Johann Dreo

56
Documents
Affiliation actuelle
  • Institut Pasteur [Paris] (IP)
Contact

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Publications

Image document

First High-Level Information Fusion Competition: Feedback and Lessons Learned

Claire Laudy , Victoria Alonso , Céline Reverdy , Johann Dreo
28th Inernational Conference on Information Fusion, International Society of Information Fusion, Jul 2025, Rio de Janeiro, Brazil
Communication dans un congrès pasteur-05121854 v1
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Analyzing Single-objective Black-box Optimization Algorithms Using the Empirical Attainment Function

Manuel López-Ibáñez , Diederick Vermetten , Johann Dreo , Carola Doerr
Genetic and Evolutionary Computation Conference, Association for Computing Machinery, Jul 2025, Malaga, Spain. ⟨10.1145/3712255.3734242⟩
Communication dans un congrès pasteur-05121863 v1
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IA métissée : quand données et symboles s’enlacent

Johann Dreo
Pint of Science, May 2025, Paris, France
Communication dans un congrès pasteur-05101533 v1
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Using OntoWeaver to Integrate Heterogeneous Information in the OncodashKB Semantic Knowledge Graph for Finding Personalized Actionable Drugs in Ovarian Cancer

Matthieu Najm , Marko Baric , Taru Muranen , Ekaterina Gaydukova , Altti Ilari Maarala et al.
JOBIM, Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France
Communication dans un congrès pasteur-05121901 v1
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Engaging the public in scientific research to enhance digital twins of the ocean and their practical applications

Luigi Ceccaroni , Stephen Parkinson , Dror Angel , Johann Dreo , Dori Edelist et al.
OCEAN, IEEE Oceanic Engineering Society, Jun 2025, Brest, France
Communication dans un congrès pasteur-05121951 v1
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Intégration reproductible d'informations de haut niveau dans des graphes de connaissances sémantiques avec OntoWeaver et BioCypher, application en oncologie et en écologie

Johann Dreo , Claire Laudy , Sebastian Lobentanzer , Marko Baric , Ekaterina Gaydukova et al.
Journées ouvertes en biologie, informatique et mathématiques, Société Française de BioInformatique; Institut Français de Bioinformatique (IFB); Groupement de Recherche Bioinformatique Moléculaire (GDR BIM), Jun 2024, Toulouse, France
Communication dans un congrès pasteur-05101167 v1
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High-level Biomedical Data Integration in a Semantic Knowledge Graph with OncodashKB for finding Personalized Actionable Drugs in Ovarian Cancer

Johann Dreo , Sebastian Lobentanzer , Ekaterina Gaydukova , Marko Baric , Altti Ilari Maarala et al.
Cancer Genomics, Multiomics and Computational Biology, European Association for Cancer Research, Apr 2024, Bergame, Italy
Communication dans un congrès hal-04509599 v1

Ealain: A Camera Simulation Tool to Generate Instances for Multiple Classes of Optimisation Problem

Quentin Renau , Johann Dreo , Emma Hart
GECCO '24 Companion: Genetic and Evolutionary Computation Conference Companion, Association for Computing Machinery, Jul 2024, Melbourne VIC Australia, France. pp.151-154, ⟨10.1145/3638530.3654299⟩
Communication dans un congrès pasteur-05122017 v1
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Interplay of Human and AI Solvers on a Planning Problem

Afshin Ameri E. , Branko Miloradovic , Baran Çürüklü , Alessandro Vittorio Papadopoulos , Mikael Ekström et al.
IEEE International Conference on Systems, Man, and Cybernetics (SMC), IEEE SMC Society, Oct 2023, Maui (Hawaii), United States
Communication dans un congrès hal-04116806 v1
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Consistent Symbolic Data Integration with OntoWeaver

Johann Dreo
Journée annuelle du groupe de travail sur la biologie systémique symbolique (GT BIOSS), CNRS, Nov 2023, Lille, France
Communication dans un congrès pasteur-05101157 v1
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Tackling Threatening behavior through a Semantic Approach

Claire Laudy , Simon Fossier , Johann Dreo
25th International Conference on Information Fusion (FUSION), International Society of Information Fusion, Jul 2022, Linköping, Sweden. ⟨10.23919/FUSION49751.2022.9841333⟩
Communication dans un congrès hal-04128705 v1
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Statistical Discovery of Transcriptomic Cancer Signatures using Multimodal Local Search

Emile Zakiev , Johann Dreo , Mara Santarelli , Benno Schwikowski
PGMO Days, Programme Gaspard Monge pour l’Optimisation, la recherche opérationnelle et leurs interactions avec les sciences des données., Nov 2022, Palaiseau, France
Communication dans un congrès hal-04110700 v1
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Automated Algorithm Selection for Radar Network Configuration

