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Johan Montagnat

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Computer scientist

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Identification of Spatiotemporal Dispersion Electrograms in Atrial Fibrillation Ablation Using Machine Learning: A Comparative Study

Amina Ghrissi , Douglas Almonfrey , Fabien Squara , Johan Montagnat , Vicente Zarzoso
Biomedical Signal Processing and Control, inPress, ⟨10.1016/j.bspc.2021.103269⟩
Journal articles hal-03373043v1
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Bridging the Semantic Web and NoSQL Worlds: Generic SPARQL Query Translation and Application to MongoDB

Franck Michel , Catherine Faron Zucker , Johan Montagnat
Lecture Notes in Computer Science, 2019, LNCS, 11360, pp.125-165
Journal articles hal-01926379v1
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Scientific workflows: Past, present and future

Malcolm Atkinson , Sandra Gesing , Johan Montagnat , Ian Taylor
Future Generation Computer Systems, 2017, 75, pp.216 - 227. ⟨10.1016/j.future.2017.05.041⟩
Journal articles hal-01544818v1
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Domain-specific summarisation of Life-Science e-experiments from provenance traces

Alban Gaignard , Johan Montagnat , Bernard Gibaud , Germain Forestier , Tristan Glatard
Journal of Web Semantics, 2014, 29, pp.19-30. ⟨10.1016/j.websem.2014.07.001⟩
Journal articles hal-01027596v1
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OntoVIP: An ontology for the annotation of object models used for medical image simulation.

Bernard Gibaud , Germain Forestier , Hugues Benoit-Cattin , Frédéric Cervenansky , Patrick Clarysse
Journal of Biomedical Informatics, 2014, 52, pp.279-92. ⟨10.1016/j.jbi.2014.07.008⟩
Journal articles inserm-01062371v1
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Fine-Grain Interoperability of Scientific Workflows in Distributed Computing Infrastructures

Kassian Plankensteiner , Radu Prodan , Matthias Janetschek , Thomas Fahringer , Johan Montagnat
Journal of Grid Computing, 2013, 11 (3), pp.429-456. ⟨10.1007/s10723-013-9261-8⟩
Journal articles hal-00832214v1
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Ingénierie dirigée par les modèles : quels supports à l'interopérabilité des systèmes d'information ?

Annie Authosserre-Cavarero , Frédéric Bertrand , Mireille Fornarino , Philippe Collet , Hubert Dubois
Revue des Sciences et Technologies de l'Information - Série ISI : Ingénierie des Systèmes d'Information, 2013
Journal articles hal-00813675v2
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Computer-Assisted Scientific Workflow Design

Nadia Cerezo , Johan Montagnat , Mireille Blay-Fornarino
Journal of Grid Computing, 2013, 11 (3), pp.585-610. ⟨10.1007/s10723-013-9264-5⟩
Journal articles hal-00833692v1
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Bundle and Pool Architecture for Multi-Language, Robust, Scalable Workflow Executions

David Rogers , Ian Harvey , Tram Truong Huu , Kieran Evans , Tristan Glatard
Journal of Grid Computing, 2013, 11 (3), pp.457-480. ⟨10.1007/s10723-013-9267-2⟩
Journal articles hal-00832221v1
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A virtual imaging platform for multi-modality medical image simulation.

Tristan Glatard , Carole Lartizien , Bernard Gibaud , Rafael Ferreira da Silva , Germain Forestier
IEEE Transactions on Medical Imaging, 2013, 32 (1), pp.110-8. ⟨10.1109/TMI.2012.2220154⟩
Journal articles inserm-00762497v1
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Composing Multiple Variability Artifacts to Assemble Coherent Workflows

Mathieu Acher , Philippe Collet , Alban Gaignard , Philippe Lahire , Johan Montagnat
Software Quality Journal, 2012, 20 (3-4), pp.689-734. ⟨10.1007/s11219-011-9170-7⟩
Journal articles hal-00733556v1
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Joint Elastic Cloud and Virtual Network Framework for Application Performance-cost Optimization

Tram Truong Huu , Guilherme Koslovski , Fabienne Anhalt , Johan Montagnat , Pascale Vicat-Blanc Primet
Journal of Grid Computing, 2011, 9 (1), pp.27-47. ⟨10.1007/s10723-010-9168-6⟩
Journal articles hal-00677784v1
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Réparation de modèles par transformations indempotentes

Clémentine Nemo , Mireille Blay-Fornarino , Johan Montagnat , Michel Riveill
Revues des Sciences et Technologies de l'Information, 2011, 16 (5), pp.73-108
Journal articles hal-00683448v1
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Optimization of jobs submission on the EGEE production grid: modeling faults using workload

Diane Lingrand , Johan Montagnat , Janusz Martyniak , David Colling
Journal of Grid Computing, 2010, 8 (2), pp.305-321. ⟨10.1007/s10723-010-9151-2⟩
Journal articles hal-00677775v1
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Modeling the latency on production grids with respect to the execution context

Diane Lingrand , Tristan Glatard , Johan Montagnat
Parallel Computing, 2009, 35 (10-11), pp.493--511. ⟨10.1016/j.parco.2009.07.003⟩
Journal articles hal-00459261v1
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A Service-Oriented Architecture enabling dynamic services grouping for optimizing distributed workflows execution

Tristan Glatard , Johan Montagnat , David Emsellem , Diane Lingrand
Future Generation Computer Systems, 2008, 24 (7), pp.720--730. ⟨10.1016/j.future.2008.02.011⟩
Journal articles hal-00459808v1
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Workflow-based data parallel applications on the EGEE production grid infrastructure

Johan Montagnat , Tristan Glatard , Isabel Campos Plasencia , Francisco Castejon , Xavier Pennec
Journal of Grid Computing, 2008, 6 (8), pp.369-383. ⟨10.1007/s10723-008-9108-x⟩
Journal articles hal-00683983v1
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Grid enabled virtual screening against malaria

N. Jacq , J. Salzemann , F. Jacq , Yannick Legre , E. Medernach
Journal of Grid Computing, 2008, 6, pp.29-43
Journal articles in2p3-00114120v1
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A Secure Grid Medical Data Manager Interfaced to the gLite Middleware

