Jordi Estellé

155

Documents

Researcher identifiers

jordiestelle
ResearcherId : A-7976-2008
0000-0002-6241-1732
Google Scholar : https://scholar.google.com/citations?user=ccS1QKgAAAAJ&hl=en&oi=ao
IdRef : 192193023
ResearcherId : http://www.researcherid.com/rid/A-7976-2008

Presentation

Publications

	Gastrointestinal Microbial Ecology of Weaned Piglets Fed Diets with Different Levels of Glyphosate Sundas Rani , Martin Tang Sørensen , Jordi Estellé , Samantha Joan Noel , Natalja Nørskov Microbiology Spectrum, 2023, 11 (4), pp.e0207475. ⟨10.1128/spectrum.00615-23⟩ Journal articles hal-04483840v1
	Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs Cristina Sebastià , Josep Folch , Maria Ballester , Jordi Estellé , Magí Passols mSystems, 2023, 9 (1), ⟨10.1128/msystems.01049-23⟩ Journal articles hal-04483848v1
	Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination Marion Borey , Bertrand Bed’hom , Nicolas Bruneau , Jordi Estellé , Frederik Larsen Scientific Reports, 2022, 12 (1), pp.9995. ⟨10.1038/s41598-022-13512-7⟩ Journal articles hal-03787568v1
	Comparative analysis of the caecal tonsil transcriptome in two chicken lines experimentally infected with Salmonella Enteritidis Anaïs Cazals , Andrea Rau , Jordi Estellé , Nicolas Bruneau , Jean-Luc Coville PLoS ONE, 2022, 17 (8), 19 p. ⟨10.1371/journal.pone.0270012⟩ Journal articles hal-03771102v1
	Differences in caecal microbiota composition and Salmonella carriage between experimentally infected inbred lines of chickens Anaïs Cazals , Jordi Estellé , Nicolas Bruneau , Jean-Luc Coville , Pierrette Menanteau Genetics Selection Evolution, 2022, 54 (1), pp.7. ⟨10.1186/s12711-022-00699-6⟩ Journal articles hal-03551157v1
	Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs Adrián López-García , Rita Benítez , Yolanda Núñez , Emilio Gómez-Izquierdo , Eduardo de Mercado PLoS ONE, 2021, 16 (5), pp.e0251804. ⟨10.1371/journal.pone.0251804⟩ Journal articles hal-03518956v1
	Analysis of viromes and microbiomes from pig fecal sample reveals that phages and prophages rarely carry antibiotic resistance genes Maud Billaud , Quentin Lamy-Besnier , Julien Lossouarn , Elisabeth Moncaut , Moira Dion The International Society of Microbiologial Ecology Journal, 2021, 1 (55), ⟨10.1038/s43705-021-00054-8⟩ Journal articles hal-03299373v1
	Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs Fany Blanc , Tatiana Maroilley , Manuel Revilla , Gaëtan Lemonnier , Jean-Jacques Leplat Genetics Selection Evolution, 2021, 53 (1), pp.24. ⟨10.1186/s12711-021-00614-5⟩ Journal articles hal-03175942v1
	Links between fecal microbiota and the response to vaccination against influenza A virus in pigs Marion Borey , Fany Blanc , Gaëtan Lemonnier , Jean-Jacques Leplat , Deborah Jardet NPJ vaccines, 2021, 6 (1), pp.1-15. ⟨10.1038/s41541-021-00351-2⟩ Journal articles hal-03518946v1
	Special issue on livestock metagenomics Jordi Estellé , Miguel Perez-Encisco Journal of Animal Breeding and Genetics, 2020, 137 (1), pp.3-3. ⟨10.1111/jbg.12460⟩ Journal articles hal-02620468v1
	Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs Francesca Romana Massacci , Alessandra Morelli , Lucilla Cucco , Adrien Castinel , Roberta Ortenzi Animals, 2020, 10 (4), pp.676. ⟨10.3390/ani10040676⟩ Journal articles hal-02964221v1
	Transcription from a gene desert in a melanoma porcine model S. Marthey , J. Estellé , A. Blin , P. Wahlberg , F. Créchet Molecular Genetics and Genomics, 2020, 295 (5), pp.1239-1252. ⟨10.1007/s00438-020-01694-6⟩ Journal articles hal-03285890v1
	Growth Performance and Adaptability of European Sea Bass (Dicentrarchus labrax) Gut Microbiota to Alternative Diets Free of Fish Products David Pérez-Pascual , Jordi Estellé , Gilbert Dutto , Charles Rodde , Jean-François Bernardet Microorganisms, 2020, 8 (9), pp.1346. ⟨10.3390/microorganisms8091346⟩ Journal articles hal-02964210v1
	Discovery of Predictors of Mycoplasma hyopneumoniae Vaccine Response Efficiency in Pigs: 16S rRNA Gene Fecal Microbiota Analysis Peris Munyaka , Fany Blanc , Jordi Estellé , Gaëtan Lemonnier , Jean-Jacques Leplat Microorganisms, 2020, 8 (8), pp.1151. ⟨10.3390/microorganisms8081151⟩ Journal articles hal-02964218v1
	Broilers divergently selected for digestibility differ for their digestive microbial ecosystems Marion Borey , Jordi Estellé , Aziza Caidi , Nicolas Bruneau , Jean-Luc Coville PLoS ONE, 2020, 15 (5), pp.e0232418. ⟨10.1371/journal.pone.0232418⟩ Journal articles hal-02964226v1
	Integrative analysis of blood and gut microbiota data suggests a non-alcoholic fatty liver disease (NAFLD)-related disorder in French SLAdd minipigs Marco Moroldo , Peris Mumbi Munyaka , Jerome Lecardonnel , Gaetan Lemonnier , Eric Venturi Scientific Reports, 2020, 10 (1), 13 p. ⟨10.1038/s41598-019-57127-x⟩ Journal articles hal-02627128v1
	Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows Yuliaxis Ramayo‐caldas , Laura Zingaretti , Milka Popova , Jordi Estellé , Aurelien Bernard Journal of Animal Breeding and Genetics, 2020, 137 (1), pp.49-59. ⟨10.1111/jbg.12427⟩ Journal articles hal-02495627v1
