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Johann Dreo

Expert Research Engineer, Institut Pasteur
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High-level Biomedical Data Integration in a Semantic Knowledge Graph with OncodashKB for finding Personalized Actionable Drugs in Ovarian Cancer

Johann Dreo , Sebastian Lobentanzer , Ekaterina Gaydukova , Marko Baric , Altti Ilari Maarala
Cancer Genomics, Multiomics and Computational Biology, European Association for Cancer Research, Apr 2024, Bergame, Italy
Conference papers hal-04509599v1
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Interplay of Human and AI Solvers on a Planning Problem

Afshin Ameri E. , Branko Miloradovic , Baran Çürüklü , Alessandro Vittorio Papadopoulos , Mikael Ekström
IEEE International Conference on Systems, Man, and Cybernetics (SMC), IEEE SMC Society, Oct 2023, Maui (Hawaii), United States
Conference papers hal-04116806v1
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Statistical Discovery of Transcriptomic Cancer Signatures using Multimodal Local Search

Emile Zakiev , Johann Dreo , Mara Santarelli , Benno Schwikowski
PGMO Days, Programme Gaspard Monge pour l’Optimisation, la recherche opérationnelle et leurs interactions avec les sciences des données., Nov 2022, Palaiseau, France
Conference papers hal-04110700v1
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Tackling Threatening behavior through a Semantic Approach

Claire Laudy , Simon Fossier , Johann Dreo
25th International Conference on Information Fusion (FUSION), International Society of Information Fusion, Jul 2022, Linköping, Sweden. ⟨10.23919/FUSION49751.2022.9841333⟩
Conference papers hal-04128705v1
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Towards Explainable Exploratory Landscape Analysis: Extreme Feature Selection for Classifying BBOB Functions

Quentin Renau , Johann Dréo , Carola Doerr , Benjamin Doerr
Applications of Evolutionary Computation (EvoApplications 2021), Apr 2021, Sevilla (Virtual), Spain. pp.17-33, ⟨10.1007/978-3-030-72699-7_2⟩
Conference papers hal-03233676v1
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Paradiseo: From a Modular Framework for Evolutionary Computation to the Automated Design of Metaheuristics

Johann Dreo , Arnaud Liefooghe , Sébastien Verel , Marc Schoenauer , Juan J. Merelo
GECCO 2021 - Genetic and Evolutionary Computation Conference, ACM Sigevo, Jul 2021, Lille / Virtual, France. pp.1522-1530, ⟨10.1145/3449726.3463276⟩
Conference papers pasteur-03220556v1
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Towards Large Scale Automated Algorithm Design by Integrating Modular Benchmarking Frameworks

Amine Aziz-Alaoui , Carola Doerr , Johann Dreo
Genetic and Evolutionary Computation Conference (GECCO 2021), Jul 2021, Lille, France. ⟨10.1145/3449726.3463155⟩
Conference papers hal-03233932v1
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Exploratory Landscape Analysis is Strongly Sensitive to the Sampling Strategy

Quentin Renau , Carola Doerr , Johann Dreo , Benjamin Doerr
Parallel Problem Solving from Nature – PPSN XVI (PPSN 2020), Sep 2020, Leiden, Netherlands. pp.139-153, ⟨10.1007/978-3-030-58115-2_10⟩
Conference papers hal-02935385v1
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Netted Multi-Function Radars Positioning and Modes Selection by Non-Holonomic Fast Marching Computation of Highest Threatening Trajectories & by CMA-ES Optimization

Johann Dreo , François Desquilbet , Frederic Barbaresco , Jean-Marie Mirebeau
2019 International Radar Conference (RADAR), Sep 2019, TOULON, France. pp.1-6, ⟨10.1109/RADAR41533.2019.171285⟩
Conference papers hal-03030426v1
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Expressiveness and robustness of landscape features (student workshop paper)

Quentin Renau , Johann Dréo , Carola Doerr , Benjamin Doerr
Genetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.2048-2051, ⟨10.1145/3319619.3326913⟩
Conference papers hal-02179612v1
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Making a case for (Hyper-)parameter tuning as benchmark problems

Carola Doerr , Johann Dréo , Pascal Kerschke
Genetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.1755-1764, ⟨10.1145/3319619.3326857⟩
Conference papers hal-02179587v1
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Coupling the design of benchmark with algorithm in landscape-aware solver design

Johann Dréo , Carola Doerr , Yann Semet
Genetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.1419-1420, ⟨10.1145/3319619.3326821⟩
Conference papers hal-02179604v1
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Per instance algorithm configuration of CMA-ES with limited budget

Nacim Belkhir , Johann Dreo , Pierre Savéant , Marc Schoenauer
GECCO 2017 - Proceedings of the Genetic and Evolutionary Computation Conference , Jul 2017, Berlin, Germany. pp. 681-688
Conference papers hal-01613753v1
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Automatic differentiation of non-holonomic fast marching for computing most threatening trajectories under sensors surveillance