Johan Montagnat , Akos Frohner , Daniel Jouvenot , Christophe Pera , Peter Kunszt
Journal of Grid Computing, 2008, 6 (1), pp.45-59. ⟨10.1007/s10723-007-9088-2⟩
Journal articles hal-00683989v1
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Flexible and efficient workflow deployement of data-intensive applications on grids with MOTEUR

Tristan Glatard , Johan Montagnat , Diane Lingrand , Xavier Pennec
International Journal of High Performance Computing Applications, 2008, 22 (3), pp.347-360. ⟨10.1177/1094342008096067⟩
Journal articles hal-00459130v1
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3D models for vascular lumen segmentation in MRA images and for artery-stenting simulation

Leonardo Flórez-Valencia , Johan Montagnat , Maciej Orkisz
Ingénierie et Recherche Biomédicale (ITBM-RBM), 2007, 28 (2), pp.65-71. ⟨10.1016/j.rbmret.2007.04.001⟩
Journal articles hal-00683451v1
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Partitionning medical image databases for content-based queries on a grid

Johan Montagnat , Vincent Breton , Isabelle Magnin
Methods of Information in Medicine, 2005, 44 (2), pp.154-160
Journal articles hal-00683642v1
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Grid-enabling medical image analysis

Cécile Germain-Renaud , Vincent Breton , Patrick Clarysse , Yann Gaudeau , Tristan Glatard
International Journal of Clinical Monitoring and Computing, 2005, 19 (4-5), pp.339-349. ⟨10.1007/s10877-005-0679-9⟩
Journal articles inria-00174284v1

The Healthgrid White Paper.

Vincent Breton , Kevin Dean , Tony Solomonides , Ignacio Blanquer , V. Hernandez
Studies in Health Technology and Informatics, 2005, 112, pp.249-321
Journal articles hal-03010736v1
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4D deformable models with temporal constraints: application to 4D cardiac image segmentation

Johan Montagnat , Hervé Delingette
Medical Image Analysis, 2005, 9 (1), pp.87-100. ⟨10.1016/j.media.2004.06.025⟩
Journal articles hal-00682924v1
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3D graphical models for vascular-stent pose simulation

Leonardo Flórez-Valencia , Maciej Orkisz , Johan Montagnat
Machine Graphics & Vision, 2004, 13 (3), pp.235-248
Journal articles hal-00682926v1
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Medical images simulation storage and processing on the European DataGrid testbed

Johan Montagnat , F. Bellet , Hugues Benoit-Cattin , Vincent Breton , Lionel Brunie
Journal of Grid Computing, 2004, 2, pp.387-400. ⟨10.1007/s10723-004-5744-y⟩
Journal articles in2p3-00023294v1

DataGrid prototype of a biomedical grid

Vincent Breton , R. Medina , Johan Montagnat
Methods MIMST, 2003, 42, pp.1-5
Journal articles in2p3-00013832v1
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Anisotropic Filtering for Model Based Segmentation of 4D Cylindrical Echocardiographic Images

Johan Montagnat , Maxime Sermesant , Hervé Delingette , Grégoire Malandain , Nicholas Ayache
Pattern Recognition Letters, 2003, 24 (4-5), pp.815-828. ⟨10.1016/S0167-8655(02)00184-8⟩
Journal articles inria-00615640v2
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A review of deformable surfaces: topology, geometry and deformation

Johan Montagnat , Hervé Delingette , Nicholas Ayache
Image and Vision Computing, 2001, 9 (14), pp.1023-1040. ⟨10.1016/S0262-8856(01)00064-6⟩
Journal articles inria-00615110v2
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Shape and Topology Constraints on Parametric Active Contours

Hervé Delingette , Johan Montagnat
Computer Vision and Image Understanding, 2001, 83 (2), pp.140--171. ⟨10.1006/cviu.2001.0920⟩
Journal articles inria-00615109v1
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Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery

Luc Soler , Hervé Delingette , Grégoire Malandain , Johan Montagnat , Nicholas Ayache
Computer Aided Surgery, 2001, 6 (3), pp.131-42
Journal articles inria-00615108v1
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Globally constrained deformable models for 3D object reconstruction

Johan Montagnat , Hervé Delingette
Signal Processing, 1998, 71 (2), pp.173--186
Journal articles inria-00615089v1
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Identification of Spatiotemporal Dispersion Electrograms in Persistent Atrial Fibrillation Ablation Using Maximal Voltage Absolute Values

Amina Ghrissi , Fabien Squara , Johan Montagnat , Vicente Zarzoso
EUSIPCO-2020, 28th European Signal Processing Conference, Jan 2021, Amsterdam, Netherlands. ⟨10.23919/Eusipco47968.2020.9287681⟩
Conference papers hal-02756806v2
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Data Augmentation for Automatic Identification of Spatiotemporal Dispersion Electrograms in Persistent Atrial Fibrillation Ablation Using Machine Learning

Amina Ghrissi , Douglas Almonfrey , Rafael Costa de Almeida , Fabien Squara , Johan Montagnat
42nd Annual International Conferences of the IEEE Engineering in Medicine and Biology Society, IEEE, Jul 2020, Montreal, Canada
Conference papers hal-02871770v1
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Identification of Ablation Sites in Persistent Atrial Fibrillation Based on Spatiotemporal Dispersion of Electrograms Using Machine Learning

Amina Ghrissi , Fabien Squara , Johan Montagnat , Vicente Zarzoso
Computing in Cardiology, Sep 2020, Rimini, Italy
Conference papers hal-03105200v1

Construction d’un référentiel taxonomique commun pour des études sur l’histoire de la zoologie, l’archéozoologie et la biologie

Franck Michel , Cécile Callou , Catherine Faron Zucker , Olivier Gargominy , Chloé Martin
SemWeb.Pro 2016, Nov 2016, Paris, France
Conference papers hal-01401357v1
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A SPARQL distributed query processing engine addressing both vertical and horizontal data partitions

Abdoul Macina , Johan Montagnat , Olivier Corby
BDA 2016 - 32ème Conférence sur la Gestion de Données - Principes, Technologies et Applications, Nov 2016, Poitiers, France
Conference papers hal-01404165v1
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A Mapping-based Method to Query MongoDB Documents with SPARQL