	Applicability of an unmedicated feeding program aimed to reduce the use of antimicrobials in nursery piglets: impact on performance and fecal microbiota Paola Lopez-Colom , Jordi Estellé , Jordi Bonet , Jaume Coma , Susana Martín-Orúe Animals, 2020, 10 (2), ⟨10.3390/ani10020242⟩ Journal articles hal-02625962v1
	A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment Junhua Li , Huanzi Zhong , Yuliaxis Y. Ramayo-Caldas , Nicolas Terrapon , Vincent Lombard GigaScience, 2020, 9 (6), pp.1-15. ⟨10.1093/gigascience/giaa057⟩ Journal articles hal-02860679v1
	Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets Francesca Romana Massacci , El Mostafa Berri , Gaetan Lemonnier , Elodie Guettier , Fany Blanc Animal Microbiome, 2020, 2 (1), 12 p. ⟨10.1186/s42523-020-0020-4⟩ Journal articles hal-02620309v1
	Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip M. Munoz , R. Bozzi , J. García-Casco , Y. Núñez , A. Ribani Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-49830-6⟩ Journal articles hal-02623491v1
	Association between the pig genome and its gut microbiota composition Daniel Crespo-Piazuelo , Lourdes Migura-Garcia , Jordi Estellé , Lourdes Criado-Mesas , Manuel Revilla Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-45066-6⟩ Journal articles hal-02627862v1
	Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection Francesca Massacci , Silvia Tofani , Claudio Forte , Micol Bertocchi , Carmela Lovito Journal of Animal Breeding and Genetics, 2019, ⟨10.1111/jbg.12432⟩ Journal articles hal-02618422v1
	Benefits from the joint analysis of host genomes and metagenomes: Select the holobiont Jordi Estellé Journal of Animal Breeding and Genetics, 2019, 136 (2), pp.75-76. ⟨10.1111/jbg.12383⟩ Journal articles hal-02624531v1
	Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier , Fany Blanc Animal, 2019, First view (11), pp.1-11. ⟨10.1017/S1751731119000843⟩ Journal articles hal-02192515v1
	Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae Peris M. Munyaka , Arun Kommadath , Janelle Fouhse , Jamie Wilkinson , Natalie Diether Vaccine, 2019, 37 (13), pp.1743-1755. ⟨10.1016/j.vaccine.2019.02.016⟩ Journal articles hal-02624846v1
	Rôle de l'environnement précoce dans la variabilité des phénotypes et l’adaptation des animaux d’élevage à leur milieu Frederique Pitel , Fanny Calenge , Nadège Aigueperse , Jordi Estellé , Vincent Coustham INRA Productions Animales, 2019, 32 (2), pp.247-262. ⟨10.20870/productions-animales.2019.32.2.2467⟩ Journal articles hal-02385561v1
	Influence of the intestinal microbiota on colonization resistance to Salmonella and the shedding pattern of naturally exposed pigs Héctor Argüello , Jordi Estellé , Finola C. Léonard , Fiona Crispie , Paul D. Cotter mSystems, 2019, 4 (2), ⟨10.1128/mSystems.00021-19⟩ Journal articles hal-02625688v1
	Diversity across major and candidate genes in European local pig breeds Riccardo Bozzi , Fabián García , Yolanda Nunez , Claudia Geraci , Alessandro Crovetti PLoS ONE, 2018, 13 (11), ⟨10.1371/journal.pone.0207475⟩ Journal articles hal-02626931v1
	Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions Daniel Crespo-Piazuelo , Jordi Estellé , Manuel Revilla , Lourdes Criado-Mesas , Yuliaxis Ramayo Caldas Scientific Reports, 2018, 8, ⟨10.1038/s41598-018-30932-6⟩ Journal articles hal-02628673v1
	Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa Héctor Argüello , Jordi Estellé , Sara Zaldívar-López , Ana Carvajal , Mª Asunción López-Bascón Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-26083-3⟩ Journal articles hal-02621111v1
	New susceptibility loci for cutaneous melanoma risk and progression revealed using a porcine model Emmanuelle E. Bourneuf , Jordi Estellé , Amandine Blin , Francoise Créchet , Maria-Del-Pilar M.-D.-P. Schneider Oncotarget, 2018, 9 (45), pp.27682-27697. ⟨10.18632/oncotarget.25455⟩ Journal articles hal-02628158v1
	Immunome differences between porcine ileal and jejunal Peyer’s patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues T. Maroilley , M. Berri , G. Lemonnier , D. Esquerré , C. Chevaleyre Scientific Reports, 2018, 8 (1), pp.1-12. ⟨10.1038/s41598-018-27019-7⟩ Journal articles hal-02356215v1
	Inferring the evolution of the major histocompatibility complex of wild pigs and peccaries using hybridisation DNA capture-based sequencing Carol Lee , Marco Moroldo , Alvaro Perdomo-Sabogal , Núria Mach , Sylvain Marthey Immunogenetics, 2018, 70 (6), pp.401-417. ⟨10.1007/s00251-017-1048-9⟩ Journal articles hal-02629389v1
	Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis Tatiana Maroilley , Gaetan Lemonnier , Jerôme Lecardonnel , Diane Esquerré , Yuliaxis Ramayo Caldas BMC Genomics, 2017, 18 (1), ⟨10.1186/s12864-017-4354-6⟩ Journal articles hal-02624041v1
	Transcriptome of melanoma cells from two mouse models, Tyr:NRas Q61K and Tyr:Rack1-HA, Tyr:NRas Q61K Cécil Campagne , Stéphanie Pons , Diane Esquerre , Jordi Estellé , Emmanuelle Bourneuf Data in Brief, 2017, 14, pp.32-34. ⟨10.1016/j.dib.2017.07.006⟩ Journal articles hal-01608664v1
	Integration of liver gene coexpression networks and eGWAs analyses highlighted candidate regulators implicated in lipid metabolism in pigs Maria Ballester , Yuliaxis Ramayo Caldas , Manuel Revilla , Jordi Corominas , Anna Castello Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep46539⟩ Journal articles hal-01607964v1
