercoiled DNA interacting with an anchored cluster of proteins: towards a quantitative estimation of chromosomal DNA supercoiling

Jean-Charles Walter , Thibaut Lepage , Jérôme Dorignac , Frédéric Geniet , Andrea Parmeggiani et al.
International Journal of Antimicrobial Agents, 2020, 56 (6), pp.106153. ⟨10.48550/arXiv.2002.00111⟩
Article dans une revue hal-04851307 v1
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Physical modeling of a sliding clamp mechanism for the spreading of ParB at short genomic distance from bacterial centromere sites

Jean-Charles Walter , Jerome Rech , Nils-Ole Walliser , Jerome Dorignac , Frederic Geniet et al.
iScience, 2020, 23 (12), pp.101861. ⟨10.1016/j.isci.2020.101861⟩
Article dans une revue hal-03052753 v2
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Looping and clustering model for the organization of protein-DNA complexes on the bacterial genome

Jean-Charles Walter , Nils-Ole Walliser , Gabriel David , Jerome Dorignac , Frederic Geniet et al.
New Journal of Physics, 2018, 20, pp.035002. ⟨10.1088/1367-2630/aaad39⟩
Article dans une revue hal-01561696 v1
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A conserved mechanism drives partition complex assembly on bacterial chromosomes and plasmids

Roxanne Debaugny , Aurore Sanchez , Jérôme Rech , Delphine Labourdette , Jerome Dorignac et al.
Molecular Systems Biology, 2018, 14 (11), pp.e8516. ⟨10.15252/msb.20188516⟩
Article dans une revue hal-01926457 v1
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Surfing on protein waves: proteophoresis as a mechanism for bacterial genome partitioning

Jean-Charles Walter , Jerome Dorignac , Vladimir Lorman , Jérôme Rech , Jean-Yves Bouet et al.
Physical Review Letters, 2017, 119 (2), pp.028101. ⟨10.1103/PhysRevLett.119.028101⟩
Article dans une revue hal-01493262 v1

Growth of surface wind-waves in water of finite depth. A theoretical approach

Pablo Montalvo , Jerome Dorignac , Miguel Manna , Christian Kharif , Hubert Branger
Coastal Engineering, 2013, 77, pp.49-56. ⟨10.1016/j.coastaleng.2013.02.008⟩
Article dans une revue hal-00749901 v1
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Energy measurement in nonlinearly coupled nanomechanical modes

Alexei Gaidarzhy , Jerome Dorignac , Guiti Zolfagharkhani , Matthias Imboden , Pritiraj Mohanty
Applied Physics Letters, 2011, 98, pp.264106. ⟨10.1063/1.3604797⟩
Article dans une revue hal-00628025 v1

Generation and dynamics of quadratic birefringent spatial gap solitons

Petrutza Anghel-Vasilescu , Jérôme Dorignac , Frédéric Geniet , Jérôme Léon , Abdelmajid Taki
Physical Review A : Atomic, molecular, and optical physics [1990-2015], 2011, 83 (4), pp.043836. ⟨10.1103/PhysRevA.83.043836⟩
Article dans une revue hal-00628026 v1

Transfer of Bose-Einstein condensates through discrete breathers in an optical lattice.

Holger Hennig , Jerome Dorignac , David K. Campbell
Physical Review A : Atomic, molecular, and optical physics [1990-2015], 2010, 82 (05), pp.053604. ⟨10.1103/PhysRevA.82.053604⟩
Article dans une revue hal-00491003 v1

Nonlinear supratransmission in multicomponent systems

Petrutza Anghel-Vasilescu , Jerome Dorignac , Frédéric Geniet , Jerome Leon , Majid Taki
Physical Review Letters, 2010, 105, pp.074101. ⟨10.1103/PhysRevLett.105.074101⟩
Article dans une revue hal-00510988 v1

Arbitrary distribution and nonlinear modal interaction in coupled nanomechanical resonators

Jerome Dorignac , A. Gaidarzhy , P. Mohanty
Journal of Applied Physics, 2009, 105 (10), pp.103520-103520-7. ⟨10.1063/1.3132088⟩
Article dans une revue hal-00430445 v1

Response Spectrum of Coupled Nanomechanical Resonators

Jerome Dorignac , A. Gaidarzhy , P. Mohanty
Journal of Applied Physics, 2008, 104 (7), pp.073532-073532-12. ⟨10.1063/1.2996031⟩
Article dans une revue hal-00378494 v1

Discrete breathers in nonlinear Schrödinger hypercubic lattices with arbitrary power nonlinearity

Jerome Dorignac , J. Zhou , Dk. Campbell
Physica D: Nonlinear Phenomena, 2008, 237 (4), pp.486-504. ⟨10.1016/j.physd.2007.09.018⟩
Article dans une revue istex hal-00378483 v1

Dynamical Response of Nanomechanical Oscillators in Immiscible Viscous Fluid for In Vitro Biomolecular Recognition

Jerome Dorignac , Agnieszka Kalinowski , Shyamsunder Erramilli , Pritiraj Mohanty
Physical Review Letters, 2006, 96 (18), ⟨10.1103/PhysRevLett.96.186105⟩
Article dans une revue hal-01531181 v1