Franck Michel , Catherine Faron Zucker , Johan Montagnat
27th International Conference on Database and Expert Systems Applications (DEXA 2016), Sep 2016, Porto, Portugal
Conference papers hal-01330146v1
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A Generic Mapping-Based Query Translation from SPARQL to Various Target Database Query Languages

Franck Michel , Catherine Faron Zucker , Johan Montagnat
12th International Conference on Web Information Systems and Technologies (WEBIST'16), Apr 2016, Roma, Italy
Conference papers hal-01280951v1
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Towards a Shared Reference Thesaurus for Studies on History of Zoology, Archaeozoology and Conservation Biology

Cécile Callou , Franck Michel , Catherine Faron Zucker , Chloé Martin , Johan Montagnat
Extended Semantic Web Confenrece 2015, workshop Semantic Web For Scientific Heritage (SW4SH), May 2015, Portoroz, Slovenia
Conference papers hal-01146638v1
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Translation of Relational and Non-Relational Databases into RDF with xR2RML

Franck Michel , Loïc Djimenou , Catherine Faron Zucker , Johan Montagnat
11th International Confenrence on Web Information Systems and Technologies (WEBIST'15), Oct 2015, Lisbon, Portugal. pp.443-454, ⟨10.5220/0005448304430454⟩
Conference papers hal-01207828v1
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Global Initiative for Sentinel e-Health Network on Grid (GINSENG): Medical Data Integration and Semantic Developments for Epidemiology

S. Cipiere , G. Ereteo , A. Gaignard , N. Boujelben , S. Gaspard
Workshop on Clusters, Clouds and Grids for Health 2014, May 2014, Chicago, United States. pp.755-763, ⟨10.1109/CCGrid.2014.45⟩
Conference papers hal-01048737v1
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Semantic Federation of Distributed Neurodata

Alban Gaignard , Johan Montagnat , Catherine Faron Zucker , Olivier Corby
MICCAI Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications, Oct 2012, Nice, France. pp.41-50
Conference papers hal-00746765v1
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Fédération multi-sources en neurosciences : intégration de données relationnelles et sémantiques

Alban Gaignard , Johan Montagnat , Catherine Faron Zucker , Olivier Corby
IC pour l'Interopérabilité Sémantique dans les applications en e-Santé, Jun 2012, France. 6 p
Conference papers hal-01018722v1
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Achievements and perspectives of the biomed technical team

Franck Michel , Tristan Glatard , Johan Montagnat
EGI Community Forum, Mar 2012, Munich, Germany. pp.PoS(EGICF12-EMITC2)015
Conference papers hal-00760715v1

OntoVIP: an ontology for the annotation of object models used for medical image simulation

B. Gibaud , G. Forestier , H. Benoit-Cattin , F. Cervenansky , P. Clarysse
IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB), Sep 2012, La Jolla, United States. pp.110, ⟨10.1109/HISB.2012.35⟩
Conference papers hal-00830912v1

Design of an ontology for the annotation of object models used for medical image simulation

B. Gibaud , G. Forestier , B. Benoit-Cattin , F. Cervenansky , P. Clarysse
Nouvelles méthodologies en imagerie du vivant, Dec 2012, Lyon, France
Conference papers hal-00829556v1
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KGRAM Versatile Inference and Query Engine for the Web of Linked Data

Olivier Corby , Alban Gaignard , Catherine Faron Zucker , Johan Montagnat
IEEE/WIC/ACM International Conference on Web Intelligence, Dec 2012, Macao, China. pp.1-8
Conference papers hal-00746772v1
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Technical support for Life Sciences communities on a production grid infrastructure

Franck Michel , Johan Montagnat , Tristan Glatard
HealthGrid'12, May 2012, Amsterdam, Netherlands. pp.1-10
Conference papers hal-00677839v1
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Scalable and Resilient Workflow Executions on Production Distributed Computing Infrastructures

Javier Rojas Balderrama , Tram Truong Huu , Johan Montagnat
International Symposium on Parallel and Distributed Computing (ISPDC 2012), Jun 2012, Münich, Germany. pp.1-8
Conference papers hal-00691579v1
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Interopérabilité des systèmes d'information : approches dirigées par les modèles

Annie Authosserre-Cavarero , Frederic Bertrand , Mireille Blay- Fornarino , Philippe Collet , Hubert Dubois
Inforsid 2012, May 2012, Montpellier, France. pp.11-30
Conference papers hal-00707536v1
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A Comprehensive Framework for Scientific Applications Execution on Distributed Computing Infrastructures

Javier Rojas Balderrama , Tram Truong Huu , Johan Montagnat
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Conference papers hal-00653021v1
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NeuroLOG: sharing neuroimaging data using an ontology-based federated approach.

Bernard Gibaud , Gilles Kassel , Michel Dojat , Bénédicte Batrancourt , Franck Michel
American Medical Informatics Association, Oct 2011, Washington DC, United States. pp.472-80
Conference papers hal-00683087v1
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Characterizing semantic service parameters with Role concepts to infer domain-specific knowledge at runtime

Alban Gaignard , Johan Montagnat , Bacem Wali , Bernard Gibaud
International Conference on Knowledge Engineering and Ontology Development (KEOD'11), Oct 2011, Paris, France. pp.12
Conference papers hal-00677829v1
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Scientific Workflow Reuse through Conceptual Workflows

Nadia Cerezo , Johan Montagnat
Workshop on Workflows in Support of Large-Scale Science (WORKS'11), Nov 2011, Seattle, United States. pp.1-10
Conference papers hal-00677831v1

A federated system for sharing and reuse of images and image processing tools in neuroimaging

Bernard Gibaud , Farooq Ahmad , Christian Barillot , Franck Michel , Bacem Wali
Computer Assisted Radiology and Surgery (CARS'11), Jun 2011, Berlin, Germany
Conference papers hal-00690921v1
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g-INFO portal: a solution to monitor Influenza A on the Grid for non-grid users

Trung-Tung Doan , Quang-Minh Dao , Trong-Hieu Vu , Hong-Phong Pham , Vincent Breton
HealthGrid, Jun 2011, Bristol, United Kingdom. pp.1-10
Conference papers hal-00683104v1
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IWIR: A Language Enabling Portability Across Grid Workflow Systems

