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Julien Bobe

331
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Researcher identifiers

Presentation

**Current position**. Research Director (DR1) and director of the Fish Physiology and Genomics laboratory. **Employment history** \- - Ph.D. University of Rennes I (April 2001). \- - Habilitation à Diriger les Recherches, University of Rennes I (March 2009). \- - Visiting research student in Pr. FW Goetz Laboratory. 1998-2000 (Univ. Notre Dame, USA). \- - INRAE Research Scientist. 2001-2009 (SCRIBE Laboratory). \- - INRAE Research Director and group leader. 2010-2015 (Fish Physiology and Genomics Laboratory) \- Director of INRAE fish physiology and genomics laboratory (since 2016)

Publications

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Physical Enrichment Triggers Brain Plasticity and Influences Blood Plasma Circulating miRNA in Rainbow Trout (Oncorhynchus mykiss)

Emilie Cardona , Valentin Brunet , Léo Milhade , Sandrine Skiba-Cassy , Julien Bobe et al.
Biology, 2022, 11 (8), ⟨10.3390/biology11081093⟩
Journal articles hal-03755536v1
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auts2 Features and Expression Are Highly Conserved during Evolution despite Different Evolutionary Fates Following Whole Genome Duplication

Constance Merdrignac , Antoine Clement , Jérôme Montfort , Florent Murat , Julien Bobe et al.
Cells, 2022, 11 (17), pp.2694. ⟨10.3390/cells11172694⟩
Journal articles hal-03777731v1
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Effect of micro-algae Schizochytrium sp. supplementation in plant diet on reproduction of female rainbow trout (Oncorhynchus mykiss): maternal programming impact of progeny

Emilie Cardona , Emilien Segret , Yoann Cachelou , Thibaut Vanderesse , Laurence Larroquet et al.
Journal of Animal Science and Biotechnology , 2022, 13 (1), ⟨10.1186/s40104-022-00680-9⟩
Journal articles hal-03618877v1

Tissue origin of circulating microRNAs and their response to nutritional and environmental stress in rainbow trout (Oncorhynchus mykiss)

Emilie Cardona , Léo Milhade , Angéline Pourtau , Stéphane Panserat , Fréderic Terrier et al.
Science of the Total Environment, 2022, pp.158584. ⟨10.1016/j.scitotenv.2022.158584⟩
Journal articles hal-03775944v1
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Deciphering sex-specific miRNAs as heat-recorders in zebrafish

Tosca A van Gelderen , Jérôme Montfort , José Antonio Álvarez-Dios , Violette Thermes , Francesc Piferrer et al.
Scientific Reports, 2022, 12, pp.18722. ⟨10.1038/s41598-022-21864-3⟩
Journal articles hal-03886962v1
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Effect of a low water concentration in chloride, sodium and potassium on oocyte maturation, oocyte hydration, ovulation and egg quality in rainbow trout

Emilien Segret , Emilie Cardona , Sandrine Skiba-Cassy , Frédéric Cachelou , Julien Bobe et al.
Aquaculture, 2022, 546, pp.737374. ⟨10.1016/j.aquaculture.2021.737374⟩
Journal articles hal-03326018v1

Comparative proteomic analysis reveals the importance of the protective role of ovarian fluid over eggs during the reproduction of pikeperch

Joanna Nynca , Daniel Żarski , T. Froehlich , M. Koester , Julien Bobe et al.
Aquaculture, 2022, 548 (2), pp.737656. ⟨10.1016/j.aquaculture.2021.737656⟩
Journal articles hal-03737560v1

A nonfunctional copy of the salmonid sex-determining gene ( sdY ) is responsible for the “apparent” XY females in Chinook salmon, Oncorhynchus tshawytscha

Sylvain Bertho , Amaury Herpin , Elodie Jouanno , Ayaka Yano , Julien Bobe et al.
G3, 2022, 12 (2), pp.jkab451. ⟨10.1093/g3journal/jkab451⟩
Journal articles hal-03554338v1
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FishmiRNA: An evolutionarily supported microRNA annotation and expression database for ray-finned fishes

Thomas Desvignes , Philippe Bardou , Jérôme Montfort , Jason Sydes , Cervin Guyomar et al.
Molecular Biology and Evolution, 2022, 39 (2), pp.msac004. ⟨10.1093/molbev/msac004⟩
Journal articles hal-03528022v1

An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm et al.
Molecular Ecology Resources, 2022, 18 p. ⟨10.1111/1755-0998.13620⟩
Journal articles hal-03652234v1
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Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish

Daniel Żarski , Aurelie Le Cam , Thomas Frohlich , Miwako Kösters , Christophe C. Klopp et al.
Genomics, 2021, 113 (6), pp.3811-3826. ⟨10.1016/j.ygeno.2021.09.003⟩
Journal articles hal-03342588v1

Liquid Chromatography and Tandem Mass Spectrometry in Label-Free Protein Quantification of Zebrafish (Danio rerio) Eggs

Ozlem Yilmaz , Emmanuelle Com , Regis Lavigne , Charles Pineau , Julien Bobe et al.
Methods in Molecular Biology, 2021, 2218, pp.277-290. ⟨10.1007/978-1-0716-0970-5_22⟩
Journal articles hal-03150186v1

VisEgg: a robust phenotyping tool to assess rainbow trout egg features and viability

Emilie Cardona , Jérôme Bugeon , Emilien Segret , Julien Bobe
Fish Physiology and Biochemistry, 2021, 47 (3), pp.671-679. ⟨10.1007/s10695-020-00844-2⟩
Journal articles hal-03020814v1
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Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout

Emilie Cardona , Cervin Guyomar , Thomas Desvignes , Jérôme Montfort , Samia Guendouz et al.
BMC Biology, 2021, 19 (1), ⟨10.1186/s12915-021-01163-5⟩
Journal articles hal-03436712v1
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Evolution after whole genome duplication: teleost microRNAs

Thomas Desvignes , Jason Sydes , Jerôme Montfort , Julien Bobe , John Postlethwait et al.
Molecular Biology and Evolution, 2021, ⟨10.1093/molbev/msab105⟩
Journal articles hal-03205656v1

Allelic diversification after transposable element exaptation promoted Gsdf as the master sex determining gene of sablefish

Amaury Herpin , Manfred Schartl , Alexandra Depince , Yann Guiguen , Julien Bobe et al.
Genome Research, 2021, pp.gr.274266.120. ⟨10.1101/gr.274266.120⟩
Journal articles hal-03289901v1
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Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor quality eggs

