Julie AUBERT

85%
Libre accès
33
Documents
Identifiants chercheurs

Présentation

Publications

4
3
2
2
2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
6
5
5
5
5
4
4
4
3
3
3
3
3
3
3
3
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
3
2
2
2
1
2
1
5
4
3
2
3
1
4
25
1
1
1
1
1
1

Publications

Image document

Medicago truncatula genotype drives the plant nutritional strategy and its associated rhizosphere bacterial communities

Anouk Zancarini , Christine Le Signor , Sébastien Terrat , Julie Aubert , Christophe Salon et al.
New Phytologist, 2024, 245 (2), pp.767-784. ⟨10.1111/nph.20272⟩
Article dans une revue hal-04835437 v1
Image document

Unraveling negative biotic interactions determining soil microbial community assembly and functioning

Sana Romdhane , Aymé Spor , Julie Aubert , David Bru , Marie-Christine Breuil et al.
The International Society of Microbiologial Ecology Journal, 2022, 16 (1), pp.296-306. ⟨10.1038/s41396-021-01076-9⟩
Article dans une revue hal-03604836 v1

Model‐based biclustering for overdispersed count data with application in microbial ecology

Julie Aubert , Sophie Schbath , Stéphane Robin
Methods in Ecology and Evolution, 2021, 12 (6), pp.1050-1061. ⟨10.1111/2041-210X.13582⟩
Article dans une revue hal-03323318 v1
Image document

Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

E. Lejal , J. Chiquet , J. Aubert , S. Robin , A. Estrada-Peña et al.
Microbiome, 2021, 9 (1), pp.153. ⟨10.1186/s40168-021-01051-8⟩
Article dans une revue hal-03287263 v1
Image document

Fine-Tuning of Process Parameters Modulates Specific Metabolic Bacterial Activities and Aroma Compound Production in Semi-Hard Cheese

Wenfan Cao , Julie Aubert , Marie-Bernadette Maillard , Francoise Boissel , Arlette Leduc et al.
Journal of Agricultural and Food Chemistry, 2021, ⟨10.1021/acs.jafc.1c01634⟩
Article dans une revue hal-03313075 v1
Image document

Subclinical endometritis in dairy cattle is associated with distinct mRNA expression patterns in blood and endometrium

Mariam Raliou , Doulaye Dembélé , Anna Düvel , Philippe Bolifraud , J. Aubert et al.
PLoS ONE, 2019, 14 (8), ⟨10.1371/journal.pone.0220244⟩
Article dans une revue hal-02264367 v1
Image document

Variational inference for coupled hidden markov models applied to the joint detection of copy number variations

Xiaoqiang Wang , Emilie Lebarbier , Julie Aubert , Stephane Robin
The international journal of biostatistics, 2019, 15 (1), ⟨10.1515/ijb-2018-0023⟩
Article dans une revue hal-02626026 v1

Transcriptomic response of Debaryomyces hansenii during mixed culture in a liquid model cheese medium with Yarrowia lipolytica

Reine Malek , Pascal Bonnarme , Francoise Irlinger , Pascale Frey-Klett , Djamila Onesime et al.
International Journal of Food Microbiology, 2018, 264, pp.53-62. ⟨10.1016/j.ijfoodmicro.2017.10.026⟩
Article dans une revue hal-01695894 v1
Image document

Translatome analysis at the egg-to-embryo transition in sea urchin

Héloïse Chassé , Julie Aubert , Sandrine Boulben , Gildas Le corguillé , Erwan Corre et al.
Nucleic Acids Research, 2018, 46 (9), pp.4607 - 4621. ⟨10.1093/nar/gky258⟩
Article dans une revue hal-01803500 v1

Can soil microbial diversity influence plant metabolites and life history traits of a rhizophagous insect?

