Laurent Cauquil

141

Documents

Current affiliations

1002449
1058695

Researcher identifiers

laurent-cauquil
0000-0002-0384-8811

Publications

	The potential of microbiota information to better predict efficiency traits in growing pigs fed a conventional and a high-fiber diet Vanille Déru , Francesco Tiezzi , Céline Carillier-Jacquin , Benoit Blanchet , Laurent Cauquil Genetics Selection Evolution, 2024, 56 (1), pp.8. ⟨10.1186/s12711-023-00865-4⟩ Journal articles hal-04406063v1
	Coprophagia in early life tunes expression of immune genes after weaning in rabbit ileum Laurent Cauquil , Martin Beaumont , B. Schmaltz-Panneau , Laurence Liaubet , Yannick Lippi Scientific Reports, 2024, 14 (1), pp.8898. ⟨10.1038/s41598-024-59591-6⟩ Journal articles hal-04550565v1
	Milk replacer feeding once or twice a day did not change the ruminal metabolomic profile and the microbial diversity of dairy calves from birth to weaning A. Zened , C. Julien , L. Cauquil , Géraldine Pascal , C. Canlet Journal of Dairy Science, 2024, 107 (8), pp.5574-5586. ⟨10.3168/jds.2023-24327⟩ Journal articles hal-04667561v1
	Effect of dietary supplementation with algae extracts on growth performance and caecal microbiota of broiler chickens E. Coudert , Elisabeth Baéza , Olivier Zemb , A. Bousleh , Laurent Cauquil British Poultry Science, inPress, pp.1-12. ⟨10.1080/00071668.2024.2328676⟩ Journal articles hal-04537307v1
	A multi-omics dataset of the response to early plant polysaccharide ingestion in rabbits Charlotte Paës , Martin Beaumont , Thierry Gidenne , Karine Bébin , Joël Duperray Scientific Data , 2024, 11 (1), pp.684. ⟨10.1038/s41597-024-03471-1⟩ Journal articles hal-04634098v1
	The Early Life Microbiota Is Not a Major Factor Underlying the Susceptibility to Postweaning Diarrhea in Piglets Martin Beaumont , Corinne Lencina , Allan Bertide , Lise Gallo , Céline Barilly Microbiology Spectrum, 2023, 11 (4), ⟨10.1128/spectrum.00694-23⟩ Journal articles hal-04400310v1
	Integrating data from spontaneous and induced trans-10 shift of ruminal biohydrogenation reveals discriminant bacterial community changes at the OTU level Francis Enjalbert , Asma Zened , Laurent Cauquil , Annabelle Meynadier Frontiers in Microbiology, 2023, 13, pp.1012341. ⟨10.3389/fmicb.2022.1012341⟩ Journal articles hal-04029019v1
	Developmental Stage, Solid Food Introduction and Suckling Cessation Differentially Influence the Co-maturation of the Gut Microbiota and Intestinal Epithelium in Rabbits Martin Beaumont , Eloïse Mussard , Céline Barilly , Corinne Lencina , Laure Gress Journal of Nutrition, 2022, 152 (3), pp.723-736. ⟨10.1093/jn/nxab411⟩ Journal articles hal-03480940v1
	Gut microbiota and host genetics contribute to the phenotypic variation of digestive and feed efficiency traits in growing pigs fed a conventional and a high fiber diet Vanille Déru , Francesco Tiezzi , Céline Carillier-Jacquin , Benoit Blanchet , Laurent Cauquil Genetics Selection Evolution, 2022, 54 (1), pp.55. ⟨10.1186/s12711-022-00742-6⟩ Journal articles hal-03749652v1
	Genetic relationships between efficiency traits and gut microbiota traits in growing pigs fed a conventional or a high fiber diet Vanille Déru , Alban Bouquet , Olivier Zemb , Benoît Blanchet , Marie-Léa de Almeida Journal of Animal Science, 2022, 100 (6), pp.skac183. ⟨10.1093/jas/skac183⟩ Journal articles hal-03671011v1
	Microbiability and microbiome-wide association analyses of feed efficiency and performance traits in pigs Amir Aliakbari , Olivier Zemb , Laurent Cauquil , Céline Barilly , Yvon Billon Genetics Selection Evolution, 2022, 54 (1), 15 p. ⟨10.1186/s12711-022-00717-7⟩ Journal articles hal-03650709v1
	Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions Charlotte Paës , Thierry Gidenne , Karine Bébin , Joël Duperray , Charly Gohier mSystems, 2022, 18 p. ⟨10.1128/msystems.00243-22⟩ Journal articles hal-03699002v1
	The phenotype of the gut region is more stably retained than developmental stage in piglet intestinal organoids Eloïse Mussard , Corinne Lencina , Lise Gallo , Céline Barilly , Maryse Poli Frontiers in Cell and Developmental Biology, 2022, 10, 14 p. ⟨10.3389/fcell.2022.983031⟩ Journal articles hal-03788364v1
	Impact of feed restriction and fragmented feed distribution on performance, intake behaviour and digestion of the growing rabbit Mélanie Martignon , Christine Burel , Laurent Cauquil , Sylvie Combes , Thierry Gidenne Animal, 2021, 15 (7), ⟨10.1016/j.animal.2021.100270⟩ Journal articles hal-03289744v1
	The intestinal microbial composition in Greylag geese differs with steatosis induction mode: spontaneous or induced by overfeeding Christelle Knudsen , Julien Arroyo , Maxime Even , Laurent Cauquil , Géraldine Pascal Animal Microbiome, 2021, 3 (1), ⟨10.1186/s42523-020-00067-z⟩ Journal articles hal-03109374v1
	Bacterial Consumption of T4 Phages Jean-Jacques Godon , Ariane Bize , Hoang Ngo , Laurent Cauquil , Mathieu Almeida Microorganisms, 2021, 9 (9), pp.1852. ⟨10.3390/microorganisms9091852⟩ Journal articles hal-03386267v1
	Gut Microbiota-Derived Metabolite Signature in Suckling and Weaned Piglets Martin Beaumont , Laurent Cauquil , Allan Bertide , Ingrid Ahn , Céline Barilly Journal of Proteome Research, 2021, 20 (1), pp.982-994. ⟨10.1021/acs.jproteome.0c00745⟩ Journal articles hal-03087209v1
	Effect of Litter Treatment on Campylobacter jejuni in Broilers and on Cecal Microbiota Amandine Thépault , Xavier Roulleau , Pauline Loiseau , Laurent Cauquil , Typhaine Poezevara Pathogens, 2020, 9 (5), ⟨10.3390/pathogens9050333⟩ Journal articles hal-02902714v1
	Early inoculation of microbial suspension in suckling piglets affects the transmission of maternal microbiota and the associated antibiotic resistance genes Caroline Achard , Véronique Dupouy-Guiraute , Laurent Cauquil , Nathalie Arpaillange , Alain Bousquet‐mélou Microorganisms, 2020, 8 (10), pp.1576. ⟨10.3390/microorganisms8101576⟩ Journal articles hal-03106275v1
	Dietary composition and yeast-microalgae combination supplementation modulate the microbial ecosystem in the caecum, colon and faeces of horses Pauline Grimm , Sylvie Combes , Géraldine Pascal , Laurent Cauquil , Véronique Julliand British Journal of Nutrition, 2020, 123 (4), pp.372-382. ⟨10.1017/S0007114519002824⟩ Journal articles hal-02381031v1
	Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard Olivier Zemb , Caroline Achard , Jérôme Hamelin , Marie‐léa de Almeida , Beatrice Gabinaud MicrobiologyOpen, 2020, 9 (3), Non paginé. ⟨10.1002/mbo3.977⟩ Journal articles hal-02625681v1
	Gut microbiota derived metabolites contribute to intestinal barrier maturation at the suckling-to-weaning transition Martin Beaumont , Charlotte Paes , Eloïse Mussard , Christelle Knudsen , Laurent Cauquil Gut microbes, 2020, 11 (5), pp.1268-1286. ⟨10.1080/19490976.2020.1747335⟩ Journal articles hal-02564848v1
	Variability of the Ability of Complex Microbial Communities to Exclude Microbes Carrying Antibiotic Resistance Genes in Rabbits Caroline Achard , Véronique Dupouy-Guiraute , Suzanne Siviglia , Nathalie Arpaillange , Laurent Cauquil Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.01503⟩ Journal articles hal-02619189v1
	Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué Cahier des Techniques de l'INRA, 2019, 97, pp.46-69 Journal articles hal-02311421v1
	Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits Tehya Read , Laurence Fortun-Lamothe , Géraldine Pascal , Malo Le Boulch , Laurent Cauquil Frontiers in Microbiology, 2019, 10, Non paginé. ⟨10.3389/fmicb.2019.00973⟩ Journal articles hal-02154596v1
	FROGS: Find, Rapidly, OTUs with Galaxy Solution Frédéric Escudié , Lucas Auer , Maria Bernard , Mahendra Mariadassou , Laurent Cauquil Bioinformatics, 2018, 34 (8), pp.1287-1294. ⟨10.1093/bioinformatics/btx791⟩ Journal articles hal-02626808v1
	Fumonisin-Exposure Impairs Age-Related Ecological Succession of Bacterial Species in Weaned Pig Gut Microbiota Ivan Mateos , Sylvie Combes , Géraldine Pascal , Laurent Cauquil , Céline Barilly Toxins, 2018, 10 (6), pp.230. ⟨10.3390/toxins10060230⟩ Journal articles hal-01829232v1
	Impact of feed restriction and housing hygiene conditions on specific and inflammatory immune response, the cecal bacterial community and the survival of young rabbits Sylvie Combes , Katia Julian , Océane Martin , Hauteclaire Furbeyre , Laurent Cauquil Animal, 2017, 11 (5), pp.854-863. ⟨10.1017/S1751731116002007⟩ Journal articles hal-01605508v1