Ozlem Yilmaz , Amelie Patinote , Emmanuelle Com , Charles Pineau , Julien Bobe et al.
BMC Genomics, 2021, 22 (1), pp.308. ⟨10.1186/s12864-021-07606-1⟩
Journal articles inserm-03218476v1
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Evolution of sex hormone binding globulins reveals early gene duplication at the root of vertebrates

Yann Guiguen , Jérémy Pasquier , Alexis Fostier , Julien Bobe
General and Comparative Endocrinology, 2021, 300, pp.1-8. ⟨10.1016/j.ygcen.2020.113646⟩
Journal articles hal-02987822v1
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A Comparison of Reproductive Performances in Young and Old Females: A Case Study on the Atlantic Bluefin Tuna in the Mediterranean Sea

Luca Marisaldi , Orsola Iorillo , Danilo Basili , Giorgia Gioacchini , Julien Bobe et al.
Animals, 2021, 11, ⟨10.3390/ani11123340⟩
Journal articles hal-03448300v1

Domestication modulates the expression of genes involved in neurogenesis in high‐quality eggs of Sander lucioperca

Daniel Żarski , Aurélie Le Cam , Joanna Nynca , Christophe C. Klopp , Sławomir Ciesielski et al.
Molecular Reproduction and Development, 2020, 87 (9), pp.934-951. ⟨10.1002/mrd.23414⟩
Journal articles hal-02935418v1
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Chaperone-Mediated Autophagy in the Light of Evolution: Insight from Fish

Laury Lescat , Vincent Veron , Brigitte Mourot , Sandrine Péron , Nathalie Chenais et al.
Molecular Biology and Evolution, 2020, 37 (10), pp.2887 - 2899. ⟨10.1093/molbev/msaa127⟩
Journal articles hal-03408346v1

C-ECi: a CUBIC-ECi combined clearing method for three-dimensional follicular content analysis in the fish ovary

Manon Lesage , Manon Thomas , Jérôme Bugeon , Adèle Branthonne , Stéphanie Gay et al.
Biology of Reproduction, 2020, 103 (5), pp.1099-1109. ⟨10.1093/biolre/ioaa142⟩
Journal articles hal-02935099v1
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Exploring the impact of a low-protein high-carbohydrate diet in mature broodstock of a glucose-intolerant teleost, the rainbow trout

Thérèse Callet , Huihua Hu , Laurence Larroquet , Anne Surget , Jingwei Liu et al.
Frontiers in Physiology, 2020, 11, ⟨10.3389/fphys.2020.00303⟩
Journal articles hal-02868956v1

Domestication is associated with differential expression of pikeperch egg proteins involved in metabolism, immune response and protein folding

J. Nynca , D. Żarski , Julien Bobe , A. Ciereszko
Animal, 2020, 14 (11), pp.2336-2350. ⟨10.1017/S1751731120001184⟩
Journal articles hal-02945163v1

Lighting chaperone-mediated autophagy (CMA) evolution with an ancient LAMP: the existence of a functional CMA activity in fish

Amaury Herpin , Laury Lescat , Julien Bobe , Andreas Jenny , Iban Seiliez et al.
Autophagy, 2020, 16 (10), pp.1918-1920. ⟨10.1080/15548627.2020.1797344⟩
Journal articles hal-02924565v1
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MicroRNAs related to cholesterol metabolism affected by vegetable diet in rainbow trout (Oncorhynchus mykiss) from control and selected lines

Tengfei Zhu , Geneviève Corraze , Elisabeth Plagnes-Juan , Jérôme Montfort , Julien Bobe et al.
Aquaculture, 2019, 498, pp.132-142. ⟨10.1016/j.aquaculture.2018.08.058⟩
Journal articles hal-01870570v1
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Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno et al.
PLoS Genetics, 2019, 15 (8), pp.e1008013. ⟨10.1371/journal.pgen.1008013⟩
Journal articles inserm-02279967v1

Positive impact of moderate food restriction on reproductive success of the rainbow trout Oncorhynchus mykiss

Emilie Cardona , Jérôme Bugeon , François Guivarc'H , Lionel Goardon , Stéphane Panserat et al.
Aquaculture, 2019, 502, pp.280-288. ⟨10.1016/j.aquaculture.2018.12.057⟩
Journal articles hal-01974617v1
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Domestication may affect the maternal mRNA profile in unfertilized eggs, potentially impacting the embryonic development of Eurasian perch (Perca fluviatilis)

Taina Rocha de Almeida , Maud Alix , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort et al.
PLoS ONE, 2019, 14 (12), pp.1-25. ⟨10.1371/journal.pone.0226878⟩
Journal articles hal-02627554v1
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Genome editing reveals reproductive and developmental dependencies on specific types of vitellogenin in zebrafish (Danio rerio)

Ozlem Yilmaz , Amélie Patinote , Thuy Thao Vi Nguyen , Emmanuelle Com , Charles Pineau et al.
Molecular Reproduction and Development, 2019, 86 (9), pp.1168-1188. ⟨10.1002/mrd.23231⟩
Journal articles hal-02278084v1
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Maternal temperature exposure triggers emotional and cognitive disorders and dysregulation of neurodevelopment genes in fish

Violaine Colson , Morgane Cousture , Danielle Damasceno , Claudiane Valotaire , Thuy Thao Vi Nguyen et al.
PeerJ, 2019, 7, pp.1-26. ⟨10.7717/peerj.6338⟩
Journal articles hal-01810424v2
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What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization

Caroline Cheung , Thuy Thao Vi Nguyen , Aurélie Le Cam , Amélie Patinote , Laurent Journot et al.
BMC Genomics, 2019, 20:584 (1), pp.1-14. ⟨10.1186/s12864-019-5930-8⟩
Journal articles hal-02185873v1
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MiR-202 controls female fecundity by regulating medaka oogenesis

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye et al.
PLoS Genetics, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩
Journal articles hal-01871468v1

Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes, transcripts and proteins, and relation to egg quality

Ozlem Yilmaz , Amélie Patinote , Thuy Thao Vi Nguyen , Julien Bobe
Fish Physiology and Biochemistry, 2018, 44 (6), pp.1509-1525. ⟨10.1007/s10695-018-0524-y⟩
Journal articles hal-02442684v1

Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'.

Ingo Braasch , Julien Bobe , Yann Guiguen , John H Postlethwait
Nature Genetics, 2018, 50 (7), pp.910-911. ⟨10.1038/s41588-018-0163-3⟩
Journal articles hal-01827943v1

CMA restricted to mammals and birds: myth or reality?

