Jerome MURIENNE

Documents

Researcher identifiers

jerome-murienne
0000-0003-1474-7829
Google Scholar : https://scholar.google.com/citations?hl=en&user=Uc-eBGMAAAAJ&view_op=list_works&sortby=pubdate
IdRef : 111180228

Presentation

Publications

	Bringing traits back into the equation: A roadmap to understand species redistribution Lise Comte , Romain Bertrand , Sarah Diamond , Lesley Lancaster , Malin Pinsky Global Change Biology, 2024, 30 (4), ⟨10.1111/gcb.17271⟩ Journal articles hal-04546169v1
	Ants of French Guiana: 16S rRNA sequence dataset Gaëtan Rongier , Audrey Sagne , Sandrine Etienne , Frederic Petitclerc , Gaelle Jaouen Biodiversity Data Journal, 2023, 11, pp.e91577. ⟨10.3897/bdj.11.e91577⟩ Journal articles hal-04182572v1
	Pangolin genomes offer key insights and resources for the world’s most trafficked wild mammals Sean Heighton , Rémi Allio , Jérôme Murienne , Jordi Salmona , Hao Meng Molecular Biology and Evolution, 2023, 40 (10), pp.msad190. ⟨10.1093/molbev/msad190⟩ Journal articles hal-04251934v1
	Inferring functional diversity from environmental DNA metabarcoding Céline Condachou , Tristan Milhau , Jérôme Murienne , Sébastien Brosse , Sébastien Villéger Environmental DNA, 2023, 5 (5), pp.934-944. ⟨10.1002/edn3.391⟩ Journal articles hal-04269097v1
	Environmental DNA reveals a mismatch between diversity facets of Amazonian fishes in response to contrasting geographical, environmental and anthropogenic effects Opale Coutant , Céline Jézéquel , Karel Mokany , Isabel Cantera , Raphaël Covain Global Change Biology, 2023, 29 (7), pp.1741-1758. ⟨10.1111/gcb.16533⟩ Journal articles hal-04060932v1
	Biodiversity and vector‐borne diseases: Host dilution and vector amplification occur simultaneously for Amazonian leishmaniases Arthur Kocher , Josselin Cornuault , Jean‐charles Gantier , Sophie Manzi , Agathe Chavy Molecular Ecology, 2022, ⟨10.1111/mec.16341⟩ Journal articles hal-03576716v1
	Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem Benjamin Flück , Laëtitia Mathon , Stéphanie Manel , Alice Valentini , Tony Dejean Scientific Reports, 2022, 12 (1), pp.10247. ⟨10.1038/s41598-022-13412-w⟩ Journal articles hal-03824009v1
	How tectonic, volcanic and climatic processes in Andean ‘sky islands’ shaped the diversification of endemic ground beetles Jérôme Murienne , Álvaro Barragán , Sophie Manzi , Pablo Samaniego , Pierre Moret Journal of Biogeography, 2022, 49 (11), pp.2077-2090. ⟨10.1111/jbi.14495⟩ Journal articles hal-03861684v1
	Low level of anthropization linked to harsh vertebrate biodiversity declines in Amazonia Isabel Cantera , Opale Coutant , Céline Jézéquel , Jean-Baptiste Decotte , Tony Dejean Nature Communications, 2022, 13 (1), pp.3290. ⟨10.1038/s41467-022-30842-2⟩ Journal articles hal-03868282v1
	Functional and taxonomic responses of tropical moth communities to deforestation Yenny Correa‐carmona , Rodolphe Rougerie , Pierre Arnal , Liliana Ballesteros‐mejia , Jan Beck Insect conservation and diversity, 2022, 15 (2), pp.236-247. ⟨10.1111/icad.12549⟩ Journal articles hal-03419963v1
	On the presence of the giant freshwater prawn, Macrobrachium rosenbergii, in French Guiana confirmed by citizen science and genetic analyses Jérôme Murienne , Johan Chevalier , Simon Clavier Water Biology and Security, 2022, 1 (2), pp.100039. ⟨10.1016/j.watbs.2022.100039⟩ Journal articles hal-03868269v1
	Characterizing the spatial signal of environmental DNA in river systems using a community ecology approach Isabel Cantera , Jean‐baptiste Decotte , Tony Dejean , Jérôme Murienne , Régis Vigouroux Molecular Ecology Resources, 2022, 22 (4), pp.1274-1283. ⟨10.1111/1755-0998.13544⟩ Journal articles hal-04060858v2
	Ecology, evolution, and epidemiology of zoonotic and vector-borne infectious diseases in French Guiana: Transdisciplinarity does matter to tackle new emerging threats Benoît de Thoisy , Olivier Duron , Loïc Epelboin , Lise Musset , Philippe Quénel Infection, Genetics and Evolution, 2021, 93, pp.104916. ⟨10.1016/j.meegid.2021.104916⟩ Journal articles pasteur-03261181v1
	Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments Julian Donald , Jérôme Murienne , Jérôme Chave , Amaia Iribar , Eliane Louisanna Global Ecology and Conservation, 2021, 29, pp.e01724. ⟨10.1016/j.gecco.2021.e01724⟩ Journal articles hal-03282383v1
	At each site its diversity: DNA barcoding reveals remarkable earthworm diversity in neotropical rainforests of French Guiana Marie-Eugénie Maggia , Thibaud Decaëns , Emmanuel Lapied , Lise Dupont , Virginie Roy Applied Soil Ecology, 2021, 164, pp.103932. ⟨10.1016/j.apsoil.2021.103932⟩ Journal articles hal-03648854v1
	Amazonian mammal monitoring using aquatic environmental DNA Opale Coutant , Cécile Richard‐hansen , Benoit de Thoisy , Jean‐baptiste Decotte , Alice Valentini Molecular Ecology Resources, 2021, 21 (6), pp.1875-1888. ⟨10.1111/1755-0998.13393⟩ Journal articles hal-03534348v1
	Unraveling the dietary diversity of Neotropical top predators using scat DNA metabarcoding: A case study on the elusive Giant Otter Erwan Quéméré , Marie Aucourd , Valérie Troispoux , Sébastien Brosse , Jérôme Murienne Environmental DNA, 2021, 3 (5), pp.889-900. ⟨10.1002/edn3.195⟩ Journal articles hal-03217686v1
	Integrative taxonomy of the genus Dyscolus (Coleoptera, Carabidae, Platynini) in Ecuadorian Andes Pierre Moret , Jérôme Murienne European Journal of Taxonomy, 2020, 646, pp.1-55. ⟨10.5852/ejt.2020.646⟩ Journal articles hal-03504601v1
	Detecting fish assemblages with environmental DNA: Does protocol matter? Testing eDNA metabarcoding method robustness Opale Coutant , Isabel Cantera , Kévin Cilleros , Tony Dejean , Alice Valentini Environmental DNA, 2020, ⟨10.1002/edn3.158⟩ Journal articles hal-02995383v1
	Integrative taxonomy of the genus Dyscolus (Coleoptera, Carabidae, Platynini) in Ecuadorian Andes Pierre Moret , Jérôme Murienne European Journal of Taxonomy, 2020, 646, ⟨10.5852/ejt.2020.646⟩ Journal articles hal-02995366v1
	Species better track climate warming in the oceans than on land Jonathan Roger Michel Henri Lenoir , Romain R. Bertrand , Lise Comte , Luana Bourgeaud , Tarek Hattab Nature Ecology & Evolution, 2020, 4 (8), pp.1044-1059. ⟨10.1038/s41559-020-1198-2⟩ Journal articles hal-02995372v1
	First case of parthenogenesis in ladybirds (Coleoptera: Coccinellidae) suggests new mechanisms for the evolution of asexual reproduction Alexandra Magro , Emilie Lecompte , Jean-Louis Hemptinne , António Lucas Soares , Anne‐marie Dutrillaux Journal of Zoological Systematics and Evolutionary Research, 2020, 58 (1), pp.194-208. ⟨10.1111/jzs.12339⟩ Journal articles hal-02404220v1
	Complete mitochondrial genome of the river stingray Potamotrygon orbignyi (Myliobatiformes: Potamotrygonidae) David Ory , Yves Cuenot , Régis Vigouroux , Raphaël Covain , Sebastien Brosse Mitochondrial DNA Part B Resources, 2019, 4 (2), pp.3153-3154. ⟨10.1080/23802359.2019.1666683⟩ Journal articles hal-02404214v1
	Aquatic eDNA for monitoring French Guiana biodiversity Jérôme Murienne , Isabel Cantera , Axel Cerdan , Kévin Cilleros , Jean-Baptiste Decotte Biodiversity Data Journal, 2019, 7, ⟨10.3897/BDJ.7.e37518⟩ Journal articles hal-02404123v1
	High altitude endemic carabid beetles as biogeographic indicators: a case study in equatorial Andes Pierre Moret , Álvaro Barragán , Jérôme Murienne , Arnaud Faille , Mauro Gobbi ARPHA Conference Abstracts, 2019, 2, ⟨10.3897/aca.2.e38693⟩ Journal articles hal-02415812v1
	Descriptcion de una nueva especie del genero Doxocopa Hübner, 1819, del Choco ecuatoriano Mohamed Benmesbah , Mauro Costa , Stephane Attal , Angel L. Viloria , Jérôme Murienne Antenor, 2019 Journal articles hal-02404442v1
	Habitats shape taxonomic and functional composition of Neotropical ant assemblages Mélanie Fichaux , Benoît Béchade , Julian Donald , Arthur Weyna , Jacques Hubert Charles Delabie Oecologia, 2019, 189 (2), pp.501-513. ⟨10.1007/s00442-019-04341-z⟩ Journal articles hal-02322672v1
	Cracking the Code: Examination of Species Delimitations among Hamadryas Butterflies with DNA Barcodes Suggests Caribbean Cracker is Hamadryas februa Hübner (Nymphalidae: Biblidinae) Ivonne Garzón-Orduña , Andrew Brower , Maria Kamilari , Amaia Iribar , Jérôme Murienne Journal of the Lepidopterists' Society, 2018, 72 (1), pp.53-73. ⟨10.18473/lepi.72i1.a6⟩ Journal articles hal-02404097v1