	Interaction between Live Yeast and Dietary Rumen Degradable Protein Level: Effects on Diet Utilization in Early-Lactating Dairy Cows Christine Julien , Jean Philippe Marden , Eric Auclair , Raymond Moncoulon , Laurent Cauquil Agricultural Sciences, 2015, 06 (01), pp.1-13. ⟨10.4236/as.2015.61001⟩ Journal articles hal-02634862v1
	Coprophagous behavior of rabbit pups affects implantation of cecal microbiota and health status Sylvie Combes , Thierry Gidenne , Laurent L. Cauquil , Olivier O. Bouchez , Laurence Fortun-Lamothe Journal of Animal Science, 2014, 92 (2), pp.652-665. ⟨10.2527/jas.2013-6394⟩ Journal articles hal-02640171v1
	Acaricidal activity of five essential oils of Ocimum species on Rhipicephalus (Boophilus) microplus larvae. Thomas Hüe , Laurent Cauquil , Jean-Baptiste Hzounda Fokou , Pierre Michel Jazet Dongmo , Issakou Bakarnga-Via Parasitology Research, 2014, pp.1-9. ⟨10.1007/s00436-014-4164-6⟩ Journal articles hal-01092340v1
	Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential over three periods Mikael Rey , Francis Enjalbert , Sylvie Combes , Laurent L. Cauquil , Olivier O. Bouchez Journal of Applied Microbiology, 2014, 116 (2), pp.245-257. ⟨10.1111/jam.12405⟩ Journal articles hal-02641546v1
	Lactobacillus sakei modulates mule duck microbiota in ileum and ceca during overfeeding Florian Vasaï , Karine Brugirard Ricaud , Laurent Cauquil , Patrick Daniel , Céline Peillod Poultry Science, 2014, 93, pp.916 - 925. ⟨10.3382/ps.2013-03497⟩ Journal articles hal-04207073v1
	Overfeeding and genetics affect the composition of intestinal microbiota in Anas platyrhynchos (Pekin) and Cairina moschata (Muscovy) ducks Florian Vasaï , Karine Ricaud , Marie-Dominique Bernadet , Laurent L. Cauquil , Olivier O. Bouchez FEMS Microbiology Ecology, 2014, 87 (1), pp.204-216. ⟨10.1111/1574-6941.12217⟩ Journal articles hal-02636624v1
	OligoSpecificitySystem: global matching efficiency calculation of oligonucleotide sets taking into account degeneracy and mismatch possibilities Rory Michelland , Sylvie Combes , Laurent L. Cauquil International Journal of Data Mining and Bioinformatics, 2014, 9 (4), pp.417-423. ⟨10.1504/IJDMB.2014.062148⟩ Journal articles hal-02633626v1
	Engineering the rabbit digestive ecosystem to improve digestive health and efficacy Sylvie Combes , Laurence Fortun-Lamothe , Laurent L. Cauquil , Thierry Gidenne Animal, 2013, 7 (9), pp.1429-1439. ⟨10.1017/S1751731113001079⟩ Journal articles hal-02646934v1
	Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets Asma Zened , Sylvie Combes , Laurent L. Cauquil , Jérôme J. Mariette , Christophe Klopp FEMS Microbiology Ecology, 2013, 83 (2), pp.504-514. ⟨10.1111/1574-6941.12011⟩ Journal articles hal-02648977v1
	Modification of activities of the ruminal ecosystem and its bacterial and protozoan composition during repeated dietary changes in cows Valérie Monteils , Mikael Rey , Mathieu Silberberg , Laurent L. Cauquil , Sylvie Combes Journal of Animal Science, 2012, 90 (12), pp.4431-4440. ⟨10.2527/jas.2011-4321⟩ Journal articles hal-02642559v1
	Live yeast stability in rabbit digestive tract : Consequences on the caecal ecosystem, digestion, growth and digestive health Moussa Kimse , Corine Bayourthe , Valérie Monteils , Laurence Fortun-Lamothe , Laurent L. Cauquil Animal Feed Science and Technology, 2012, 173 (3-4), pp.235-243. ⟨10.1016/j.anifeedsci.2012.01.012⟩ Journal articles hal-02650603v1
	Analyse comparée des écosystèmes digestifs du rumen de la vache et du caecum du lapin Rory Michelland , Sylvie Combes , Valérie Monteils , Corine Bayourthe , Laurent L. Cauquil INRA Productions Animales, 2012, 25 (5), pp.395-406 Journal articles hal-02642370v1
	Changes over time in the bacterial communities associated with fluid and food particles and the ruminal parameters in the bovine rumen before and after a dietary change Rory Michelland , Valérie Monteils , Sylvie Combes , Laurent L. Cauquil , Thierry Gidenne Canadian Journal of Microbiology, 2011, 57 (8), pp.629-637. ⟨10.1139/W11-053⟩ Journal articles hal-02647485v1
	Starch and oil in the donor cow diet and starch in substrate differently affect the in vitro ruminal biohydrogenation of linoleic and linolenic acids Asma Zened , Annabelle Troegeler-Meynadier , Marie-Claude Nicot , Sylvie Combes , Laurent L. Cauquil Journal of Dairy Science, 2011, 94 (11), pp.5634-5645. ⟨10.3168/jds.2011-4491⟩ Journal articles hal-02652174v1
	Postnatal development of the rabbit caecal microbiota composition and activity Sylvie Combes , Rory Michelland , Valérie Monteils , Laurent L. Cauquil , Vincent Soulié FEMS Microbiology Ecology, 2011, 77 (3), pp.680-689. ⟨10.1111/j.1574-6941.2011.01148.x⟩ Journal articles hal-02647613v1
	Effects of stocking density on the growth performance and digestive microbiota of broiler chickens Sarah S. Guardia , Barbara B. Konsak , Sylvie Combes , Florence F. Levenez , Laurent L. Cauquil Poultry Science, 2011, 90 (9), pp.1878-1889. ⟨10.3382/ps.2010-01311⟩ Journal articles hal-01000465v1
	Rapid adaptation of the bacterial community in the growing rabbit caecum after a change in dietary fibre supply Rory Michelland , Sylvie Combes , Valérie Monteils , Laurent L. Cauquil , Thierry Gidenne Animal, 2011, 5 (11), pp.1761-1768. ⟨10.1017/S1751731111001005⟩ Journal articles hal-02650069v1
	Random changes in the heifer rumen in bacterial community structure, physico-chemical and fermentation parameters, and in vitro fiber degradation Valérie Monteils , Mikael Rey , Laurent L. Cauquil , Annabelle Troegeler-Meynadier , Mathieu Silberberg Livestock Science, 2011, 141 (2-3), pp.104-112. ⟨10.1016/J.LIVSCI.2011.05.008⟩ Journal articles hal-02645940v1
	Molecular analysis of the bacterial community in digestive tract of rabbit R. J. Michelland , Sylvie Combes , Valérie Monteils , Laurent L. Cauquil , Thierry Gidenne Anaerobe, 2010, 16 (2), pp.61-65. ⟨10.1016/j.anaerobe.2009.05.002⟩ Journal articles hal-02658284v1
	Influence of cage or pen housing on carcass traits and meat quality of rabbit Sylvie Combes , Gilbert Postollec , Laurent L. Cauquil , Thierry Gidenne Animal, 2010, 4, pp.295-302. ⟨10.1017/S1751731109991030⟩ Journal articles hal-02662629v1
	Comparison of the archaeal community in the fermentative compartment and faeces of the cow and the rabbit Rory Julien Michelland , Valérie Monteils , Sylvie Combes , Laurent L. Cauquil , Thierry Gidenne Anaerobe, 2010, 16 (4), pp.396-401. ⟨10.1016/j.anaerobe.2010.04.004⟩ Journal articles hal-02665214v1
	Temperature and duration of heating of sunflower oil affect ruminal biohydrogenation of linoleic acid in vitro Florence Privé , Sylvie Combes , Laurent L. Cauquil , Yves Farizon , Francis Enjalbert Journal of Dairy Science, 2010, 93 (2), pp.711-722. ⟨10.3168/jds.2009-2534⟩ Journal articles hal-02655429v1
	Spatial and temporal variations of the bacterial community in the bovine digestive tract R. J. Michelland , Valérie Monteils , Asma Zened , Sylvie Combes , Laurent L. Cauquil Journal of Applied Microbiology, 2009, 107, pp.1642-1650. ⟨10.1111/j.1365-2672.2009.04346.x⟩ Journal articles hal-02655667v1
	Potential core species and satellite species in the bacterial community within the rabbit caecum Valérie Monteils , Laurent L. Cauquil , Sylvie Combes , Jean-Jacques Godon , Thierry Gidenne FEMS Microbiology Ecology, 2008, 66 (3), pp.620-629. ⟨10.1111/j.1574-6941.2008.00611.x⟩ Journal articles hal-02667528v1
	Relationships between sensory and physicochemical measurements in meat of rabbit from three different breeding systems using canonical correlation analysis Sylvie Combes , Ignacio González , Sébastien Dejean , Alain Baccini , Nathalie Jehl Meat Science, 2008, 80 (3), pp.835-841. ⟨10.1016/j.meatsci.2008.03.033⟩ Journal articles hal-00660479v1
	Ability of physico-chemical measurements to discriminate rabbit meat from three different productive processes Sylvie Combes , Catherine Larzul , Nathalie Jehl , Laurent L. Cauquil , Beatrice Gabinaud Journal of the Science of Food and Agriculture, 2007, 87, pp.2302-2309. ⟨10.1002/jsfa.2988⟩ Journal articles hal-02661141v1
	La luzerne déshydratée: Une source d'acides gras oméga-3 pour le lapin Sylvie Combes , Laurent L. Cauquil Cuniculture Magazine, 2006, 33, pp.71-77 Journal articles hal-02657823v1
	Viande de lapin et oméga 3: Une alimentation riche en luzerne permet d'enrichir la viande des lapins en oméga 3 Sylvie Combes , Laurent L. Cauquil La revue française de la recherche en viandes et produits carnés, 2006, 25 (2), pp.31-35 Journal articles hal-02653356v1

