Lucie Zinger

62
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Affiliation actuelle
  • Centre de Recherche sur la Biodiversité et l'Environnement (CRBE)
Contact

Présentation

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Publications

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Warming effects on lizard gut microbiome depend on habitat connectivity

Emma Fromm , Lucie Zinger , Félix Pellerin , Lucie Di Gesu , Staffan Jacob et al.
Proceedings of the Royal Society B: Biological Sciences, 2024, 291 (2021), pp.20240220. ⟨10.1098/rspb.2024.0220⟩
Article dans une revue hal-04558931 v1
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Mountain soil multitrophic networks shaped by the interplay between habitat and pedoclimatic conditions

Irene Calderón-Sanou , Marc Ohlmann , Tamara Münkemüller , Lucie Zinger , Mickael Hedde et al.
Soil Biology and Biochemistry, 2024, 190, pp.109282. ⟨10.1016/j.soilbio.2023.109282⟩
Article dans une revue hal-04409236 v1
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Linking satellites to genes with machine learning to estimate phytoplankton community structure from space

Roy El Hourany , Juan Pierella Karlusich , Lucie Zinger , Hubert Loisel , Marina Levy et al.
Ocean Science, 2024, 20 (1), pp.217-239. ⟨10.5194/os-20-217-2024⟩
Article dans une revue hal-04582355 v1

Refocusing the microbial rare biosphere concept through a functional lens

Elena Litchman , Sébastien Villéger , Zinger Lucie , Jean-Christophe Auguet , Wilfried Thuiller et al.
Trends in Ecology & Evolution, 2024, ⟨10.1016/j.tree.2024.06.005⟩
Article dans une revue hal-04666177 v1
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Molecular ecology of microbiomes in the wild: Common pitfalls, methodological advances and future directions

Nicholas M Fountain‐jones , Tatiana Giraud , Lucie Zinger , Holly Bik , Simon Creer et al.
Molecular Ecology, In press, ⟨10.1111/mec.17223⟩
Article dans une revue hal-04313134 v1
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Spatial turnover of fungi and partner choice shape mycorrhizal networks in epiphytic orchids

Rémi Petrolli , Lucie Zinger , Benoît Perez-Lamarque , Géromine Collobert , Chantal Griveau et al.
Journal of Ecology, 2022, 110 (11), pp.2568-2584. ⟨10.1111/1365-2745.13986⟩
Article dans une revue hal-03792570 v1
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Decay of similarity across tropical forest communities: integrating spatial distance with soil nutrients

Guille Peguero , Miquel Ferrín , Jordi Sardans , Erik Verbruggen , Irene Ramírez-Rojas et al.
Ecology, 2022, 103 (2), pp.e03599. ⟨10.1002/ecy.3599⟩
Article dans une revue hal-03411548 v1

Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

Paula Arribas , Carmelo Andújar , Kristine Bohmann , Jeremy Dewaard , Evan Economo et al.
GigaScience, 2022, 11, ⟨10.1093/gigascience/giac065⟩
Article dans une revue hal-03873057 v1
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A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Juan José Pierella Karlusich , Eric Pelletier , Lucie Zinger , Fabien Lombard , Adriana Zingone et al.
Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩
Article dans une revue hal-03559541 v1
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Cascading effects of moth outbreaks on subarctic soil food webs

Irene Calderón-Sanou , Tamara Münkemüller , Lucie Zinger , Heidy Schimann , Nigel Gilles Yoccoz et al.
Scientific Reports, 2021, 11 (1), pp.15054. ⟨10.1038/s41598-021-94227-z⟩
Article dans une revue hal-03346467 v1
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Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments

Julian Donald , Jérôme Murienne , Jérôme Chave , Amaia Iribar , Eliane Louisanna et al.
Global Ecology and Conservation, 2021, 29, pp.e01724. ⟨10.1016/j.gecco.2021.e01724⟩
Article dans une revue hal-03282383 v1

Biodiversity monitoring using environmental DNA

Naiara Rodríguez-Ezpeleta , Lucie Zinger , Andrew Kinziger , Holly Bik , Aurélie Bonin et al.
Molecular Ecology Resources, 2021, 21 (5), pp.1405-1409. ⟨10.1111/1755-0998.13399⟩
Article dans une revue hal-04867368 v1