	A reference gene catalogue of the pig gut microbiome Liang Xiao , Jordi Estellé , Pia Kiilerich , Yuliaxis Ramayo Caldas , Zhongkui Xia Nature Microbiology, 2016, 1, pp.1-6. ⟨10.1038/nmicrobiol.2016.161⟩ Journal articles hal-01607746v1
	Epigenetic regulation of the ELOVL6 gene is associated with a major QTL effect on fatty acid composition in pigs Jordi Corominas , Jorge Ap Marchesi , Anna Puig-Oliveras , Manuel Revilla , Jordi Estellé Genetics Selection Evolution, 2015, 47 (1), pp.20. ⟨10.1186/s12711-015-0111-y⟩ Journal articles hal-01293529v1
	Early-life establishment of the swine gut microbiome and impact on host phenotypes Núria Mach , Mustapha Berri , Jordi Estellé , Florence Levenez , Gaetan Lemonnier Environmental Microbiology Reports, 2015, 7 (3), pp.554-569. ⟨10.1111/1758-2229.12285⟩ Journal articles hal-01168456v1
	Chronic [i]Trichuris muris[/i] infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli Jacob Bak Holm , Daniel Sorobetea , Pia Kiilerich , Yuliaxis Ramayo Caldas , Jordi Estellé PLoS ONE, 2015, 10 (5), pp.1-22. ⟨10.1371/journal.pone.0125495⟩ Journal articles hal-01194169v1
	Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-Ionomycin Vincent Jacquier , Jordi Estellé , Barbara Schmaltz , Jerôme Lecardonnel , Marco Moroldo BMC Genomics, 2015, 16 (1), pp.1-18. ⟨10.1186/s12864-015-1218-9⟩ Journal articles hal-01194059v1
	Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings Pierre-François Roux , Sylvain Marthey , Anis Djari , Marco Moroldo , Diane Esquerre Animal Genetics, 2015, 46 (1), pp.82-86. ⟨10.1111/age.12248⟩ Journal articles hal-01194013v1
	A co-association network analysis of the genetic determination of pig conformation, growth and fatness Anna Puig-Oliveras , Maria Ballester , Jordi Corominas , Manuel Revilla , Jordi Estellé PLoS ONE, 2014, 9 (12), e114862 (20 p.). ⟨10.1371/journal.pone.0114862⟩ Journal articles hal-01194008v1
	Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition Anna Puig-Oliveras , Yuliaxis Ramayo Caldas , Jordi Corominas , Jordi Estellé , Dafne Pérez-Montarelo PLoS ONE, 2014, 9 (6), ⟨10.1371/journal.pone.0099720⟩ Journal articles hal-01194006v1
	Extensive expression differences along porcine small intestine evidenced by transcriptome sequencing Núria Mach , El Mostafa Berri , Diane Esquerre , Claire Chevaleyre , Gaëtan Lemonnier PLoS ONE, 2014, 9 (2), 12 p. ⟨10.1371/journal.pone.0088515⟩ Journal articles hal-01193806v1
	KIT and melanoma predisposition in pigs: sequence variants and association analysis A Fernández-Rodríguez , Jordi Estellé , Amandine Blin , M Muñoz , Francoise Créchet Animal Genetics, 2014, 45 (3), pp.445-448. ⟨10.1111/age.12136⟩ Journal articles hal-01193820v1
	Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition Jordi Corominas , Yuliaxis Ramayo-Caldas , Anna Puig-Oliveras , Jordi Estellé , Anna Castello BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-843⟩ Journal articles hal-01193819v1
	The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers Núria Mach , Yu Gao , Gaetan Lemonnier , Jerôme Lecardonnel , Isabelle P. Oswald BMC Genomics, 2013, 14, pp.1-17. ⟨10.1186/1471-2164-14-894⟩ Journal articles hal-01019583v1
	A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis Marie-Agnès Dillies , Andrea Rau , Julie Aubert , Christelle Hennequet-Antier , Marine Jeanmougin Briefings in Bioinformatics, 2012, 14 (6), pp.671-683. ⟨10.1093/bib/bbs046⟩ Journal articles hal-00782486v1
	Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition Yuliaxis Y. Ramayo-Caldas , Núria Mach , Anna A. Esteve-Codina , Jordi J. Corominas , Anna A. Castelló BMC Genomics, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-547⟩ Journal articles hal-01000049v1
	Tuning of natural killer cell reactivity by NKp46 and Helios calibrates T cell responses. Emilie Narni-Mancinelli , Baptiste N. Jaeger , Claire Bernat , Aurore Fenis , Sam Kung Science, 2012, 335 (6066), pp.344-8. ⟨10.1126/science.1215621⟩ Journal articles hal-00685893v1
	Fast computation and applications of genome mappability. Thomas Derrien , Jordi Estellé , Santiago Marco Sola , David G. Knowles , Emanuele Raineri PLoS ONE, 2012, 7 (1), pp.e30377. ⟨10.1371/journal.pone.0030377⟩ Journal articles inserm-00664289v1
	Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data: The Swine Leukocyte Antigen Complex (SLA) as a Model Region Marie-Laure Endale Ahanda , Eric R. Fritz , Jordi Estellé , Zhi-Liang Hu , Ole Madsen PLoS ONE, 2012, 7, online (11), Non paginé. ⟨10.1371/journal.pone.0048607⟩ Journal articles hal-01019035v1
	Genetic and functional evaluation of MITF as a candidate gene for cutaneous melanoma predisposition in pigs Emmanuelle Bourneuf , Zhi-Qiang Du , Jordi Estellé , Hélène Gilbert , Francoise Créchet Mammalian Genome, 2011, 22 (9-10), pp.602-612. ⟨10.1007/s00335-011-9334-6⟩ Journal articles hal-01019749v1
	Association with litter size of new polymorphisms on ESR1 and ESR2 genes in a Chinese-European pig line Gloria Muñoz , Cristina Ovilo , Jordi Estellé , Luis Silió , Almudena Fernández Genetics Selection Evolution, 2007, 39 (2), pp.195-206 Journal articles hal-00894587v1