	Structure-dependent degradation of milk oligosaccharides by newly isolated intestinal commensal bacterial strains from suckling piglets and rabbits Mathilde Rumeau , Sead Chadi , Frederic Pepke , Martin Beaumont , Laurent Cauquil International Human Microbiome Consortium Congress (IHMC), Jun 2024, Rome, Italy Conference poster hal-04666812v1
	Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote. Maria Bernard , Olivier Rué , Malo Le Boulch , Jean Mainguy , Laurent Cauquil DefisPHASE 2019, 2019, Rennes, France Conference poster hal-03851900v1
	Individual sPLS on ruminal bacterial community of 2 lambs responding differently to a high starch diet to discriminate potential clusters producing trans10-18:1 and trans11-18:1 fatty acids Annabelle Meynadier , Laurent Cauquil , Francis Enjalbert , Monica Costa , Susana P.Alves 10. International Symposium of the Nutrition of Herbivores, Sep 2018, Clermont-Ferrand, France. Cambridge Universtiy Press, Advances in Animal Biosciences, 9 (3), p.381, 2018, Proceedings of the 10 th International Symposium on the Nutrition of Herbivores (ISNH) Conference poster hal-02872079v1
	FROGS : Find Rapidly OTUs with Galaxy Solution Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics Conference poster hal-01886389v1
	How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities? Lucas Auer , Laurent Cauquil , Stephane Chaillou , Céline Delbes , Eric Dugat-Bony JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015 Conference poster hal-01195512v1
	Implantation du microbiote et mise en place des fonctions du rumen chez le veau de race laitière. Mikael Rey , Francis Enjalbert , Sylvie Combes , Christine Julien , Laurent L. Cauquil 5. Journées d'Animation Scientifique du département Phase (JAS Phase 2013), Oct 2013, Paris, France. 2013 Conference poster hal-02809301v1
	Impact de la densité d'élevage sur les performances de croissance et l’équilibre du microbiote digestif du poulet de chair Sarah S. Guardia , Barbara B. Konsak , Sylvie Combes , Florence F. Levenez , Laurent L. Cauquil 4. Journées d'Animation Scientifique du département Phase (JAS Phase 2012), Jan 2012, Rennes, France. 2012 Conference poster hal-02810605v1
	Study of the effect of Live Yeast Saccharomyces cerevisiae (CNCM I-4407) on ruminal bacterial community in lactating dairy cows using 454 GS FLX pyrosequencing Christine Julien , Laurent L. Cauquil , Sylvie Combes , Olivier O. Bouchez , Jean-Philippe Marden 8.INRA-Rowett Symposium on Gut Microbiology, Jun 2012, Clermont-Ferrand, France. , 187 p., 2012, 8th INRA-Rowett Symposium on Gut Microbiology. Gut Microbiota: friend or foe ? Conference poster hal-02747665v1
	Etude par pyroséquençage haut débit (454) de l'implantation des bactéries au niveau du rumen du veau laitier, de sa naissance au sevrage Mikael Rey , Francis Enjalbert , Laurent L. Cauquil , Sylvie Combes , Valérie Monteils Journée Scientifique SEVAB, Oct 2011, Toulouse, France. pp.1, 2011 Conference poster hal-02805484v1
	The ruminal level of trans-10 fatty acids of dairy cows is linked to the composition of bacterial community Asma Zened , Sylvie Combes , Laurent L. Cauquil , Jérôme J. Mariette , Chloé Rousseau 4. Congress of European Microbiologists, FEMS, Jun 2011, Genève, Switzerland. 1p, 2011 Conference poster hal-02806622v1
	Ruminal bacterial community change in response to diet-induced variation of ruminal trans-10 fatty acids Asma Zened , Sylvie Combes , Laurent L. Cauquil , Francis Enjalbert , Annabelle Troegeler-Meynadier 4. Congress European Microbiologists, FEMS, Jun 2011, Genève, Switzerland. 1p, 2011 Conference poster hal-02809835v1
	From high throughput 454 GS FLX data analysis process of 16S RNA gene sequences using barcoding to bacterial community exploration Laurent Cauquil , Jérôme Mariette , Christine Rousseau , Asma Zened , Francis Enjalbert 4th Congress of European Microbiologists, Jun 2011, Genève, Switzerland. pp.0, 2011 Conference poster hal-04041509v1
	Effect of cow diet on the ruminal microflora and its in vitro fatty acid production Annabelle Troegeler-Meynadier , Clara Palagiano , Valérie Monteils , Laurent Cauquil , Francis Enjalbert 6th INRA-RRI Symposium, Jun 2008, Clermont-Ferrand, France. pp.0, 2008 Conference poster hal-04044769v1