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

Paula Arribas , Carmelo Andújar , Martin Bidartondo , Kristine Bohmann , Éric Coissac et al.
Molecular Ecology, 2021, 30 (5), pp.1120-1135. ⟨10.1111/mec.15797⟩
Article dans une revue hal-03358499 v1

Disentangling the assembly mechanisms of ant cuticular bacterial communities of two Amazonian ant species sharing a common arboreal nest

Caroline Birer , Corrie Moreau , Niklas Tysklind , Lucie Zinger , Christophe Duplais
Molecular Ecology, 2020, 29 (7), pp.1372-1385. ⟨10.1111/mec.15400⟩
Article dans une revue hal-02936020 v1
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Sharing and reporting benefits from biodiversity research

Emily Marden , Richard Abbott , Frederic Austerlitz , Daniel Ortiz‐barrientos , Regina Baucom et al.
Molecular Ecology, 2020, 30 (5), pp.1103-1107. ⟨10.1111/mec.15702⟩
Article dans une revue hal-02993811 v1
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From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices?

Irene Calderón‐sanou , Tamara Münkemüller , Frédéric Boyer , Lucie Zinger , Wilfried Thuiller
Journal of Biogeography, 2020, 47 (1), pp.193-206. ⟨10.1111/jbi.13681⟩
Article dans une revue hal-02324167 v1
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One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies

Emmanuel Corse , Christelle Tougard , Gaït Archambaud‐suard , Jean‐françois Agnèse , Françoise Messu Mandeng et al.
Ecology and Evolution, 2019, 9 (8), pp.4603-4620. ⟨10.1002/ece3.5063⟩
Article dans une revue hal-02109732 v1
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Environmental and biotic drivers of soil microbial β‐diversity across spatial and phylogenetic scales

Loïc Chalmandrier , Johan Pansu , Lucie Zinger , Frédéric Boyer , Eric Coissac et al.
Ecography, 2019, 42 (12), pp.2144 - 2156. ⟨10.1111/ecog.04492⟩
Article dans une revue hal-03032726 v1

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

Guilhem Sommeria‐klein , Lucie Zinger , Eric Coissac , Amaia Iribar , Heidy Schimann et al.
Molecular Ecology Resources, 2019, ⟨10.1111/1755-0998.13109⟩
Article dans une revue hal-02402988 v1
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Global Trends in Marine Plankton Diversity across Kingdoms of Life

Federico Ibarbalz , Nicolas Henry , Manoela Brandão , Severine Martini , Greta Busseni et al.
Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩
Article dans une revue hal-03094778 v1

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Lucie Zinger , Aurélie Bonin , Inger Alsos , Miklós Bálint , Holly Bik et al.
Molecular Ecology, 2019, 28 (8), pp.1857-1862. ⟨10.1111/mec.15060⟩
Article dans une revue hal-02375694 v1
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Multi‐trophic β‐diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions

Camille Martinez‐almoyna , Wilfried Thuiller , Loïc Chalmandrier , Marc Ohlmann , Arnaud Foulquier et al.
Functional Ecology, 2019, 33 (10), pp.2053-2064. ⟨10.1111/1365-2435.13393⟩
Article dans une revue hal-02276279 v1
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Body size determines soil community assembly in a tropical forest

Lucie Zinger , Pierre Taberlet , Heidy Schimann , Aurélie Bonin , Frédéric Boyer et al.
Molecular Ecology, 2019, 28 (3), pp.528-543. ⟨10.1111/mec.14919⟩
Article dans une revue hal-02079020 v1
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Altered trophic interactions in warming climates: consequences for predator diet breadth and fitness

Elvire Bestion , Andrea Soriano-Redondo , Julien Cucherousset , Staffan Jacob , Joël White et al.
Proceedings of the Royal Society B: Biological Sciences, 2019, 286 (1914), pp.20192227. ⟨10.1098/rspb.2019.2227⟩
Article dans une revue hal-02340138 v1
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Mapping the imprint of biotic interactions on β-diversity

Marc Ohlmann , Florent Mazel , Loïc Chalmandrier , Stéphane Bec , Eric Coissac et al.
Ecology Letters, 2018, 21 (11), pp.1660-1669. ⟨10.1111/ele.13143⟩
Article dans une revue hal-03750500 v1
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Ubiquitous abundance distribution of non-dominant plankton across the global ocean