Kassian Plankensteiner , Johan Montagnat , Radu Prodan
Workshop on Workflows in Support of Large-Scale Science (WORKS'11), Nov 2011, Seattle, United States. pp.97-106, ⟨10.1145/2110497.2110509⟩
Conference papers hal-00677832v1

NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging

Michel Dojat , Mélanie Pélégrini-Issac , Farooq Ahmad , Christian Barillot , Bénédicte Batrancourt
Organization for Human Brain Mapping (HBM'11), Jun 2011, Quebec, Canada
Conference papers hal-00813796v1
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Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform

Rafael Ferreira da Silva , Sorina Camarasu-Pop , Baptiste Grenier , Vanessa Hamar , David Manset
HealthGrid 2011, Jun 2011, Bristol, United Kingdom. pp.1-10
Conference papers hal-00677827v1
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jGASW: A Service-Oriented Framework Supporting High Throughput Computing and Non-functional Concerns

Javier Rojas Balderrama , Johan Montagnat , Diane Lingrand
IEEE International Conference on Web Services (ICWS'10), Jul 2010, Miami, United States. pp.691-694, ⟨10.1109/ICWS.2010.59⟩
Conference papers hal-00677819v1
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Issues and Scenarios for Self-Managing Grid Middleware

Philippe Collet , Filip Krikava , Johan Montagnat , Mireille Blay-Fornarino , David Manset
Workshop on Grids Meet Autonomic Computing, Jun 2010, Washington, DC, United States. pp.1-10
Conference papers hal-00683109v1
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Virtual resources allocation for workflow-based applications distribution on a cloud infrastructure

Tram Truong Huu , Johan Montagnat
International Conference on Cluster, Cloud and Grid Computing (CCGrid 2010), May 2010, Melbourne, Australia. pp.1-6, ⟨10.1109/CCGRID.2010.23⟩
Conference papers hal-00677810v1
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Grid-wide neuroimaging data federation in the context of the NeuroLOG project.

Franck Michel , Alban Gaignard , Farooq Ahmad , Christian Barillot , Bénédicte Batrancourt
HealthGrid'10, Jun 2010, Paris, France. pp.112-123, ⟨10.3233/978-1-60750-583-9-112⟩
Conference papers inserm-00512799v1
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Efficient resubmission strategies to design robust grid production environments

Diane Lingrand , Johan Montagnat
IEEE e-Science (e-Science), Dec 2010, Brisbane, Australia. pp.198-205, ⟨10.1109/eScience.2010.11⟩
Conference papers hal-00677824v1
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Intégration des connaissances en neurosciences dans un environnement multi-centrique

Alban Gaignard , Johan Montagnat
Journées francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nîmes, France. pp.21-30
Conference papers hal-00691827v1
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Reliablility Support in Virtual Infrastructures

Guilherme Koslovski , Wai-Leong Yeow , Cedric Westphal , Tram Truong Huu , Johan Montagnat
IEEE International Conference on Cloud Computing Technology and Science (CloudCom'10), Nov 2010, Indianapolis, United States. pp.49-58, ⟨10.1109/CloudCom.2010.23⟩
Conference papers hal-00677823v1
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Scientific workflows development using both visual-programming and scripted representations

Ketan Maheshwari , Johan Montagnat
International Workshop on Scientific Workflows (SWF'10), Jul 2010, Miami, United States. pp.1-8
Conference papers hal-00677817v1
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Workflow-based comparison of two Distributed Computing Infrastructures

Johan Montagnat , Tristan Glatard , Damien Reimert , Ketan Maheshwari , Eddy Caron
Workshop on Workflows in Support of Large-Scale Science (WORKS 2010), Nov 2010, New Orleans, United States. pp.1-10, ⟨10.1109/WORKS.2010.5671856⟩
Conference papers hal-00677820v1
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Issues and scenarios for self-managing grid middleware

Philippe Collet , Filip Křikava , Johan Montagnat , Mireille Blay-Fornarino , David Manset
Proceeding of the 2nd Workshop on Grids Meets Autonomic Computing, 2010, Washington D.C., United States. ⟨10.1145/1809029.1809033⟩
Conference papers hal-01117780v1
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Medical Image Processing Workflow Support on the EGEE Grid with Taverna

Ketan Maheshwari , Carole Goble , Paolo Missier , Johan Montagnat
22nd IEEE International Symposium on Computer Based Medical Systems (CBMS'09), Aug 2009, New Mexico, United States. pp.1-7, ⟨10.1109/CBMS.2009.5255332⟩
Conference papers hal-00677802v1
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Orchestration Evolution Following Dataflow Concepts: Introducing Unanticipated Loops Inside a Legacy Workflow

Sébastien Mosser , Mireille Blay-Fornarino , Johan Montagnat
International Conference on Internet and Web Applications and Services (ICIW), May 2009, Venice, Italy. pp.1-6
Conference papers hal-00531036v1
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Towards Production-level Cardiac Image Analysis with Grids

Ketan Maheshwari , Tristan Glatard , Joel Schaerer , Bertrand Delhay , Sorina Camarasu-Pop
HealthGrid 2009, Jun 2009, Berlin, Germany. pp.31-40, ⟨10.3233/978-1-60750-027-8-31⟩
Conference papers hal-00677800v1
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A Scalable Security Model for Enabling Dynamic Virtual Private Execution Infrastructures on the Internet

Pascale Vicat-Blanc Primet , Jean-Patrick Gelas , Olivier Mornard , Guilherme Koslovski , Vincent Roca
Proceedings of the 2009 9th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGRID '09), May 2009, Shanghai, China. pp.348-355, ⟨10.1109/CCGRID.2009.76⟩
Conference papers hal-00677790v1
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A distributed security policy for neuroradiological data sharing

Alban Gaignard , Johan Montagnat
HealthGrid 2009, Jun 2009, Berlin, Germany. pp.257-262, ⟨10.3233/978-1-60750-027-8-257⟩
Conference papers hal-00677795v1
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Modeling user submission strategies on production grids

