Jean-Olivier IRISSON

133

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541740

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joirisson
0000-0003-4920-3880
IdRef : 174736940

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Publications

	Harmful Ostreopsis cf. ovata blooms could extend in time span with climate change in the Western Mediterranean Sea Salomé Fabri-Ruiz , Elisa Berdalet , Caroline Ulses , Samuel Somot , M. Vila Science of the Total Environment, 2024, 947, pp.174726. ⟨10.1016/j.scitotenv.2024.174726⟩ Journal articles hal-04652166v1
	First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices Mathilde Dugenne , Marco Corrales-Ugalde , Jessica Luo , Rainer Kiko , Todd O'Brien Earth System Science Data, 2024, 16 (6), pp.2971-2999. ⟨10.5194/essd-16-2971-2024⟩ Journal articles hal-04648046v1
	Machine learning in marine ecology: an overview of techniques and applications Peter Rubbens , Stephanie Brodie , Tristan Cordier , Diogo Destro Barcellos , Paul Devos ICES Journal of Marine Science, 2023, 80 (7), pp.1829-1853. ⟨10.1093/icesjms/fsad100⟩ Journal articles hal-04284704v1
	Mistaking plastic for zooplankton: Risk assessment of plastic ingestion in the Mediterranean sea S. Fabri-Ruiz , A. Baudena , F. Moullec , F. Lombard , J.-O. Irisson Science of the Total Environment, 2023, 856 (Part 2), pp.159011. ⟨10.1016/j.scitotenv.2022.159011⟩ Journal articles hal-03959364v1
	Machine Learning for the Study of Plankton and Marine Snow from Images Jean-Olivier Irisson , Sakina-Dorothée Ayata , Dhugal Lindsay , Lee Karp-Boss , Lars Stemmann Annual Review of Marine Science, 2022, 14 (1), ⟨10.1146/annurev-marine-041921-013023⟩ Journal articles hal-03335138v1
	Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning Laetitia Drago , Thelma Panaïotis , Jean-Olivier Irisson , Marcel Babin , Tristan Biard Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.894372⟩ Journal articles hal-03810062v1
	Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions Juan José Pierella Karlusich , Fabien Lombard , Jean-Olivier Irisson , Chris Bowler , Rachel Foster Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.878803⟩ Journal articles hal-03956267v1
	Patterns of mesozooplankton community composition and vertical fluxes in the global ocean Yawouvi Dodji Soviadan , Fabio Benedetti , Manoela Brandão , Sakina-Dorothée Ayata , Jean-Olivier Irisson Progress in Oceanography, 2022, pp.102717. ⟨10.1016/j.pocean.2021.102717⟩ Journal articles hal-03449715v1
	Content-Aware Segmentation of Objects Spanning a Large Size Range: Application to Plankton Images Thelma Panaïotis , Louis Caray--Counil , Ben Woodward , Moritz S Schmid , Dominic Daprano Frontiers in Marine Science, 2022, 9, pp.870005. ⟨10.3389/fmars.2022.870005⟩ Journal articles hal-03790583v1
	Temporal fluctuations in zooplankton size, abundance, and taxonomic composition since 1995 in the North Western Mediterranean Sea Guillaume Feuilloley , Jean-Marc Fromentin , Claire Saraux , Jean-Olivier Irisson , Laetitia Jalabert ICES Journal of Marine Science, 2022, 79 (3), pp.882-900. ⟨10.1093/icesjms/fsab190⟩ Journal articles hal-03374991v1
	A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5 Rainer Kiko , Marc Picheral , David Antoine , Marcel Babin , Léo Berline Earth System Science Data, 2022, 14 (9), pp.4315-4337. ⟨10.5194/essd-14-4315-2022⟩ Journal articles hal-03794258v1
	Evidence for a consistent use of external cues by marine fish larvae for orientation Igal Berenshtein , Robin Faillettaz , Jean-Olivier Irisson , Moshe Kiflawi , Ulrike Siebeck Communications Biology, 2022, 5 (1), pp.1307. ⟨10.1038/s42003-022-04137-7⟩ Journal articles hal-03954337v1
	Patterns of mesozooplankton community composition and vertical fluxes in the global ocean Yawouvi Dodji Soviadan , Fabio Benedetti , Manoela Brandão , Sakina-Dorothée Ayata , Jean-Olivier Irisson Progress in Oceanography, 2022, 200, pp.102717. ⟨10.1016/j.pocean.2021.102717⟩ Journal articles hal-04670789v1
	The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms Marc Picheral , Camille Catalano , Denis Brousseau , Hervé Claustre , Laurent Coppola Limnology and Oceanography: Methods, 2022, ⟨10.1002/lom3.10475⟩ Journal articles hal-03508179v1
	Correcting estimations of copepod volume from 2-dimensional images Cédric Dubois , Jean Olivier Irisson , Eric Debreuve Limnology and Oceanography : methods, 2022, 20 (6), pp.361-371. ⟨10.1002/lom3.10492⟩ Journal articles hal-03698136v2
	Machine learning techniques to characterize functional traits of plankton from image data Eric C. Orenstein , Sakina-Dorothée Ayata , Frédéric Maps , Érica C. Becker , Fabio Benedetti Limnology and Oceanography, 2022, 67 (8), pp.1647-1669. ⟨10.1002/lno.12101⟩ Journal articles hal-03482282v2
	Macroscale patterns of oceanic zooplankton composition and size structure Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩ Journal articles hal-03318806v1
	Marine snow morphology illuminates the evolution of phytoplankton blooms and determines their subsequent vertical export Emilia Trudnowska , Léo Lacour , Mathieu Ardyna , Andreas Rogge , Jean Olivier Irisson Nature Communications, 2021, 12 (1), pp.2816. ⟨10.1038/s41467-021-22994-4⟩ Journal articles hal-03230967v1
	Impact of dust addition on Mediterranean plankton communities under present and future conditions of pH and temperature: an experimental overview Frédéric Gazeau , Céline Ridame , France van Wambeke , Samir Alliouane , Christian Stolpe Biogeosciences, 2021, 18 (17), pp.5011-5034. ⟨10.5194/bg-18-5011-2021⟩ Journal articles hal-03342476v1
	Trait‐based approach using in situ copepod images reveals contrasting ecological patterns across an Arctic ice melt zone Laure Vilgrain , Frederic Maps , Marc Picheral , Marcel Babin , Cyril Aubry Limnology and Oceanography, 2021, 66 (4), pp.1155-1167. ⟨10.1002/lno.11672⟩ Journal articles hal-03119903v1
	Sinking Organic Particles in the Ocean—Flux Estimates From in situ Optical Devices Sarah Lou Carolin Giering , Emma Louise Cavan , Sünnje Linnéa Basedow , Nathan Briggs , Adrian B Burd Frontiers in Marine Science, 2020, 6, ⟨10.3389/fmars.2019.00834⟩ Journal articles hal-03043052v1
	Spatio-temporal patterns of larval fish settlement in the northwestern Mediterranean Sea Robin Faillettaz , Raphaël Voué , Romain Crec'Hriou , Laure-Hélène Garsi , Gilles Lecaillon Marine Ecology Progress Series, In press, ⟨10.3354/meps13191⟩ Journal articles hal-02478582v1
	The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area Fabio Benedetti , Laëtitia Jalabert , Marc Sourisseau , Beatriz Becker , Caroline Cailliau Frontiers in Marine Science, 2019, 6, pp.214. ⟨10.3389/fmars.2019.00214⟩ Journal articles hal-02125435v1
	Orientation of Mediterranean fish larvae varies with location Amélie Rossi , Jean-Olivier Irisson , Marc Levaray , Pasqualini Vanina , Sylvia Agostini Marine Biology, 2019, 166 (8), ⟨10.1007/S00227-019-3548-7⟩ Journal articles hal-03498519v1
	Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea Fabio Benedetti , Sakina-Dorothée Ayata , Jean-Olivier Irisson , Fanny Adloff , François Guilhaumon Diversity and Distributions, 2019, Conservation Biogeography in a changing climate, 25 (4), pp.568-581. ⟨10.1111/ddi.12857⟩ Journal articles hal-02108192v1
	Globally Consistent Quantitative Observations of Planktonic Ecosystems Fabien Lombard , Emmanuel Boss , Anya M Waite , Meike Vogt , Julia Uitz Frontiers in Marine Science, 2019, 6, pp.196. ⟨10.3389/fmars.2019.00196⟩ Journal articles hal-02325576v1
	Ocean Solutions to Address Climate Change and Its Effects on Marine Ecosystems Jean-Pierre Gattuso , Alexandre Magnan , Laurent Bopp , William Cheung , Carlos M. Duarte Frontiers in Marine Science, 2018, 5, pp.337. ⟨10.3389/fmars.2018.00337⟩ Journal articles hal-02021326v1
	Swimming speeds of Mediterranean settlement-stage fish larvae nuance Hjort's aberrant drift hypothesis Robin Faillettaz , Elysanne Durand , Claire B Paris , Philippe Koubbi , Jean-Olivier Irisson Limnology and Oceanography, 2018, 63 (2), pp.509 - 523. ⟨10.1002/lno.10643⟩ Journal articles hal-01778008v1
	Automated plankton image analysis using convolutional neural networks Jessica Y. Luo , Jean-Olivier Irisson , Benjamin Graham , Cédric Guigand , Amin Sarafaz Limnology and Oceanography : methods, 2018, 16 (12), pp.814-827. ⟨10.1002/lom3.10285⟩ Journal articles hal-03390539v1
	Regionalisation of the Mediterranean basin, a MERMEX synthesis Sakina-Dorothée Ayata , Jean-Olivier Irisson , Anais Aubert , L. Berline , Jean-Claude Dutay Progress in Oceanography, 2018, 163, pp.7-20. ⟨10.1016/j.pocean.2017.09.016⟩ Journal articles hal-01629104v1
	Larval Fish Swimming Behavior Alters Dispersal Patterns From Marine Protected Areas in the North-Western Mediterranean Sea Robin Faillettaz , Claire B. Paris , Jean-Olivier Irisson Frontiers in Marine Science, 2018, 5, ⟨10.3389/fmars.2018.00097⟩ Journal articles hal-03505066v1
	Biogeochemical regions of the Mediterranean Sea: an objective multidimensional and multivariate environmental approach Gabriel Reygondeau , Cécile Guieu , Fabio Benedetti , Jean-Olivier Irisson , Sakina-Dorothée Ayata Progress in Oceanography, 2017, ⟨10.1016/j.pocean.2016.11.001⟩ Journal articles hal-01409074v1
	Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research Guillem Chust , Meike Vogt , Fabio Benedetti , Teofil Nakov , Sébastien Villéger Frontiers in Marine Science, 2017, 4, pp.68. ⟨10.3389/fmars.2017.00068⟩ Journal articles hal-01545318v1
	Diagnostic delay of pyogenic vertebral osteomyelitis and its associated factors M. Jean , Jean-Olivier Irisson , G. Gras , F. Bouchand , D. Simo SCANDINAVIAN JOURNAL OF RHEUMATOLOGY, 2017, 46 (1), pp.64-68. ⟨10.3109/03009742.2016.1158314⟩ Journal articles hal-03502963v1
	The relationship between heterotrophic feeding and inorganic nutrient availability in the scleractinian coral T-reniformis under a short-term temperature increase Leïla Ezzat , Erica Towle , Jean-Olivier Irisson , Chris Langdon , Christine Ferrier-Pagès Limnology and Oceanography, 2016, 61 (1), pp.89-102. ⟨10.1002/lno.10200⟩ Journal articles hal-03502982v1
	Imperfect automatic image classification successfully describes plankton distribution patterns Robin Faillettaz , Marc Picheral , Jessica Y. Luo , Cédric Guigand , Robert K. Cowen Methods in Oceanography, 2016, ⟨10.1016/j.mio.2016.04.003⟩ Journal articles hal-01324904v1
	A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience A. Crise , H. Kaberi , J. Ruiz , A. Zatsepin , E. Arashkevich Marine Pollution Bulletin, 2015, 95 (1), pp.28-39. ⟨10.1016/j.marpolbul.2015.03.024⟩ Journal articles hal-01169407v1
	Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability E. L. Howes , L. Stemmann , C. Assailly , J. -O. Irisson , M. Dima Marine Ecology Progress Series, 2015, 531, pp.193-206. ⟨10.3354/meps11322⟩ Journal articles hal-03502730v1
	With a Little Help from My Friends: Group Orientation by Larvae of a Coral Reef Fish Jean-Olivier Irisson , Claire B. Paris , Jeffrey M. Leis , Michelle N. Yerman PLoS ONE, 2015, 10 (12), pp.e0144060. ⟨10.1371/journal.pone.0144060⟩ Journal articles hal-01277844v1
	Sun-Compass Orientation in Mediterranean Fish Larvae Robin Faillettaz , Agathe Blandin , Claire B. Paris , Philippe Koubbi , Jean-Olivier Irisson PLoS ONE, 2015, 10 (8), pp.e0135213. ⟨10.1371/journal.pone.0135213⟩ Journal articles hal-01233449v1
	Seismic monitoring in the oceans by autonomous floats Alexey Sukhovich , Sébastien Bonnieux , Yann Hello , Jean-Olivier Irisson , Frederik J. Simons Nature Communications, 2015, 6, pp.8027 ⟨10.1038/ncomms9027⟩ Journal articles insu-01235776v1
	Orientation of fish larvae in situ is consistent among locations, years and methods, but varies with time of day Jeffrey M. Leis , Claire B. Paris , Jean-Olivier Irisson , Michelle N. Yerman , Ulrike E. Siebeck Marine Ecology Progress Series, 2014, 505, pp.193-208. ⟨10.3354/meps10792⟩ Journal articles hal-03502779v1
	Automatic recognition of T and teleseismic P waves by statistical analysis of their spectra: An application to continuous records of moored hydrophones Alexey Sukhovich , Jean-Olivier Irisson , Julie Perrot , Guust Nolet Journal of Geophysical Research, 2014, 119 (8), pp.6469-6485. ⟨10.1002/2013JB010936⟩ Journal articles insu-01058954v1
	Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front Jessica Y. Luo , Benjamin Grassian , Dorothy Tang , Jean-Olivier Irisson , Adam T. Greer Marine Ecology Progress Series, 2014, 510, pp.129-149. ⟨10.3354/meps10908⟩ Journal articles hal-03502777v1
	Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in East Antarctica Carolina Giraldo , Patrick Mayzaud , Eric Tavernier , Jean-Olivier Irisson , Florian Penot Marine Biology, 2013, 160 (4), pp.877-887 Journal articles hal-00936923v1
	Effect of gaseous cement industry effluents on four species of microalgae Amélie Talec , Myrvline Philistin , Frédérique Ferey , Günther Walenta , Jean-Olivier Irisson Bioresource Technology, 2013, 143, pp.353 - 359. ⟨10.1016/j.biortech.2013.05.104⟩ Journal articles hal-00852260v1
	Reef Odor: A Wake Up Call for Navigation in Reef Fish Larvae Claire B. Paris , Jelle Atema , Jean-Olivier Irisson , Michael Kingsford , Gabriele Gerlach PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0072808⟩ Journal articles hal-03502626v1
	Identifying coral reef fish larvae through DNA barcoding : a test case with the families Acanthuridae and Holocentridae Nicolas Hubert , Erwan Delrieu-Trottin , Jean-Olivier Irisson , Christopher Meyer , Serge Planes Molecular Phylogenetics and Evolution, 2010, 55 (3), pp.1195-1203 Journal articles hal-00609382v1
	Biophysical modelling to investigate the effects of climate change on marine population dispersal and connectivity Christophe Lett , Sakina-Dorothée Ayata , Martin Huret , Jean-Olivier Irisson Progress in Oceanography, 2010, 87 (1-4, SI), pp.106-113. ⟨10.1016/j.pocean.2010.09.005⟩ Journal articles hal-01218855v1
	In situ observation of settlement behaviour in larvae of coral reef fishes at night Jean-Olivier Irisson , David Lecchini Journal of Fish Biology, 2008, 72, pp.1-7. ⟨10.1111/j.1095-8649.2008.01868.x⟩ Journal articles halsde-00293976v1