Signature of (anti)cooperativity in the stochastic fluctuations of small systems: application to the bacterial flagellar motor

John Palmeri , Maria-José Franco-Oñate , Nils-Ole Walliser , Andrea Parmeggiani , Jérôme Dorignac et al.
International Physics of Living Systems (IPOLS) 2023, Daniel Goldman, Georgia Tech, Aug 2023, Atlanta, United States
Communication dans un congrès hal-04890444 v1

Kinetics of stator recruitment and release in the bacterial flagellar motor

Maria-José Franco-Oñate , Ruben Perez-Carrasco , Jean-Charles Walter , Jerome Dorignac , Frederic Geniet et al.
International Physics of Living Systems (IPOLS) 2022, CNRS, May 2022, Montpellier, France
Communication dans un congrès hal-04901816 v1

Phase separation of polymer-bound particles induced by loop-mediated 1D effective long-range interactions

Gabriel David , Jean-Charles Walter , Chase Broedersz , Jerome Dorignac , Frederic Geniet et al.
Statistical Physics and Low Dimensional Systems, Martin Michael Müller, Oct 2020, Pont-à-Mousson, France
Communication dans un congrès hal-04890693 v1

Effective long range interactions generated by polymer (DNA) fluctuations induce bound particle (protein) phase separation

Gabriel David , Jean-Charles Walter , Chase Broedersz , Jerome Dorignac , Frederic Geniet et al.
APS March Meeting 2019, APS, Mar 2019, Boston (MA), United States
Communication dans un congrès hal-04894725 v1

Séparation de phase des à protéines liées l’ADN

Gabriel David , Jean-Charles Walter , Chase Broedersz , Jerome Dorignac , Frederic Geniet et al.
GDR ADN Annual meeting, GDR ADN, Mar 2019, Lyon, France
Communication dans un congrès hal-04894746 v1

Nonlinear supratransmission revisited

Jerome Dorignac
Nonlinear Waves in Optics NWO11, Jun 2011, France
Communication dans un congrès hal-00819807 v1

Supratransmission non linéaire dans les systèmes à plusieurs champs.

Jerome Dorignac
Non-linéarités, fluctuations et hétérogénéités, Oct 2010, France
Communication dans un congrès hal-00819816 v1
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Physical Modeling of Translation with a Ballistic Model: Application to the Estimation of the Kinetic Parameters from Ribosome Sequencing Experiments

Carole Chevalier , Jerome Dorignac , Yahaya Ibrahim , Armelle Choquet , Alexandre David et al.
Annual Meeting of the International Physics of Living Systems (iPoLS) Network, May 2022, Montpellier, France
Poster de conférence hal-03691814 v1

Looping and Clustering: a statistical physics approach to protein-DNA complexes in bacteria

Jean-Charles Walter , Nils-Ole Walliser , Gabriel David , Jerome Dorignac , Frederic Geniet et al.
EMBO | EMBL Symposium: Cellular Mechanisms Driven by Liquid Phase Separation, May 2018, Heidelberg, Germany
Poster de conférence hal-01939915 v1
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Modelling Spatio-temporal Dynamic of Ribosome During Translation

Carole Chevalier , Jean-Charles Walter , John Palmeri , Andrea Parmeggiani , Frederic Geniet et al.
7ème Journées Scientifiques du LabEx NUMEV, Nov 2018, Montpellier, France
Poster de conférence hal-01950298 v1

Physical modeling of active bacterial DNA segregation

Jean-Charles Walter , Jean-Yves Bouet , Jerome Dorignac , Frederic Geniet , V. Lorman et al.
6ème Journées Scientifiques du LabEx NUMEV, Nov 2017, Montpellier, France
Poster de conférence hal-01950263 v1

Physical modeling of active bacterial DNA segregation

Jean-Charles Walter , Jean-Yves Bouet , Jerome Dorignac , Frederic Geniet , Vladimir Lorman et al.
Défi Inphyniti Workshop (CNRS, MI), Nov 2016, Paris, France
Poster de conférence hal-01950249 v1

Physical modeling of active bacterial DNA segregation

Jean-Charles Walter , Jean-Yves Bouet , Jerome Dorignac , Frederic Geniet , Vladimir Lorman et al.
5ème Journées Scientifiques du LabEx NUMEV, Oct 2016, Montpellier, France
Poster de conférence hal-01950151 v1

3d Architecture of a Bacterial DNA Segregation Apparatus

Jean-Yves Bouet , Jerome Dorignac , Frederic Geniet , Vladimir Lorman , Marcelo Nollmann et al.
4ème Journée Scientifique du LabEx NUMEV, Jul 2015, Montpellier, France
Poster de conférence hal-01950016 v1

Architecture of a Bacterial DNA Segregation Apparatus : Experiments and Modeling

Jean-Yves Bouet , Jerome Dorignac , Frederic Geniet , Vladimir Lorman , Marcelo Nollmann et al.
3ème Journée Scientifique du LabEx NUMEV, Jul 2014, Montpellier, France
Poster de conférence hal-01948428 v1