	ETUDE DE LA RESILIENCE DE L'HOLOBIONTE SUITE A UNE RUPTURE DE TRANSMISSION SYMBIOTIQUE DANS 2 LIGNEES DE LAPINS SELECTIONNEES SUR L'EFFICACITE ALIMENTAIRE Marie Renevey , Sylvie Combes , Laurent Cauquil , Patrick Aymard , Virginie Helies Journées de la Recherche Cunicole, ITAVI; INRAE, Mar 2023, Le Mans (72000), France. pp.137-140, ⟨10.15454/1.5572370921303193E12)⟩ Conference papers hal-04646246v1
	Can microbial data improve prediction of breeding values of efficiency traits in pigs fed conventional or fiber diets? Vanille Déru , Franscesco Tiezzi , Céline Carillier-Jacquin , Benoit Blanchet , Laurent Cauquil 12th World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands Conference papers hal-03945907v1
	Both quantitative and energetic intake level affect caecal microbiota composition and activity in the growing rabbit Christelle Knudsen , Thierry Gidenne , Laurent Cauquil , Géraldine Pascal , Christophe Briens 12th World Rabbit Congress, Nov 2021, Nantes, France Conference papers hal-03649231v1
	Microbiome and genetic contribution to the phenotypic variation of digestive efficiency in pig Vanille Déru , Francesco Tiezzi , Céline Carillier-Jacquin , Benoit Blanchet , Laurent Cauquil 72. Annual meeting of the european federation of animal science (EAAP), EAAP, Aug 2021, Davos, Switzerland. pp.571 Conference papers hal-03360125v1
	L’ingestion d’aliments solides au début de la vie induit la co maturation du microbiote et de la barrière intestinale Martin Beaumont , Paës Charlotte , Cauquil Laurent , Aymard Patrick , Barilly Céline CECED 2019, Mar 2019, Toulouse, France Conference papers hal-02914649v1
	Gut microbiota of rabbit females according to the annual reproductive success and age Davi Savietto , Charlotte Paes , Manon Despeyroux , Céline Barilly , Laurent Cauquil 44. Symposium de Cunicultura de ASESCU, Jun 2019, Aranda del Duero, España. 108 p., ⟨10.4995/wrs.2019.11963⟩ Conference papers hal-02734802v1
	Early life solid food ingestion remodels the gut microbiota compostion and increases the production of protective bacterial metabolites Martin Beaumont , Charlotte Paes , Eloïse Mussard , Laurent Cauquil , Patrick Aymard digestive disease week 2019, May 2019, San diego, United States Conference papers hal-02914647v1
	Stimuler l'ingestion d'aliments solides au début de la vie : une stratégie prometteuse pour piloter la co-maturation du microbiote et de la muqueuse intestinale Martin Beaumont , Charlotte Paes , Eloïse Mussard , Laurence Lamothe , Thierry Gidenne Séminaire Défis Scientifiques, Département de Physiologie Animale et Systèmes d’Elevage, Nov 2019, Rennes, France Conference papers hal-02884240v1
	Microbiota as a tool to promote spontaneous liver steatosis in Greylag geese: promising results Christelle Knudsen , Maxime Even , Julien Arroyo , Sylvie Combes , Laurent Cauquil 69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia Conference papers hal-01901325v1
	Exploration de l’implication du système immunitaire dans le lien entre les pratiques d’élevage et la santé des lapereaux Laurent L. Cauquil , Barbara Schmaltz Panneau , Thierry Gidenne , Laurence Liaubet , Yannick Lippi Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2016, Tours, France. 115 p Conference papers hal-02744215v1
	Evaluation d’un système d’élevage alternatif à l’antibiothérapie sur la mise en place du système immunitaire chez le lapin. Thierry Gidenne , Sylvie Combes , Laurent Cauquil , Laurence Liaubet , Yannick Lippi Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France Conference papers hal-02794276v1
	Effect of feeding strategy on the maturation of ceacal microbiota in young rabbits Tehya Read , Laurence Fortun-Lamothe , Thierry Gidenne , N. Destombes , Laurent Cauquil 11. World Rabbit Congress, Jun 2016, Qingdao, China. 417 p Conference papers hal-02739131v1
	Implantation du microbiote intestinal dans l'iléon et les ceca des canetons Barbarie, Pékin et Mulard par séquençage miseQ Mickael Rey , Karine Ricaud , Marie-Dominique M.-D. Bernadet , Géraldine Pascal , Sylvie Combes 11. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Mar 2015, Tours, France Conference papers hal-02739751v1
	Modulation de la composition l'écosystème digestif caecal du lapereau par voie alimentaire et relation avec son fonctionnement Vincent Jacquier , Sylvie Combes , Géraldine Pascal , Laurent L. Cauquil , Beatrice Gabinaud 16. Journées de la Recherche Cunicole, Nov 2015, Le Mans, France. 264 p Conference papers hal-02742208v1
	Find Rapidly OTU with Galaxy Solution Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France Conference papers hal-01535378v1
	Coprophagous behavior of rabbit pups affects dynamic implantation of microbiota and health status Sylvie Combes , Thierry Gidenne , Laurent Cauquil , Olivier Bouchez , Laurence Lamothe 64. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. 665 p., ⟨10.3920/978-90-8686-782-0⟩ Conference papers hal-01132764v1
	Sélection divergente pour les troubles digestifs dans deux lignées commerciales : Réponse de lapins "sensibles" ou "résistants" à une inoculation expérimentale de Escherichia Coli 0103 Hervé Garreau , Sophie Brard , Jacques Hurtaud , Edouard Guitton , Laurent L. Cauquil 15. Journées de la Recherche Cunicole, Nov 2013, Le Mans, France Conference papers hal-02748551v1
	Comportement d'ingestion de fèces dures maternelles par les lapereaux au nid. 2. Influence sur l'implantation du microbiote caecal et sur la survie des lapereaux Sylvie Combes , Thierry Gidenne , Laurent L. Cauquil , Elodie Balmisse Balmisse , Patrick Aymard 15. Journées de la Recherche Cunicole, 2013, Le Mans, France Conference papers hal-02750256v1
	Réponse du microbiote commensal de lapins EOPS à une reproduction expérimentale de l'EEL par l'inoculum TEC4 : résultats préliminaires de pyroséquençage 454 Sylvie Combes , Dominique Licois , Laurent L. Cauquil , Nadia Abed , Laurence Fortun-Lamothe 15. Journées de la Recherche Cunicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). Paris, FRA., Nov 2013, Le Mans, France. 244 p Conference papers hal-02748739v1