	High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species Arthur Kocher , Sophie Valière , Anne-Laure Bañuls , Jérôme Murienne Parasitology, 2018, 145 (5), pp.585-594. ⟨10.1017/S0031182017002013⟩ Journal articles hal-02404093v1
	Vector soup : high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding Arthur Kocher , Jean-Charles Gantier , Pascal Gaborit , Lucie Zinger , Helene Holota Molecular Ecology Resources, 2017, 17 (2), pp.172-182. ⟨10.1111/1755-0998.12556⟩ Journal articles hal-01603943v1
	DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding Stanislas Talaga , Céline Leroy , Amandine Guidez , Isabelle Dusfour , Romain Girod PLoS ONE, 2017, 12 (12), pp.e0176993. ⟨10.1371/journal.pone.0176993⟩ Journal articles hal-02193342v1
	Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals Arthur Kocher , Benoît de Thoisy , Francois Catzeflis , Maïlis Huguin , Sophie Valière Methods in Ecology and Evolution, 2017, 8 (10), pp.1276 - 1283. ⟨10.1111/2041-210X.12729⟩ Journal articles hal-01836328v1
	iDNA screening: Disease vectors as vertebrate samplers Arthur Kocher , Benoit de Thoisy , François Catzeflis , Sophie Valière , Anne-Laure Bañuls Molecular Ecology, 2017, 26 (22), pp.6478 - 6486. ⟨10.1111/mec.14362⟩ Journal articles hal-01761584v1
	Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes Léa Bardon , Cynthia Sothers , Ghillean Prance , Pierre-Jean Malé , Zhenxiang Xi American Journal of Botany, 2016, 103 (6), pp.1089-1102. ⟨10.3732/ajb.1500463⟩ Journal articles hal-03132947v1
	Complete mitochondrial genome ofLutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis Arthur Kocher , Jean-Charles Gantier , Hélène Holota , Céline Jeziorski , Eric Coissac Mitochondrial DNA Part A, 2016, 27 (6), pp.4219-4221. ⟨10.3109/19401736.2015.1022748⟩ Journal articles hal-01602798v1
	Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico Loubab Zedane , Cynthia Hong-Wa , Jérôme Murienne , Celine Jeziorski , Bruce G. Baldwin Biological Journal of the Linnean Society, 2016, 117 (1), pp.44-57. ⟨10.1111/bij.12509⟩ Journal articles hal-02631026v1
	Shotgun assembly of the complete mitochondrial genome of the neotropical cracker butterfly Hamadryas epinome\ Sebastien Cally , Emeline Lhuillier , Amaia Iribar , Ivonne Garzón-Orduña , Eric Coissac Mitochondrial DNA Part A, 2016, 27 (3), pp.1864-1866. ⟨10.3109/19401736.2014.971262⟩ Journal articles hal-02632787v1
	PCR-free shotgun sequencing of the stone loach mitochondrial genome (Barbatula barbatula) Jérôme Murienne , Céline Jeziorski , Hélène Holota , Eric Coissac , Simon Blanchet Mitochondrial DNA Part A, 2015, 27 (6), pp.4211-4212. ⟨10.3109/19401736.2015.1022744⟩ Journal articles hal-01601477v1
	Sequencing of the mitochondrial genome of the avocado lace bug Pseudacysta perseae (Heteroptera, Tingidae) using a genome skimming approach Arthur Kocher , Eric Guilbert , Emeline Lhuillier , Jérôme Murienne Comptes Rendus Biologies, 2015, 338 (3), pp.149-160. ⟨10.1016/j.crvi.2014.12.004⟩ Journal articles hal-02636710v1
	Complete mitochondrial genome of the gray mouse lemur, Microcebus murinus (Primates, Cheirogaleidae) Emilie Lecompte , Brigitte Crouau-Roy , Fabienne Aujard , Hélène Holota , Jérôme Murienne Mitochondrial DNA Part A, 2015, 27 (5), pp.3514-3516. ⟨10.3109/19401736.2015.1074196⟩ Journal articles mnhn-02291852v1
	Online database for mosquito (Diptera, Culicidae) occurrence records in French Guiana Stanislas Talaga , Jérôme Murienne , Alain Dejean , Céline Leroy Zookeys, 2015, 532, pp.107-115. ⟨10.3897/zookeys.532.6176⟩ Journal articles hal-02095594v1
	Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae) Arthur Kocher , Maria Kamilari , Emeline Lhuillier , Eric Coissac , Julie Péneau Gene, 2014, 552 (1), pp.184-194. ⟨10.1016/j.gene.2014.09.033⟩ Journal articles hal-02638880v1
	Phylogeny of Cidaroida (Echinodermata: Echinoidea) based on mitochondrial and nuclear markers Olivier Brosseau , Jérôme Murienne , Delphine Pichon , Nicolas Vidal , Marc Eléaume Organisms Diversity and Evolution, 2012, 12 (2), pp.155-165. ⟨10.1007/s13127-012-0087-1⟩ Journal articles hal-02923006v1