	Immune traits are affected by genetic selection for faecal enterotypes in pigs Fany Blanc , Catherine Larzul , Gaetan Lemonnier , Nicolas Bruneau , Charline Niort 8th European Veterinary Immunology Workshop, Sep 2024, Dublin, Ireland Conference papers hal-04709443v1
	Genetic Selection Orientates Gut Microbiota in Pigs. Catherine Larzul , Jordi Estellé , Marion Borey , Fany Blanc , Gaëtan Lemonnier Plant and Animal Genome 30, Jan 2023, San Diego, United States Conference papers hal-04033053v1
	Host genetics affect the composition of the lower gut microbiota in dairy cows L Brulin , S. Ducrocq , J. Estellé , G. Even , S. Martel Book of Abstracts of the 74. Annual Meeting of the European Federation of Animal Science, EAAP, Aug 2023, Lyon, France. pp.518 Conference papers hal-04330888v1
	Links between gut microbiome functions and feed efficiency in two divergently selected pig lines Anaïs Cazals , Olivier Zemb , Amir Aliakbari , Hélène Gilbert , Jordi Estellé 73rd Annual Meeting of the European Federation of Animal Science (EAAP), Sep 2022, Porto, Portugal Conference papers hal-03967150v1
	Prediction of immune response to vaccine against the influenza A virus or Mycoplasma hyopneumoniae in pigs based on data from fecal microbiota and blood collected before vaccination Fany Blanc , Jordi Estellé , Claire Rogel-Gaillard ALACI 2022 - 13th Latin American and Caribbean Congress of Immunology, Jun 2022, Varadero, Cuba Conference papers hal-03786484v1
	Novel blood biomarkers to predict better responses to vaccination in chicken Marie-Hélène Pinard-van Der Laan , Jordi Estellé , Alexandre Lecoeur , Bertrand Bed’hom , Olivier Bouchez 26th World Poultry Congress, French Branch of the World’s Poultry Science Association, Aug 2022, Paris, France Conference papers hal-04260945v1
	Interplay between host genetics and the dynamics of the gut microbiota in pigs Claire Rogel-Gaillard , Jordi Estellé , Marion Borey , Catherine Larzul 72nd Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland Conference papers hal-03786280v1
	Response to selection on fecal microbiota composition in Large White piglets Catherine Larzul , Marion Borey , Yvon Billon , Marie-Noelle Rossignol , Gaëtan Lemonnier ISAG, Jul 2021, virtual, France Conference papers hal-03464516v1
	Searching for links between gut microbiota collected before vaccination and variabilities of vaccine response in pigs Marion Borey , Fany Blanc , Gaëtan Lemonnier , Jean-Jacques Leplat , Nicolas Bruneau Plant and Animal Genome XXVIII Conference, Jan 2020, San Diego, United States Conference papers hal-03785754v1
	Directional selection of Large White pigs for gut microbiota enterotypes Claire Rogel Gaillard , Jordi Estellé , Yvon Billon , Jean Jacques J. J. Leplat , Gaetan Lemonnier 71. Annual Meeting of the European Federation of Animal Science (EAAP), EAAP, Dec 2020, Virtual meeting, Portugal Conference papers hal-03148273v1
	INRA in TREASURE project. Activities and results Bénédicte Lebret , Florence Garcia-Launay , Ludovic Brossard , Justine Faure , Bertrand Servin TREASURE congerence, Feb 2019, Ljubljana, Slovenia Conference papers hal-02790935v1
	How to predict that some animals respond better to vaccination than others: application to vaccination against Mycoplasma hyopneumoniae in pigs? Fany Blanc , Jordi Estellé , Gaëan Lemonnier , Jean-Jacques Leplat , Yvon Billon Animal Genetics and Diseases 2019 conference, BBSRC Pirbright Institute. GBR., May 2019, Hinxton, Cambridge, United Kingdom Conference papers hal-02735430v1
	Integrative genomics analysis of blood and microbiota data suggests a NAFLD-related disorder in SLAdd minipigs Marco Moroldo , Peris Munyaka , Jerôme Lecardonnel , Gaetan Lemonnier , Eric Venturi 37. International Society for Animal Genetics Conference (ISAG 2019), Jul 2019, Lleida, Spain Conference papers hal-02733937v1
	Piglets infected with ETEC F4 and F18: effect of MUC4 and FUT1 genotypes Francesca Massacchi , Silvia Tofani , Michele Tentellini , Serenella Orsini , Carmela Lovito 70. Annual meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2019, Gand, Belgium Conference papers hal-02736163v1
	Impact of genetics on microbiota composition and on Salmonella carriage in chicken Anaïs Cazals , Jordi Estellé , Nicolas Bruneau , Jean-Luc Coville , Pierrette Menanteau European Symposium on Poultry Genetics, Oct 2019, Pragues, Czech Republic Conference papers hal-04146202v1
	Systems immunology approaches to decipher individual variability of immune capacity: application to the pig species Claire Rogel Gaillard , Tatiana Maroilley , Fany Blanc , Jordi Estellé 17. International Congress of Immunology (IUIS 2019), Oct 2019, Pékin, China Conference papers hal-02733935v1
	Individual genetic variability of vaccine responses in pigs Fany Blanc , Tatiana Maroilley , Gaetan Lemonnier , Jean Jacques Leplat , Edwige Bouguyon 11. Symposium du Réseau Français d'Immunologie des Animaux Domestiques, Mar 2018, Tours, France Conference papers hal-02790791v1
	Impact of weaning age on the gut microbiota composition in piglets Francesca Massacci , El Mostafa Berri , Gaetan Lemonnier , Deborah Jardet , Fany Blanc 69. Annual Meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2018, Dubrovnik, Croatia. 704 p Conference papers hal-02734751v1
	What potential of genome-wide integrative approaches to predict vaccine responses? Fany Blanc , Tatiana Maroilley , Marie-Hélène Pinard-van Der Laan , Gaetan Lemonnier , Jean Jacques Leplat 69. Annual Meeting of the European Association of Animal Production (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2018, Dubrovnik, Croatia. 704 p Conference papers hal-02733938v1
	On the influence of host genetics on gut microbiota composition in pigs Jordi Estellé , Núria Mach , Yuliaxis Ramayo Caldas , Florence Levenez , Gaetan Lemonnier 69. Annual Meeting of the European Association of Animal Production (EAAP), Aug 2018, Dubrovnik, Croatia. 704 p Conference papers hal-02733939v1
	Genetic variability of vaccine responses in pigs: application to vaccines against Mycoplasma hyopneumoniae and Influenza A virus Fany Blanc , Tatiana Maroilley , Gaetan Lemonnier , Jean Jacques Leplat , Edwige Bouguyon 6. European Veterinary and Immunology Workshop (EVIW), British Society for Immunology. Londres, GBR., Sep 2018, Utrecht, Netherlands Conference papers hal-02734174v1
	Integrating blood transcriptome and immunity traits to identify markers of immune capacity in pigs Tatiana Maroilley , Fany Blanc , Gaetan Lemonnier , Jerôme Lecardonnel , Jean Pierre Bidanel 69. Annual Meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2018, Dubrovnik, Croatia Conference papers hal-02733943v1
	Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approach Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura Zingaretti , Milka Popova , Núria Mach Gut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom Conference papers hal-02738326v1
	Construction et validation d’un premier catalogue de gènes du microbiome intestinal chez le porc Jordi Estellé , Yuliaxis Ramayo Caldas , Nicolas Pons , Emmanuelle Le Chatelier , Edi Prifti 50. Journées de la Recherche Porcine en France, 2018, NA, France Conference papers hal-02285612v1
	Impact de stratégies alimentaires médicamenteuses et d’une substance aromatique sur les performances, la santé et la diversité bactérienne fécale chez le porcelet Tristan Brehelin , Sébastien Comyn , Lilian Leloutre , Jordi Estellé , Claire Rogel Gaillard 50. Journées de la Recherche Porcine, Institut du Porc (IFIP). FRA., Jan 2018, Paris, France Conference papers hal-02288156v1