Enrico Ser-Giacomi , Lucie Zinger , Shruti Malviya , Colomban de Vargas , Eric Karsenti et al.
Nature Ecology & Evolution, 2018, 2 (8), pp.1243-1249. ⟨10.1038/s41559-018-0587-2⟩
Article dans une revue hal-02364756 v1
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Chemical regulation of body feather microbiota in a wild bird

Staffan Jacob , Louis Sallé , Lucie Zinger , Alexis Chaine , Christine Ducamp et al.
Molecular Ecology, 2018, 27 (7), pp.1727-1738. ⟨10.1111/mec.14551⟩
Article dans une revue hal-04967678 v1

Mapping the imprint of biotic interactions on β-diversity

Ohlmann Marc , Mazel Florent , Chalmandrier Loic , Bec Stephane , Coissac Eric et al.
Ecology Letters, 2018, 21 (11), pp.1660-1669
Article dans une revue hal-01983428 v1

Comparative analysis of DNA extraction methods to study the body surface microbiota of insects: A case study with ant cuticular bacteria

Caroline Birer , Niklas Tysklind , Lucie Zinger , Christophe Duplais
Molecular Ecology Resources, 2017, 17 (6), pp.e34-e45. ⟨10.1111/1755-0998.12688⟩
Article dans une revue hal-02105817 v1
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Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals

Arthur Kocher , Benoît de Thoisy , Francois Catzeflis , Maïlis Huguin , Sophie Valière et al.
Methods in Ecology and Evolution, 2017, 8 (10), pp.1276 - 1283. ⟨10.1111/2041-210X.12729⟩
Article dans une revue hal-01836328 v1
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Climate warming reduces gut microbiota diversity in a vertebrate ectotherm

Elvire Bestion , Staffan Jacob , Lucie Zinger , Lucie Di Gesu , Murielle Richard et al.
Nature Ecology & Evolution, 2017, 1 (6), pp.0161. ⟨10.1038/s41559-017-0161⟩
Article dans une revue hal-01628046 v1
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Using metabarcoding to reveal and quantify plant-pollinator interactions.

André Pornon , Nathalie Escaravage , Monique Burrus , Hélène Holota , Aurélie Khimoun et al.
Scientific Reports, 2016, 6, pp.27282. ⟨10.1038/srep27282⟩
Article dans une revue hal-01333538 v1

Variations in snow depth modify N-related soil microbial abundances and functioning during winter in subalpine grassland

My-Dung Jusselme , Patrick Saccone , Lucie Zinger , Mathieu Faure , Xavier Le Roux et al.
Soil Biology and Biochemistry, 2016, 92, pp.27-37. ⟨10.1016/j.soilbio.2015.09.013⟩
Article dans une revue hal-01688390 v1

Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA

Lucie Zinger , Jérôme Chave , Eric Coissac , Amaia Iribar , Eliane Louisanna et al.
Soil Biology and Biochemistry, 2016, 96, pp.16-19. ⟨10.1016/j.soilbio.2016.01.008⟩
Article dans une revue hal-01532638 v1

Coalescing molecular evolution and DNA barcoding

Lucie Zinger , Herve Philippe
Molecular Ecology, 2016, 25 (9), pp.1908-1910. ⟨10.1111/mec.13639⟩
Article dans une revue hal-02962354 v1
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Vector soup: high‐throughput identification of Neotropical phlebotomine sand flies using metabarcoding

Arthur Kocher , Jean‐charles Gantier , Pascal Gaborit , Lucie Zinger , Helene Holota et al.
Molecular Ecology Resources, 2016, 17 (2), pp.172-182. ⟨10.1111/1755-0998.12556⟩
Article dans une revue hal-04917754 v1

Contrasting microbial biogeographical patterns between anthropogenic subalpine grasslands and natural alpine grasslands

Roberto A. Geremia , Mihai Pușcaș , Lucie Zinger , Jean-Marc Bonneville , Philippe Choler
New Phytologist, 2016, 209 (3), pp.1196 - 1207. ⟨10.1111/nph.13690⟩
Article dans une revue hal-01886752 v1