	The evolutionary history of capital-breeding moths through the lens of wild silkmoths (Saturniidae) phylogenomics Rodolphe Rougerie , Astrid Cruaud , Pierre Arnal , Liliana Ballesteros-Mejia , Fabien L. Condamine 23rd International Conference of the European Society for Lepidopterology & 11th Forum Herbulot, European Society for Lepidopterology (ESL), Sep 2023, Orléans, France Conference papers hal-04236301v1
	From DNA-barcode libraries to global macroecology and macroevolutionary studies in insects Rodolphe Rougerie , Liliana Ballesteros-Mejia , Pierre Arnal , Thibaud Decaens , Jean Yves Rasplus 8th International Barcode of Life Conference, Jun 2019, Trondheim, Norway Conference papers hal-03655937v1
	ACTIAS-WF workflow for a better account of biodiversity Liliana Ballesteros-Mejia , Rodolphe Rougerie , Carlos Lopez-Vaamonde , Thibaud Decaens , J.-Y. Rasplus 8th International Barcode of Life Conference, Jun 2019, Trondheim, Norway Conference papers hal-03655936v1

	Écologie tropicale : de l'ombre à la lumière Swanni Tatiana Alvarado , Christopher Baraloto , Laurent Bremond , François Bretagnolle , Elise Buisson P.-M. Forget, M. Hossaert-McKey & O. Poncy. Le Cherche midi; CNRS, pp.192, 2015, 978-2-7491-4075-9 Books hal-01118878v1

	Advances and prospects of environmental DNA in neotropical rainforests Lucie Zinger , Julian Donald , Sébastien Brosse , Mailyn Adriana Gonzalez , Amaia Iribar Tropical Ecosystems in the 21st Century, 62, Academic Press, pp.331-373, 2020, Advances in Ecological Research, 978-0-12-821134-2. ⟨10.1016/bs.aecr.2020.01.001⟩ Book sections hal-02909735v1

