Julien Allali

28
Documents

Publications

Publications

Deposit thumbnail

A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets

Aarón Ayllón-Benítez , Fleur Mougin , Julien Allali , Rodolphe Thiébaut , Patricia Thebault

PLoS ONE, 2018, 13 (11), pp.e0208037. ⟨10.1371/journal.pone.0208037⟩

Article dans une revue hal-01938961v1
Deposit thumbnail

BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms

Julien Allali , Cédric Saule , Cedric Chauve , Yves d'Aubenton-Carafa , Alain Denise et al.

Advances in Bioinformatics, 2012, 2012, pp.1-5. ⟨10.1155/2012/893048⟩

Article dans une revue hal-00647725v1

Efficient chaining of seeds in ordered trees

Julien Allali , Cedric Chauve , Pascal Ferraro , Anne-Laure Gaillard

Journal of Discrete Algorithms, 2012

Article dans une revue hal-00647714v1

Toward a general framework for polyphonic comparison

Julien Allali , Pascal Ferraro , Pierre Hanna , C.S. Iliopoulos , Matthias Robine

Fundamenta Informaticae, 2009, 97 (3), pp.331--346

Article dans une revue hal-00523428v1
Deposit thumbnail

A multiple layer model to compare RNA secondary structures

Julien Allali , Marie-France Sagot

Software: Practice and Experience, 2008, 38 (8), pp.775-792. ⟨10.1002/spe.846⟩

Article dans une revue hal-00306662v1
Deposit thumbnail

Indexing gapped-factors using a tree

Pierre Peterlongo , Julien Allali , Marie-France Sagot

International Journal of Foundations of Computer Science, 2008, 19 (1), pp.71-87. ⟨10.1142/S0129054108005541⟩

Article dans une revue inria-00179719v1
Deposit thumbnail

A new distance for high level RNA secondary structure comparison

Julien Allali , Marie-France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2005, 2, pp.3--14

Article dans une revue hal-00306658v1
Deposit thumbnail

Rhoban Football Club: RoboCup Humanoid Kid-Size 2023 Champion Team Paper

Julien Allali , Adrien Boussicault , Cyprien Brocaire , Céline Dobigeon , Marc Duclusaud et al.

26th RoboCup International Symposium (RoboCup 2025), Jul 2023, Bordeaux, France. pp.325-336, ⟨10.1007/978-3-031-55015-7_27⟩

Communication dans un congrès hal-05310493v1
Deposit thumbnail

Chaining Sequence/Structure Seeds for Computing RNA Similarity

Laetitia Bourgeade , Cedric Chauve , Julien Allali

First Workshop on Computational Methods for Structural RNAs - CMRS'14, Sep 2014, Strasbourg, France

Communication dans un congrès hal-01019797v1
Deposit thumbnail

Efficient chaining of seeds in ordered trees

Julien Allali , Cédric Chauve , Pascal Ferraro , Anne-Laure Gaillard

21st International Workshop on Combinatorial Algorithms, Jul 2010, London, United Kingdom

Communication dans un congrès hal-00490028v1

Combinatorial detection of arrhytmia

Julien Allali , Pavlos Antoniou , Pascal Ferraro , C.S. Iliopoulos , Spiros Michalakopoulos

3rd International Conference on Bio-inspired Systems and Signal Processing, Jan 2010, Valencia, Spain. pp.180--187

Communication dans un congrès hal-00523484v1

Extending Alignment Algorithm for Polyphonic Comparison

Pascal Ferraro , Julien Allali , Pierre Hanna , Matthias Robine

International Computer Music Modeling and Retrieval Conference (CMMR), 2009, Denmark. pp.206-209

Communication dans un congrès hal-00391094v1

Validation and Decomposition of Partially Occluded Images with Holes

Pavlos Antoniou , Julien Allali , Costas Iliopoulos , Pascal Ferraro

Prague Stringology Conference, Aug 2009, Prague, Czech Republic. pp.129--136

Communication dans un congrès hal-00403709v1

Overlay problems for music and combinatorics

Julien Allali , Pavlos Antoniou , Pascal Ferraro , Costas Iliopoulos , Spiros Michalakopoulos

International Conference on Auditory Display, May 2009, Copenhagen, Denmark. pp.138--143

Communication dans un congrès hal-00411792v1

Benchmarking RNA secondary structure comparison algorithms

Julien Allali , Yves d'Aubenton-Carafa , Cedric Chauve , Alain Denise , Christine Drevet et al.

JOBIM'08, 2008, Lille, France. pp.67-68

Communication dans un congrès hal-00375710v1
Deposit thumbnail

Improvements of Alignment Algorithms for Polyphonic Music Retrieval

Pierre Hanna , Matthias Robine , Pascal Ferraro , Julien Allali

Computer Music Modeling and Retrieval 2008, 2008, Denmark. pp.244-251

Communication dans un congrès hal-00306949v1

Local Transpositions in Alignment of Polyphonic Musical Sequences

Julien Allali , Pascal Ferraro , Pierre Hanna , Costas Iliopoulos

Proceedings of the 14th String Processing and Information Retrieval Symposium (SPIRE07), 2007, Chile. pp.26-38

Communication dans un congrès hal-00307877v1
Deposit thumbnail

Adaptation of String Matching Algorithms for Identification of Near-Duplicate Music Documents

Matthias Robine , Pierre Hanna , Pascal Ferraro , Julien Allali

Workshop on Plagiarism Analysis, Authorship Identification, and Near-Duplicate Detection (PAN07), Jul 2007, Amsterdam, Netherlands. pp.37--43

Communication dans un congrès hal-00306567v1
Deposit thumbnail

The Gapped-Factor Tree

Pierre Peterlongo , Julien Allali , Marie-France Sagot

Prague Stringology Conference 2006, 2006, Prague, Czech Republic. pp.182--196

Communication dans un congrès hal-00306572v1
Deposit thumbnail

A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison

Julien Allali , Marie-France Sagot

String Processing and Information Retrieval 2005 (SPIRE 2005), Nov 2005, Buenos Aires, Argentina. pp.348--359, ⟨10.1007/11575832_39⟩

Communication dans un congrès hal-00306660v1
Deposit thumbnail

Novel tree edit operations for RNA secondary structure comparison

Julien Allali , Marie-France Sagot

Workshop on Algorithms in Bioinformatics 2004, 2004, Bergen, Denmark. pp.412--425, ⟨10.1007/978-3-540-30219-3_35⟩

Communication dans un congrès hal-00306661v1

Detection of Near-Duplicate Musical Documents from a Multi-Level Comparison of Tonal Information

Pascal Ferraro , Matthias Robine , Julien Allali , Pierre Hanna , Rocher Thomas

Information Extraction from the Internet, iconcept press, pp.129--143, 2011

Chapitre d'ouvrage hal-00643529v1

Polyphonic alignment algorithms for symbolic music retrieval

Julien Allali , Pascal Ferraro , Pierre Hanna , Matthias Robine

Ystad, S. and Aramaki, M. and Kronland-Martinet, R. and Jensen, K. Auditory Display, Springer Verlag Berlin, pp.466--482, 2010, LNCS, ⟨10.1007/978-3-642-12439-6_24⟩

Chapitre d'ouvrage istex hal-00523486v1
Deposit thumbnail

Comparaison de structures secondaires d'ARN

Julien Allali

Informatique [cs]. Université de Marne la Vallée, 2004. Français. ⟨NNT : ⟩

Thèse tel-00637131v1