Diane Lingrand , Johan Montagnat , Tristan Glatard
International Symposium on High Performance Distributed Computing, Jun 2009, Munchen, Germany. pp.121-130, ⟨10.1145/1551609.1551633⟩
Conference papers hal-00459073v1
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Analyzing the EGEE production grid workload: application to jobs submission optimization

Diane Lingrand , Johan Montagnat , Janusz Martyniak , David Colling
14th Workshop on Job Scheduling Strategies for Parallel Processing, May 2009, Roma, Italy. pp.37--58, ⟨10.1007/978-3-642-04633-9⟩
Conference papers hal-00459077v1
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A data-driven workflow language for grids based on array programming principles

Johan Montagnat , Benjamin Isnard , Tristan Glatard , Ketan Maheshwari , Mireille Blay-Fornarino
International conference on High Performance Computing, networking, storage and analysis (SC09), Nov 2009, Portland, United States. pp.1-10, ⟨10.1145/1645164.1645171⟩
Conference papers hal-00677806v1
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Executing distributed applications on virtualized infrastructures specified with the VXDL language and managed by the HIPerNET framework

Guilherme Koslovski , Tram Truong Huu , Johan Montagnat , Pascale Vicat-Blanc Primet
First International Conference, CloudComp 2009, Oct 2009, Munich, Germany. pp.3-19, ⟨10.1007/978-3-642-12636-9_1⟩
Conference papers hal-00677804v1
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Estimating the execution context for refining submission strategies on production grids

Diane Lingrand , Johan Montagnat , Tristan Glatard
CCGrid, May 2008, Lyon, France. pp.753 -- 758
Conference papers hal-00461155v1
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Estimation of latency on production grid over several weeks

Diane Lingrand , Johan Montagnat , Tristan Glatard
ICT4Health, Feb 2008, Manila, Philippines. pp.4
Conference papers hal-00461615v1
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NeuroLOG: Neuroscience Application Workflows Execution on the EGEE Grid

Javier Rojas Balderrama , Diane Lingrand , Erik Pernod , Jean-Christophe Souplet , Xavier Pennec
EGEE conference, Sep 2008, Istanbul, Turkey
Conference papers hal-00461625v1
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A framework for evaluating the impact of compression on registration algorithms without gold standard

Tristan Glatard , Johan Montagnat , Xavier Pennec
International Conference on Image Processing, Oct 2008, San Diego, California, United States. pp.2912-2915, ⟨10.1109/ICIP.2008.4712404⟩
Conference papers hal-00683112v1
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Imaging Services on the Grid as a Product Line: Requirements and Architecture

Mathieu Acher , Ph. Collet , Philippe Lahire , Johan Montagnat
Workshop Service-Oriented Architectures and Software Product Lines - Putting Both Together (SOAPL'08), at SPLC 2008, Sep 2008, Limerick, Ireland. pp.6
Conference papers hal-00419992v1
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Implementation of Turing machines with the Scufl data-flow language

Tristan Glatard , Johan Montagnat
Workshop on Workflow Systems in e-Science, May 2008, Lyon, France. pp.1-10
Conference papers hal-00683113v1

MICCAI-Grid Workshop

Silvia D. Olabarriaga , Diane Lingrand , Johan Montagnat
MICCAI 2008, Sep 2008, New-York, United States
Conference papers hal-00694970v1
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A probabilistic model to analyse workflow performance on production grids

Tristan Glatard , Johan Montagnat , Xavier Pennec
8th IEEE International Symposium on Cluster Computing and the Grid (CCGRID'08), May 2008, Lyon, France. pp.510-517, ⟨10.1109/CCGRID.2008.123⟩
Conference papers hal-00481713v1
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NeuroLOG: a community-driven middleware design

Johan Montagnat , Alban Gaignard , Diane Lingrand , Javier Rojas Balderrama , Philippe Collet
HealthGrid, Jun 2008, Chicago, United States. pp.49--58
Conference papers hal-00461611v1
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Taking into account the execution context to optimize medical image databases indexation

Diane Lingrand , Tristan Glatard , Johan Montagnat
Second Singaporean-French Biomedical Imaging Workshop, Aug 2007, Lyon, France
Conference papers hal-00461626v1
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Impact of the execution context on Grid job performances

Tristan Glatard , Diane Lingrand , Johan Montagnat , Michel Riveill
International Workshop on Context-Awareness and Mobility in Grid Computing (WCAMG'07), May 2007, Rio de Janeiro, Brazil. pp.713--718, ⟨10.1109/CCGRID.2007.62⟩
Conference papers hal-00459267v1
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Optimizing jobs timeouts on clusters and production grids

Tristan Glatard , Johan Montagnat , Xavier Pennec
Cluster Computing and the Grid, May 2007, Rio de Janeiro, Brazil. pp.100-107, ⟨10.1109/CCGRID.2007.78⟩
Conference papers hal-00683172v1
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Merging overlapping orchestrations: an application to the Bronze Standard medical application

Clémentine Nemo , Tristan Glatard , Mireille Blay-Fornarino , Johan Montagnat
International Conference on Services Computing (SCC 2007), IEEE Computer Engineering, Jul 2007, Salt Lake City, Utah, United States. pp.364-371, ⟨10.1109/SCC.2007.79⟩
Conference papers hal-00683168v1
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Medical image registration algorithms assessment: Bronze Standard application enactment on grids using the MOTEUR workflow engine

Tristan Glatard , Johan Montagnat , Xavier Pennec
HealthGrid conference (HealthGrid'06), Valencia, Spain, June 7-9, Jun 2006, Valencia, Spain. pp.93-103
Conference papers hal-00683188v1
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Probabilistic and dynamic optimization of job partitioning on a grid infrastructure

Tristan Glatard , Johan Montagnat , Xavier Pennec
Parallel, Distributed and network-based Processing, Feb 2006, Montbéliard-Sochaux, France. pp.231-238, ⟨10.1109/PDP.2006.61⟩
Conference papers hal-00683203v1
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Data composition patterns in service-based workflows

Johan Montagnat , Tristan Glatard , Diane Lingrand
Workshop on Workflows in Support of Large-Scale Science (WORKS'06), Jun 2006, Paris, France. pp.1-10
Conference papers hal-00683193v1
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Safe Distributed Architecture for Image-based Computer Assisted Diagnosis