	Multivariate and network analysis identified microbial biomarkers linked to methane emission Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura M. Zingaretti , Milka Popova , Núria Mach 69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia Conference papers hal-02881487v1
	Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approach Rafael Munoz Tamayo , Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France Conference papers hal-01840967v1
	Genetic individual variability of vaccine responses in pigs Fany Blanc , Gaetan Lemonnier , Jean Jacques Leplat , Edwige Bouguyon , Yvon Billon 36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland Conference papers hal-01608684v1
	Role of the metacommunity in the colonization of rabbit's intestinal tract to fight against antibiotic-resistant bacteria Caroline Achard , Beatrice Gabinaud , Sylvie Combes , Véronique Dupouy-Guiraute , Yuliaxis Ramayo Caldas 16. International Symposium on Microbial Ecology - ISME16, Aug 2016, Montréal, Canada Conference papers hal-02799866v1
	Allele specific expression analysis of the porcine blood transcriptome reveals extensive cis-regulation in immunity-related genes Tatiana Maroilley , Gaetan Lemonnier , Jordi Estellé , Diane Esquerre , Marie‐josé Mercat 35. Conference of the International Society for Animal Genetics (ISAG), Jul 2016, Salt Lake City, United States Conference papers hal-01532670v1
	First microbial gene catalog and antibiotic resistome of rabbit gut microbiota established by metagenomic sequencing Caroline Achard , Yuliaxis Ramayo Caldas , Amine Ghozlane , Mathieu M. Almeida , Maria Ballester Davis Ballester Symposium INRA ROWETT sur le microbiome du tube digestif. Microflore intestinale : amie ou ennemie ?, Jun 2016, clermont-ferrand, France Conference papers hal-02797803v1
	Evolution of the Major Histocompatibility Complex class I in wild pigs and peccaries Carol Lee , Marco Moroldo , Alvaro Perdomo , Núria Mach , Sylvain Marthey Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jul 2016, Queensland, Australia Conference papers hal-01531670v1
	First rabbit gut microbial gene catalog and metagenomic insights into the resistome : links with antibiotic use Caroline Achard , Yuliaxis Ramayo Caldas , Amine Ghozlane , Mathieu M. Almeida , Samuel Boucher 16. International Symposium on Microbial Ecology - ISME16, Aug 2016, Montréal, Canada Conference papers hal-02792973v1
	The Pig’s other genome: a reference gene catalogue of the gut microbiome as a new resource for deep studies of the interplay between the host and its microbiome Liang Xiao , Jordi Estellé , Pia Kiilerich , Yuliaxis Ramayo-Caldas , Zhongkui Xia 35. International Society for Animal Genetics Conference (2016), Jul 2016, Salt Lake City, United States. ⟨10.2527/jas2016.94supplement422x⟩ Conference papers hal-02741979v1
	The porcine gut microbiota: composition and links with host’s genetics and phenotypes Jordi Estellé , Claire Rogel Gaillard 67. Annual meeting of the European Federation of Animal Science (EAAP 2016), Aug 2016, Belfast, Ireland. 718 p Conference papers hal-02739772v1
	Microbiote intestinal chez le porc : paramètres génétiques de sa composition et liens avec des caractères immunitaires Jordi Estellé , Catherine Larzul , Núria Mach , Florence Levenez , Yuliaxis Ramayo-Caldas 48. Journées de la Recherche Porcine, Feb 2016, Paris, France Conference papers hal-02288150v1
	Microbiote intestinal chez le porc : paramètres génétiques de sa composition et liens avec des caractères immunitaires Jordi Estellé , Catherine Larzul , Núria Mach , Florence F. Levenez , Yuliaxis Ramayo Caldas 48. Journées de la Recherche Porcine, Institut du Porc (IFIP). FRA., Feb 2016, Paris, France Conference papers hal-02742708v1
	Impact of antibiotherapy and rapidly fermentable fiber in the diet of young rabbit assessed by transcriptomic approaches: preliminary results Vincent Jacquier , Sylvie Combes , Jordi Estellé , Isabelle P. Oswald , Thierry Gidenne 11. World Rabbit Congress, Jun 2016, Qingdao, China. 417 p Conference papers hal-02739375v1
	Gut microbiota in swine: composition, genetic parameters, and links with immunity and production traits Jordi Estellé , Núria Mach , Catherine Larzul , El Mostafa Berri , Yuliaxis Ramayo Caldas Plant and Animal Genome XXIII Conference, Jan 2015, San Diego, United States Conference papers hal-01194002v1
	Resistome of pig and rabbit gut microbiota using high-troughput sequencing and qPCR approaches Caroline Achard , Véronique Dupouy-Guiraute , Yuliaxis Ramayo Caldas , Beatrice Gabinaud , Catherine Denis 6. Symposium on Antimicrobial Résistance in Animals and the Environment (ARAE), Jun 2015, Tours, France. 109p Conference papers hal-01536555v1
	Pig’s gut microbiota: composition, and links with host genetic parameters, immunity and production traits Jordi Estellé , Núria Mach , Yuliaxis Ramayo Caldas , Marie-Hélène Pinard-van Der Laan , . Inra-Denmark-Bgi Consortium What have DNA sequencing technologies ever done for the animal sciences, International Livestock Research Institute (ILRI)., Oct 2015, Roslin, United Kingdom Conference papers hal-02739718v1
	Genomics of microbiota and gut health Fanny Calenge , Irène Gabriel , Sandrine Mignon-Grasteau , Jordi Estellé , Bertrand B. Bed'Hom 9. European Symposium on Poultry Genetics, World's Poultry Science Association (WPSA). INT., Jun 2015, Tuusula, Finland Conference papers hal-02740658v1
	Modulation de la composition l'écosystème digestif caecal du lapereau par voie alimentaire et relation avec son fonctionnement Vincent Jacquier , Sylvie Combes , Géraldine Pascal , Laurent L. Cauquil , Beatrice Gabinaud 16. Journées de la Recherche Cunicole, Nov 2015, Le Mans, France. 264 p Conference papers hal-02742208v1
	Etat des lieux de l'antibiorésistance en élevage cunicole français et application du concept d'exclusion compétitive pour limiter la transmission d'un microbiote maternal antibiorésistant Caroline Achard , Véronique Dupouy-Guiraute , Susanna Siviglia , Nathalie Arpaillange , Beatrice Gabinaud 16. Journées de la Recherche Cunicole, Nov 2015, Le Mans, France. 264 p Conference papers hal-02744277v1
	Implication de DICER dans l'ulcération du mélanome chez le porc Francoise Créchet , Clément de Obaldia , Amandine Blin , Diane Esquerre , Silvia Vincent-Naulleau Séminaire du Département de Génétique Animale, Apr 2014, Fréjus, France. pp.1 Conference papers hal-01607087v1
	Laser capture microdissection of skin melanocytes for the transcriptome characterization of a melanoma predisposition swine model Jordi Estellé , Emmanuelle Bourneuf , Guillaume Piton , Jean Jacques Leplat , Stephan Bouet International Symposium of Microgenomics, May 2014, Paris, France Conference papers hal-01194005v1
	Les microbes hébergés par les animaux : quels liens avec des objectifs de robustesse en élevage ? Claire Gaillard , Jordi Estellé Colloque AGENAE, May 2014, Nantes, France. 7 p Conference papers hal-01193957v1
	Establishment of the swine gut microbiome during early life and further impact on adult health and performance Núria Mach , El Mostafa Berri , Jordi Estellé , Florence Levenez , Gaetan Lemonnier 34. International Society for Animal Genetics Conference, Jul 2014, Xi'an, China Conference papers hal-01193885v1
	Using NGS data to characterize genetics of meet-type and egg-type chicken lines Pierre-François Roux , Frédéric Lecerf , Anis Djari , Diane Esquerre , Sylvain Marthey 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296 Conference papers hal-01019218v1