	Phylogenomics Illuminates the Evolutionary History of Wild Silkmoths in Space and Time (Lepidoptera: Saturniidae) Rodolphe Rougerie , Astrid Cruaud , Pierre Arnal , Liliana Ballesteros-Mejia , Fabien Condamine 2022 Preprints, Working Papers, ... hal-03715796v1

Jerome MURIENNE

Presentation

Publications

Bringing traits back into the equation: A roadmap to understand species redistribution

Ants of French Guiana: 16S rRNA sequence dataset

Pangolin genomes offer key insights and resources for the world’s most trafficked wild mammals

Inferring functional diversity from environmental DNA metabarcoding

Environmental DNA reveals a mismatch between diversity facets of Amazonian fishes in response to contrasting geographical, environmental and anthropogenic effects

Biodiversity and vector‐borne diseases: Host dilution and vector amplification occur simultaneously for Amazonian leishmaniases

Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem

How tectonic, volcanic and climatic processes in Andean ‘sky islands’ shaped the diversification of endemic ground beetles

Low level of anthropization linked to harsh vertebrate biodiversity declines in Amazonia

Functional and taxonomic responses of tropical moth communities to deforestation

On the presence of the giant freshwater prawn, Macrobrachium rosenbergii, in French Guiana confirmed by citizen science and genetic analyses

Characterizing the spatial signal of environmental DNA in river systems using a community ecology approach

Ecology, evolution, and epidemiology of zoonotic and vector-borne infectious diseases in French Guiana: Transdisciplinarity does matter to tackle new emerging threats

Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments

At each site its diversity: DNA barcoding reveals remarkable earthworm diversity in neotropical rainforests of French Guiana

Amazonian mammal monitoring using aquatic environmental DNA

Unraveling the dietary diversity of Neotropical top predators using scat DNA metabarcoding: A case study on the elusive Giant Otter

Integrative taxonomy of the genus Dyscolus (Coleoptera, Carabidae, Platynini) in Ecuadorian Andes

Detecting fish assemblages with environmental DNA: Does protocol matter? Testing eDNA metabarcoding method robustness

Integrative taxonomy of the genus Dyscolus (Coleoptera, Carabidae, Platynini) in Ecuadorian Andes

Species better track climate warming in the oceans than on land

First case of parthenogenesis in ladybirds (Coleoptera: Coccinellidae) suggests new mechanisms for the evolution of asexual reproduction

Complete mitochondrial genome of the river stingray Potamotrygon orbignyi (Myliobatiformes: Potamotrygonidae)

Aquatic eDNA for monitoring French Guiana biodiversity

High altitude endemic carabid beetles as biogeographic indicators: a case study in equatorial Andes

Descriptcion de una nueva especie del genero Doxocopa Hübner, 1819, del Choco ecuatoriano

Habitats shape taxonomic and functional composition of Neotropical ant assemblages

Cracking the Code: Examination of Species Delimitations among Hamadryas Butterflies with DNA Barcodes Suggests Caribbean Cracker is Hamadryas februa Hübner (Nymphalidae: Biblidinae)

High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species

Vector soup : high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding

DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding

Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals

iDNA screening: Disease vectors as vertebrate samplers

Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes

Complete mitochondrial genome ofLutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis

Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico

Shotgun assembly of the complete mitochondrial genome of the neotropical cracker butterfly Hamadryas epinome\

PCR-free shotgun sequencing of the stone loach mitochondrial genome (Barbatula barbatula)

Sequencing of the mitochondrial genome of the avocado lace bug Pseudacysta perseae (Heteroptera, Tingidae) using a genome skimming approach

Complete mitochondrial genome of the gray mouse lemur, Microcebus murinus (Primates, Cheirogaleidae)

Online database for mosquito (Diptera, Culicidae) occurrence records in French Guiana

Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)

Phylogeny of Cidaroida (Echinodermata: Echinoidea) based on mitochondrial and nuclear markers

The evolutionary history of capital-breeding moths through the lens of wild silkmoths (Saturniidae) phylogenomics

From DNA-barcode libraries to global macroecology and macroevolutionary studies in insects

ACTIAS-WF workflow for a better account of biodiversity

Écologie tropicale : de l'ombre à la lumière

Advances and prospects of environmental DNA in neotropical rainforests

Phylogenomics Illuminates the Evolutionary History of Wild Silkmoths in Space and Time (Lepidoptera: Saturniidae)