Laury Lescat , Amaury Herpin , Brigitte Mourot , Vincent Veron , Yann Guiguen et al.
Autophagy, 2018, 14 (7), pp.1267-1270. ⟨10.1080/15548627.2018.1460021⟩
Journal articles hal-01823223v1
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Double maternal-effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods

Caroline Cheung , Jérémy Pasquier , Aurélien Bouleau , Thuy Thao Vi Nguyen , Franck Chesnel et al.
BMC Evolutionary Biology, 2018, 18 (1), pp.1-16. ⟨10.1186/s12862-018-1281-3⟩
Journal articles hal-01923030v1
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Genes involved in Drosophila melanogaster ovarian function are highly conserved throughout evolution

Sébastien Elis , Alice Desmarchais , Emilie Cardona , Sophie Fouchécourt , Rozenn Dalbies-Tran et al.
Genome Biology and Evolution, 2018, 10 (10), pp.2629-2642. ⟨10.1093/gbe/evy158⟩
Journal articles hal-01991460v1
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Foxr1 is a novel maternal-effect gene in fish that is required for early embryonic success

Caroline Cheung , Amélie Patinote , Yann Guiguen , Julien Bobe
PeerJ, 2018, 6, pp.1-20. ⟨10.7717/peerj.5534⟩
Journal articles hal-01867990v1

Identification and characterization of a catechol-o-methyltransferase cDNA in the catfish Heteropneustes fossilis: tissue, sex and seasonal variations, and effects of gonadotropin and 2-hydroxyestradiol-17β on mRNA expression

R. Chaube , A. Rawat , R.M. Inbaraj , Julien Bobe , Yann Guiguen et al.
General and Comparative Endocrinology, 2017, 246, pp.129-141. ⟨10.1016/j.ygcen.2016.12.001⟩
Journal articles hal-02626727v1
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Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates

Lucie Marandel , Stéphane Panserat , Elisabeth Plagnes- Juan , Eva Arbenoits , José Luis Soengas et al.
BMC Genomics, 2017, 18 (1), pp.342. ⟨10.1186/s12864-017-3727-1⟩
Journal articles hal-01605942v1

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort et al.
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩
Journal articles hal-01788671v1
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Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio)

Ozlem Yilmaz , Amélie Patinote , Thuy Thao Vi Nguyen , Emmanuelle Com , Regis Lavigne et al.
PLoS ONE, 2017, 12 (11), pp.1-24. ⟨10.1371/journal.pone.0188084⟩
Journal articles hal-01640969v1

Maternal investment in fish oocytes and eggs: The molecular cargo and its contributions to fertility and early development

Esther Lubzens , Julien Bobe , Graham Young , Craig V. Sullivan
Aquaculture, 2017, Recent advances in fish gametes and embryo research, 472 (SI), pp.107-143. ⟨10.1016/j.aquaculture.2016.10.029⟩
Journal articles hal-01595234v1
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Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Cédric Cabau , Frédéric Escudie , Anis Djari , Yann Guiguen , Julien Bobe et al.
PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩
Journal articles hal-01506620v1
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The advantage of channeling nucleotides for very processive functions

Diana Zala , Uwe Schlattner , Thomas Desvignes , Julien Bobe , Aurélien Roux et al.
F1000Research, 2017, 6, pp.1-22. ⟨10.12688/f1000research.11561.2⟩
Journal articles hal-02377267v1
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Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen et al.
Scientific Reports, 2017, 7 (1), pp.1-11. ⟨10.1038/srep40241⟩
Journal articles hal-01594581v1

Transcriptomic profiling of egg quality in Sea bass (Dicentrarchus labrax) sheds light on genes involved in ubiquitination and translation

Daniel Żarski , Thuy Thao Vi Nguyen , Aurélie Le Cam , Jérôme Montfort , Gilbert Dutto et al.
Marine Biotechnology, 2017, 19 (1), pp.102-115. ⟨10.1007/s10126-017-9732-1⟩
Journal articles hal-01464069v1
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Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

Amélie Juanchich , Philippe Bardou , Olivier Rué , Jean-Charles Gabillard , Christine Gaspin et al.
BMC Genomics, 2016, 17:164 (1), pp.1-12. ⟨10.1186/s12864-016-2505-9⟩
Journal articles hal-01509042v1

Foxl2 and its relatives are evolutionary conserved players in gonadal sex differentiation

Sylvain Bertho , Jérémy Pasquier , Qiaowei Pan , Gaël Le Trionnaire , Julien Bobe et al.
Sexual Development, 2016, 10 (3), pp.111-29. ⟨10.1159/000447611⟩
Journal articles hal-01349550v1
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Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Jouanno , Dany Severac et al.
BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩
Journal articles hal-01487023v1

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Ingo Braasch , Andrew R. Gehrke , Jeramiah J. Smith , Kazuhiko Kawasaki , Tereza Manousaki et al.
Nature Genetics, 2016, 48 (6), pp.700-700
Journal articles hal-01594468v1
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Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context

Benjamin Geffroy , Florian Guilbaud , Elsa Amilhat , Laurent Beaulaton , Matthias Vignon et al.
Scientific Reports, 2016, 6 (1), pp.1-11. ⟨10.1038/srep34041⟩
Journal articles hal-01595531v1

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Ingo Braasch , Andrew R. Gehrke , Jeramiah J. Smith , Kazuhiko Kawasaki , Tereza Manousaki et al.
Nature Genetics, 2016, 48 (4), pp.427-437. ⟨10.1038/ng.3526⟩
Journal articles hal-01595410v1

Egg quality in fish: present and future challenges

Julien Bobe
Animal Frontiers, 2015, 5 (1), pp.66-72. ⟨10.2527/af.2015-0010⟩
Journal articles hal-02629618v1

Inhibition of zygotic DNA repair: transcriptome analysis of the offspring in trout [i](Oncorhynchus mykiss)[/i]

C. Fernández-Díez , S. González-Rojo , Jérôme Montfort , Aurélie Le Cam , Julien Bobe et al.
Reproduction, 2015, 149 (1), pp.101-111. ⟨10.1530/REP-14-0382⟩
Journal articles hal-01183015v1

Effects of the anti-androgen cyproterone acetate (CPA) on oocyte meiotic maturation in rainbow trout [i](Oncorhynchus mykiss)[/i]

Hélène Rime , Thuy Thao Vi Nguyen , Kévin Ombredane , Alexis Fostier , Julien Bobe et al.
Aquatic Toxicology, 2015, 164, pp.34-42. ⟨10.1016/j.aquatox.2015.04.009⟩
Journal articles hal-01182848v1