	In situ imaging highlight the important role of giant mesopelagic protists in the biogeochemical cycles of carbon and silicon Manon Laget , Laetitia Drago , Thelma Panaiotis , Rainer Kiko , Lars Stemmann 2024 Ocean Sciences Meeting, 2024, New Orleans, Louisiana, United States Conference papers hal-04638966v1
	Use of CMIP6 biogeochemical simulations to assess the effect of climate forcing on plankton size structure Marco Vinicio Corrales , Colleen Petrik , Mathilde Dugenne , Todd O'Brien , Lars Stemmann 2024 Ocean Sciences Meeting, 2024, New Orleans, Louisiana, United States Conference papers hal-04638965v1
	Travaux récents sur le zooplancton Arctique Sakina-Dorothée Ayata , Frédéric Maps , Jean-Olivier Irisson Colloque Université Laval - Sorbonne Université sur les Sciences Marines Arctiques, May 2023, Paris, France Conference papers hal-04230345v1
	Morphological diversity increases with decreasing resources along a zooplankton time series Miriam Beck , Lionel Guidi , Lars Stemmann , Sakina-Dorothée Ayata , Jean-Olivier Irisson ASLO Aquatic Sciences Meeting, 2023, Palma de Mallorca, Spain Conference papers hal-04639094v1
	Easily Interpretable, Non-parametric Sample Transformation for Classification Cédric Dubois , Jean-Olivier Irisson , Eric Debreuve Colloque GRETSI (Groupe de Recherche et d'Etudes de Traitement du Signal et des Images), Sep 2022, Nancy, France Conference papers hal-03866959v1
	EcoTaxa: a tool to support the taxonomic classification of large datasets through supervised machine learning Jean-Olivier Irisson , Laurent Salinas , Sebastien Colin , Team Complex , Marc Picheral SFEcologie 2022, 2022, Metz, France Conference papers hal-04026447v1
	Machine learning for plankton and particles images: from pictures to data Jean-Olivier Irisson , Team Complex Imaginecology, 2022, Lyon, France Conference papers hal-04026446v1
	A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits Miriam Beck , Sakina-Dorothée Ayata , Marc Picheral , Fabien Lombard , Rainer Kiko SFEcologie 2022, 2022, Metz, France Conference papers hal-04026448v1
	Morphological diversity increases with oligotrophy along a zooplankton time-series M. Beck , S.D. Ayata , C. Cailleton , L. Stemmann , L Guidi 4th Marine Imaging Workshop, 2022, Brest, France Conference papers hal-04024037v1
	Observing plankton in the open ocean with quantitative imaging Jean-Olivier Irisson Sustainability Research and Innovation Congress, 2022, Pretoria, South Africa Conference papers hal-04026445v1
	Fat chance : estimating the lipid content of Arctic zooplankton from in situ images Frédéric Maps , Alexandra Mercier , Eric C Orenstein , Laure Vilgrain , Jean-Olivier Irisson SFE2 GFÖ EEF 2022 Conference, SFE2 GFÖ EEF, Nov 2022, Metz, France Conference papers hal-04230315v1
	Astaxanthin as an indicator of copepod fitness - From indiviudal pigmentation to ecosystem functioning Laure Vilgrain , Frédéric Maps , Emilia Trudnowska , Sünnje Linnéa Basedow , Barbara Niehoff Fourth ICES PICES Early Career Scientist Conference, Jul 2022, St Johns, Newfoundland, Canada Conference papers hal-04230329v1
	Could color be an indicator of copepod fitness? A focus on carotenoid pigmentation Laure Vilgrain , Frederic Maps , Emilia Trudnowska , Sünnje L. Basedow , Amin Madoui Aquatic Sciences Meeting, 2021, Online, Unknown Region Conference papers hal-04026438v1
	Working towards integration of new data describing biological essential ocean variables from marine coastal ecosystems Veronique Creach , Patricia Cabrera , Luis Felipe Artigas , Gérald Grégori , Jean-Olivier Irisson ASLO 2021 Aquatic Sciences Meeting, Jun 2021, Virtual, Unknown Region Conference papers hal-04026440v1
	Exploring and exploiting new tools for functional trait extraction from in situ plankton images Eric C. Orenstein , Frederic Maps , Sakina-Dorothée Ayata , Jean-Olivier Irisson Aquatic Sciences Meeting, 2021, Online, Unknown Region Conference papers hal-04026439v1
	Correction of the estimation of the volume of copepods from 2-dimensional in situ images Cédric Dubois , Jean-Olivier Irisson , Eric Debreuve ASLO Aquatic Sciences Meeting, Jun 2021, Online, Spain Conference papers hal-03449924v1
	Benchmark of image classification using several large plankton datasets: Convolutional Neural Networks improve detection of rare taxa Thelma Panaiotis , Guillaume Boniface-Chang , Gabriel Dulac-Arnold , Benjamin Blanc , Tristan Biard ASLO 2021 Aquatic Sciences Meeting, Jun 2021, Online, Unknown Region Conference papers hal-04026436v1
	A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5 R. Kiko , M. Picheral , David Antoine , Marcel Babin , Léo Berline Aquatic Sciences Meeting, 2021, Online, Unknown Region Conference papers hal-04024038v1
	Morphological traits of zooplankton reveal ecological patterns along ice melt dynamics in the Arctic Laure Vilgrain , Jean-Olivier Irisson , Sakina-Dorothée Ayata , Marc Picheral , Marcel Babin Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region Conference papers hal-04026431v1
	UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms Marc Picheral , Emna Abidi , François Berry , Jerome Coindat , Denis Brousseau Ocean Sciences Meeting, 2020, San Diego, United States Conference papers hal-04026430v1
