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Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
Cynthia Rodriguez
,
Ali Keshavarzian
,
Bruce Hamaker
,
Feitong Liu
,
Genelle Lunken
et al.
Article dans une revue
(data paper)
hal-04159505
v1
|
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Exploring Bifidobacterium species community and functional variations with human gut microbiome structure and health beyond infancy
Ruben Ladeira
,
Julien Tap
,
Muriel Derrien
Article dans une revue
hal-04059096
v1
|
|
Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors
Julien Tap
,
Franck Lejzerowicz
,
Aurélie Cotillard
,
Matthieu Pichaud
,
Daniel Mcdonald
et al.
Article dans une revue
hal-04159501
v1
|
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Representing Diet in a Tree-Based Format for Interactive and Exploratory Assessment of Dietary Intake Data
Nicole Litwin
,
Kalen Cantrell
,
Aurelie Cotillard
,
Muriel Derrien
,
Abigail Johnson
et al.
Article dans une revue
hal-03842852
v1
|
|
Human gut metatranscriptome changes induced by a fermented milk product are associated with improved tolerance to a flatulogenic diet
Iñigo Oyarzun
,
Boris Le Nevé
,
Francisca Yañez
,
Zixuan Xie
,
Matthieu Pichaud
et al.
Article dans une revue
hal-03842684
v1
|
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Drinking Water Source and Intake Are Associated with Distinct Gut Microbiota Signatures in US and UK Populations
Tiphaine Vanhaecke
,
Oriane Bretin
,
Marion Poirel
,
Julien Tap
Article dans une revue
hal-03842694
v1
|
|
A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project
Aurélie Cotillard
,
Agnès Cartier-Meheust
,
Nicole Litwin
,
Soline Chaumont
,
Mathilde Saccareau
et al.
Article dans une revue
hal-03858360
v1
|
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Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome
Julien Tap
,
Stine Störsrud
,
Boris Le Nevé
,
Aurélie Cotillard
,
Nicolas Pons
et al.
Article dans une revue
hal-03825700
v1
|
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A Fermented Milk Product Containing B. lactis CNCM I-2494 Improves the Tolerance of a Plant-Based Diet in Patients with Disorders of Gut–Brain Interactions
Boris Le Nevé
,
Adrian Martinez-de la Torre
,
Julien Tap
,
Adoración Nieto Ruiz
,
Muriel Derrien
et al.
Article dans une revue
hal-03825696
v1
|
|
A novel stepwise integrative analysis pipeline reveals distinct microbiota-host interactions and link to symptoms in irritable bowel syndrome
Annikka Polster
,
Lena Öhman
,
Julien Tap
,
Muriel Derrien
,
Boris Le Nevé
et al.
Article dans une revue
hal-03842701
v1
|
|
A Fermented Milk Product with B. lactis CNCM I-2494 and Lactic Acid Bacteria Improves Gastrointestinal Comfort in Response to a Challenge Diet Rich in Fermentable Residues in Healthy Subjects
Boris Le Nevé
,
Adrian Martinez-de la Torre
,
Julien Tap
,
Muriel Derrien
,
Aurélie Cotillard
et al.
Article dans une revue
hal-03842713
v1
|
|
Safety and functional enrichment of gut microbiome in healthy subjects consuming a multi-strain fermented milk product: a randomised controlled trial
Anne-Sophie Alvarez
,
Julien Tap
,
Isabelle Chambaud
,
Stéphanie Cools-Portier
,
Laurent Quinquis
et al.
Article dans une revue
hal-03842707
v1
|
|
Fasting breath H2 and gut microbiota metabolic potential are associated with the response to a fermented milk product in irritable bowel syndrome
Boris Le Nevé
,
Muriel Derrien
,
Julien Tap
,
Rémi Brazeilles
,
Stéphanie Cools Portier
et al.
Article dans une revue
hal-03842728
v1
|
|
Effects of the long-term storage of human fecal microbiota samples collected in RNAlater
Julien Tap
,
Stéphanie Cools-Portier
,
Sonia Pavan
,
Anne Druesne
,
Lena Öhman
et al.
Article dans une revue
hal-03842735
v1
|
|
Prediction of the intestinal resistome by a three-dimensional structure-based method
Etienne Ruppé
,
Amine Ghozlane
,
Julien Tap
,
Nicolas Pons
,
Anne-Sophie Alvarez
et al.