Tom Lachaise , Morgane Ourry , Lionel Lebreton , Anne-Yvonne Guillerm-Erckelboudt , Juliette Linglin et al.
Insect Science, 2017, 24 (6), pp.1045-1056. ⟨10.1111/1744-7917.12478⟩
Article dans une revue hal-01661250 v1
Image document

Overview of a surface-ripened cheese community functioning by meta-omics analyses

Eric Dugat-Bony , Cecile Straub , Aurélie Teissandier , Djamila Onesime , Valentin Loux et al.
PLoS ONE, 2015, 10 (4), pp.e0124360. ⟨10.1371/journal.pone.0124360⟩
Article dans une revue hal-01195505 v1

Elucidating the response of Kluyveromyces lactis to arsenite and peroxide stress and the role of the transcription factor KlYap8

Jenny Veide Vilg , Nallani Vijay Kumar , Ewa Maciaszczyk-Dziubinska , Ewa Sloma , Djamila Onesime et al.
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2014, 1839 (11), pp.1295-1306. ⟨10.1016/j.bbagrm.2014.09.004⟩
Article dans une revue hal-03274354 v1

Elucidating the response of Kluyveromyces lactis to arsenite and peroxide stress and the role of the transcription factor KlYap8

Jenny Veide Vilg , Nallani Vijay Kumar , Ewa Maciaszczyk-Dziubinska , Ewa Sloma , Djamila Onesime et al.
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2014, 1839 (11), pp.1295 - 1306. ⟨10.1016/j.bbagrm.2014.09.004⟩
Article dans une revue hal-01197637 v1

New insights into sulfur metabolism in yeasts as revealed by studies of yarrowia lipolytica

Agnes A. Hebert , Marie-Pierre M.-P. Forquin , Aurelie A. Roux , Julie J. Aubert , Christophe C. Junot et al.
Applied and Environmental Microbiology, 2013, 79 (4), pp.1200 - 1211. ⟨10.1128/AEM.03259-12⟩
Article dans une revue hal-01001589 v1

Correction: A Temporal -omic Study of Propionibacterium freudenreichii CIRM-BIA1 T Adaptation Strategies in Conditions Mimicking Cheese Ripening in the Cold

Marion Dalmasso , Julie Aubert , Valérie Briard-Bion , Victoria Chuat , Stéphanie-Marie Deutsch et al.
Article dans une revue hal-02363413 v1

Accumulation of intracellular glycogen and trehalose by [i]Propionibacterium Freudenreichii[/i] under conditions mimicking cheese ripening in the cold

Marion Dalmasso , Julie Aubert , Sergine Even , Hélène Falentin , Marie-Bernadette Maillard et al.
Applied and Environmental Microbiology, 2012, 78 (17), pp.6357-6364. ⟨10.1128/AEM.00561-12⟩
Article dans une revue hal-01191223 v1
Image document

A Temporal -omic study of propionibacterium freudenreichii CIRM-BIA1T adaptation strategies in conditions mimicking cheese ripening in the cold

Marion Dalmasso , Julie Aubert , Valérie Briard-Bion , Victoria Chuat , Stéphanie-Marie Deutsch et al.
PLoS ONE, 2012, 7 (1), pp.e29083 (1-15). ⟨10.1371/journal.pone.0029083⟩
Article dans une revue hal-01189567 v1

Accumulation of Intracellular Glycogen and Trehalose by Propionibacterium freudenreichii under Conditions Mimicking Cheese Ripening in the Cold

Marion Dalmasso , Julie Aubert , Sergine Even , Hélène Falentin , Marie-Bernadette Maillard et al.
Applied and Environmental Microbiology, 2012, 78 (17), pp.6357-6364. ⟨10.1128/AEM.00561-12⟩
Article dans une revue hal-02363390 v1

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Marie-Agnès Dillies , Andrea Rau , Julie Aubert , Christelle Hennequet-Antier , Marine Jeanmougin et al.
Briefings in Bioinformatics, 2012, 14 (6), pp.671-683. ⟨10.1093/bib/bbs046⟩
Article dans une revue hal-00782486 v1

Global regulation of the response to sulfur availability in the cheese-related bacterium Brevibacterium aurantiacum

Marie-Pierre M.-P. Forquin , Agnes A. Hebert , Aurélie A. Roux , Julie J. Aubert , Caroline C. Proux et al.
Applied and Environmental Microbiology, 2011, 77 (4), pp.1449-1459. ⟨10.1128/AEM.01708-10⟩
Article dans une revue hal-01000027 v1

Exploration of sulfur metabolism in the yeast Kluyveromyces lactis

Agnes A. Hebert , Marie-Pierre Forquin Forquin-Gomez , Aurélie A. Roux , Julie J. Aubert , Christophe C. Junot et al.
Applied Microbiology and Biotechnology, 2011, 91 (5), pp.1409-1423. ⟨10.1007/s00253-011-3481-2⟩
Article dans une revue istex hal-01000029 v1