	Coordinating Efforts to Define Marine Plankton Imagery Data and Metadata Best Practices and Standards Patricia Martin-Cabrera , Fabien Lombard , Jean-Olivier Irisson , Lars Stemmann , Klas Möller Biodiversity Information Science and Standards, 2020, Online, Unknown Region. pp.e58932, ⟨10.3897/biss.4.58932⟩ Conference papers hal-04026442v1
	Morphological diversity increases with oligotrophy along a zooplankton time series Jean-Olivier Irisson , Caroline Cailleton , Corinne Desnos , Laëtitia Jalabert , Amanda Elineau Ocean Sciences Meeting, 2020, San Diego, California, USA, Unknown Region Conference papers hal-04026432v1
	Towards a global in situ monitoring of plankton using imaging systems: lessons learnt from the past 10 years of observation in Europe Lars Stemmann , Jean-Baptiste Romagnan , Alain Lefebvre , Gérald Grégori , Jean-Olivier Irisson 2019 IMBeR Open Science Conference, Jun 2019, Brest, France Conference papers hal-04026399v1
	Porites astreoides throughout the Caribbean: the success of one or several species? C. Fauvelot , F. Riquet , C. Daguin-Thiébaut , F. Nuñes , A. Japaud International Marine Connectivity (iMarCo) Conference, 2019, Aveiro, Portugal Conference papers hal-04023520v1
	Using species functional traits to explore the potential impacts of climate change(s) on plankton functional diversity Fabio Benedetti , Sakina-Dorothée Ayata , François Guilhaumon , Jean-Olivier Irisson , Fanny Adloff IMBeR, 2019, Brest, France Conference papers hal-04026434v1
	Larval fish behavior nuances Hjort's aberrant drift hypothesis Robin Faillettaz , Claire B. Paris , Elysanne Durand , Agathe Blandin , Philippe Koubbi Larval Fish Conference, 2019, Plama de Mallorca, Spain Conference papers hal-04026419v1
	EcoTaxa: A human-computer interface to classify images along a taxonomy with the help of machine-learning Jean-Olivier Irisson , Simon-Martin Schröder , Marc Picheral Workshop on Machine Learning in Marine Sciences, 2018, Copenhagen, Denmark Conference papers hal-04026424v1
	Morphological diversity increases with oligotrophy along a zooplankton time series C. Cailleton , Corinne Desnos , Laëtitia Jalabert , Amanda Elineau , Lars Stemmann SFEcologie 2018, 2018, Rennes, Unknown Region Conference papers hal-04026401v1
	Imperfect automatic image classification successfully describes plankton distribution patterns Robin Faillettaz , Marc Picheral , Jessica Y. Luo , Cédric M. Guigand , Robert K. Cowen Workshop on Machine Learning in Marine Sciences, 2018, Copenhagen, Denmark Conference papers hal-04026425v1
	Larval fish swimming behavior alters dispersal patterns from marine protected areas in the North-Western Mediterranean Sea Robin Faillettaz , Claire B. Paris , Jean-Olivier Irisson Larval Fish Conference, 2018, Victoria, British Columbia, Canada Conference papers hal-04026420v1
	Environmental effects on larval fish ontogenetic vertical migration Claire B. Paris , Robin Faillettaz , Jean-Olivier Irisson Larval Fish Conference, 2018, Victoria, British Columbia, Canada Conference papers hal-04026421v1
	Quantitative image processing with machine learning: How to turn images into data Jean-Olivier Irisson , Simon-Martin Schröder , Marc Picheral Aquatic research models to study regeneration and aging, 2018, Nice, France Conference papers hal-04026422v1
	Monitoring plankton in the open ocean with quantitative imaging Jean-Olivier Irisson Intergovernmental Conference on Marine Biodiversity of Areas Beyond National Jurisdiction, 2018, United Nations, New-York, USA, Unknown Region Conference papers hal-04026423v1
	Spatio-temporal variations of the planktonic communities in a North Atlantic Marine Protected Area and their potential links with Sardina pilchardus (Walbaum, 1792) catches Fabio Benedetti , Laëtitia Jalabert , Marc Sourisseau , Beatriz Beker , Amanda Elineau COAST, 2017, Bordeaux, Unknown Region Conference papers hal-04026402v1
	Lagrangian Observations and Modeling of Marine Larvae Claire B. Paris , Jean-Olivier Irisson EGU General Assembly, 2017, Vienna, Austria Conference papers hal-04026435v1
	Projected shifts in copepod surface communities in the Mediterranean Sea under several climate change scenarios Fabio Benedetti , François Guilhaumon , Fanny Adloff , Jean-Olivier Irisson , Sakina-Dorothée Ayata Ocean Sciences Meeting, 2016, New Orleans, United States Conference papers hal-04026400v1
	Swimming speeds of Mediterranean settlement-stage fish larvae nuance Hjort's aberrant drift hypothesis Robin Faillettaz , Elysanne Durand , Claire B. Paris , Philippe Koubbi , Jean-Olivier Irisson SFEcologie 2016, 2016, Marseille, Unknown Region Conference papers hal-04026406v1
	Multidimensional Ecosystem Services Index (MESI) Charles Figuières , Jean-Olivier Irisson , Gabriel Reygondeau , Maria Noël Pi Alperin , Mariam Sy MISTRALS Workshop, 2015, Marseille, France Conference papers hal-04026428v1
	Les larves de poissons Méditerranéens, championnes de la course d’orientation Robin Faillettaz , Jean-Olivier Irisson , Philippe Koubbi , Claire B. Paris , Elysanne Durand DRIVER-SUBLIMO, 2015, Les Embiez, France Conference papers hal-04026429v1
	Behaviour versus oceanic currents during the dispersal of larval fish in the Northwestern Mediterranean sea Robin Faillettaz , Agathe Blandin , Elysanne Durand , Claire B. Paris , Jean-Olivier Irisson Aquatic Sciences Meeting, 2015, Granada, Unknown Region Conference papers hal-04026407v1