Article dans une revue
pasteur-02552015
v1
|
|
Evidence for an association of gut microbial Clostridia with brain functional connectivity and gastrointestinal sensorimotor function in patients with irritable bowel syndrome, based on tripartite network analysis
Jennifer Labus
,
Vadim Osadchiy
,
Elaine Hsiao
,
Julien Tap
,
Muriel Derrien
et al.
Article dans une revue
hal-03842722
v1
|
|
Fecal chromogranins and secretogranins are linked to the fecal and mucosal intestinal bacterial composition of IBS patients and healthy subjects
Johanna Sundin
,
Mats Stridsberg
,
Julien Tap
,
Muriel Derrien
,
Boris Le Neve
et al.
Article dans une revue
hal-02621185
v1
|
|
Altered intestinal antibacterial gene expression response profile in irritable bowel syndrome is linked to bacterial composition and immune activation
Sean M. P. Bennet
,
Johanna Sundin
,
Maria K. Magnusson
,
Hans Strid
,
Julien Tap
et al.
Article dans une revue
hal-02621411
v1
|
|
Altered intestinal antibacterial gene expression response profile in irritable bowel syndrome is linked to bacterial composition and immune activation
Sean Bennet
,
Johanna Sundin
,
Maria Magnusson
,
Hans Strid
,
Julien Tap
et al.
Article dans une revue
hal-03842742
v1
|
|
Faecal microbiota study reveals specific dysbiosis in spondyloarthritis
Maxime Breban
,
Julien Tap
,
Ariane Leboime
,
Roula Said-Nahal
,
Philippe Langella
et al.
Article dans une revue
hal-03856549
v1
|
|
Early Phenotypical Changes Induced By Transfer Of Human Fecal Microbiota from Colorectal Cancer Patients To Germ-Free Mice
Julien Tap
,
Aurélien Amiot
,
Véronique Jarrousse
,
Sandra Guilmeau
,
Jeanne Tran Vannhieu
et al.
Article dans une revue
hal-03825702
v1
|
|
Faecal microbiota study reveals specific dysbiosis in spondyloarthritis
Maxime Breban
,
Julien Tap
,
Ariane Leboime
,
Roula Said-Nahal
,
Philippe Langella
et al.
Article dans une revue
hal-03998743
v1
|
|
Identification of an intestinal microbiota signature associated with severity of irritable bowel syndrome
Julien Tap
,
Muriel Derrien
,
Hans Toernblom
,
Remi Brazeilles
,
Stephanie Cools-Portier
et al.
Article dans une revue
hal-01606058
v1
|
|
Transcriptional interactions suggest niche segregation among microorganisms in the human gut
Damian Rafal Plichta
,
Agnieszka Sierakowska Juncker
,
Marcelo Bertalan
,
Elizabeth Rettedal
,
Laurent Gautier
et al.
Article dans une revue
hal-01533942
v1
|
|
It's all in the mix: diagnosis and management of food intolerance reply
Boris Le Neve
,
Remi Brazeilles
,
Muriel Derrien
,
Julien Tap
,
Denis Guyonnet
et al.
Article dans une revue
hal-01602460
v1
|
|
Lactulose challenge determines visceral sensitivity and severity of symptoms in patients with irritable bowel Syndrome
Boris Le Neve
,
Remi Brazeilles
,
Muriel Derrien
,
Julien Tap
,
Denis Guyonnet
et al.
Article dans une revue
hal-02637360
v1
|
|
Microbiote intestinal, la clé pour une meilleure alimentation ?
Patrick Veiga
,
Julien Tap
,
Muriel Derrien
Article dans une revue
hal-03856562
v1
|
|
Lactulose Challenge Determines Visceral Sensitivity and Severity of Symptoms in Patients With Irritable Bowel Syndrome
Boris Le Nevé
,
Rémi Brazeilles
,
Muriel Derrien
,
Julien Tap
,
Denis Guyonnet
et al.
Article dans une revue
hal-03842751
v1
|
|
Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults
Julien Tap
,
Jean-Pierre Furet
,
Martine Bensaada
,
Catherine Philippe
,
Hubert Roth
et al.
Article dans une revue
istex
hal-01439024
v1
|
|
Metagenomics of the human intestinal tract: from who is there to what is done there
Antonietta Cultrone
,
Julien Tap
,
Nicolas Lapaque
,
Joël Doré
,
Herve H. Blottiere
Article dans une revue
hal-02632823
v1
|
|
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
Kristoffer Forslund
,
Falk Hildebrand
,
Trine Nielsen
,
Gwen Falony
,
Emmanuelle Le Chatelier
et al.