X-linked retinitis pigmentosa 2 is a novel maternal-effect gene required for left-right asymmetry in zebrafish

Thomas Desvignes , Thuy Thao Vi Nguyen , Frank Chesnel , Aurélien Bouleau , Christian Fauvel et al.
Biology of Reproduction, 2015, 93 (2), pp.42. ⟨10.1095/biolreprod.115.130575⟩
Journal articles hal-01206344v1

A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species

Anna Wargelius , Tomasz Furmanek , Jérôme Montfort , Aurélie Le Cam , Lene Kleppe et al.
Molecular Reproduction and Development, 2015, 82, pp.397-404. ⟨10.1002/mrd.22487⟩
Journal articles hal-01205122v1

Transfection of isolated rainbow trout, Oncorhynchus mykiss, granulosa cells through chemical transfection and electroporation at 12 °C

Elisa Marivin , Brigitte Mourot , P. Loyer , Hélène Rime , Julien Bobe et al.
General and Comparative Endocrinology, 2015, 221, pp.165-172. ⟨10.1016/j.ygcen.2015.03.012⟩
Journal articles hal-01151624v1

Sex hormone-binding globulins characterization and gonadal gene expression during sex differentiation in the rainbow trout, Oncorhynchus mykiss.

Elisa Marivin , Ayaka Yano , Adèle Branthonne , Thuy Thao Vi Nguyen , Alexis Fostier et al.
Molecular Reproduction and Development, 2014, 81, pp.757-765. ⟨10.1002/mrd.22344⟩
Journal articles hal-01205088v1

Maternally inherited npm2 mRNA is crucial for egg developmental competence in zebrafish.

Aurélien Bouleau , Thomas Desvignes , Juan Martin Traverso , Thuy Thao Vi Nguyen , Franck Chesnel et al.
Biology of Reproduction, 2014, 91 (2), pp.43. ⟨10.1095/biolreprod.114.119925⟩
Journal articles hal-01120330v1
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Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods.

Ingo Braasch , Yann Guiguen , Ryan Loker , John H Letaw , Allyse Ferrara et al.
Comparative Biochemistry and Physiology - Part C: Toxicology and Pharmacology, 2014, 163, pp.24-36. ⟨10.1016/j.cbpc.2014.01.005⟩
Journal articles hal-01205078v1
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Des animaux plus robustes : un enjeu majeur pour le développement durable des productions animales nécessitant l'essor du phénotypage fin et à haut débit

Florence Phocas , Julien Bobe , Loys Bodin , Bernard Charley , Jean-Yves Dourmad et al.
INRA Productions Animales, 2014, 27 (3), pp.181-194. ⟨10.20870/productions-animales.2014.27.3.3066⟩
Journal articles hal-01173636v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard et al.
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Journal articles hal-01193812v1

Gamete quality and broodstock management in temperate fish

Hervé Migaud , Gordon Bell , Elsa Cabrita , Brendan Mcandrew , Andrew Davie et al.
Reviews in Aquaculture, 2013, 5 (S1), pp.S194-S223. ⟨10.1111/raq.12025⟩
Journal articles hal-01205068v1

Identification of differentially expressed miRNAs and their potential targets during fish ovarian development

Amélie Juanchich , Aurélie Le Cam , Jérôme Montfort , Yann Guiguen , Julien Bobe et al.
Biology of Reproduction, 2013, 88 (5), pp.128, 1-11. ⟨10.1095/biolreprod.112.105361⟩
Journal articles hal-01205066v1
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The Nme gene family in fish.

Thomas Desvignes , Alexis Fostier , Christian Fauvel , Julien Bobe
Fish Physiology and Biochemistry, 2013, 39 (1), pp.53-58. ⟨10.1007/s10695-012-9639-8⟩
Journal articles hal-01205059v1

Do not put all teleosts in one net: focus on the sox2 and pou2 genes

Lucie Marandel , Catherine Labbé , Julien Bobe , Hélène Jammes , Jean-Jacques Lareyre et al.
Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, 2013, 164, pp.69-79. ⟨10.1016/j.cbpb.2012.10.005⟩
Journal articles hal-01000747v1

nanog 5'-upstream sequence, DNA methylation, and expression in gametes and early embryo reveal striking differences between teleosts and mammals

Lucie Marandel , Catherine Labbé , Julien Bobe , Pierre-Yves Le Bail
Gene, 2012, 492, pp.130-137. ⟨10.1016/j.gene.2011.10.037⟩
Journal articles hal-01205039v1

Evolutionary history of c-myc in teleosts and characterization of the duplicated c-myca genes in goldfish embryos

Lucie Marandel , Catherine Labbé , Julien Bobe , Pierre-Yves Le Bail
Molecular Reproduction and Development, 2012, 79 (2), pp.85-96. ⟨10.1002/mrd.22004⟩
Journal articles hal-01205046v1

The ovarian reserve in mammals: a functional and evolutionary perspective.

Philippe Monget , Julien Bobe , Alain Gougeon , Stéphane Fabre , Danielle Monniaux et al.
Molecular and Cellular Endocrinology, 2012, 356 (1-2), pp.2-12. ⟨10.1016/j.mce.2011.07.046⟩
Journal articles hal-00851759v1
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Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier Bouchez , Cédric Cabeau , Olivier Kah et al.
Gene, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩
Journal articles hal-01205069v1
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Oocyte-somatic cells interactions, lessons from evolution.

Cathy Charlier , Jérôme Montfort , Olivier Chabrol , Daphné Brisard , Thuy Thao Vi Nguyen et al.
BMC Genomics, 2012, 13 (1), pp.560. ⟨10.1186/1471-2164-13-560⟩
Journal articles hal-00753310v1

La néo-ovogenèse dans l'ovaire des vertébrés : une vision expérimentale et évolutive

Philippe Monget , Julien Bobe , A. Gougeon
Médecine Thérapeutique / Endocrinologie, 2011, 13 (1), pp.4-10
Journal articles hal-01129510v1

Aromatase expression in Xenopus oocytes: a three cell-type model for the ovarian estradiol synthesis.

Maella Gohin , Pascal Bodinier , Alexis Fostier , Julien Bobe , Franck Chesnel et al.
Journal of Molecular Endocrinology, 2011, 47 (2), pp.241-50. ⟨10.1530/JME-11-0080⟩
Journal articles inserm-00610146v1

Aromatase is expressed and active in the rainbow trout oocyte during final oocyte maturation.