	Conception d'un système d'élevage cunicole alternatif à l'antibiothérapie par orientation précoce du microbiote caecal Sylvie Combes , Thierry Gidenne , Laurent L. Cauquil , Laurence Fortun-Lamothe 5. Journées d'Animation Scientifique du département Phase (JAS Phase 2013), Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Oct 2013, Paris, France. 19 diapositives Conference papers hal-02808836v1
	Conception d'un système d'élevage cunicole alternatif à l'antibiothérapie par orientation précoce du microbiote Sylvie Combes , Thierry Gidenne , Laurent Cauquil , Laurence Lamothe Journées d’Animation Scientifique du Département PHASE, Oct 2013, Paris, France Conference papers hal-01131080v1
	Establishment of archaea in the rumen of dairy calves from birth to weaning using 454 FLX pyrosequencing Mikael Rey , Francis Enjalbert , Laurent L. Cauquil , Olivier O. Bouchez , Sylvie Combes 8. INRA-Rowett Symposium: Gut Microbiota: friend or foe?, Jun 2012, Clermont-Ferrand, France. pp.187 Conference papers hal-02747503v1
	Impact of dietary fiber deficiency on the caecal ecosystem of the young rabbit. Modulation by yeast probiotics Moussa Kimse , Sylvie Combes , Laurent L. Cauquil , Laurence Fortun-Lamothe , Corine Bayourthe 10th World Rabbit Congress, 2012, Sharm El-Sheikh, Egypt Conference papers hal-02747346v1
	Divergent selection for digestive disorders in two commercial rabbit lines : response of crossbred young rabbits to an experimental inoculation of Echerichia coli 0103. Hervé Garreau , Sophie Brard , J. Hurtaud , Edouard Guitton , Laurent L. Cauquil 10. World Rabbit Congress, Sep 2012, Sharm El-Sheikh, Egypt Conference papers hal-02745187v1
	Piloter l'écosystème digestif du lapin : pourquoi, quand et comment ? Sylvie Combes , Laurence Fortun-Lamothe , Laurent L. Cauquil , Thierry Gidenne 14. Journées de la Recherche Cunicole, Nov 2011, Le Mans, France Conference papers hal-02748786v1
	Evolution of bacterial diversity in the rumen in dairy calves from birth to weaning using a high throughput 454 GS FLX pyrosequencing Mickael Rey , Francis Enjalbert , Laurent Cauquil , Sylvie Combes , Valérie Monteils 8th International Symposium on the Nutrition of Herbivores, Sep 2011, Aberystwyth, United Kingdom. pp.252 Conference papers hal-04041512v1
	Caractérisation physiopathologique et microbiologique d'entéropathie non spécifique chez le lapin en croissance - premiers résultats Moussa Kimse , Sylvie Combes , Laurence Fortun-Lamothe , Laurent L. Cauquil , Valérie Monteils 14. Journées de la Recherche Cunicole, Nov 2011, Le Mans, France Conference papers hal-02746099v1
	Réponse digestive du lapereau à une inoculation expérimentale colibacillaire (O128:C6) en fonction du niveau d'ingestion Mélanie Martignon , Dominique Licois , Laurent L. Cauquil , M. Amelot , Sylvie Combes 14. Journées de la Recherche Cunicole, Nov 2011, Le Mans, France Conference papers hal-02746773v1
	Reducing conditions varied with diets and bacterial communities in the rumen on dairy cows Christine Julien , Jean-Philippe Marden , E. Auclair , Laurent L. Cauquil , - Moncoulon Gut Microbiology, 7. Joint Symposium, Jun 2010, Aberdeen, United Kingdom. pp.1 Conference papers hal-02817627v1
	Implantation du microbiote cæcal chez le lapin : structure et diversité de la communauté bactérienne. Sylvie Combes , Rory Michelland , Valérie Monteils , Laurent L. Cauquil , Vincent Soulié Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase), Oct 2010, Tours, France. 12 diapo Conference papers hal-02822872v1
	Conséquences de la présence d'une flore exogène sur l'écosystème digestif : approche comparée entre le cæcum et le rumen Thierry Gidenne , Corine Bayourthe , Moussa Kimse , Valérie Monteils , Laurent L. Cauquil Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase), Oct 2010, Tours, France Conference papers hal-02816076v1
	Approche quantitative de l'étude du microbiote digestif : étude méthodologique comparée d'une quantification directe (DAPI) ou de la PCR en temps réel Sylvie Combes , Laurent L. Cauquil , Beatrice Gabinaud , Thierry Gidenne Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase), Oct 2010, Tours, France Conference papers hal-02823914v1
	Mesure in vitro de l'activité de la communauté bactérienne ruminale Annabelle Troegeler-Meynadier , Valérie Monteils , Sylvie Combes , Laurent Cauquil , Marie-Luce Chemit 3èmes Journées d'Animation Scientifique INRA-PHASE, Oct 2009, Tours, France. pp.0 Conference papers hal-04044242v1
	Adaptation rapide de la communauté bactérienne cæcale du lapin à une réduction du taux de fibres alimentaires Rory Michelland , Sylvie Combes , Valérie Monteils , Laurent L. Cauquil , Thierry Gidenne 3. Journées d’Animation Scientifique du Département de Physiologie Animale et Systèmes d’Elevage, Oct 2009, Tours, France Conference papers hal-02756861v1
	Évolution spontanée de la communauté bactérienne ruminale selon la nature de la ration. Valérie Monteils , Laurent L. Cauquil , Sylvie Combes 3. Journées d’Animation Scientifique du Département de Physiologie Animale et Systèmes d’Elevage, Oct 2009, Tours, France Conference papers hal-02752068v1
	Incidence d'une déficience en fibres alimentaires sur l'écosystème cæcal du lapereau. Modulation par l'apport de levures probiotiques. Moussa Kimse , Sylvie Combes , Laurent L. Cauquil , Corine Bayourthe , Valérie Monteils 13. Journées de la Recherche Cunicole, Nov 2009, Le Mans, France Conference papers hal-02753400v1
	Réponse de l'écosystème digestif de lapins EOPS à une reproduction expérimentale de l'EEL par l'inoculum standard TEC4 Sylvie Combes , Flora Nice , Dominique Licois , Laurent L. Cauquil , Laurence Fortun-Lamothe 13. Journées de la Recherche Cunicole, Nov 2009, Le Mans, France Conference papers hal-02757785v1
	Comparative study of archaeal community in the digestive ecosystem of the rabbit and cow gut reveals strong host species and compartment effects Rory Michelland , Sylvie Combes , Laurent L. Cauquil , Thierry Gidenne , Valérie Monteils 6. INRA-RRI Symposium Gut Microbiome Functionality, interaction with host and impact on the environment, Jun 2008, Clermont-Ferrand, France Conference papers hal-02750953v1