	The peripheral blood transcriptome reflects variations in immunity traits in swine: towards identification of biomarkers Núria Mach , Gaetan Lemonnier , Jerôme Lecardonnel , Jordi Estellé , Claire Gaillard 10. International Veterinary Immunology Symposium, Aug 2013, Milano, Italy Conference papers hal-01193882v1
	Paramètres génétiques de la réponse immunitaire et covariation des caractères de croissance et de carcasse chez le porc Jean Pierre Bidanel , Dorothée Desson , Yvon Billon , Isabelle P. Oswald , Jordi Estellé 45. Journées Recherche Porcine, Feb 2013, Paris, France. 6 p Conference papers hal-01190240v1
	Validation of a new rabbit microarray: transcriptome variation in PBMCs after in vitro stimulation Vincent Jacquier , Jordi Estellé , Barbara B. Panneau , Jerôme J. Lecardonnel , Marco M. Moroldo 64. Annual Meeting of the European Federation of Animal Science (EAAP), European Association for Animal Production (EAAP). ITA., Aug 2013, Nantes, France. 660 p Conference papers hal-02747487v1
	Extensive comparison of genome wide transcription along pig small intestine and in Peyer’s patces by RNA-seq Núria Mach , El Mostafa Berri , Diane Esquerre , Gaetan Lemonnier , Yvon Billon 10. International Veterinary Immunology Symposium (IVIS), Aug 2013, Milano, Italy Conference papers hal-01193881v1
	Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte Pierre-François Roux Roux , Frédéric Lecerf , Anis Djari , Diane D. Esquerre , Sylvain S. Marthey 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561 Conference papers hal-01000659v1
	Genetics and genomics of immune traits in swine Claire Gaillard , Yu Gao , Núria Mach , Jordi Estellé 4. European Veterinary Immunology Workshop (EVIW), Sep 2012, Edimbourg, United Kingdom. 1 p Conference papers hal-01193962v1
	Genome-wide association study for immunity traits in French Large White pigs Jordi Estellé , Laurence Flori , Yu Gao , Marie-Pierre Sanchez , Jean Pierre Bidanel 33rd Conference of the International Society of Animal Genetics (ISAG), Jul 2012, Cairns, Australia Conference papers hal-01189794v1
	Whole genome re-sequencing of the MeLiM porcine model for cutaneous melanoma Jordi Estellé , Diane Esquerre , Olivier Bouchez , Silvia Vincent-Naulleau , Per Wahlberg 33rd Conference of the International Society of Animal Genetics (ISAG), Jul 2012, Cairns, Australia Conference papers hal-01019843v1
	Blood transcriptome as an emerging molecular phenotype to study immunocompetence in swine. Núria Mach , Yu Gao , Gaetan Lemonnier , Jerôme Lecardonnel , Jordi Estellé COST Action FA0902 Understanding and combating PRRS in Europe, Feb 2012, Lodi, Italy. 1 p Conference papers hal-01193961v1
	Genome-wide association and transcriptome studies for immunity traits in French Large White pigs Claire Gaillard , Núria Mach , Jordi Estellé 33. Conference of the International Society for Animal Genetics (ISAG), Jul 2012, Cairns, Australia Conference papers hal-01193964v1
	Fine mapping of production and meat quality QTL in Large White pigs using the PorcineSNP60 Beadchip Marie-Pierre Sanchez , Thierry Tribout , Nathalie N. Iannuccelli , Marcel M. Bouffaud , Bertrand Servin EAAP, Aug 2012, Bratislava, Slovakia Conference papers hal-02745652v1
	Cartographie fine de régions QTL à l’aide de la puce PorcineSNP60 pour la qualité de la viande en race Large White Marie-Pierre Sanchez , Thierry Tribout , Nathalie Iannuccelli , Marcel Bouffaud , Bertrand Servin Journées des Sciences du muscle et technologie de la viansde, Nov 2012, Caen, France Conference papers hal-01190243v1
	Efficiency of heterologous capture for targeted resequencing of the Major Histocompatibility Complex in Suidae and Tayassuidae Jaime Gongora , Núria Mach , Jordi Estellé , Per Wahlberg , Sylvain Marthey 20. Plant and Animal Genome, Labo/service de l'auteur, Ville service, Pays service., Jan 2012, San Diego, CA, United States. pp.P0623 Conference papers hal-01019000v1
	Detection of CNVs throughout the genome of a porcine melanoma model. Jordi J. Corominas , Jordi Estellé , Yuliaxis Y. Ramayo-Caldas , Mark M. Lathrop , Florence F. Demenais IPCC 2011 - XXIst International Pigment Cell Conference, Sep 2011, Bordeaux, France. pp.Poster Conference papers hal-00999821v1
	Biologie intégrative de la prédisposition au mélanome cutané chez le porc MeLiM Jordi Estellé , Florence Demenais , Claire Gaillard , Silvia Vincent-Naulleau , Emmanuelle Bourneuf Ecole chercheurs "Génomique et Diversité des Caractères à déterminisme complexe, May 2011, La Colle sur Loup, France Conference papers hal-01193751v1
	Blood transcriptome as an emerging molecular phenotype to refine immune traits in pig Núria Mach , Yu Gao , Gaetan Lemonnier , Jerôme Lecardonnel , Jordi Estellé 4. International Symposium on Animal Functional Genomics, Oct 2011, Dublin, Ireland Conference papers hal-01193877v1
	In silico prediction of microRNAs targeting alleles of the Swine Leukocyte Antigen complex Marie-Laure M.-L. Endale Ahanda , Zhi-Liang Hu , Jordi Estellé , Eric R. Fritz , Claire Rogel Gaillard ISAFG 2011, Oct 2011, Dublin, Ireland Conference papers hal-02803523v1
	Sus-Flora project: a genetic and genomic study of gut microbiota and immune system homeostasis in swine Claire Gaillard , Jordi Estellé , Bertrand Bed'Hom , Jean Pierre Bidanel , Silvia Vincent-Naulleau 1. International Symposium Pasteur Institute, Institut Pasteur [Paris]. Paris, FRA., Nov 2011, Paris, France Conference papers hal-01193995v1
	microRNA target prediction and 3'UTR polymorphism in swine Marie-Laure M.-L. Endale Ahanda , Zhi-Liang Z.-L. Hu , Jordi Estellé , Eric R. E. R. Fritz , Claire Gaillard RNAi World Congress, Apr 2011, Boston, United States Conference papers hal-01000372v1
	High-throughput mRNA profiling of microdissected melanocytes and melanoma cells for the characterization of melanoma predisposition in a swine model Jordi Estellé , Guillaume Piton , Claudia Bevilacqua , Stephan Bouet , Emmanuelle Bourneuf 7th EADO Congress, Jun 2011, Nantes, France Conference papers hal-01019847v1
	c-kit and Melanoma Predisposition in Pigs : Sequence Variants, Association Analysis and Gene Expression Jordi Estellé , Hélène de Batz , Francoise Créchet , Guillaume Piton , Luca Fontanesi 32nd Conference for the International Society for Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. pp.Poster Conference papers hal-01193626v1
	A Genome-Wide Association Study for Melanoma Predisposition in the MeLiM Biomedical Swine Model by using the PorcineSNP60 Beadchip Jordi Estellé , Florence Demenais , Diana Zelenika , Mark Lathrop , Claire Gaillard 32nd Conference for the International Society for Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. pp.Poster 402 Conference papers hal-01193625v1
	High-density SNP genotyping of the SSC13 QTL region for melanoma predisposition in the MeLiM biomedical swine model Jordi Estellé , Z.Q. Du , Francoise Créchet , Guillaume Piton , Denis Milan Pig Genome III Conference, A celebration for completing the pig genome sequence, 2009, Hinxton, United States Conference papers hal-01193444v1
	The melanoblastoma-bearing Libechov minipig model: a tool for melanoma genetics Emmanuelle Bourneuf , Jordi Estellé , Francoise Créchet , Hélène Gilbert , Guillaume Piton 7. World Congress on Melanoma, May 2009, Vienne, Austria Conference papers hal-01193448v1
	Single-cell laser capture microdissection (LCM) for the transcriptome comparison of melanocytes and melanoma cells in the MeLiM biomedical swine model. Jordi Estellé , Emmanuelle Bourneuf , Guillaume Piton , Jean Jacques Leplat , Stephan Bouet Pig Genome III Conference, A celebration for completing the pig genome sequence, 2009, Hinxton, United Kingdom Conference papers hal-01193436v1

