Ludovic Duvaux

28
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Publications

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A Strategy for Studying Epigenetic Diversity in Natural Populations: Proof of Concept in Poplar and Oak

Isabelle Lesur Kupin , Odile Rogier , Mamadou Dia Sow , Christophe Boury , Alexandre Duplan et al.

Journal of Experimental Botany, 2024, 75 (18), pp.5568-5584. ⟨10.1093/jxb/erae266⟩

Article dans une revue hal-04621404v1

Draft Genome Sequence of the Environmental Fungus Scedosporium dehoogii

Jason Shiller , Ludovic Duvaux , Patrick Vandeputte , Christophe Lemaire , Amandine Rougeron et al.

Mycopathologia, 2021, 186 (6), pp.889-892. ⟨10.1007/s11046-021-00582-w⟩

Article dans une revue hal-03356977v1
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Threat to Asian wild apple trees posed by gene flow from domesticated apple trees and their pestified pathogens

Alice Feurtey , Ellen Guitton , Marie de Gracia Coquerel , Ludovic Duvaux , Jason Shiller et al.

Molecular Ecology, 2020, 29, pp.4925-4941. ⟨10.1111/mec.15677⟩

Article dans une revue hal-02972460v2

Ice-age climate adaptations trap the alpine marmot in a state of low genetic diversity

Toni I. Gossmann , Achchuthan Shanmugasundram , Stefan Börno , Ludovic Duvaux , Christophe Lemaire et al.

Current Biology, 2019, 29 (10), pp.1712-1720. ⟨10.1016/j.cub.2019.04.020⟩

Article dans une revue hal-02628739v1

Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturiapirina, Venturia aucupariae and Venturia asperata

Bruno Le Cam , Dan Sargent , Jerome Gouzy , Joëlle Amselem , Marie-Noëlle Bellanger et al.

G3, 2019, 9 (8), pp.2405-2414. ⟨10.1534/g3.119.400047⟩

Article dans une revue hal-02176962v1
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Are assortative mating and genital divergence driven by reinforcement ?

Johan Hollander , Mauricio Montaño-Rendón , Giuseppe Bianco , Xi Yang , Anja M. Westram et al.

Evolution Letters, 2018, 2 (6), pp.557-566. ⟨10.1002/evl3.85⟩

Article dans une revue hal-02628918v1
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Developing collaborative works for faster progress on fungal respiratory infections in cystic fibrosis

Carsten Schwarz , Patrick Vandeputte , Amandine Rougeron , Sandrine Giraud , Thomas Dugé de Bernonville et al.

Medical Mycology, 2018, 56 (suppl_1), pp.S42-S59. ⟨10.1093/mmy/myx106⟩

Article dans une revue (article de synthèse) hal-01789211v1
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Targeted re-sequencing confirms the importance of chemosensory genes in aphid host race differentiation

Isobel Eyres , Ludovic Duvaux , Karim Gharbi , Rachel Tucker , David Hopkins et al.

Molecular Ecology, 2017, 26 (1), pp.43-58. ⟨10.1111/mec.13818⟩

Article dans une revue hal-01532713v1

Draft Genome Sequence of the Human-Pathogenic Fungus Scedosporium boydii

Ludovic Duvaux , Jason Shiller , Patrick Vandeputte , Thomas Duge de Bernonville , Christopher Thornton et al.

Genome Announcements, 2017, 5 (37), ⟨10.1128/genomeA.00871-17⟩

Article dans une revue hal-02407748v1
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Differential gene expression according to race and host plant in the pea aphid

Isobel Eyres , Julie Jaquiéry , Akiko Sugio , Ludovic Duvaux , Karim Gharbi et al.

Molecular Ecology, 2016, 25 (17), pp.4197-4215. ⟨10.1111/mec.13771⟩

Article dans une revue hal-01371828v1

The genetic structure of Nautilus pompilius populations surrounding Australia and the Philippines

Rachel Williams , Benjamin Jackson , Ludovic Duvaux , Deborah Dawson , Terry Burke et al.

Molecular Ecology, 2015, 24 (13), pp.3316-3328. ⟨10.1111/mec.13255⟩

Article dans une revue hal-03282538v1
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Dynamics of Copy Number Variation in Host Races of the Pea Aphid

Ludovic Duvaux , Quentin Geissmann , Karim Gharbi , Jing-Jiang Zhou , Julia Ferrari et al.