	Analyse canonique régularisée pour l'étude de relations entre mesures sensorielles et instrumentales de la qualité de la viande de lapin Sébastien Dejean , Sylvie Combes , Ignacio González , Catherine Larzul , Laurent Cauquil 10. Journées Européennes Agro-Industrie et Méthodes Statistiques, Jan 2008, Louvain-La-Neuve, Belgique Conference papers hal-01193502v1
	Characterization of bacterial communities in caecum, hard and soft feces of rabbit using 16S rRNA genes capillary electrophoresis single-strand conformation polymorphism (CE-SSCP). Rory Michelland , Sylvie Combes , Laurent L. Cauquil , Thierry Gidenne , Valérie Monteils 9th World Rabbit Congress, Jun 2008, Vérone, Italy Conference papers hal-02756236v1
	Impact of an exclusive milk vs. milk and dry feed intake till weaning on intake, growth, and on the caecal biodiversity and fibrolytic activity of the young rabbit. Sylvie Combes , Laurent L. Cauquil , Thierry Gidenne 9th World Rabbit Congress, Jun 2008, Vérone, Italy Conference papers hal-02754040v1
	I. Evaluation de la qualité des carcasses de trois lots de lapins commerciaux (standard, certifié et Label) en abattoir industriel par 41 mesures physico-chimiques simples, rapides et peu coûteuses Sylvie Combes , Catherine Larzul , Laurent L. Cauquil , M.C. Clochard , Beatrice Gabinaud 12. Journées de la Recherche Cunicole, Nov 2007, Le Mans, France Conference papers hal-02755855v1
	Inventaire des bactéries caecales du lapin par clonage aléatoire : résultats et perspectives Laurent L. Cauquil , Valérie Monteils , Jean-Jacques Godon , Geraldine Mastin , Sylvie Combes 12. Journées de la Recherche Cunicole, Nov 2007, Le Mans, France Conference papers hal-02752881v1
	Caractérisation comparée des communautés bactériennes du contenu cæcal, des cæcotrophes et des fæces dures chez le lapin adulte par CE-SSCP des gènes codant pour l'ARN16S Rory Michelland , Sylvie Combes , Laurent L. Cauquil , Thierry Gidenne , Valérie Monteils 12. Journées de la Recherche Cunicole, Nov 2007, Le Mans, France Conference papers hal-02750978v1
	Caractérisation comparée des communautés bactériennes du contenu cæcal, des cæcotrophes et des fæces dures chez le lapin par PCR-SSCP Rory Michelland , Sylvie Combes , Laurent L. Cauquil , Valérie Monteils , Thierry Gidenne 2. Journées d'Animation Scientifique du Département Physiologie Animale et Système d'Elevage, Oct 2007, Tours, France Conference papers hal-02752481v1
	Comparative molecular inventory of two microbial digestive ecosystems : the rabbit caecum and the dairy cow rumen Laurent L. Cauquil , Sylvie Combes , Valérie Monteils , Jean-Jacques Godon , Thierry Gidenne 1. Reunion cientifica : Avances Moetodologicos en el Estudio de la Microbiologia Digestiva, May 2007, Saragosse, Spain. 2 p Conference papers hal-02812706v1
	II. Mise au point d'un système de discrimination simple et rapide de 3 lots commerciaux de lapins : standard CCP et Label Sylvie Combes , Catherine Larzul , Laurent L. Cauquil , M.C. Clochard , Beatrice Gabinaud 12. Journées de la Recherche Cunicole, Nov 2007, Le Mans, France Conference papers hal-02753783v1
	Caractérisation des communautés bactériennes dans le rumen et les feces de bovins adultes par PCR-SSCP Rory Michelland , Valérie Monteils , Asma Zened , Sylvie Combes , Laurent L. Cauquil 3. Colloque d'Ecologie Microbienne (AFEM), Oct 2007, La Grande Motte, France. 1 p Conference papers hal-02817719v1
	Behaviour of live yeast Biosaf® Sc 47 during digestive transit in dairy cows Valérie Monteils , Laurent L. Cauquil , Etienne Auclair , Corine Bayourthe 5. Joint RRI-INRA Gastrointestinal Tract Microbiology Symposium, Jun 2006, Aberdeen, United Kingdom Conference papers hal-02757135v1
	La Luzerne : un atout pour une viande enrichie en Oméga3 Sylvie Combes , Laurent L. Cauquil Journée Nationale sur l'élevage du lapin de chair, Nov 2006, Pacé, France Conference papers hal-02750904v1
	Inventaire moleculaire de l'écosystème caecal du lapin : résultats préliminaires Laurent L. Cauquil , Valérie Monteils , Jean-Jacques Godon , Geraldine Mastin , Sylvie Combes Journées de Restitution du Département PHASE, Sep 2006, Tours, France. n.p Conference papers hal-02813148v1
	Aptitude des méthodes physico-chimiques à décrire les caractéristiques sensorielles perçues par un jury entraîné à la dégustation de la viande de lapin Sylvie Combes , Catherine Larzul , Nathalie Jehl , Herve H. Juin , M.C. Clochard 11èmes Journées de la Recherche Cunicole, Nov 2005, Paris, France Conference papers hal-02763342v1
	Comparaison lapin "Bio"/lapin standard : Analyses sensorielles et tendreté mécanique de la viande Sylvie Combes , F. Lebas , Herve Juin , Lionel Lebreton , T. Martin 10. Journées de la Recherche Cunicole, Nov 2003, Paris, France Conference papers hal-02759820v1
	Influence de trois modes de logement des lapins sur la qualité de la viande Sylvie Combes , G. Postollec , N. Jehl , Laurent Cauquil , B. Darche 10. Journées de la Recherche Cunicole, Nov 2003, Paris, France Conference papers hal-02764004v1
	Comparaison lapin "Bio"/lapin standard : Caractéristiques des carcasses et composition chimique de 6 muscles de la cuisse Sylvie Combes , F. Lebas , Lionel Lebreton , T. Martin , N. Jehl 10. Journées de la Recherche Cunicole, Nov 2003, Paris, France Conference papers hal-02760716v1
	Effect of selection on body size at fixed age on muscle characteristics in rabbit Florence Gondret , Catherine Larzul , Sylvie Combes , Laurent L. Cauquil , B. Darche 7. World congress on Genetics Applied to Livestock Production, Aug 2002, Montpellier, France Conference papers hal-02762061v1
	Caractérisation physico-chimique et rhéologique de la viande de lapin. Application à la comparaison de lapins label et standard Laurent L. Cauquil , Sylvie Combes , Nathalie Jehl , Beatrice Darche , François Lebas 9. Journées de la Recherche Cunicole, Nov 2001, Paris, France Conference papers hal-02763566v1
	Tendreté mécanique du muscle longissimus dorsi de lapin : étude méthodologique Sylvie Combes , Catherine Larzul , Florence Gondret , Laurent L. Cauquil , B. Darche 9. Journées de la Recherche Cunicole en France, 2001, Paris, France Conference papers hal-02763294v1