Sébastien Varette , Jean-Louis Roch , Johan Montagnat , Ludwig Seitz , Jean-Marc Pierson
1st IEEE International Workshop on Health Pervasive Systems (HPS 2006) in conjunction with ICPS 06, IEEE, Jun 2006, Lyon, France. pp.1-10
Conference papers hal-00683206v1
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Bridging clinical information systems and grid middleware: a Medical Data Manager

Johan Montagnat , Daniel Jouvenot , Christophe Pera , Akos Frohner , Peter Kunszt
HealthGrid, Jun 2006, Valencia, Spain. pp.14-24
Conference papers hal-00683184v1
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Performance evaluation of grid-enabled registration algorithms using bronze-standards

Tristan Glatard , Xavier Pennec , Johan Montagnat
Medical Image Computing and Computer-Assisted Intervention (MICCAI 2006), Oct 2006, Copenhagen, Denmark. pp.152-160, ⟨10.1007/11866763_19⟩
Conference papers hal-00683176v1
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Generic web service wrapper for efficient embedding of legacy codes in service-based workflows

Tristan Glatard , David Emsellem , Johan Montagnat
Grid-Enabling Legacy Applications and Supporting End Users Workshop, Jun 2006, Paris, France. pp.1-10
Conference papers hal-00683196v1
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Efficient services composition for grid-enabled data-intensive applications

Tristan Glatard , Johan Montagnat , Xavier Pennec
High Performance and Distributed Computing, Jun 2006, Paris, France. pp.333-334, ⟨10.1109/HPDC.2006.1652170⟩
Conference papers hal-00683201v1
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An experimental comparison of Grid5000 clusters and the EGEE grid

Tristan Glatard , Johan Montagnat , Xavier Pennec
Experimental Grid testbeds for the assessment of large-scale distributed applications and tools, Jun 2006, Paris, France. pp.1-10
Conference papers hal-00683199v1
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Authentication and autorisation prototype on the microgrid for medical data management

Ludwig Seitz , Johan Montagnat , Jean-Marc Pierson , Didier Oriol , Diane Lingrand
HealthGrid (HG), Apr 2005, Oxford, United Kingdom. pp.222-233
Conference papers hal-00691618v1
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Grid-enabling medical image analysis

Cécile Germain , Vincent Breton , Patrick Clarysse , Yann Gaudeau , Tristan Glatard
Cluster Computing and Grid 2005 (CCGrid05) Bio-Medical Computations on the Grid (Bio-Grid), May 2005, Cardiff, United Kingdom. pp.339-349, ⟨10.1007/s10877-005-0679-9⟩
Conference papers hal-00166971v1
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Levelset and B-spline deformable model techniques for image segmentation: a pragmatic comparative study

Diane Lingrand , Johan Montagnat
14th Scandinavian Conference on Image Analysis, Jun 2005, Joennsu, Finland. pp.25--34, ⟨10.1007/11499145_4⟩
Conference papers hal-00460711v1
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Grid-enabled workflows for data intensive medical applications

Tristan Glatard , Johan Montagnat , Xavier Pennec
International Symposium on Computer-Based Medical Systems (CBMS), Jun 2005, Dublin, Ireland. pp.537-542, ⟨10.1109/CBMS.2005.61⟩
Conference papers hal-00691613v1
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Distributed Authentication in GRID5000

Sébastien Varette , Sébastien Georget , Johan Montagnat , Jean-Louis Roch , Franck Leprévost
Grid Computing and its Application to Data Analysis (GADA'05), Nov 2005, Agia Napa, Cyprus. pp.314-326, ⟨10.1007/11575863_51⟩
Conference papers hal-00691609v1
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MetaData for Efficient, Secure and Extensible Access to Data in a Medical Grid

Jean-Marc Pierson , Ludwig Seitz , Hector Duque , Johan Montagnat
Database and Expert System Applications (DEXA'04), Sep 2004, Zaragoza, Spain. pp.562-566
Conference papers hal-00691642v1
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Grid technology for biomedical applications

Vincent Breton , Christophe Blanchet , L. Maigne , Johan Montagnat
VECPAR 2004 Conference, Jun 2004, Valencia, Spain. pp.204-218, ⟨10.1007/b106965⟩
Conference papers in2p3-00171787v1
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Toward accurate segmentation of the LV myocardium and chamber for volumes estimation in gated SPECT sequences

Diane Lingrand , Arnaud Charnoz , Malik Koulibaly , Jacques Darcourt , Johan Montagnat
European Conference on Computer Vision (ECCV'04), May 2004, Prague, Czech Republic. pp.1-10
Conference papers hal-00691648v1
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Comparison of 3D Deformable Models For in vivo Measurements of Mouse Embryo from 3D Ultrasound Images

Bo Qiu , Patrick Clarysse , Johan Montagnat , Marc Janier , Didier Vray
International Ultrasonics, Ferroelectrics, and Frequency Control (UFFC'04), Aug 2004, Montreal, Canada. pp.1-10
Conference papers hal-00691644v1
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Flexible and Dynamic Control of Network QoS in Grid environments: the QoSINUS approach

Pascale Vicat-Blanc Primet , Johan Montagnat , Fabien Chanussot
Cluster 2004, Sep 2004, San Diego, United States. pp.1-10
Conference papers hal-00691636v1

Intraoperable Medical Image Registration Grid Service

Derek Hill , Xavier Pennec , Michael Burns , Michael Parkin , Jo Hajnal
Proc. of HealthGrid 2004, 2004, Clermont-Ferrand, France
Conference papers inria-00615977v1
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Medical image databases content-based queries partitioning on a grid

Johan Montagnat , Vincent Breton , I.E. Magnin
HealthGRID 2004, Jan 2004, Clermont-Ferrand, France. pp.154-160
Conference papers in2p3-00024242v1
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Texture based medical image indexing and retrieval: application to cardiac imaging

Tristan Glatard , Johan Montagnat , Isabelle Magnin
workshop on Multimedia Information Retrieval (MIR), Oct 2004, New York, United States. pp.135-142
Conference papers hal-00691625v1
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Efficient visualization of 3D medical scenes for remote interactive applications