Landscape-scale distribution patterns of earthworms inferred from soil DNA

J. Pansu , S. de Danieli , Jérémy Puissant , J.M. González , L. Gielly et al.
Soil Biology and Biochemistry, 2015, 83, pp.100-105. ⟨10.1016/j.soilbio.2015.01.004⟩
Article dans une revue hal-02603003 v1

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA

Johan Pansu , Charline Giguet-Covex , Gentile Francesco Ficetola , Ludovic Gielly , Frédéric Boyer et al.
Molecular Ecology, 2015, 24 (7), pp.1485 - 1498. ⟨10.1111/mec.13136⟩
Article dans une revue istex hal-01878599 v1

Effects of two grass species on the composition of soil fungal communities

B. Mouhamadou , J. Puissant , Emmanuelle Personeni , Marie Theveniau , E. M. Kastl et al.
Biology and Fertility of Soils, 2013, 49 (8), pp.1131 - 1139. ⟨10.1007/s00374-013-0810-x⟩
Article dans une revue istex hal-02646208 v1
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Microbes on the Cliff: Alpine Cushion Plants Structure Bacterial and Fungal Communities

Julien Roy , Cécile H. Albert , Sébastien Ibanez , P. Saccone , L. Zinger et al.
Frontiers in Microbiology, 2013, 4, pp.64. ⟨10.3389/fmicb.2013.00064⟩
Article dans une revue hal-01688202 v1

Changes in root-associated microbial communities are determined by species-specific plant growth responses to stress and disturbance

Abderrahim Bouasria , Tarfa Mustafa , Francesco de Bello , Lucie Zinger , Guy Lempérière et al.
European Journal of Soil Biology, 2012, 52, pp.59-66. ⟨10.1016/j.ejsobi.2012.06.003⟩
Article dans une revue istex hal-03114632 v1

Two decades of describing the unseen majority of aquatic microbial diversity

Lucie Zinger , Angélique Gobet , Thomas Pommier
Molecular Ecology, 2012, 21 (8), pp.1878-1896. ⟨10.1111/j.1365-294X.2011.05362.x⟩
Article dans une revue istex halsde-00724641 v1
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Contrasting Diversity Patterns of Crenarchaeal, Bacterial and Fungal Soil Communities in an Alpine Landscape

Lucie Zinger , David P. H. Lejon , Florence Baptist , Abderrahim Bouasria , Serge Aubert et al.
PLoS ONE, 2011, 6 (5), pp.e19950. ⟨10.1371/journal.pone.0019950⟩
Article dans une revue insu-00845128 v1

Corrigendum to “CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies” [Journal of Microbiological Methods 72 (2008) 42–53]

L. Zinger , J. Gury , O. Alibeu , D. Rioux , L. Gielly et al.
Journal of Microbiological Methods, 2008, 73 (2), pp.209. ⟨10.1016/j.mimet.2008.03.001⟩
Article dans une revue istex halsde-00300516 v1

CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies

L. Zinger , J. Gury , O. Alibeu , D. Rioux , L. Gielly et al.
Journal of Microbiological Methods, 2008, 72 (1), pp.42-53. ⟨10.1016/j.mimet.2007.10.005⟩
Article dans une revue istex halsde-00281684 v1

Exonuclease activity of proofreading DNA polymerases is at the origin of artifacts in molecular profiling studies

J. Gury , L. Zinger , L. Gielly , P. Taberlet , R. A. Geremia
Electrophoresis, 2008, 29 (11), pp.2437-2444. ⟨10.1002/elps.200700667⟩
Article dans une revue istex halsde-00300429 v1

Tannin impacts on microbial diversity and the functioning of alpine soils: a multidisciplinary approach

F. Baptist , L. Zinger , J. C. Clement , C. Gallet , R. Guillemin et al.
Environmental Microbiology, 2008, 10 (3), pp.799-809. ⟨10.1111/j.1462-2920.2007.01504.x⟩
Article dans une revue istex halsde-00281689 v1

Plant chemical defense induced by a seed-eating pollinator mutualist

C. Gallet , S. Ibanez , L. Zinger , F. R. Taravel , M. Trierweiler et al.
Journal of Chemical Ecology, 2007, 33 (11), pp.2078-2089. ⟨10.1007/s10886-007-9362-6⟩
Article dans une revue istex halsde-00293025 v1

Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: Toward a high-throughput method for microbial diversity studies in soil

L. Zinger , J. Gury , F. Giraud , S. Krivobok , L. Gielly et al.
Microbial ecology, 2007, 54 (2), pp.203-216. ⟨10.1007/s00248-006-9151-8⟩
Article dans une revue istex halsde-00276491 v1

Differential effects of soil trophic networks on microbial decomposition activity in mountain ecosystems.