Specific and extensive endometrial deregulation is present before conception in IVF/ICSI repeated implantation failures (IF) or recurrent miscarriages

Nathalie N. Ledée , Carine C. Munaut , Julie J. Aubert , Valérie V. Sérazin , Mona M. Rahmati et al.
Journal of Pathology, 2011, 225 (4), pp.554-564. ⟨10.1002/path.2948⟩
Article dans une revue hal-01000290 v1
Image document

Invading basement membrane matrix is sufficient for MDA-MB-231 breast cancer cells to develop a atable in vivo metastatic phenotype

M. Abdelkarim , N. Vintonenko , A. Starzec , A. Robles , J. Aubert et al.
PLoS ONE, 2011, 6 (8), pp.e23334. ⟨10.1371/journal.pone.0023334⟩
Article dans une revue hal-00705949 v1
Image document

Terminal differentiation of goat mammary tissue during pregnancy requires the expression of genes involved in immune functions

Felicie Faucon , Emmanuelle Rebours , Claudia Bevilacqua , Jean-Christophe Helbling , Julie Aubert et al.
Physiological Genomics, 2009, 40 (1), pp.61-82
Article dans une revue hal-01193417 v1
Image document

Gene expression profiles of bovine caruncular and intercaruncular endometrium at implantation

Nadera Mansouri-Atiia , Julie Aubert , Pierrette Reinaud , Corinne Giraud-Delville , Geraldine Taghouti et al.
Physiological Genomics, 2009, 39 (1), pp.14-27. ⟨10.1152/physiolgenomics.90404.2008⟩
Article dans une revue hal-01197513 v1
Image document

Endometrium as an early sensor of in vitro embryo manipulation technologies

N. Mansouri-Attia , Olivier Sandra , Julie J. Aubert , Séverine Degrelle , Robin E Everts et al.
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (14), pp.5687-5692. ⟨10.1073/pnas.0812722106⟩
Article dans une revue inserm-02440509 v1
Image document

Normalization for triple-target microarray experiments

Marie-Laure Magniette , Julie Aubert , Avner Bar-Hen , Samira Elftieh , Fréderic Magniette et al.
BMC Bioinformatics, 2008, 9, pp.216. ⟨10.1186/1471-2105-9-216⟩
Article dans une revue hal-01197566 v1
Image document

Statistical methodology for the analysis of dye-switch microarray experiments

Tristan Mary-Huard , Julie Aubert , Nadera Mansouri , Olivier Sandra , Jean-Jacques Daudin
BMC Bioinformatics, 2008, 9 (98), ⟨10.1186/1471-2105-9-98⟩
Article dans une revue hal-01197510 v1

Classification of human chromosome 21 gene-expression variations in down syndrome: Impact on disease phenotypes

E. Aït Yahya-Graison , Julie Aubert , Stephane Robin , L. Dauphinot , I. Rivals et al.
American Journal of Human Genetics, 2007, 81 (3), pp.475-491. ⟨10.1086/520000⟩
Article dans une revue hal-01197498 v1
Image document

Classification of variations of HSA21 gene expression in down syndrome lymphoblastoid cell lines : impact on disease phenotype

E. Aït Yahya-Graison , Julie Aubert , L. Dauphinot , Isabelle Rivals , Marguerite Prieur et al.
American Journal of Human Genetics, 2007, 81 (3), pp.475-491
Article dans une revue hal-01208111 v1
Image document

Profiling at mRNA, protein and metabolite level reveals alterations in renal amino acid handling and glutathione metabolism in kidney tissue of Pept2-I- mice

Isabelle M. Frey , Isabel Rubio-Aliaga , Anne Siewert , Daniela Sailer , Aleksey Drobyshev et al.
Physiological Genomics, 2007, 28 (3), pp.301-310. ⟨10.1152/physiolgenomics.00193.2006⟩
Article dans une revue hal-01197531 v1
Image document

Determination of the regulated genes in microarray experiments using local FDR

Julie Aubert , Avner Bar-Hen , Jean-Jacques Daudin , Stephane Robin
BMC Bioinformatics, 2004, 5 (125), ⟨10.1186/1471-2105-5-125⟩
Article dans une revue hal-01208107 v1
Image document

Analyse statistique de données biologiques à haut débit

Julie Aubert
Statistiques [math.ST]. Université Paris Saclay (COmUE), 2017. Français. ⟨NNT : 2017SACLS048⟩
Thèse tel-01721318 v1