	Multidimensional Ecosystem Services Index (MESI) Jean-Olivier Irisson , Mariam Sy , Charles Figuières FAERE Workshop, 2015, Villefranche sur mer, France Conference papers hal-04026427v1
	Fine-scale distribution of zooplankton over a mesoscale front explored through high frequency imaging Jean-Olivier Irisson , Robin Faillettaz , Jessica Y. Luo , Cédric M. Guigand , Robert K. Cowen Aquatic Sciences Meeting, 2015, Granada, Unknown Region Conference papers hal-04026408v1
	Ecological geography of the Mediterranean Sea Gabriel Reygondeau , Jean-Olivier Irisson , Camille Albouy , Sakina-Dorothée Ayata , Fabio Benedetti IMBER, 2014, Bergen, Norway Conference papers hal-04026417v1
	Mediterranean biodiversity (from phytoplankton to top predators) and present threats Gabriel Reygondeau , Camille Albouy , Tarek Hattab , Fabio Benedetti , Jean-Olivier Irisson ICES, 2014, A Coruña, Spain Conference papers hal-04026418v1
	Present status of Mediterranean marine biodiversity and potential anthropogenic threat Gabriel Reygondeau , Camille Albouy , Tarek Hattab , Fabio Benedetti , Jean-Olivier Irisson IARU Sustainability Science Congress, 2014, Copenhagen, Denmark Conference papers hal-04026409v1
	Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front Jessica Y. Luo , Benjamin Grassian , Dorothy Tang , Jean-Olivier Irisson , Adam T. Greer ICES, 2014, A Coruña, Spain Conference papers hal-04026416v1
	Impact of climate change on planktonic ecoregions of the mediterranean sea Sakina-Dorothée Ayata , Gabriel Reygondeau , Fabio Benedetti , Jean-Olivier Irisson , Cécile Guieu ACCOBAMS Workshop on Climate Change, 2014, Monaco, France Conference papers hal-04026414v1
	Fine-scale distribution of larval fish and zooplankton over a mesoscale front explored through high frequency imaging Robin Faillettaz , Jessica Y. Luo , Cédric M. Guigand , Robert K. Cowen , Jean-Olivier Irisson Ocean Sciences Meeting, 2014, Honolulu, HI, USA, Unknown Region Conference papers hal-04026415v1
	autoplot: ready made plots with ggplot2 Jean-Olivier Irisson Rencontres R, 2013, Lyon, France Conference papers hal-04026411v1
	MERMAIDs: First observations of teleseismic P-waves with freely floating submarine robots Alexey Sukhovich , Jean-Olivier Irisson , S. Bonnieux , F. J. Simons , A. Ogé IAHS-IAPSO-IASPEI Joint Assembly, 2013, Gothenburg, Sweden Conference papers hal-04026413v1
	Toward a dynamic biogeochemical division of the Mediterranean Sea in a context of global climate change Gabriel Reygondeau , Jean-Olivier Irisson , Cécile Guieu , S. Gasparini , Sakina-Dorothée Ayata EGU General Assembly, 2013, Vienna, Austria Conference papers hal-04026412v1
	Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in the East Antarctica. Carolina Giraldo , P. Mayzaud , E. Tavernier , Jean-Olivier Irisson , F. Penot 36th Larval Fish Conference, 2012, Bergen, Norway Conference papers hal-04026403v1
	Detecting hydrologic seasons in a long term monitoring time series Jean-Olivier Irisson , A. Webb , O. Passafiume , L. Mousseau Time-series analysis in marine science and applications for industry, 2012, Brest, France Conference papers hal-04026410v1
	Calcifying pteropod time series provides a baseline against which to measure local environmental change E. Howes , C. Assailly , Jean-Olivier Irisson , L. Stemmann Time-series analysis in marine science and applications for industry, 2012, Brest, Unknown Region Conference papers hal-04026404v1
	Lipid condition of Pleuragramma antarcticum larvae C. Giraldo , P. Mayzaud , E. Tavernier , Jean-Olivier Irisson , J. Becciu 5th Rencontres de l'Ichtyologie de France, 2012, Paris, France Conference papers hal-04026405v1
	A probabilistic approach to the discrimination of underwater acoustic signals generated by teleseismic P-waves Alexey Sukhovich , Jean-Olivier Irisson , A. Ogé , F. J. Simons , A. Deschamps EGU General Assembly, 2011, Vienna, Austria Conference papers hal-03996395v1
	Ontogenetic vertical "migration" in coral-reef fish larvae communities and its consequences for dispersal Jean-Olivier Irisson , Claire B. Paris , Robert K. Cowen , Serge Planes ASLO Aquatic Sciences Meeting, 2009, Nice, France Conference papers hal-03996396v1
	Orientation With No Frame of Reference (OWNFOR): A novel system to observe and quantify orientation in reef fish larvae Claire B. Paris , Cédric M. Guigand , Jean-Olivier Irisson , Rebecca Fisher , Evan d'Alessandro Caribbean Connectivity: Implications for Marine Protected Area Management. Proceedings of a Special Symposium, 9-11 November 2006, 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize City, Belize, 2008, Silver Spring, MD, Unknown Region. pp.52--62 Conference papers hal-03996410v1
	The importance of behavior on self-recruitment : a modelling approach J.-O. Irisson , C. Paris , L. Cherubin , Michel de Lara , S. Planes 11th International Coral Reef Symposium, Jul 2008, Fort Lauderdale, United States Conference papers halsde-00332226v1
	The importance of behavior for self-recruitment: a modelling approach Jean-Olivier Irisson , Claire B. Paris , Michel de Lara , Serge Planes International Coral Reef Symposium, 2008, Fort Lauderdale, FL, USA, Unknown Region Conference papers hal-03996409v1
	Lagrangian or not lagrangian? Jean-Olivier Irisson , Michel de Lara , Serge Planes 3rd Lagrangian Analysis and Prediction of Coastal and Ocean Dynamics Meeting, Jun 2005, Lerici, Italy Conference papers hal-03955325v1