Maella Gohin , Pascal Bodinier , Alexis Fostier , Franck Chesnel , Julien Bobe et al.
Molecular Reproduction and Development, 2011, 78 (7), pp.510-8. ⟨10.1002/mrd.21335⟩
Journal articles inserm-00604822v1
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The nme gene family in zebrafish oogenesis and early development

Thomas Desvignes , Christian Fauvel , Julien Bobe
Naunyn-Schmiedeberg's Archives of Pharmacology, 2011, 384 (4-5), pp.439-449. ⟨10.1007/s00210-011-0619-9⟩
Journal articles hal-01205026v1
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Cellular and molecular evidence for a role of tumor necrosis factor alpha in the ovulatory mechanism of trout

Diego Crespo , Emilie Bonnet , Nerea Roher , Simon Mackenzie , Aleksei Krasnov et al.
Reproductive Biology and Endocrinology, 2010, 8 (34), pp.1-14. ⟨10.1186/1477-7827-8-34⟩
Journal articles hal-01205017v1

The effects of immunostimulation through dietary manipulation in the rainbow trout; evaluation of mucosal immunity

Carmen Doñate , Joan Carles Balasch , Agnes Callol , Julien Bobe , Lluis Tort et al.
Marine Biotechnology, 2010, 12, pp.88-99. ⟨10.1007/S10126-009-9203-4⟩
Journal articles hal-01205009v1

Oogenesis in teleosts: How fish eggs are formed

Esther Lubzens , Graham Young , Julien Bobe , Joan Cerda
General and Comparative Endocrinology, 2010, 165 (3), pp.367-389. ⟨10.1016/j.ygcen.2009.05.022⟩
Journal articles hal-01205005v1

[/i]Prochloraz-induced oocyte maturation in rainbow trout ([i]Oncorhynchus mykiss[/i]), a molecular and functional analysis[i]

Hélène Rime , Thuy Thao Vi Nguyen , Julien Bobe , Alexis Fostier , Gilles Monod et al.
Toxicological Sciences, 2010, 118 (1), pp.61-70. ⟨10.1093/toxsci/kfq255⟩
Journal articles hal-01205007v1
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Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates.

Maella Gohin , Julien Bobe , Franck Chesnel
BMC Genomics, 2010, 11 (1), pp.18. ⟨10.1186/1471-2164-11-18⟩
Journal articles inserm-00451995v2

L'administration préovulatoire de lipopolysaccharides altère la qualité des ovules de truite arc-en-ciel

Julien Bobe
Aquafilia, 2010, 38, pp.19
Journal articles hal-02655008v1

Egg and sperm quality in fish

Julien Bobe , Catherine Labbé
General and Comparative Endocrinology, 2010, 165, pp.535-548. ⟨10.1016/j.ygcen.2009.02.011⟩
Journal articles hal-01205016v1
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Nme Gene Family Evolutionary History Reveals Pre-Metazoan Origins and High Conservation between Humans and the Sea Anemone, Nematostella vectensis

Thomas Desvignes , Pierre Pontarotti , Julien Bobe
PLoS ONE, 2010, 5:11 (e15506), pp.1-12. ⟨10.1371/journal.pone.0015506⟩
Journal articles hal-01204995v1

Lipopolysaccharide administration in preovulatory rainbow trout [i](Oncorhynchus mykiss)[/i] reduces egg quality

Diego Crespo , Josep V. Planas , Julien Bobe
Aquaculture, 2010, 300, pp.240-242. ⟨10.1016/j.aquaculture.2010.01.010⟩
Journal articles hal-01205021v1

Ovarian function of the trout preovulatory ovary: New insights from recent gene expression studies

Julien Bobe , Thuy Thao Vi Nguyen , Alexis Fostier
Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 2009, 153 (1), pp.63-68. ⟨10.1016/j.cbpa.2008.10.021⟩
Journal articles hal-02665403v1
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Diversity and biological significance of sex hormone-binding globulin in fish, an evolutionary perspective

Julien Bobe , Yann Guiguen , Alexis Fostier
Molecular and Cellular Endocrinology, 2009, 316 (1), pp.66. ⟨10.1016/j.mce.2009.09.017⟩
Journal articles hal-00550179v1

Characterization of goldfish fin cells in culture: some evidence of an epithelial cell profile.

Paul-Erwan Mauger , Catherine Labbé , Julien Bobe , Chantal Cauty , Isabelle Leguen et al.
Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, 2009, 152 (3), pp.205-15. ⟨10.1016/j.cbpb.2008.11.003⟩
Journal articles hal-00676723v1
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Nme protein family evolutionary history, a vertebrate perspective

Thomas Desvignes , Pierre Pontarotti , Christian Fauvel , Julien Bobe
BMC Evolutionary Biology, 2009, 9:256, pp.1-25. ⟨10.1186/1471-2148-9-256⟩
Journal articles hal-02663889v1

Functional genomics and proteomic approaches for the study of gamete formation and viability in farmed finfish

Joan Cerda , Julien Bobe , Pierre J. Babin , Arie Admon , Esther Lubzens et al.
Reviews in Fisheries Science, 2008, 16, pp.54-70. ⟨10.1080/10641260802324685⟩
Journal articles hal-02664918v1

A novel, functional, and highly divergent sex hormone-binding globulin that may participate in the local control of ovarian functions in salmonids

Julien Bobe , Sophie Mahé , Thuy Thao Vi Nguyen , Hélène Rime , Denise Vizziano et al.
Endocrinology, 2008, 149 (6), pp.2980-2989. ⟨10.1210/en.2007-1652⟩
Journal articles hal-02668537v1
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In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte

Julien Bobe , Thuy Thao Vi Nguyen , Sophie Mahé , Philippe Monget
BMC Genomics, 2008, 9:499, pp.1-16. ⟨10.1186/1471-2164-9-499⟩
Journal articles hal-02668508v1
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Microarray-based analysis of fish egg quality after natural or controlled ovulation

Alexis Fostier , Julien Bobe
BMC Genomics, 2007, 8:55, pp.1-17. ⟨10.1186/1471-2164-8-55⟩
Journal articles hal-02666486v1

Caractérisation détaillée de la qualité des ovules de truite arc-en-ciel et conditions d'élevage des géniteurs

Julien Bobe
Aquafilia, 2007, 21, pp.16
Journal articles hal-02653655v1

Characterization of rainbow trout egg quality: A case study using four different breeding protocols, with emphasis on the incidence of embryonic malformations

Alexis Fostier , Julien Bobe
Theriogenology, 2007, 67, pp.786-794. ⟨10.1016/j.theriogenology.2006.10.008⟩
Journal articles hal-02655438v1