	Caractérisation clinique, histologique et transcriptomique d’une réponse immunitaire antitumorale efficiente chez le porc Giorgia Egidy , Héloïse Débare , Fany Blanc , Claudia Bevilacqua , Julie Rivière Journée, Sep 2022, Bordeaux, France. sciencesconf.org:inrae-jsga2022:417970 Conference poster hal-04217828v1
	Genetic variability of vaccine responses in pigs: application to vaccines against Mycoplasma hyopneumoniae and Influenza A virus Fany Blanc , Tatiana Maroilley , Gaetan Lemonnier , Jean Jacques Leplat , Edwige Bouguyon 27. International Plant and Animal Genome Conference (PAG 2019), Jan 2019, San Diego, United States. , 2019 Conference poster hal-02738393v1
	Projet européen multi-acteurs TREASURE : diversité des races locales de porcs et des systèmes de production pour des produits traditionnels de qualité élevée et des filières porcines durables Bénédicte Lebret , Ludovic Brossard , Florence Garcia-Launay , Justine Faure , Bertrand Servin Défis scientifiques Phase, Nov 2019, Rennes, France. 2019, Recueil des résumés Conference poster hal-02738056v1
	Searching for markers of immunocompetence in blood: application to vaccination against Influenza A virus in pigs Fany Blanc , Jordi Estellé , Gaëtan Lemonnier , Jean Jacques Leplat , Edwige Bouguyon International Veterinary Immunology Symposium (IVIS), Aug 2019, Seattle, United States. , 2019 Conference poster hal-02285632v1
	How to predict that some animals respond better to vaccination than others: application to vaccination against Eimeria maxima in chickens Fany Blanc , Bertrand Bed’hom , Jordi Estellé , Olivier Bouchez , Marie-Noelle Rossignol 11. European Symposium on Poultry Genetics, Oct 2019, Prague, Czech Republic Conference poster hal-02924087v1
	Approches intégratives pour prédire la réponse vaccinale Claire Rogel Gaillard , Marie-Hélène Pinard-van Der Laan , Fany Blanc , Jordi Estellé , Bertrand Bed'Hom Journées Département INRA de Génétique Animale, Oct 2018, Dienné, France. 2018 Conference poster hal-02733942v1
	Immunophénotypage à grande échelle pour des approches de génétique Claire Rogel Gaillard , Fany Blanc , Fanny Calenge , Jordi Estellé , Marie-Hélène Pinard-van Der Laan Journées Scientifiques du Département de Génétique Animale, Oct 2018, Dienné, France. 2018 Conference poster hal-02733940v1
	Gut microbiota analyses for sustainable European local porcine breeds: a TREASURE pilot study Jordi Estellé , R. Savić , Danijel Karolyi , K. Salaipal , Marie-José Mercat 69. Annual Meeting of the European Association of Animal Production (EAAP), Aug 2018, Dubrovnik, Croatia. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 24, 2018, Annual Meeting of the European Association for Animal Production Conference poster hal-02478450v1
	Immunome differences between porcine ileal and jejunal Peyer’s patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues Tatiana Maroilley , Mustapha Berri , Gaetan Lemonnier , D. Esquerré , Claire Chevaleyre 11. Symposium of the French Domestic Animal Immunology Network (IAD 2018), Mar 2018, Tours, France. , 56 p., 2018 Conference poster hal-02737197v1
	Identification of genomic regions associated with caecal microbiota composition in a broiler line Fanny Calenge , Jordi Estellé , Bertrand Bed'Hom , Ceren Simsek , Christelle Hennequet-Antier 10th European Symposium on Poultry Genetics, Jun 2017, Saint-Malo, France. 2017, Proceedings of the 10th European Symposium on Poultry Genetics Conference poster hal-01607406v1
	Etude de la capacité immunitaire chez le porc Large White : recherche de marqueurs génétiques liés à l'expression des gènes dans le sang Tatiana Maroilley , Maria Ballester Devis , Gaetan Lemonnier , Marie‐josé Mercat , Yvon Billon 48. Journées de la Recherche Porcine, Feb 2016, Paris, France. IFIP - Institut du Porc, Journées de la Recherche Porcine en France, 2016, Journées de la Recherche Porcine en France Conference poster hal-01533880v1
	Impact of a genetic selection led on digestive efficiency on gut microbiota composition in broiler chicken Fanny Calenge , Jordi Estellé , Christelle Hennequet-Antier , Aziza Caidi , Pascale Quéré 10. INRA-Rowett Symposium on Gut Microbiology. Twenty years and counting, Jun 2016, Clermont-Ferrand, France. , 2016 Conference poster hal-01608757v1
	Characterization and diversity analysis of European local pig breeds and production systems under Treasure project framework A.I. Fernández , L. Fontanesi , R. Bozzi , Jordi Estellé , C. Ovilo 35. Conference of the International Society for Animal Genetics (ISAG), Jul 2016, Salt Lake City, Utah, United States. ASAS - American Society of Animal Science, Journal of Animal Science, 94 (suppl. 4), 2016, 35th International Society for Animal Genetics Conference. ⟨10.2134/jas2016.94supplement494a⟩ Conference poster hal-02743126v1
	Gut microbiota composition in swine: genetic parameters and links with immunity traits Jordi Estellé , Núria Mach , Yuliaxis Ramayo Caldas , Florence Levenez , Gaetan Lemonnier 34. International Society for Animal Genetics Conference (ISAG), Jul 2014, Xi'an, China. , 2014 Conference poster hal-01193953v1
	Exhaustive comparison of gene expression along pig small Intestine and in Peyer’s patches performed by RNA-Seq Núria Mach , El Mostafa Berri , Diane Esquerre , Claire Chevaleyre , Gaetan Lemonnier Plant and Animal Genome XXII, Jan 2014, San Diego, United States. 2014 Conference poster hal-01193883v1
	The influence of host’s genetics on the gut microbiota composition in pigs and its links with immunity traits Jordi Estellé , Núria Mach , Yuliaxis Ramayo Caldas , Florence Levenez , Gaetan Lemonnier 10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada. 2014, Proceedings, 10th World Congress of Genetics Applied to Livestock Production Conference poster hal-01193952v1
	Gut microbiota and immunity interplay at the mucosal interface in swine, a data integration approach Núria Mach , Patricia Lepage , Florence Levenez , Gaetan Lemonnier , Catherine Denis Statistical Methods for (Post)-Genomics Data workshop, Jan 2013, Amsterdam, Netherlands. 2013, Workshop Programme & Abstracts Conference poster hal-01193880v1
	The peripheral blood transcriptome dynamically reflects immunocompetence in swine Núria Mach , Yu Gao , Gaetan Lemonnier , Jerôme Lecardonnel , Jordi Estellé 33. Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia. 2012, ISAG Abstracts Conference poster hal-01193879v1
	Cartographie fine de régions QTL à l’aide de la puce Porcine SNP60 pour l’ingestion, la croissance, la composition de la carcasse et la qualité de la viande en race Large White Marie-Pierre Sanchez , Thierry Tribout , Nathalie Iannuccelli , Marcel Bouffaud , Bertrand Servin 44. Journées de la Recherche Porcine, Feb 2012, Paris, France. IFIP - Institut du Porc ; INRA, Journées de la Recherche Porcine en France, 44, 2012, Journees de la Recherche Porcine en France Conference poster hal-01190241v1
	Diversity studies of SLA haplotypes by targeted high-throughput resequencing of the whole locus Núria Mach , Marco Moroldo , Sylvain Marthey , Asako Ando , Jun-Heon Lee 33. Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia. 2012, ISAG Abstracts Conference poster hal-01193878v1
	Laser capture microdissection of melanocytes and melanoma cells for the transcriptome characterization of melanoma predisposition in a swine model Jordi Estellé , Emmanuelle Bourneuf , Guillaume Piton , Jean Jacques Leplat , Stephan Bouet Animal Genomics for Animal Health International Symposium (AGAH 2010), May 2010, Paris, France. , 2010 Conference poster hal-01193750v1