Quentin Renau , Johann Dreo , Alain Peres , Yann Semet , Carola Doerr et al.
GECCO '22: Genetic and Evolutionary Computation Conference, Jul 2022, Boston, United States. ⟨10.1145/3512290.3528825⟩
Communication dans un congrès hal-03718883 v1
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Paradiseo: From a Modular Framework for Evolutionary Computation to the Automated Design of Metaheuristics

Johann Dreo , Arnaud Liefooghe , Sébastien Verel , Marc Schoenauer , Juan J. Merelo et al.
GECCO 2021 - Genetic and Evolutionary Computation Conference, ACM Sigevo, Jul 2021, Lille / Virtual, France. pp.1522-1530, ⟨10.1145/3449726.3463276⟩
Communication dans un congrès pasteur-03220556 v1
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Towards Explainable Exploratory Landscape Analysis: Extreme Feature Selection for Classifying BBOB Functions

Quentin Renau , Johann Dréo , Carola Doerr , Benjamin Doerr
Applications of Evolutionary Computation (EvoApplications 2021), Apr 2021, Sevilla (Virtual), Spain. pp.17-33, ⟨10.1007/978-3-030-72699-7_2⟩
Communication dans un congrès hal-03233676 v1
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Towards Large Scale Automated Algorithm Design by Integrating Modular Benchmarking Frameworks

Amine Aziz-Alaoui , Carola Doerr , Johann Dreo
Genetic and Evolutionary Computation Conference (GECCO 2021), Jul 2021, Lille, France. ⟨10.1145/3449726.3463155⟩
Communication dans un congrès hal-03233932 v1
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Exploratory Landscape Analysis is Strongly Sensitive to the Sampling Strategy

Quentin Renau , Carola Doerr , Johann Dreo , Benjamin Doerr
Parallel Problem Solving from Nature – PPSN XVI (PPSN 2020), Sep 2020, Leiden, Netherlands. pp.139-153, ⟨10.1007/978-3-030-58115-2_10⟩
Communication dans un congrès hal-02935385 v1
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Making a case for (Hyper-)parameter tuning as benchmark problems

Carola Doerr , Johann Dréo , Pascal Kerschke
Genetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.1755-1764, ⟨10.1145/3319619.3326857⟩
Communication dans un congrès hal-02179587 v1
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Netted Multi-Function Radars Positioning and Modes Selection by Non-Holonomic Fast Marching Computation of Highest Threatening Trajectories & by CMA-ES Optimization

Johann Dreo , François Desquilbet , Frederic Barbaresco , Jean-Marie Mirebeau
2019 International Radar Conference (RADAR), Sep 2019, TOULON, France. pp.1-6, ⟨10.1109/RADAR41533.2019.171285⟩
Communication dans un congrès hal-03030426 v1
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Expressiveness and robustness of landscape features (student workshop paper)

Quentin Renau , Johann Dréo , Carola Doerr , Benjamin Doerr
Genetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.2048-2051, ⟨10.1145/3319619.3326913⟩
Communication dans un congrès hal-02179612 v1
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Coupling the design of benchmark with algorithm in landscape-aware solver design

Johann Dréo , Carola Doerr , Yann Semet
Genetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.1419-1420, ⟨10.1145/3319619.3326821⟩
Communication dans un congrès hal-02179604 v1
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Automatic differentiation of non-holonomic fast marching for computing most threatening trajectories under sensors surveillance

Jean-Marie Mirebeau , Johann Dreo
International Conference on Geometric Science of Information, Nov 2017, Paris, France. pp.791-800
Communication dans un congrès hal-01503607 v1
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Per instance algorithm configuration of CMA-ES with limited budget

Nacim Belkhir , Johann Dreo , Pierre Savéant , Marc Schoenauer
GECCO 2017 - Proceedings of the Genetic and Evolutionary Computation Conference , Jul 2017, Berlin, Germany. pp. 681-688
Communication dans un congrès hal-01613753 v1
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Feature Based Algorithm Configuration: A Case Study with Differential Evolution

Nacim Belkhir , Johann Dréo , Pierre Savéant , Marc Schoenauer
Parallel Problem Solving from Nature – PPSN XIV, Sep 2016, Edinburgh, United Kingdom. pp.156-165, ⟨10.1007/978-3-319-45823-6_15⟩
Communication dans un congrès hal-01359539 v1
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Parameter Setting for Multicore CMA-ES with Large Populations