Johan Montagnat , Eduardo Davila , Isabelle Magnin
Image and Signal Processing and Analysis (ISPA), Sep 2003, Roma, Italy. pp.1-10
Conference papers hal-00691652v1
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DM2: A Distributed Medical Data Manager for Grids

Hector Duque , Johan Montagnat , Jean-Marc Pierson , Lionel Brunie , Isabelle Magnin
3rd IEEE/ACM International Symposium on Cluster Computing and the Grid (Biogrid 2003 workshop @ CCGrid 2003), May 2003, Tokyo, Japan. pp.138-147, ⟨10.1109/CCGRID.2003.1199421⟩
Conference papers hal-00691663v1
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Using grid technologies to face medical image analysis challenges

Johan Montagnat , Vincent Breton , Isabelle Magnin
Biogrid'03 workshop, May 2003, Tokyo, Japan. pp.588-593
Conference papers hal-00691658v1
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A levelset based method for segmenting the heart in 3D+T gated SPECT images

Arnaud Charnoz , Diane Lingrand , Johan Montagnat
International Workshop on Functional Imaging and Modeling of the Heart (FIMH'03), Jun 2003, Lyon, France. pp.50-59
Conference papers hal-00691656v1
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Medical Image Content-Based Queries using the Grid

Johan Montagnat , Hector Duque , Jean-Marc Pierson , Vincent Breton , Lionel Brunie
1st European HealthGrid conference (HealthGrid 2003), Jan 2003, Lyon, France. pp.138-147
Conference papers hal-00683997v1
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3D graphical models for vascular-stent pose simulation

Leonardo Flórez-Valencia , Johan Montagnat , Maciej Orkisz
International Conference on Computer Vision and Graphics (ICCVG02), Sep 2002, Zakopane, Poland. pp.1-10
Conference papers hal-00691676v1
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3D Quantification of Ultrasound Images: Application to Mouse Embryo Imaging In Vivo

Didier Vray , A. Discher , J. Lefloc'H , W. Mai , Patrick Clarysse
Ultrasonics, Ferroelectrics, and Frequency Control Society (UFFC02), Oct 2002, Munich, Germany. pp.1-10
Conference papers hal-00691671v1

YAV++: a Software Platform for Medical Image Processing and Visualization

Hervé Delingette , Eric Bardinet , David Rey , J.D. Lemarechal , Johan Montagnat
Workshop on Interactive Medical Image Visualization and Analysis satellite symposia of MICCAI, IMIVA'01, 2001, Utrecht, The Netherlands, Netherlands
Conference papers inria-00615901v1
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Compensating Small Head Displacements for an accurate fMRI Registration

Diane Lingrand , Johan Montagnat , Louis D. Collins , Jean Gotman
Scandinavian Conference on Image Analysis (SCIA), Jun 2001, Bergen, Norway. pp.10-16
Conference papers hal-00691688v1
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Automated estimation of brain volume in Multiple Sclerosis with BICCR

Louis D. Collins , Johan Montagnat , A.P. Zijdenbos , Alan Evans
Information Processing in Medical Imaging (IPMPI01), Jun 2001, Davis, CA, United States. pp.1-10
Conference papers hal-00691684v1
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Space and Time Shape Constrained Deformable Surfaces for 4D Medical Image Segmentation

Johan Montagnat , Hervé Delingette
Medical Image Computing and Computer Assisted Intervention (MICCAI00), Oct 2000, Pittsburgh, PA, United States. pp.196-205, ⟨10.1007/978-3-540-40899-4_20⟩
Conference papers inria-00615851v2

A new 3D segmentation of liver neoplasm, portal venous system and parenchymal contours

Luc Soler , Olivier Dourthe , Grégoire Malandain , Johan Montagnat , Hervé Delingette
European Congress of Radiology, 2000, Vienne (Autriche), Austria
Conference papers inria-00615847v1

A Fully Automatic Anatomical, Pathological and Fonctionnal Segmentation from CT-scans for Hepatic Surgery

Luc Soler , Hervé Delingette , Grégoire Malandain , Johan Montagnat , Nicholas Ayache
Medical Imaging 2000, SPIE, 2000, San Diego, United States. pp.246--255
Conference papers inria-00615852v1
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New Algorithms for Controlling Active Contours Shape and Topology

Hervé Delingette , Johan Montagnat
European Conference on Computer Vision (ECCV00), Jun 2000, Dublin, Ireland. pp.381-395
Conference papers inria-00615846v2
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Surface Simplex Meshes for 3D Medical Image Segmentation

Johan Montagnat , Hervé Delingette , Nicolas Scapel , Nicholas Ayache
International Conference on Robotics and Automation (ICRA00), Apr 2000, San Francisco, CA, United States. pp.864 - 870, ⟨10.1109/ROBOT.2000.844158⟩
Conference papers hal-00691695v1
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Cylindrical Echocardiographic Image Segmentation Based on 3D Deformable Models

Johan Montagnat , Hervé Delingette , Grégoire Malandain
Medical Image Computing and Computer-Assisted Intervention - MICCAI'99, Sep 1999, Cambridge, United Kingdom. pp.168-175, ⟨10.1007/10704282_18⟩
Conference papers hal-00691700v1
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General Deformable Model Approach for Model-Based Reconstruction

Hervé Delingette , Johan Montagnat
International Workshop on Model-Based 3D Image Analysis (MB3IA98), Jan 1998, Bombay, India. pp.1-10
Conference papers hal-00691702v1
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A Hybrid Framework for Surface Registration and Deformable Models

Johan Montagnat , Hervé Delingette
Computer Vision and Pattern Recognition (CVPR97), Jun 1997, San Juan, Puerto Rico. pp.1041-1046, ⟨10.1109/CVPR.1997.609458⟩
Conference papers inria-00615782v2
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Volumetric Medical Images Segmentation using Shape Constrained Deformable Models

Johan Montagnat , Hervé Delingette
Computer Vision Virtual reality and Robotics in Medicine (CVRMed97), Mar 1997, Grenoble, France. pp.13-22, ⟨10.1007/BFb0029220⟩
Conference papers inria-00615795v2

Reconstruction surfacique et segmentation robuste à base de maillages déformables