Jean-Marie Mirebeau , Johann Dreo
International Conference on Geometric Science of Information, Nov 2017, Paris, France. pp.791-800
Conference papers hal-01503607v1
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Surrogate Assisted Feature Computation for Continuous Problems

Nacim Belkhir , Johann Dréo , Pierre Savéant , Marc Schoenauer
LION 10 Learning and Intelligent OptimizatioN Conference, May 2016, Ischia, Italy. To appear
Conference papers hal-01303320v2
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Feature Based Algorithm Configuration: A Case Study with Differential Evolution

Nacim Belkhir , Johann Dréo , Pierre Savéant , Marc Schoenauer
Parallel Problem Solving from Nature – PPSN XIV, Sep 2016, Edinburgh, France. pp.156-165, ⟨10.1007/978-3-319-45823-6_15⟩
Conference papers hal-01359539v1
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Solving Large MultiZenoTravel Benchmarks with Divide-and-Evolve

Alexandre Quemy , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
Learning and Intelligent OptimizatioN - LION 9, Jan 2015, Lille, France. pp.262-267
Conference papers hal-01109776v1
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Parameter Setting for Multicore CMA-ES with Large Populations

Nacim Belkhir , Johann Dréo , Pierre Savéant , Marc Schoenauer
Artificial Evolution (EA 2015), Oct 2015, Lyon, France. pp.109-122
Conference papers hal-01236025v1
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Applying MapReduce principle to High level information fusion

Claire Laudy , Johann Dreo , Christophe Gouguenheim
17th International Conference on Information Fusion, International Society on Information Fusion, Jul 2014, Salamanca, Spain. pp.1--8
Conference papers hal-04139064v1
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Multi-Objective AI Planning: Comparing Aggregation and Pareto Approaches

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
EvoCOP -- 13th European Conference on Evolutionary Computation in Combinatorial Optimisation, Apr 2013, Vienna, Austria. pp.202-213, ⟨10.1007/978-3-642-37198-1_18⟩
Conference papers hal-00820634v1
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Multi-Objective AI Planning: Evaluating DAE-YAHSP on a Tunable Benchmark

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
EMO'13 - 7th International Conference on Evolutionary Multi-Criterion Optimization, Mar 2013, Sheffield, United Kingdom. pp.36-50
Conference papers hal-00750560v1
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Pareto-Based Multiobjective AI Planning

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
IJCAI 2013, IJCAI/AAAI, Aug 2013, Beijing, China. pp.2321-2327
Conference papers hal-00835003v2
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Quality Measures of Parameter Tuning for Aggregated Multi-Objective Temporal Planning

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
LION7 - Learning and Intelligent OptimizatioN Conference, Jan 2013, Catania, Italy. pp.341-356
Conference papers hal-00820617v1

Les fourmis artificielles pour l'optimisation en variables continues

Patrick Siarry , Johann Dréo , Nicolas Monmarché
Nicolas Monmarché, Frédéric Guinand and Patrick Siarry. Fourmis artificielles, des bases de l'optimisation aux applications industrielles, volume 1, Hermès-Lavoisier, chap. 4, 2009
Book sections hal-01067298v1
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Quantile-like measures on multi-dimensional distributions of closed sets

Johann Dreo
Doctoral. Innovation, Design, and Engineering, Västerås [Sweden], France. 2023
Lectures hal-04110682v1
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AutoML for Bioinformatics

Johann Dréo
Doctoral. Computational Biology Seminars, France. 2022, pp.31
Lectures hal-04125770v1
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Feedback on the use of PDDL solvers in an industrial R&D context

Johann Dreo
Doctoral. Innovation, Design, and Engineering, Västerås [Sweden], France. 2022
Lectures hal-04110686v1
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De la planification centralisée à l’intelligence en essaim avec des drones

Johann Dreo
DEUG. Startech, Paris, France. 2022, pp.27
Lectures hal-04110668v1
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Practical Tools for Improving Reproducibility (of Bioinformatics)

Johann Dreo
Doctoral. Precision Medicine at the Interface of Translational Research and Systems Medicine, Paris, France. 2021, pp.37
Lectures hal-04127255v1
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Randomized Optimization Framework tailored for Benchmarking & Auto-Design

Johann Dreo
Benchmarked workshop, May 2022, Leiden, France. 2022
Conference poster hal-04110712v1
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UNIX Shell Cheatsheet

Johann Dréo
Computational Systems Biomedicine Seminars, Nov 2022, Paris, France
Conference poster hal-04118265v1
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Using Irace, Paradiseo and IOHprofiler for Large-Scale Algorithm Configuration

Johann Dreo , Carola Doerr , Amine Aziz-Alaoui , Alix Zheng
8th COSEAL workshop, Sep 2021, Online, France. 2021
Conference poster hal-04110704v1