	Using new observations and Machine Learning to improve organic sinking processes in the PlankTOM global ocean biogeochemical model Anna Denvil-Sommer , C. Le Quéré , E. T. Buitenhuis , Lionel Guidi , Jean-Olivier Irisson EGU General Assembly, 2021, Online, Unknown Region. 2021 Conference poster hal-04018680v1
	Spatio-temporal patterns of larval fish settlement in the Northwestern Mediterranean Sea Robin Faillettaz , Raphaël Voué , Romain Crec'Hriou , Laure-Hélène Garsi , Gilles Lecaillon Larval Fish Conference, 2019, Palma de Mallorca, Spain. 2019 Conference poster hal-04018675v1
	Quantitative imaging for global observations of planktonic ecosystems Fabien Lombard , Jean-Olivier Irisson , Marc Picheral Ocean Obs'19, 2019, Honolulu, HI, USA, Unknown Region. 2019 Conference poster hal-04018678v1
	Sun-compass orientation in Mediterranean fish larvae Claire B. Paris , Robin Faillettaz , Agathe Blandin , Philippe Koubbi , Jean-Olivier Irisson Larval Fish Conference, 2019, Palma de Mallorca, Spain. 2019 Conference poster hal-04018676v1
	Globally consistent quantitative observations of planktonic ecosystems Fabien Lombard , Emmanuel Boss , J.-O. Irisson Ocean Obs'19, 2019, Honolulu, HI, USA, Unknown Region. 2019 Conference poster hal-04018679v1
	Small-scale horizontal distribution patterns of nematodes in deep NW Mediterranean surface sediments (DYFAMED-BENTHOS 2003) Laurence Guidi-Guilvard , Serge Dallot , Jean-Olivier Irisson 17th International Meiofauna Conference, 2019, Évora, Portugal. 2019 Conference poster hal-04018669v1
	Visualisation dynamique des données d'observation Jean-Olivier Irisson EVOLECO, 2017, Bordeaux, France. 2017 Conference poster hal-04018677v1
	Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front Jessica Y. Luo , Benjamin Grassian , Dorothy Tang , Jean-Olivier Irisson , Adam T. Greer Ocean Sciences Meeting, 2014, Honolulu, HI, USA, Unknown Region. 2014 Conference poster hal-04018674v1
	Distribution and biogeography of the copepods in the mediterranean sea Fabio Benedetti , Gabriel Reygondeau , Jean-Olivier Irisson , Stéphane Gasparini , Philippe Koubbi CIESM, 2013, Marseille, France. 2013 Conference poster hal-04018670v1
	Drivers of temporal variability of larval fish abundance in villefranche bay (Northwestern Mediterranean Sea) over a 7-year time series (2006-2012) Robin Faillettaz , Jean-Olivier Irisson Laval Fish Conference, 2013, Miami, FL, USA, Unknown Region. 2013 Conference poster hal-04018673v1
	Ecoregionalisation of the Mediterranean Sea Gabriel Reygondeau , Jean-Olivier Irisson , Camille Albouy , Sakina-Dorothée Ayata , Fabio Benedetti CIESM, 2013, Marseille, France. 2013 Conference poster hal-04018672v1
	Influence of biophysical processes on coral reef fish population connectivity inferred by modeling Claire B. Paris , A. Srinivasan , Laurent M. Chérubin , Jean-Olivier Irisson , Serge Planes Workshop on advancements in modeling physical-biological interactions in fish early-life history (WKAMF), 2006, Nantes, France. Workshop on advancements in modeling physical-biological interactions in fish early-life history (WKAMF), 2006 Conference poster hal-03955324v1
	Orientation With No Frame of Reference (OWNFOR): An in situ system to detect and measure orientation in pelagic reef fish larvae Jean-Olivier Irisson , Claire B. Paris , Cédric M. Guigand , Rebecca Fisher Ocean Sciences Meeting, 2006, Honolulu, HI, USA, Unknown Region. 2006 Conference poster hal-04018671v1