Camille Martinez-Almoyna , Amélie Saillard , Lucie Zinger , Clément Lionnet , Cindy Arnoldi et al.
World Biodiversity Forum, Jun 2022, Davos (Suisse), Switzerland
Communication dans un congrès hal-04988073 v1

Differential effects of soil trophic networks on microbial decomposition activity in mountain ecosystems.

Camille Martinez-Almoyna , Amélie Saillard , Lucie Zinger , Clément Lionnet , Cindy Arnoldi et al.
SFE2 GFÖ Joint Meeting, Nov 2022, Metz, France
Communication dans un congrès hal-04988090 v1

Environmental DNA metabarcoding to investigate historic changes in biodiversity

Johan Pansu , Charline Giguet-Covex , Francesco Ficetola Gentile , Ludovic Gielly , Frederic Boyer et al.
6th. Congrès International « Barcode of Life », 2015, guelph, Canada. p. 264
Communication dans un congrès hal-01879611 v1

Spatial modelling of plant diversity from high-throughput environmental dna sequence data

Angelika Studeny , Florence Forbes , Eric Coissac , Alain Viari , Celine Mercier et al.
45èmes Journées de Statistique, Société Française de Statistique, May 2013, Toulouse, France
Communication dans un congrès hal-00933699 v1

Biotic versus abiotic calcite formation on prehistoric cave paintings: the Arcy-sur-Cure ‘Grande Grotte' (Yonne, France) case

Emilie Chalmin , F. d' Orlyé , Lucie Zinger , Laurent Charlet , R. A. Geremia et al.
European Geosciences Union, Apr 2005, Vienne, Austria. pp.185-197
Communication dans un congrès halsde-00452830 v1

Investigations of alteration phenomena of Palaeolithic rock art : The case of the large cave of Arcy-sur-Cure ( Yonne, France, 24000-28000 BP )

Ina Reiche , Emilie Chalmin , M. Menu , Laurent Charlet , F. d' Orlié et al.
GDCh, Jahrestagung des AK-Archäometrie, Mar 2006, Stuttgart, Germany
Communication dans un congrès halsde-00452990 v1

Study of calcite formation on Palaeolithic cave paintings : The case of Arcy-sur-Cure " Grande Grotte " ( 28000 BP Yvonne, France )

I. Reiche , Emilie Chalmin , M. Menu , Laurent Charlet , F. d' Orlié et al.
ISA 2006, May 2006, Québec, Canada. pp.45-54
Communication dans un congrès halsde-00452971 v1

Metabarcoding and NGS techniques to infer pollinator-mediated interactions in plant communities

Christophe Andalo , Charlène Pelizzari , Nathalie Escaravage , Monique Burrus , Lucie Zinger et al.
Joint 2014 Annual Meeting British Ecological Society and Société Française d’Ecologie, Dec 2014, Lille, France. , 2014, Joint 2014 Annual Meeting British Ecological Society and Société Française d’Ecologie
Poster de conférence hal-02739491 v1
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Advances and prospects of environmental DNA in neotropical rainforests

Lucie Zinger , Julian Donald , Sébastien Brosse , Mailyn Adriana Gonzalez , Amaia Iribar et al.
Tropical Ecosystems in the 21st Century, 62, Academic Press, pp.331-373, 2020, Advances in Ecological Research, 978-0-12-821134-2. ⟨10.1016/bs.aecr.2020.01.001⟩
Chapitre d'ouvrage hal-02909735 v1
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Variations spatio-temporelle de la microflore des sols alpins

Lucie Zinger
Ecologie, Environnement. Université Joseph-Fourier - Grenoble I, 2009. Français. ⟨NNT : ⟩
Thèse tel-00421411 v1