Molecular Biology and Evolution, 2015, 32 (1), pp.63-80. ⟨10.1093/molbev/msu266⟩

Article dans une revue hal-01945404v1

Human-facilitated metapopulation dynamics in an emerging pest species, Cimex lectularius

Toby Fountain , Ludovic Duvaux , Gavin Horsburgh , Klaus Reinhardt , Roger Butlin

Molecular Ecology, 2014, 23 (5), pp.1071-1084. ⟨10.1111/mec.12673⟩

Article dans une revue hal-03282533v1

Isolation and gene flow: inferring the speciation history of European house mice

Ludovic Duvaux , K. Belkhir , Matthieu Boulesteix , P. Boursot

Molecular Ecology, 2011, 20, pp.5248-5264. ⟨10.1111/j.1365-294X.2011.05343.x⟩

Article dans une revue hal-02299275v1
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Isolation and gene flow: inferring the speciation history of European house mice

Ludovic Duvaux , Khalid Belkhir , Matthieu Boulesteix , Pierre Boursot

Molecular Ecology, 2011, 20 (24), pp.5248-5264. ⟨10.1111/j.1365-294X.2011.05343.x⟩

Article dans une revue hal-02347818v1
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The role of epigenetics in local adaptation in sessile oak trees: a population epigenetic association study

Shannon Brandt , Alexandre Duplan , Isabelle Lesur Kupin , Odile Rogier , Mamadou Dia Sow et al.

ESEB 2025 - The Evolutionary Biology Congress, Aug 2025, Barcelone, Spain

Communication dans un congrès hal-05241621v1

Historical recombination maps estimated with two diverging european and asian populations on bread wheat 3B chromosome

Alice Danguy Des Deserts , Ludovic Duvaux , Pierre Sourdille , Sophie Bouchet

"Quantitative Genetics and Genomics" Gordon Research Conference, Gordon Research Conference., Feb 2019, Barga, Italy

Communication dans un congrès hal-02289531v1

Developing omics approaches to elucidate pathogenic mechanisms in Scedosporium species

N. Papon , P. Vandeputte , Ludovic Duvaux , Jason Shiller , Thomas Duge de Bernonville et al.

Medical Mycology, International Society for Human and Animal Mycology (ISHAM). INT., Jun 2018, Amsterdam, Netherlands. 1 p, ⟨10.1093/mmy/myy036⟩

Communication dans un congrès hal-02735881v1
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The pangenome of European white oaks : A new approach to assess genetic diversity

Florent Couturier , Lucien Piat , Sukanya Denni , Alexis Mergez , Gabriele Magris et al.

Doctorales de la forêt, Feb 2025, Poitiers, France

Poster de conférence hal-05219122v1
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MSpangepop: Simulating complex structural variants under advanced demographic scenarios using the coalescent

Lucien Piat , Sukanya Denni , Siegfried Dubois , Florent Couturier , Nicolas Lapalu et al.

JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. pp.1-1, 2025

Poster de conférence hal-05219528v1
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GrAuFlow: A snakemake workflow for pangenome graph augmentation using short read data

Antoine Malet , Fabrice Legeai , Ludovic Duvaux , Elisabeth Fournier , Pierre Gladieux et al.

Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM2025), Jul 2025, Bordeaux, France

Poster de conférence hal-05209521v1
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The role of epigenetics in local adaptation in oak trees: a population epigenetic analysis

Shannon Brandt , Ludovic Duvaux , Isabelle Lesur , Odile Rogier , Mamadou Sow et al.

5th Epicatch meeting, Jul 2024, Bordeaux, France

Poster de conférence hal-05228453v1

Epigenetic Variation in Tree Evolution: a case study in black poplar (Populus nigra)

Mamadou Dia Sow , Odile Rogier , Isabelle Lesur , Christian Daviaud , Emile Mardoc et al.

Plant Epigenetics (EPIPLANT/SEB 2024), Jul 2024, Clermont-Ferrand, France. , Abstract book of EPIPLANT/SEB 2024, Session VI Chromatin in transcription, replication and repair (Poster #69), pp.131-132

Poster de conférence hal-05056784v1
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Establishment of pangenome graphs for the analysis and monitoring of fungal plant pathogen populations

Nicolas Lapalu , Antoine Loth , Fabrice Legeai , Ludovic Duvaux , Elisabeth Fournier et al.

ISCLB 2024 International Symposium on Cereal Leaf Blights, Jun 2024, Zürich, Switzerland. ⟨10.15454/1.5572369328961167E12⟩

Poster de conférence hal-04623680v1
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Vers une recherche reproductible

Loic Desquilbet , Sabrina Granger , Boris Hejblum , Arnaud Legrand , Pascal Pernot et al.

Unité régionale de formation à l'information scientifique et technique de Bordeaux. Unité régionale de formation à l'information scientifique et technique de Bordeaux, pp.1-161, 2019, 979-10-97595-05-0

Ouvrages hal-02144142v3