Julie AUBERT
75
Documents
Researcher identifiers
julie-aubert
-
0000-0001-5203-5748
- IdRef : 203352173
Presentation
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Nouveaux outils en bioremédiation : prédiction du potentiel de dégradation d’une communauté à partir de sa composition et création de communautés multidégradantes par coalescenceForum des Jeunes Chercheurs UBFC 2023, Jun 2023, Besançon, France
Conference papers
hal-04147435v1
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How do two strains of lactic acid bacteria cooperate to improve soy juice fermentation?16 th symposium on Bacterial Genetics and Ecology BAGECO 2023, https://bageco2023.org/committees/, Jul 2023, Copenhague., Denmark
Conference papers
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Métatranscriptomique et modèle métabolique pour identifier la succession des métabolismes bactériens en interaction lors de la fabrication d’un fromage modèle à pâte pressée.23ème édition du colloque du Club des Bactéries Lactiques, UMR INRAE - Institut Agro STLO (Science et Technologie du Lait et de l’Œuf), Jun 2022, Rennes, France
Conference papers
hal-03694338v1
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Metatranscriptomics and metabolic modeling to identify bacterial metabolic interactions during the manufacture of a model pressed cheese.FOODMICRO 2022, Aug 2022, Athènes, Greece
Conference papers
hal-03781287v1
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How LAB can cooperate to improve soy juice fermentation?NIZO Plant Protein Functionality Conference, Fred van de Velde (NIZO; chair) René Floris (NIZO) John Giezen (NIZO) Marie-Claire Morley (Elsevier), Oct 2020, Conference - Online., France
Conference papers
hal-02975394v1
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Plant genotype: a lever in the interactions between plant and its associated rhizosphere microbiome2nd Plant Microbiome Symposium, Feb 2018, Amsterdam, Netherlands
Conference papers
hal-04081016v1
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CHMM : an R package for coupled Hidden Markov ModelsR User Conference 2017, Jul 2017, Bruxelles, Belgium
Conference papers
hal-01661257v1
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Latent Block Model for metagenomic data17. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2016), Jun 2016, Lyon, France
Conference papers
hal-01661249v1
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Quels effets la diversité microbienne du sol a-t-elle sur la croissance et la santé des plantes ?Colloque de Génomique Environnementale, Oct 2015, Montpellier, France
Conference papers
hal-03349078v1
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Latent Block Model for ecological abundance data30. European Meeting of Statisticians, Jul 2015, Amsterdam, Netherlands
Conference papers
hal-01661254v1
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Latent Block Model for ecological abundance dataISB Channel Network, Apr 2015, Nimègues, Netherlands
Conference papers
hal-01661253v1
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Modèle à blocs latents pour l'analyse de données métagénomiques46. Journées de Statistique, Jun 2014, Rennes, France
Conference papers
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Metagenomics data analysis using a latent block model: application to plant-microbial communities interactions in the rhizosphere .ECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gôteborg, Sweden. pp.1
Conference papers
hal-01197629v1
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A multivariate HMM with dependency structure for the detection of copy number variations45e Journées de Statistique de la SfDS, May 2013, Toulouse, France
Conference papers
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An evaluation of normalization methods for the sequencing depth bias in comparative metagenomics studies5. Workshop Statistical Methods for Post-Genomic Data (SMPGD), Jan 2013, Amsterdam, Netherlands
Conference papers
hal-01661252v1
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Resilience in a cheese ecosystem14. Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2013, Jul 2013, Toulouse, France
Conference papers
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Comprehensive evaluation of normalization methods for High-throughput rnaSequencing Data analysis4 Workshop of StatSeq COST Action TD0801, Apr 2012, Vérone, Italy
Conference papers
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On the use of the negative binomial regression model for comparing differential expression or abundance with ngs data12.Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2011, Institut Pasteur [Paris]. FRA., Jun 2011, Paris, France
Conference papers
hal-01661248v1
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An insight into normal and pathological pregnancies using large-scale microarrays: lessons from microarrays7. International Workshop on Reproductive Immunology, Immunological Tolerance and Immunology of Preeclampsia, European Society for Reproductive Immunology (ESRI). POL., Aug 2010, Tioman Island, Malaysia. ⟨10.1016/j.jri.2010.12.006⟩
Conference papers
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The preconceptional endometrial environment affects both implantation and gestation in human7. ESRI, Sep 2009, Marathon, Greece