Nacim Belkhir , Johann Dréo , Pierre Savéant , Marc Schoenauer
Artificial Evolution (EA 2015), Oct 2015, Lyon, France. pp.109-122
Communication dans un congrès hal-01236025 v1
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Surrogate Assisted Feature Computation for Continuous Problems

Nacim Belkhir , Johann Dréo , Pierre Savéant , Marc Schoenauer
LION 10 Learning and Intelligent OptimizatioN Conference, May 2016, Ischia, Italy. To appear
Communication dans un congrès hal-01303320 v2
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Solving Large MultiZenoTravel Benchmarks with Divide-and-Evolve

Alexandre Quemy , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
Learning and Intelligent OptimizatioN - LION 9, Jan 2015, Lille, France. pp.262-267
Communication dans un congrès hal-01109776 v1
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Applying MapReduce principle to High level information fusion

Claire Laudy , Johann Dreo , Christophe Gouguenheim
17th International Conference on Information Fusion, International Society on Information Fusion, Jul 2014, Salamanca, Spain. pp.1--8
Communication dans un congrès hal-04139064 v1
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Multi-Objective AI Planning: Comparing Aggregation and Pareto Approaches

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
EvoCOP -- 13th European Conference on Evolutionary Computation in Combinatorial Optimisation, Apr 2013, Vienne, Austria. pp.202-213, ⟨10.1007/978-3-642-37198-1_18⟩
Communication dans un congrès hal-00820634 v1
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Multi-Objective AI Planning: Evaluating DAE-YAHSP on a Tunable Benchmark

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
EMO'13 - 7th International Conference on Evolutionary Multi-Criterion Optimization, Mar 2013, Sheffield, United Kingdom. pp.36-50
Communication dans un congrès hal-00750560 v1
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Quality Measures of Parameter Tuning for Aggregated Multi-Objective Temporal Planning

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
LION7 - Learning and Intelligent OptimizatioN Conference, Jan 2013, Catane, Italy. pp.341-356
Communication dans un congrès hal-00820617 v1
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Pareto-Based Multiobjective AI Planning

Mostepha Redouane Khouadjia , Marc Schoenauer , Vincent Vidal , Johann Dréo , Pierre Savéant
IJCAI 2013, IJCAI/AAAI, Aug 2013, Beijing, China. pp.2321-2327
Communication dans un congrès hal-00835003 v2
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Mathematical Optimization with Stochastic Metaheuristics

Johann Dreo
Institut Pasteur's Computational Biology Department Seminars, Mar 2024, Paris, France
Poster de conférence pasteur-05122204 v1
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Randomized Optimization Framework tailored for Benchmarking & Auto-Design

Johann Dreo
Benchmarked workshop, May 2022, Leiden, France. 2022
Poster de conférence hal-04110712 v1
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UNIX Shell Cheatsheet

Johann Dréo
Computational Systems Biomedicine Seminars, Nov 2022, Paris, France
Poster de conférence hal-04118265 v1
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Using Irace, Paradiseo and IOHprofiler for Large-Scale Algorithm Configuration

Johann Dreo , Carola Doerr , Amine Aziz-Alaoui , Alix Zheng
8th COSEAL workshop, Sep 2021, Online, France. 2021
Poster de conférence hal-04110704 v1
Image document

Quantile-like measures on multi-dimensional distributions of closed sets

Johann Dreo
Doctoral. Innovation, Design, and Engineering, Västerås [Sweden], France. 2023
Cours hal-04110682 v1
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De la planification centralisée à l’intelligence en essaim avec des drones

Johann Dreo
DEUG. Startech, Paris, France. 2022, pp.27
Cours hal-04110668 v1
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Feedback on the use of PDDL solvers in an industrial R&D context

Johann Dreo
Doctoral. Innovation, Design, and Engineering, Västerås [Sweden], France. 2022
Cours hal-04110686 v1
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AutoML for Bioinformatics

Johann Dréo
Doctoral. Computational Biology Seminars, France. 2022, pp.31
Cours hal-04125770 v1
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Practical Tools for Improving Reproducibility (of Bioinformatics)

Johann Dreo
Doctoral. Precision Medicine at the Interface of Translational Research and Systems Medicine, Paris, France. 2021, pp.37
Cours hal-04127255 v1

Les fourmis artificielles pour l'optimisation en variables continues

Patrick Siarry , Johann Dréo , Nicolas Monmarché
Nicolas Monmarché, Frédéric Guinand and Patrick Siarry. Fourmis artificielles, des bases de l'optimisation aux applications industrielles, volume 1, Hermès-Lavoisier, chap. 4, 2009
Chapitre d'ouvrage hal-01067298 v1