Effect of photoperiod manipulation on rainbow trout (Oncorhynchus mykiss) egg quality: A genomic study

Jérôme Montfort , Diane D. Esquerre , Karine Hugot , Alexis Fostier , Julien Bobe et al.
Aquaculture, 2007, 268 (1-4), pp.13-22. ⟨10.1016/j.aquaculture.2007.04.027⟩
Journal articles hal-02664448v1
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Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte maturation and ovulation processes using cDNA microarrays

Julien Bobe , Jérôme Montfort , Thuy Thao Vi Nguyen , Alexis Fostier
Reproductive Biology and Endocrinology, 2006, 4:39, pp.1-16. ⟨10.1186/1477-7827-4-39⟩
Journal articles hal-02658072v1

Hydration of rainbow trout oocyte during meiotic maturation and in vitro regulation by 17,20ß-dihydroxy-4-pregnen-3-one and cortisol

Sylvain Milla , Bernard Jalabert , Hélène Rime , Patrick Prunet , Julien Bobe et al.
Journal of Experimental Biology, 2006, 209, pp.1147-1156. ⟨10.1242/jeb.02094⟩
Journal articles hal-02659421v1

Insulin-like growth factor-binding protein (IGFBP)-1, -2, -3, -4, -5, -6 and IGFBP-related protein 1 (IGFBP-rP1) during rainbow trout postvitellogenesis and oocyte maturation: molecular characterization, expression profiles, and hormonal regulation

Barzan Bahrami Kamangar , Jean-Charles Gabillard , Julien Bobe
Endocrinology, 2006, 147 (5), pp.2399-2410. ⟨10.1210/en.2005-1570⟩
Journal articles hal-02661717v1
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Two unrelated putative membrane-bound progestin receptors, progesterone membrane receptor component 1 (PGMRC1) and membrane progestin receptor (mPR) beta, are expressed in the rainbow trout oocyte and exhibit similar ovarian expression patterns

Brigitte Mourot , Thuy Thao Vi Nguyen , Alexis Fostier , Julien Bobe
Reproductive Biology and Endocrinology, 2006, 4:6, pp.1-14. ⟨10.1186/1477-7827-4-6⟩
Journal articles hal-02658809v1

Large-scale real-time PCR analysis of mRNA abundance in rainbow trout eggs in relationship with egg quality and post-ovulatory ageing

Sandrine Aegerter , Bernard Jalabert , Julien Bobe
Molecular Reproduction and Development, 2005, 72 (3), pp.377-385. ⟨10.1002/mrd.20361⟩
Journal articles hal-02676693v1

Vieillissement des ovules et performance de la reproduction chez la truite arc-en-ciel

Julien Bobe
Aquafilia, 2005, 6, pp.24
Journal articles hal-02671968v1
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Post-ovulatory ageing and egg quality: A proteomic analysis of rainbow trout coelomic fluid.

Hélène Rime , Nathalie Guitton , Charles Pineau , Emilie Bonnet , Julien Bobe et al.
Reproductive Biology and Endocrinology, 2004, 2, pp.1-10. ⟨10.1186/1477-7827-2-26⟩
Journal articles hal-02678718v1

Messenger RNA stockpile of cyclin B, insulin-like growth factor I, insulin-like growth factor II, insulin-like growth factor receptor Ib, and p53 in the rainbow trout oocyte in relation with developmental competence

Sandrine Aegerter , Bernard Jalabert , Julien Bobe
Molecular Reproduction and Development, 2004, 67 (2), pp.127-135. ⟨10.1002/mrd.10384⟩
Journal articles hal-02683546v1

Targeted gene expression profiling in the Rainbow trout (Oncorhynchus mykiss) ovary during maturational competence acquisition and oocyte maturation

Julien Bobe , Thuy Thao Vi Nguyen , Bernard Jalabert
Biology of Reproduction, 2004, 71 (1), pp.73-82. ⟨10.1095/biolreprod.103.025205⟩
Journal articles hal-02682674v1

Agonistic effect of imidazole and triazole fungicides on in vitro oocyte maturation in rainbow trout (Oncorhynchus mykiss)

Gilles Monod , Hélène Rime , Julien Bobe , Bernard Jalabert
Marine Environmental Research, 2004, 58 (2-5), pp.143-146. ⟨10.1016/j.marenvres.2004.03.008⟩
Journal articles hal-02677127v1

Rainbow trout follicular maturational competence acquisition is associated with an increased expression of follicle stimulating hormone receptor and insulin-like growth factor 2 messenger RNAs

Julien Bobe , Gersende Maugars , Thuy Thao Vi Nguyen , Hélène Rime , Bernard Jalabert et al.
Molecular Reproduction and Development, 2003, 66 (1), pp.46-53. ⟨10.1002/mrd.10334⟩
Journal articles hal-02669841v1

Specific gene expression profiles are associated with follicular maturational competence acquisition in rainbow trout (Oncorhynchus mykiss)

Julien Bobe , Gersende Maugars , Thuy Thao Vi Nguyen , Bernard Jalabert
Fish Physiology and Biochemistry, 2003, 28 (1-4), pp.309-311. ⟨10.1023/B:FISH.0000030566.12340.64⟩
Journal articles hal-02670168v1

mRNA stockpile and egg quality in rainbow trout (Oncorhynchus mykiss)

Sandrine Aegerter , Bernard Jalabert , Julien Bobe
Fish Physiology and Biochemistry, 2003, 28 (1-4), pp.317-318. ⟨10.1023/B:FISH.0000030568.30472.71⟩
Journal articles hal-02671124v1

A 3-day in vitro storage of rainbow trout (Oncorhynchus mykiss) unfertilised eggs in coelomic fluid at 12øC does not affect developmental success

Emilie Bonnet , Bernard Jalabert , Julien Bobe
Cybium : Revue Internationale d’Ichtyologie, 2003, 27 (1), pp.47-51. ⟨10.26028/cybium/2003-271-007⟩
Journal articles hal-02672376v1

Conservation of death receptor-6 in avian and piscine vertebrates

Jamie T. Bridgham , Julien Bobe , Frederick William Goetz , Alan L. Johnson
Biochemical and Biophysical Research Communications, 2001, 284 (5), pp.1109-1115. ⟨10.1006/bbrc.2001.5093⟩
Journal articles hal-02680110v1

An ovarian progastricsin is present in the trout coelomic fluid after ovulation

Julien Bobe , Frederick William Goetz
Biology of Reproduction, 2001, 64 (4), pp.1048-1055. ⟨10.1095/biolreprod64.4.1048⟩
Journal articles hal-02671610v1