	Characterization of bovine vaginal microbiota and its relationship with host fertility, health, and production L Brulin , S Ducrocq , G Even , Mp Sanchez , S Martel 2023 Preprints, Working Papers, ... hal-04521262v1
	Towards the quantitative characterization of piglets' robustness to weaning: A modelling approach Manuel Revilla , Nicolas N.C. Friggens , Laurent Broudiscou , G. Lemonnier , F. Blanc 2018 Preprints, Working Papers, ... hal-02369432v1

	Understanding the development of the gut microbiome in pigs: an overview Marion Borey , Jordi Estellé , Claire Rogel Gaillard Understanding gut microbiomes as targets for improving pig gut health, 103, Burleigh Dodds Science Publishing, pp.179-202, 2022, Burleigh Dodds Series in Agricultural Science, 1786764873, 9781786764874. ⟨10.19103/AS.2021.0089.07⟩ Book sections hal-03536962v1

	Iberian pigs: more than excellent ham! Jordi Estellé 2020, pp.100004. ⟨10.24072/pci.animsci.100004⟩ Other publications hal-02968268v1

Jordi Estellé

Presentation

Publications

Gastrointestinal Microbial Ecology of Weaned Piglets Fed Diets with Different Levels of Glyphosate

Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs

Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination

Comparative analysis of the caecal tonsil transcriptome in two chicken lines experimentally infected with Salmonella Enteritidis

Differences in caecal microbiota composition and Salmonella carriage between experimentally infected inbred lines of chickens

Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs

Analysis of viromes and microbiomes from pig fecal sample reveals that phages and prophages rarely carry antibiotic resistance genes

Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs

Links between fecal microbiota and the response to vaccination against influenza A virus in pigs

Special issue on livestock metagenomics

Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs

Transcription from a gene desert in a melanoma porcine model

Growth Performance and Adaptability of European Sea Bass (Dicentrarchus labrax) Gut Microbiota to Alternative Diets Free of Fish Products

Discovery of Predictors of Mycoplasma hyopneumoniae Vaccine Response Efficiency in Pigs: 16S rRNA Gene Fecal Microbiota Analysis

Broilers divergently selected for digestibility differ for their digestive microbial ecosystems

Integrative analysis of blood and gut microbiota data suggests a non-alcoholic fatty liver disease (NAFLD)-related disorder in French SLAdd minipigs

Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows

Applicability of an unmedicated feeding program aimed to reduce the use of antimicrobials in nursery piglets: impact on performance and fecal microbiota

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets

Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip

Association between the pig genome and its gut microbiota composition

Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection

Benefits from the joint analysis of host genomes and metagenomes: Select the holobiont

Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach

Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae

Rôle de l'environnement précoce dans la variabilité des phénotypes et l’adaptation des animaux d’élevage à leur milieu

Influence of the intestinal microbiota on colonization resistance to Salmonella and the shedding pattern of naturally exposed pigs

Diversity across major and candidate genes in European local pig breeds

Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions

Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa

New susceptibility loci for cutaneous melanoma risk and progression revealed using a porcine model

Immunome differences between porcine ileal and jejunal Peyer’s patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues

Inferring the evolution of the major histocompatibility complex of wild pigs and peccaries using hybridisation DNA capture-based sequencing

Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis

Transcriptome of melanoma cells from two mouse models, Tyr:NRas Q61K and Tyr:Rack1-HA, Tyr:NRas Q61K

Integration of liver gene coexpression networks and eGWAs analyses highlighted candidate regulators implicated in lipid metabolism in pigs

A reference gene catalogue of the pig gut microbiome

Epigenetic regulation of the ELOVL6 gene is associated with a major QTL effect on fatty acid composition in pigs

Early-life establishment of the swine gut microbiome and impact on host phenotypes

Chronic [i]Trichuris muris[/i] infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli

Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-Ionomycin

Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings

A co-association network analysis of the genetic determination of pig conformation, growth and fatness

Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition

Extensive expression differences along porcine small intestine evidenced by transcriptome sequencing

KIT and melanoma predisposition in pigs: sequence variants and association analysis

Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition

The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

Tuning of natural killer cell reactivity by NKp46 and Helios calibrates T cell responses.

Fast computation and applications of genome mappability.

Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data: The Swine Leukocyte Antigen Complex (SLA) as a Model Region

Genetic and functional evaluation of MITF as a candidate gene for cutaneous melanoma predisposition in pigs

Association with litter size of new polymorphisms on ESR1 and ESR2 genes in a Chinese-European pig line

Immune traits are affected by genetic selection for faecal enterotypes in pigs

Genetic Selection Orientates Gut Microbiota in Pigs.

Host genetics affect the composition of the lower gut microbiota in dairy cows

Links between gut microbiome functions and feed efficiency in two divergently selected pig lines

Prediction of immune response to vaccine against the influenza A virus or Mycoplasma hyopneumoniae in pigs based on data from fecal microbiota and blood collected before vaccination

Novel blood biomarkers to predict better responses to vaccination in chicken

Interplay between host genetics and the dynamics of the gut microbiota in pigs

Response to selection on fecal microbiota composition in Large White piglets

Searching for links between gut microbiota collected before vaccination and variabilities of vaccine response in pigs

Directional selection of Large White pigs for gut microbiota enterotypes

INRA in TREASURE project. Activities and results

How to predict that some animals respond better to vaccination than others: application to vaccination against Mycoplasma hyopneumoniae in pigs?

Integrative genomics analysis of blood and microbiota data suggests a NAFLD-related disorder in SLAdd minipigs

Piglets infected with ETEC F4 and F18: effect of MUC4 and FUT1 genotypes

Impact of genetics on microbiota composition and on Salmonella carriage in chicken

Systems immunology approaches to decipher individual variability of immune capacity: application to the pig species

Individual genetic variability of vaccine responses in pigs

Impact of weaning age on the gut microbiota composition in piglets

What potential of genome-wide integrative approaches to predict vaccine responses?

On the influence of host genetics on gut microbiota composition in pigs

Genetic variability of vaccine responses in pigs: application to vaccines against Mycoplasma hyopneumoniae and Influenza A virus