Conference papers
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Lowess extension to normalize three dyes cDNA microarray experimentsJournées Ouvertes Biologie Informatique Mathématiques, Jun 2008, Lille, France
Conference papers
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Impact du conceptus sur le transcriptome de l’endomètre bovin à l’implantation15. Rencontres autour des Recherches sur les Ruminants, Dec 2008, Paris, France
Conference papers
hal-01197538v1
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Statistical methodology for the analysis of dye-switch microarray experiments24. International Biometric Conference, Jul 2008, Dublin, Ireland. 17 p
Conference papers
hal-01197571v1
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Expression de gènes de l'immunité dans le tissu mammaire caprin gestantJournées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France
Conference papers
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AI or IVF-ET technologies differentially affect the bovine endometrial transcriptome at implantation24. Annual Meeting of The European Society for Human Reproduction and Embryology (ESHRE), Jul 2008, Barcelone, Spain
Conference papers
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Analysis of gene expression profiles in the ruminant endometrium using a 13K microarray2. International Meeting on Mammalian Embryogenomics, Oct 2007, Paris, France
Conference papers
hal-01197493v1
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Gene expression profiles in endometrium of cyclic and pregnant cows during the peri-implantation period3. EMBIC (EMBryo Implantation Control) Summer School, Sep 2007, Jena, Germany
Conference papers
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Statistical analysis for identifying differentially expressed genes in microarrays data, an overview2. International Meeting Mammalian Embryogenomics, Oct 2007, Paris, France
Conference papers
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Identification of genes involved in the implantation process in cattle3. EMBIC Summer School, Sep 2007, Jena, Germany
Conference papers
hal-01197496v1
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Unraveling biotic interactions determining soil microbial community assembly and functioningIX. Colloque de l'Association Francophone d'Ecologie Microbienne, AFEM 2019, Fonctions et diversité des microbiotes dans les environnements naturels et anthropisés, Nov 2019, Bussang, France. , 2019
Conference poster
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Latent Block Model for metagenomic data15. European Conference on Computational Biology (ECCB 2016), Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2016, La Haye, Netherlands. , 2016, Proceedings of the 15th European Conference on Computational Biology (ECCB 2016), Workshop "Recent Computational Advances in Metagenomics (RCAM)"
Conference poster
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Combining kinetic modeling and transcriptomic analysis to study the resilience 2014 on a model of microbial ecosystemECCB'14 : European Conference on Computational Biology, Sep 2014, Strasbourg, France. , 2014, Proceedings of the 14ème European Conference on Computational Biology
Conference poster
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How to Design a good RNA-Seq experiment in an interdisciplinary context?Conference poster hal-01462728v1 |
Soil microbial diversity effects on primary production and symbiotic interactions32. New Phytologist Symposium. Plant interactions with other organisms: molecules, ecology and evolution, Nov 2013, Buenos Aires, Argentina. , 2013
Conference poster
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Analyse de l’expression de Kluyveromyces lactis en interaction avec Brevibacterium aurantiacumJournées des Microbiologistes de l’INRA, Nov 2012, L’Isle-sur-la-Sorgue, France. 2012
Conference poster
hal-01566447v1
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Stratégie d’adaptation et de survie de Propionibacterium freudenreichii dans des conditions simulant celle du fromage à basse températureConference poster hal-01191287v1 |
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Adaptation and survival strategies of Propionibacterium freudenreichii under conditions mimicking cheese ripening in the coldConference poster hal-01191245v1 |
Chapter 6: Using Latent Block Models to Detect Structure in Ecological NetworksStatistical Approaches for Hidden Variables in Ecology., Wiley, pp.117-134, 2022, ⟨10.1002/9781119902799.ch6⟩
Book sections
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Qualité des données NGS : de la séquence aux bases de donnéesLa génomique environnementale, ISTE Editions, 180 p., 2016, 978-1-78405-151-8
Book sections
hal-01661251v1
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Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling2023
Preprints, Working Papers, ...
hal-04088301v2
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Analyse statistique de données biologiques à haut débitStatistiques [math.ST]. Université Paris Saclay (COmUE), 2017. Français. ⟨NNT : 2017SACLS048⟩
Theses
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