Johan Montagnat , Hervé Delingette
Proceedings of Sixth Orasis conference (ORASIS'97), 1997, La Colle-sur-Loup, France, France
Conference papers inria-00615791v1

Liver Segmentation in Contrast Enhanced Helical CT-Scans

Johan Montagnat , Hervé Delingette , Nicholas Ayache , Jean-Marie Clément , C. Roy
Proceedings of World Congress on Medical Physics and Biomedical Engineering, 1997, Nice, France, France
Conference papers inria-00615792v1

Automatic Segmentation of Portal Vein in CT-Scans of the Liver

Luc Soler , Grégoire Malandain , Johan Montagnat , Hervé Delingette , Nicholas Ayache
Proceedings of World Congress on Medical Physics and Biomedical Engineering, 1997, Nice, France, France. pp.788
Conference papers inria-00615793v1
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Transparent Incremental State Saving in Time Warp Parallel Discrete Event Simulation

Robert Rönngren , Michael Liljenstam , Rassul Ayani , Johan Montagnat
Parallel And Distributed Simulation (PADS96), May 1996, Philadelphia, United States. pp.70-77
Conference papers hal-00691810v1
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A Comparative Study of State Saving Mecanisms for Time Warp Synchronized Parallel Discrete Event Simulation

Robert Rönngren , Michael Liljenstam , Rassul Ayani , Johan Montagnat
Annual Simulation Symposium (ASS'96), Mar 1996, New Orleans, United States. pp.1-10
Conference papers hal-00691812v1
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Translation of Heterogeneous Databases into RDF, and Application to the Construction of a SKOS Taxonomical Reference

Franck Michel , Loïc Djimenou , Catherine Faron Zucker , Johan Montagnat
Web Information Systems and Technologies: 11th International Conference, WEBIST 2015, Revised Selected Papers, 246, Springer, pp.275-296, 2016, Lecture Notes in Business Information Processing, 978-3-319-30995-8. ⟨10.1007/978-3-319-30995-5_14⟩
Book sections hal-01337308v1
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Grid Analysis of Radiological Data

Cecile Germain-Renaud , Vincent Breton , Patrick Clarysse , Bertrand Delhay , Yann Gaudeau
Mario Cannataro (Ed.). Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, IGI, pp.363-391, 2009, chapter 19, ⟨10.4018/978-1-60566-374-6.ch019⟩
Book sections hal-00683992v1
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Workflow Level Parametric Study Support by MOTEUR and the P-GRADE Portal

Tristan Glatard , Gergely Sipos , Johan Montagnat , Zoltan Farkas , Péter Kacsuk
Workflows for e-Science, Springer, chap. 18, 279-299, 2007, ISBN 978-1-84628-519-6
Book sections hal-00682801v1
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xR2RML: Relational and Non-Relational Databases to RDF Mapping Language

Franck Michel , Loïc Djimenou , Catherine Faron Zucker , Johan Montagnat
[Research Report] ISRN I3S/RR 2014-04-FR, CNRS. 2017
Reports hal-01066663v5
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Mapping-based SPARQL access to a MongoDB database

Franck Michel , Catherine Faron Zucker , Johan Montagnat
[Research Report] CNRS. 2016
Reports hal-01245883v5
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A survey of RDB to RDF translation approaches and tools

Franck Michel , Johan Montagnat , Catherine Faron Zucker
[Research Report] I3S. 2014
Reports hal-00903568v2
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Requirements of the SALTY project

Philippe Collet , Mohammed-Amine Abchir , Thierry Bathias , Mireille Blay-Fornarino , Filip Krikava
[Research Report] ???. 2010
Reports hal-00539093v1
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Exploring the Virtual Infrastructures as a Service concept with HIPerNET

Pascale Primet Vicat-Blanc , Guilherme Koslovski , Fabienne Anhalt , Tram Truong Huu , Johan Montagnat
[Research Report] RR-7185, INRIA. 2010, pp.36
Reports inria-00450409v2

HIPCAL: final report

Fabienne Anhalt , Christophe Blanchet , Romaric Guillier , Tram Truong Huu , Guilherme Koslovski
[Research Report] 2010
Reports hal-00790584v1
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MOTEUR: a data-intensive service-based workflow manager

Tristan Glatard , Johan Montagnat , Xavier Pennec , David Emsellem , Diane Lingrand
2006, pp.37
Reports hal-00691832v1
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Optimizing jobs timeouts on clusters and production grids

Tristan Glatard , Johan Montagnat , Xavier Pennec
2006, pp.23
Reports hal-00691828v1
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Flexible Management and Dynamic Control of Network Quality of Service in Grid environments : the QoSinus approach

Pascale Vicat-Blanc Primet , Johan Montagnat , Fabien Chanussot , Mathieu Goutelle
[Research Report] RR-5083, INRIA. 2004
Reports inria-00071500v1
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Representation, Shape, Topology and Evolution of Deformable Surfaces. Application to 3D Medical Image Segmentation

Johan Montagnat , Hervé Delingette , Nicolas Scapel , Nicholas Ayache
[Research Report] RR-3954, INRIA. 2000, pp.69
Reports inria-00072695v1
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Spatial and Temporal Shape Constrained Deformable Surfaces for 3D and 4D Medical Image Segmentation

Johan Montagnat , Hervé Delingette
RR-4078, INRIA. 2000
Reports inria-00072555v1
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Topology and Shape Constraints on Parametric Active Contours

Hervé Delingette , Johan Montagnat
[Research Report] RR-3880, INRIA. 2000, pp.43
Reports inria-00072773v1
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Modèles déformables pour la segmentation et la modélisation d'images médicales 3D et 4D

Johan Montagnat
Imagerie médicale. Université Nice Sophia Antipolis, 1999. Français. ⟨NNT : ⟩
Theses tel-00683368v1
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Segmentation d'image médicales volumiques à l'aide de maillages déformables contraints

Johan Montagnat
Imagerie médicale. École normale supérieure de Cachan - ENS Cachan; Université Paris Sud - Paris XI, 1996. Français. ⟨NNT : ⟩
Theses tel-00691915v1
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Processing and analyzing large medical image sets

Johan Montagnat
Computer Science [cs]. Université Nice Sophia Antipolis, 2006
Habilitation à diriger des recherches tel-00460766v1