	Tutoriel du package purrr du logiciel R Laurent Cauquil 2024 Scientific blog post hal-04432724v1
	Produire un tableau de résultats de modèles linéaires avec les packages purrr et flextable Laurent Cauquil 2024 Scientific blog post hal-04432702v1
	Guidelines pour modèles mixtes Laurent Cauquil 2024 Scientific blog post hal-04432669v1
	Code styling avec R Laurent Cauquil 2024 Scientific blog post hal-04432688v1
	Croissance bacterienne: automatisation du calcul des métriques et des graphiques des courbes de croissance sous R Laurent Cauquil 2024 Scientific blog post hal-04432756v1
	Rajouter des intervalles de confiance avec ggplot Laurent Cauquil 2024 Scientific blog post hal-04603540v1
	Analyse d'une requête bibliométrique sous R Laurent Cauquil 2024 Scientific blog post hal-04432739v1

	Introduction au logiciel R Laurent Cauquil Licence. (Introduction au logiciel R), 2019 Lectures hal-02789980v1
	Formation FROGS juillet 2019 Géraldine Pascal , Laurent Cauquil Master. (Trainingon Galaxy : Metagenomics / ITS analysisin FROGS ? / Trainingon Galaxy: Statistics to explore metagenomics), 2019 Lectures hal-02790029v1
	Février_2017_Formation Métagénomique avec le logiciel FROGS Géraldine Pascal , Laurent Cauquil , Maria Bernard 2017 Lectures hal-02785427v1
	FROGS Training on Galaxy : Metagenomics November 2017 Frédéric Escudié , Lucas Auer , Maria Bernard , Laurent Cauquil , Sarah Maman Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p Lectures hal-02791696v1
	FROGS Training on Galaxy : Statistics to Explore Metagenomics Maria Bernard , Géraldine Pascal , Mahendra Mariadassou , Laurent Cauquil , Stephane Chaillou Training on Galaxy : Statistics to Explore Metagenomics - FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 116 p Lectures hal-02788316v1
	Le microbiote digestif : un acteur de la préservation de notre santé Sylvie Combes , Laurent Cauquil Master. Bio-Ingénierie : santé, aliments (BING) (microbiote digestif : un acteur de la préservation de notre santé), 2016, 107 p Lectures hal-02792977v1