A novel osteopontin-like protein is expressed in the trout ovary during ovulation

Julien Bobe , Frederick William Goetz
FEBS Letters, 2001, 489 (2-3), pp.119-124. ⟨10.1016/S0014-5793(01)02090-7⟩
Journal articles hal-02672368v1

Cysteine protease inhibitor is specifically expressed in pre- and early-vitellogenic oocytes from the brook trout periovulatory ovary

Julien Bobe , Frederick William Goetz
Molecular Reproduction and Development, 2001, 60, pp.312-318. ⟨10.1002/mrd.1093⟩
Journal articles hal-02676648v1

Molecular cloning and expression of a TNF receptor and two TNF ligands in the fish ovary

Julien Bobe , Frederick William Goetz
Comparative Biochemistry and Physiology Part B: Comparative Biochemistry, 2001, 129 (2-3), pp.475-481. ⟨10.1016/S1096-4959(01)00353-0⟩
Journal articles hal-02670891v1

A S100 homologue mRNA isolated by differential display PCR is down-regulated in the brook trout (Salvelinus fontinalis) post-ovulatory ovary

Julien Bobe , Frederick William Goetz
Gene, 2000, 257, pp.187-194. ⟨10.1016/S0378-1119(00)00406-6⟩
Journal articles hal-02691591v1

Embryonic muscle development in Rainbow trout (Oncorhynchus mykiss) : a scanning electron microscopy and immunohistological study

Julien Bobe , Sylvie André , Benoit Fauconneau
Journal of Experimental Zoology, 2000, 286, pp.379-389. ⟨10.1002/(SICI)1097-010X(20000301)286:4<379::AID-JEZ6>3.0.CO;2-2⟩
Journal articles hal-02689389v1

A tumor necrosis factor decoy receptor homologue is up-regulated in the brook trout (Salvelinus fontinalis) ovary at the completion of ovulation

Julien Bobe , Frederick William Goetz
Biology of Reproduction, 2000, 62, pp.420-426. ⟨10.1095/biolreprod62.2.420⟩
Journal articles hal-02693463v1

Role of maternally contributed auts2a in intergenerational determinism of fish neurodevelopment and behavior

Antoine Clement , Constance Merdrignac , Amaury Herpin , Violaine Colson , Julien Bobe et al.
14. International Congress on the Biology of Fish, Jun 2022, Montpellier, France
Conference papers hal-03739833v1

A comprehensive 3D approach to unravel follicular growth dynamics that governs fecundity in medaka fish (Oryzias latipes)

Manon Lesage , Jérôme Bugeon , Manon Thomas , Stéphanie Gay , Thierry Pécot et al.
14. International Congress on the Biology of Fish, Jun 2022, Montpellier, France
Conference papers hal-03764407v1

Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte

Julien Bobe
International Congress on the Biology of Fish - ICBF2022, Jun 2022, Montpellier, France
Conference papers hal-03777398v1

Circulating miRNAs (c-miRNAs) in biological fluids and miRNA genes annotation in rainbow trout

Julien Bobe
Plant and Animal Genome Meeting 2022, Jan 2022, San Diego, United States
Conference papers hal-03777324v1

Circulating miRNAs as biomarkers of reproduction, metabolic state, and egg quality

Julien Bobe
Genomics in Aquaculture 2022, May 2022, Granada, Spain
Conference papers hal-03777345v1

Génomique fonctionnelle du déterminisme maternel du neurodéveloppement et du comportement chez les vertébrés

Antoine Clement , Cervin Guyomar , Amaury Herpin , Violaine Colson , Julien Bobe et al.
Reprosciences 2021, Apr 2021, En ligne, France
Conference papers hal-03277813v1

Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte

Mariana Roza de Abreu , Julien Bobe
ReproScience 2021, Apr 2021, Webinar, France
Conference papers hal-03248173v1

Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte

Mariana Roza de Abreu , Julien Bobe
10. Annual Meeting of the EFOR Network, May 2021, Webinar, France
Conference papers hal-03248177v1

Functional Genomics of the Fish Oocyte.

Julien Bobe
IGDR Seminar Series, Mar 2019, Rennes, France
Conference papers hal-03795733v1

Circulating microRNA in plasma and ovarian fluid as potential non invasive biomarkers of nutrition and reproduction of female rainbow trout (Oncorhynchus mykiss)

Emilie Cardona , Jérôme Montfort , Hughes Parrinello , Laurent Journot , Julien Bobe et al.
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Conference papers hal-02284505v1

Functional and proteomic characterisation of salmonid coelomic fluid

Aurélie Guého , Hélène Rime , Emmanuelle Com , Régis Lavigne , Blandine Guevel et al.
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.59-59
Conference papers hal-03186872v1

Transcriptomic profiling reveals novel biomarkers of egg quality in domesticated pikeperch, Sander lucioperca

Daniel Zarski , Joanna Nynca , Aurélie Le Cam , Christophe C. Klopp , Sławomir Ciesielski et al.
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.69-70
Conference papers hal-02282331v1

Présentation du Laboratoire

Julien Bobe , Jean-Charles Gabillard , Yann Guiguen , Catherine Labbé
Space 2019, Sep 2019, Rennes, France
Conference papers hal-02935571v1

Difficulties to compare egg quality: insights from a transcriptomic analysis

Taina Rocha de Almeida , Julien Bobe , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort et al.
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.61-62
Conference papers hal-02282230v1

Gènes impliqués dans la fertilité femelle conservés au cours de l'évolution

Julien Bobe , Thuy Thao Vi Nguyen
3. Journées des Installations Expérimentales LPGP, Jun 2019, Rennes, France
Conference papers hal-03169655v1

Transcriptomic profiling of eggs of pikeperch (Sander lucioperca) reveals novel egg-quality-associated transcripts

D. Żarski , Aurélie Le Cam , J. Nynca , Christophe C. Klopp , S. Ciesielski et al.
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. 1672 p
Conference papers hal-02317179v1

VisEgg: an automatic phenotyping tool to assess rainbow trout unfertilized egg viability

Emilie Cardona , Jérôme Bugeon , Emilien Segret , Julien Bobe
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.68-68
Conference papers hal-02282238v1

Novel teleost whole-genome sequences for studying genome evolution after whole genome duplication

Julien Bobe
CIGENE seminars schedule spring 2019, Norwegian University of Life Sciences. NOR., Feb 2019, Oslo, Norway
Conference papers hal-02011373v1

What makes a fish egg able to be fertilized and subsequently develop into an embryo: new insights from CRISPR/Cas9 genome editing in model species

Caroline Cheung , Thuy Thao Vi Nguyen , Stéphanie Gay , Amélie Patinote , Emilie Cardona et al.
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Conference papers hal-02284510v1

Novel teleost genome sequences for studying genome evolution after whole genome duplication.