Article dans une revue
hal-01535324
v1
|
|
An integrated catalog of reference genes in the human gut microbiome
Junhua Li
,
Huijue Jia
,
Xianghang Cai
,
Huanzi Zhong
,
Qiang Feng
et al.
Article dans une revue
hal-01195478
v1
|
|
Individuality and temporal stability of the human gut microbiome
Shinichi Sunagawa
,
Siegfried Schloissnig
,
Manimozhiyan Arumugam
,
Kristoffer Forslund
,
Makedonka Mitreva
et al.
Article dans une revue
hal-03857098
v1
|
|
Potential of fecal microbiota for early‐stage detection of colorectal cancer
Georg Zeller
,
Julien Tap
,
Anita Voigt
,
Shinichi Sunagawa
,
Jens Roat Kultima
et al.
Article dans une revue
hal-03856437
v1
|
|
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
H Bjørn Nielsen
,
Mathieu Almeida
,
Agnieszka Sierakowska Juncker
,
Simon Rasmussen
,
Junhua Li
et al.
Article dans une revue
hal-01195477
v1
|
|
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam
,
Jeroen Raes
,
Eric Pelletier
,
Denis Le Paslier
,
Takuji Yamada
et al.
Article dans une revue
hal-03649169
v1
|
|
Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes
Ling-Chun Kong
,
Julien Tap
,
Judith Aron-Wisnewsky
,
Véronique Pelloux
,
Arnaud Basdevant
et al.
Article dans une revue
hal-02652440
v1
|
|
Metagenomic species profiling using universal phylogenetic marker genes
Shinichi Sunagawa
,
Daniel R. Mende
,
Georg Zeller
,
Fernando Izquierdo-Carrasco
,
Simon A. Berger
et al.
Article dans une revue
hal-01204281
v1
|
|
Richness of human gut microbiome correlates with metabolic markers
Emmanuelle Le Chatelier
,
Trine Nielsen
,
Junjie Qin
,
Edi Prifti
,
Falk Hildebrand
et al.
Article dans une revue
hal-01190602
v1
|
|
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Philip Supply
,
Michael Marceau
,
Sophie Mangenot
,
David Roche
,
Carine Rouanet
et al.
Article dans une revue
pasteur-02615220
v1
|
|
Microbial Dysbiosis in Colorectal Cancer (CRC) Patients
Iradj Sobhani
,
Julien Tap
,
Francoise Roudot-Thoraval
,
Jean P. Roperch
,
Sophie Letulle
et al.
Article dans une revue
hal-01190486
v1
|
|
Identification of NF-kappa B Modulation Capabilities within Human Intestinal Commensal Bacteria
Omar O. Lakhdari
,
Julien Tap
,
Fabienne Beguet-Crespel
,
Karine K. Le Roux
,
Tomas T. de Wouters
et al.
Article dans une revue
hal-01000996
v1
|
|
Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-kappa B modulation in the human gut
Omar Lakhdari
,
Antonietta Cultrone
,
Julien Tap
,
Karine Gloux
,
Francoise Bernard
et al.
Article dans une revue
hal-01204302
v1
|
|
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin
,
Ruiqiang Li
,
Jeroen Raes
,
Manimozhiyan Arumugam
,
Kristoffer Solvsten Burgdorf
et al.
Article dans une revue
cea-00908974
v1
|
|
Differential Adaptation of Human Gut Microbiota to Bariatric Surgery-Induced Weight Loss Links With Metabolic and Low-Grade Inflammation Markers
J-Pierre J.-P. Furet
,
Ling-Chun Kong
,
Julien Tap
,
Christine Poitou
,
Arnaud Basdevant
et al.
Article dans une revue
hal-02668840
v1
|
|
Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
Lena Tasse
,
Juliette Bercovici
,
Sandra Pizzut-Serin
,
Patrick Robe
,
Julien Tap
et al.
Article dans une revue
hal-01204274
v1
|
|
Towards the human intestinal microbiota phylogenetic core
Julien Tap
,
Stanislas Mondot
,
Florence F. Levenez
,
Eric Pelletier
,
Christophe C. Caron
et al.
Article dans une revue
istex
hal-02667864
v1
|
|
Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR
Jean-Pierre Furet
,
Olivier Firmesse
,
Michèle Gourmelon
,
Chantal Bridonneau
,
Julien Tap
et al.
Article dans une revue
hal-02667876
v1
|
|
Towards the human intestinal microbiota phylogenetic core
Julien Tap
,
Stanislas Mondot
,
Florence Levenez
,
Eric Pelletier
,
Christophe Caron
et al.
Article dans une revue
istex
hal-03842787
v1
|