	FROGS : Find Rapidly OTU with Galaxy Solution Frédéric Escudie , Lucas Auer , Maria Bernard , Mahendra Mariadassou , Laurent Cauquil 2017 Other publications hal-01886442v1

Laurent Cauquil

Publications

The potential of microbiota information to better predict efficiency traits in growing pigs fed a conventional and a high-fiber diet

Coprophagia in early life tunes expression of immune genes after weaning in rabbit ileum

Milk replacer feeding once or twice a day did not change the ruminal metabolomic profile and the microbial diversity of dairy calves from birth to weaning

Effect of dietary supplementation with algae extracts on growth performance and caecal microbiota of broiler chickens

A multi-omics dataset of the response to early plant polysaccharide ingestion in rabbits

The Early Life Microbiota Is Not a Major Factor Underlying the Susceptibility to Postweaning Diarrhea in Piglets

Integrating data from spontaneous and induced trans-10 shift of ruminal biohydrogenation reveals discriminant bacterial community changes at the OTU level

Developmental Stage, Solid Food Introduction and Suckling Cessation Differentially Influence the Co-maturation of the Gut Microbiota and Intestinal Epithelium in Rabbits

Gut microbiota and host genetics contribute to the phenotypic variation of digestive and feed efficiency traits in growing pigs fed a conventional and a high fiber diet

Genetic relationships between efficiency traits and gut microbiota traits in growing pigs fed a conventional or a high fiber diet

Microbiability and microbiome-wide association analyses of feed efficiency and performance traits in pigs

Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions

The phenotype of the gut region is more stably retained than developmental stage in piglet intestinal organoids

Impact of feed restriction and fragmented feed distribution on performance, intake behaviour and digestion of the growing rabbit

The intestinal microbial composition in Greylag geese differs with steatosis induction mode: spontaneous or induced by overfeeding

Bacterial Consumption of T4 Phages

Gut Microbiota-Derived Metabolite Signature in Suckling and Weaned Piglets

Effect of Litter Treatment on Campylobacter jejuni in Broilers and on Cecal Microbiota

Early inoculation of microbial suspension in suckling piglets affects the transmission of maternal microbiota and the associated antibiotic resistance genes

Dietary composition and yeast-microalgae combination supplementation modulate the microbial ecosystem in the caecum, colon and faeces of horses

Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard

Gut microbiota derived metabolites contribute to intestinal barrier maturation at the suckling-to-weaning transition

Variability of the Ability of Complex Microbial Communities to Exclude Microbes Carrying Antibiotic Resistance Genes in Rabbits

Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits

FROGS: Find, Rapidly, OTUs with Galaxy Solution

Fumonisin-Exposure Impairs Age-Related Ecological Succession of Bacterial Species in Weaned Pig Gut Microbiota

Impact of feed restriction and housing hygiene conditions on specific and inflammatory immune response, the cecal bacterial community and the survival of young rabbits

Interaction between Live Yeast and Dietary Rumen Degradable Protein Level: Effects on Diet Utilization in Early-Lactating Dairy Cows

Coprophagous behavior of rabbit pups affects implantation of cecal microbiota and health status

Acaricidal activity of five essential oils of Ocimum species on Rhipicephalus (Boophilus) microplus larvae.

Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential over three periods

Lactobacillus sakei modulates mule duck microbiota in ileum and ceca during overfeeding

Overfeeding and genetics affect the composition of intestinal microbiota in Anas platyrhynchos (Pekin) and Cairina moschata (Muscovy) ducks

OligoSpecificitySystem: global matching efficiency calculation of oligonucleotide sets taking into account degeneracy and mismatch possibilities

Engineering the rabbit digestive ecosystem to improve digestive health and efficacy

Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets

Modification of activities of the ruminal ecosystem and its bacterial and protozoan composition during repeated dietary changes in cows

Live yeast stability in rabbit digestive tract : Consequences on the caecal ecosystem, digestion, growth and digestive health

Analyse comparée des écosystèmes digestifs du rumen de la vache et du caecum du lapin

Changes over time in the bacterial communities associated with fluid and food particles and the ruminal parameters in the bovine rumen before and after a dietary change

Starch and oil in the donor cow diet and starch in substrate differently affect the in vitro ruminal biohydrogenation of linoleic and linolenic acids

Postnatal development of the rabbit caecal microbiota composition and activity

Effects of stocking density on the growth performance and digestive microbiota of broiler chickens

Rapid adaptation of the bacterial community in the growing rabbit caecum after a change in dietary fibre supply

Random changes in the heifer rumen in bacterial community structure, physico-chemical and fermentation parameters, and in vitro fiber degradation

Molecular analysis of the bacterial community in digestive tract of rabbit

Influence of cage or pen housing on carcass traits and meat quality of rabbit

Comparison of the archaeal community in the fermentative compartment and faeces of the cow and the rabbit

Temperature and duration of heating of sunflower oil affect ruminal biohydrogenation of linoleic acid in vitro

Spatial and temporal variations of the bacterial community in the bovine digestive tract

Potential core species and satellite species in the bacterial community within the rabbit caecum

Relationships between sensory and physicochemical measurements in meat of rabbit from three different breeding systems using canonical correlation analysis

Ability of physico-chemical measurements to discriminate rabbit meat from three different productive processes

La luzerne déshydratée: Une source d'acides gras oméga-3 pour le lapin

Viande de lapin et oméga 3: Une alimentation riche en luzerne permet d'enrichir la viande des lapins en oméga 3

Structure-dependent degradation of milk oligosaccharides by newly isolated intestinal commensal bacterial strains from suckling piglets and rabbits

Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.

Individual sPLS on ruminal bacterial community of 2 lambs responding differently to a high starch diet to discriminate potential clusters producing trans10-18:1 and trans11-18:1 fatty acids

FROGS : Find Rapidly OTUs with Galaxy Solution

How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?

Implantation du microbiote et mise en place des fonctions du rumen chez le veau de race laitière.

Impact de la densité d'élevage sur les performances de croissance et l’équilibre du microbiote digestif du poulet de chair

Study of the effect of Live Yeast Saccharomyces cerevisiae (CNCM I-4407) on ruminal bacterial community in lactating dairy cows using 454 GS FLX pyrosequencing

Etude par pyroséquençage haut débit (454) de l'implantation des bactéries au niveau du rumen du veau laitier, de sa naissance au sevrage

The ruminal level of trans-10 fatty acids of dairy cows is linked to the composition of bacterial community

Ruminal bacterial community change in response to diet-induced variation of ruminal trans-10 fatty acids

From high throughput 454 GS FLX data analysis process of 16S RNA gene sequences using barcoding to bacterial community exploration

Effect of cow diet on the ruminal microflora and its in vitro fatty acid production

ETUDE DE LA RESILIENCE DE L'HOLOBIONTE SUITE A UNE RUPTURE DE TRANSMISSION SYMBIOTIQUE DANS 2 LIGNEES DE LAPINS SELECTIONNEES SUR L'EFFICACITE ALIMENTAIRE

Can microbial data improve prediction of breeding values of efficiency traits in pigs fed conventional or fiber diets?

Both quantitative and energetic intake level affect caecal microbiota composition and activity in the growing rabbit

Microbiome and genetic contribution to the phenotypic variation of digestive efficiency in pig

L’ingestion d’aliments solides au début de la vie induit la co maturation du microbiote et de la barrière intestinale

Gut microbiota of rabbit females according to the annual reproductive success and age

Early life solid food ingestion remodels the gut microbiota compostion and increases the production of protective bacterial metabolites

Stimuler l'ingestion d'aliments solides au début de la vie : une stratégie prometteuse pour piloter la co-maturation du microbiote et de la muqueuse intestinale

Microbiota as a tool to promote spontaneous liver steatosis in Greylag geese: promising results