	Low-shot learning of plankton categories Simon-Martin Schröder , Rainer Kiko , Jean-Olivier Irisson , Reinhard Koch 11269, 2019, 978-3-030-12939-2. ⟨10.1007/978-3-030-12939-2_27⟩ Proceedings hal-03390570v1
	Book of abstracts of the ARTIFACTZ Workshop Artificial intelligence for characterizing plankton traits from images Frédéric Maps , Jean-Olivier Irisson , Sakina-Dorothée Ayata 2019 Proceedings hal-02862387v1

	Chapter 7 Biogeographic patterns of fish Guy Duhamel , Percy-Alexander Hulley , Romain Causse , Philippe Koubbi , Marino Vacchi De Broyer; C. and Koubbi; Philippe and Griffiths; H. J. and Raymond; Ben and Udekem d'Acoz; C. and et al. Biogeographic Atlas of the Southern Ocean, Scientific Committee on Antarctic Research, pp.328--362, 2014 Book sections hal-04018637v1
	Chapter 2.3 Distribution modelling S. Mormède , Jean-Olivier Irisson , Ben Raymond De Broyer; C. and Koubbi; Philippe and Griffiths; H. J. and Raymond; Ben and Udekem d'Acoz; C. and et al. Biogeographic Atlas of the Southern Ocean, Scientific Committee on Antarctic Research, pp.27--29, 2014 Book sections hal-04018639v1
	Chapter 6.9 Southern Ocean Euphausiids J. Cuzin-Roudy , Jean-Olivier Irisson , F. Penot , S. Kawaguchi , C. Vallet De Broyer; C. and Koubbi; Philippe and Griffiths; H. J. and Raymond; Ben and Udekem d'Acoz; C. and et al. Biogeographic Atlas of the Southern Ocean, Scientific Committee on Antarctic Research, pp.309--320, 2014 Book sections hal-04018638v1
	Biological processes: Behaviour and settlement Jean-Olivier Irisson , Jeffrey M. Leis , Claire B. Paris , Howard Browman North, Elizabeth and Gallego, Alejandro and Petitgas, Pierre. Manual of recommended practices for modelling physical-biological interactions during fish early life, 295, ICES Cooperative Research Report, pp.42--59, 2009 Book sections hal-04018641v1
	Application 2: Connectivity Claire B. Paris , Jean-Olivier Irisson , Geneviève Lacroix , Øyvind Fiksen , Jeffrey M. Leis North, Elizabeth and Gallego, Alejandro and Petitgas, Pierre. Manual of recommended practices for modelling physical-biological interactions during fish early life, 295, ICES Cooperative Research Report, pp.63--76, 2009 Book sections hal-04018640v1