Julien Bobe
CIGENE Seminar Series, Feb 2019, Oslo, Norway
Conference papers hal-03795742v1

What makes a good egg: new insights from CRISPR/Cas9 genome editing in fish model species

Caroline Cheung , Thuy Thao Vi Nguyen , Stéphanie Gay , Amélie Patinote , Emilie Cardona et al.
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.71-72
Conference papers hal-02282328v1

Impact positif d’une restriction alimentaire modérée sur les performances de reproduction de la truite arc en ciel Oncorhynchus mykiss

Emilie Cardona , Jérôme Bugeon , François Guivarc'H , Lionel Goardon , Stéphane Panserat et al.
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Conference papers hal-02182571v1

L'usage d'édition de génomes chez les poissons modèles

Amaury Herpin , Julien Bobe
Comité d'éthique Inra Cirad Ifremer, Sep 2018, Jouy-en-Josas, France
Conference papers hal-01913020v1

Régulations épigénétiques induites par les nutriments chez la truite : modulation et conséquences

Lucie Marandel , Jingwei Liu , Julien Bobe , Jose Luis Soengas , Jan Mennigen et al.
Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. 98 p
Conference papers hal-01901323v1

Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: toward a better understanding of the functions of multiple duplicates

Lucie Marandel , Stéphane Panserat , Elisabeth Plagnes- Juan , Jose Luis Soengas , Julien Bobe et al.
13. International Congress on the Biology of Fish, Jul 2018, Calgary, Canada. 134 p
Conference papers hal-01901330v1
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A transcriptomic comparison suggests an influence of the domestication process on egg quality in Eurasian Perch (Perca fluviatilis)

Taina Rocha de Almeida , M. Alix , B. Schaerlinger , Aurélie Le Cam , Jérôme Montfort et al.
11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p
Conference papers hal-01812820v1
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Molecular portrait of egg quality and novel maternal-effect genes

Caroline Cheung , Thuy Thao Vi Nguyen , Aurélie Le Cam , Amélie Patinote , D. Zarski et al.
11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA, Jun 2018, Manaus, Brazil. 251 p
Conference papers hal-01809604v1
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Genome editing reveals developmental dependencies on specific types of vitellogenesis in Zebrafish (Danio rerio)

Ozlem Yilmaz , Amélie Patinote , Thuy Thao Vi Nguyen , Emmanuelle Com , Charles Pineau et al.
11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p
Conference papers hal-01809605v1

Egg transcriptome reveals molecular signature that can predict developmental competence and novel maternal-effect genes

Caroline Cheung , Thuy Thao Vi Nguyen , Aurélie Le Cam , Amélie Patinote , C. Reynes et al.
10. European Zebrafish Meeting, Jul 2017, Budapest, Hungary
Conference papers hal-01604755v1

Evolution of gene expression in fish: The PhyloFish database

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Dupin-De-Beyssat , Dany Severac et al.
8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States
Conference papers hal-01607208v1

MiR-202 knock-out in medaka drastically impairs female fertility

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Julien Bobe et al.
10. European Zebrafish Meeting, Jul 2017, Budapest, Hungary
Conference papers hal-01603044v1

Transcriptomic analysis of Eurasian perch (Perca fluviatilis) eggs assigned to distinct groups of quality

Taina Rocha de Almeida , Bérénice Schaerlinger , Aurélie Le Cam , Maud Alix , Jérôme Montfort et al.
6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p
Conference papers hal-01579299v1

Maternal-effect genes and egg quality: usual suspects and new players

Julien Bobe , Violette Thermes
6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p
Conference papers hal-01595100v1

Expression of miRNA and target genes was affected by genetic selection of rainbow trout and plant-based diet

Tengfei Zhu , Geneviève Corraze , Elisabeth Plagnes- Juan , Jérôme Montfort , Julien Bobe et al.
Aquaculture Europe 2017, European Aquaculture Society (EAS). BEL., Oct 2017, Dubrovnik, Croatia
Conference papers hal-01606808v1

New insights into the understanding of the carnovorous-related nutritionalmetabolism in rainbow trout through genes duplication : the glucose-6-phosphatase trail

Lucie Marandel , Wei Wei Dai , Sandrine Skiba-Cassy , José Luis Soengas , Julien Bobe et al.
16. Congreso Nacional de Acuicultura, Oct 2017, Saragosse, Spain
Conference papers hal-01901311v1

Identification of the master sex determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and the dynamic evolution of sex determination system within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat et al.
1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France
Conference papers hal-01594642v1

CRISPR/Cas9 disturbance of the multiple vitellogenin (vtg) system: essential functions of different vtg types during zebrafish egg, embryo and larval development

Ozlem Yilmaz , Amélie Patinote , Thuy Thao Vi Nguyen , Emmanuelle Com , Charles Pineau et al.
6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p
Conference papers hal-01595005v1

Mir-202 knock-out in medaka drastically impairs female fertility

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Julien Bobe et al.
2. Journées scientifiques GDR 3606 REPRO : ReproSciences 2017, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2017, Tours, France
Conference papers hal-01594638v1

Proteomics of egg quality in zebrafish

Ozlem Yilmaz , Emmanuelle Com , Regis Lavigne , Charles Pineau , Julien Bobe et al.
4. International Symposium on Genomics in Aquaculture, University of Nordland. NOR., Apr 2016, Athens, Greece
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Identification of the master determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat et al.
19. European Testis Workshop, Jun 2016, Saint-Malo, France
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Novel maternal transcripts that define fish egg quality

Caroline Cheung , Thuy Thao Vi Nguyen , Aurélie Le Cam , Amélie Patinote , Julien Bobe et al.
4. International Symposium on Genomics in Aquaculture, University of Nordland. NOR., Apr 2016, Athens, Greece
Conference papers hal-02742947v1

Proteomics of egg quality in zebrafish

Ozlem Yilmaz , Emmanuelle Com , Regis Lavigne , Charles Pineau , Julien Bobe et al.
5. International Workshop on the Biology of Fish Gametes, Università Politecnica delle Marche. ITA., Sep 2015, Ancona, Italy. 290 p
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Contribution of nucleoplasmin genes to egg developmental competence in fish