	Behavioural approach to larval dispersal in marine systems Jean-Olivier Irisson Sciences du Vivant [q-bio]. Ecole pratique des hautes études - EPHE PARIS, 2008. Français. ⟨NNT : ⟩ Theses tel-00344625v1

	Towards a computational ecology of plankton Jean-Olivier Irisson Biodiversity and Ecology. Sorbonne Université, 2020 Habilitation à diriger des recherches tel-04018620v1

Jean-Olivier IRISSON

Publications

Harmful Ostreopsis cf. ovata blooms could extend in time span with climate change in the Western Mediterranean Sea

First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices

Machine learning in marine ecology: an overview of techniques and applications

Mistaking plastic for zooplankton: Risk assessment of plastic ingestion in the Mediterranean sea

Machine Learning for the Study of Plankton and Marine Snow from Images

Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning

Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions

Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

Content-Aware Segmentation of Objects Spanning a Large Size Range: Application to Plankton Images

Temporal fluctuations in zooplankton size, abundance, and taxonomic composition since 1995 in the North Western Mediterranean Sea

A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5

Evidence for a consistent use of external cues by marine fish larvae for orientation

Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms

Correcting estimations of copepod volume from 2-dimensional images

Machine learning techniques to characterize functional traits of plankton from image data

Macroscale patterns of oceanic zooplankton composition and size structure

Marine snow morphology illuminates the evolution of phytoplankton blooms and determines their subsequent vertical export

Impact of dust addition on Mediterranean plankton communities under present and future conditions of pH and temperature: an experimental overview

Trait‐based approach using in situ copepod images reveals contrasting ecological patterns across an Arctic ice melt zone

Sinking Organic Particles in the Ocean—Flux Estimates From in situ Optical Devices

Spatio-temporal patterns of larval fish settlement in the northwestern Mediterranean Sea

The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area

Orientation of Mediterranean fish larvae varies with location

Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea

Globally Consistent Quantitative Observations of Planktonic Ecosystems

Ocean Solutions to Address Climate Change and Its Effects on Marine Ecosystems

Swimming speeds of Mediterranean settlement-stage fish larvae nuance Hjort's aberrant drift hypothesis

Automated plankton image analysis using convolutional neural networks

Regionalisation of the Mediterranean basin, a MERMEX synthesis

Larval Fish Swimming Behavior Alters Dispersal Patterns From Marine Protected Areas in the North-Western Mediterranean Sea

Biogeochemical regions of the Mediterranean Sea: an objective multidimensional and multivariate environmental approach

Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research

Diagnostic delay of pyogenic vertebral osteomyelitis and its associated factors

The relationship between heterotrophic feeding and inorganic nutrient availability in the scleractinian coral T-reniformis under a short-term temperature increase

Imperfect automatic image classification successfully describes plankton distribution patterns

A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience

Pteropod time series from the North Western Mediterranean (1967-2003): impacts of pH and climate variability

With a Little Help from My Friends: Group Orientation by Larvae of a Coral Reef Fish

Sun-Compass Orientation in Mediterranean Fish Larvae

Seismic monitoring in the oceans by autonomous floats

Orientation of fish larvae in situ is consistent among locations, years and methods, but varies with time of day

Automatic recognition of T and teleseismic P waves by statistical analysis of their spectra: An application to continuous records of moored hydrophones

Environmental drivers of the fine-scale distribution of a gelatinous zooplankton community across a mesoscale front

Lipid components as a measure of nutritional condition in fish larvae (Pleuragramma antarcticum) in East Antarctica

Effect of gaseous cement industry effluents on four species of microalgae

Reef Odor: A Wake Up Call for Navigation in Reef Fish Larvae

Identifying coral reef fish larvae through DNA barcoding : a test case with the families Acanthuridae and Holocentridae

Biophysical modelling to investigate the effects of climate change on marine population dispersal and connectivity

In situ observation of settlement behaviour in larvae of coral reef fishes at night

In situ imaging highlight the important role of giant mesopelagic protists in the biogeochemical cycles of carbon and silicon

Use of CMIP6 biogeochemical simulations to assess the effect of climate forcing on plankton size structure

Travaux récents sur le zooplancton Arctique

Morphological diversity increases with decreasing resources along a zooplankton time series

Easily Interpretable, Non-parametric Sample Transformation for Classification

EcoTaxa: a tool to support the taxonomic classification of large datasets through supervised machine learning

Machine learning for plankton and particles images: from pictures to data

A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits

Morphological diversity increases with oligotrophy along a zooplankton time-series

Observing plankton in the open ocean with quantitative imaging

Fat chance : estimating the lipid content of Arctic zooplankton from in situ images

Astaxanthin as an indicator of copepod fitness - From indiviudal pigmentation to ecosystem functioning

Could color be an indicator of copepod fitness? A focus on carotenoid pigmentation

Working towards integration of new data describing biological essential ocean variables from marine coastal ecosystems

Exploring and exploiting new tools for functional trait extraction from in situ plankton images

Correction of the estimation of the volume of copepods from 2-dimensional in situ images

Benchmark of image classification using several large plankton datasets: Convolutional Neural Networks improve detection of rare taxa

A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5

Morphological traits of zooplankton reveal ecological patterns along ice melt dynamics in the Arctic

UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms

Coordinating Efforts to Define Marine Plankton Imagery Data and Metadata Best Practices and Standards

Morphological diversity increases with oligotrophy along a zooplankton time series

Towards a global in situ monitoring of plankton using imaging systems: lessons learnt from the past 10 years of observation in Europe

Porites astreoides throughout the Caribbean: the success of one or several species?

Using species functional traits to explore the potential impacts of climate change(s) on plankton functional diversity

Larval fish behavior nuances Hjort's aberrant drift hypothesis

EcoTaxa: A human-computer interface to classify images along a taxonomy with the help of machine-learning

Morphological diversity increases with oligotrophy along a zooplankton time series