Magali Richard

95%
Libre accès
37
Documents
Affiliations actuelles
  • Translational Innovation in Medicine and Complexity / Recherche Translationnelle et Innovation en Médecine et Complexité - UMR 5525 (TIMC)
  • Modèles et Algorithmes pour la Génomique (TIMC-MAGe)

Publications

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Publications

Image document

Inferring cellular heterogeneity with mixture models for DNA methylation rates

Hugo Barbot , David Causeur , Yuna Blum , Magali Richard
JdS, Jun 2025, Marseille, France
Communication dans un congrès hal-05065027 v1

Multi-omic statistical inference of cellular heterogeneity - IGDR SCAN 26/03/2025

Hugo Barbot , David Causeur , Yuna Blum , Magali Richard
IGDR SCAN, Mar 2025, Rennes (CHU), France
Communication dans un congrès hal-05065011 v1

Multi-omic statistical inference of cellular heterogeneity - JOBIM 2024

Hugo Barbot , David Causeur , Yuna Blum , Magali Richard
JOBIM 2024, Jun 2024, Toulouse, France
Communication dans un congrès hal-04664788 v1

Redefining phenotypic heterogeneity of pancreatic ductal adenocarcinoma: A bottom-up approach

Marc Hilmi , Flore Delecourt , Jerôme Rafenne , Taib Bourega , Nelson Dusetti et al.
AACR Special Conference in Cancer Research: Pancreatic Cancer; 2023 Sep 27-30; Boston, Massachusetts., Sep 2023, Boston, United States. pp.B064-B064, ⟨10.1158/1538-7445.panca2023-b064⟩
Communication dans un congrès hal-04456752 v1
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Multi-omic statistical inference of cellular heterogeneity - JdS 2024

Hugo Barbot , David Causeur , Yuna Blum , Magali Richard
JdS 2024, May 2024, Bordeaux, France
Communication dans un congrès hal-04664748 v1
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codabench, a web-plateform to organize scientific competitions

Florent Chuffart , Anne-Catherine Letournel , Isabelle Guyon , Magali Richard
JOBIM2024, Jun 2024, Toulouse, France
Communication dans un congrès hal-04664118 v1
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Retour d'expérience concernant le data challenge épigénétique et médiation à large échelle d'Aussois

Sophie Achard , Dylan Aïssi , Michael Blum , Kevin Caye , Florent Chuffart et al.
CFIES 2017 - Colloque Francophone International sur l’Enseignement de la Statistique, Sep 2017, Grenoble, France
Communication dans un congrès hal-03881657 v1

medepir : MEthylation DEconvoluation PIpeline in R

Magali Richard , Clémentine Decamps , Florian Privé , Michael Gb Blum
Logiciel hal-04979641 v1

ptlmapper: Useful genetic tool allowing to discriminate individuals by comparing the distribution of their phenotype and to map the genetic loci responsible for specific distributions

Florent Chuffart , Magali Richard , Daniel Jost , Gael Yvert
Logiciel hal-04523653 v1

hdmax2: R package hdmax2 performs high dimension mediation analysis

Florence Pittion , Magali Richard , Olivier Francois , Basile Jumentier
Logiciel hal-04660947 v1

decomics: DEConvolution of OMICS data

Slim Karkar , Yuna Blum , Magali Richard
Logiciel hal-04661001 v1

penda

Magali Richard , Florent Chuffart , Daniel Jost , Clémentine Decamps
Logiciel hal-03898939 v1
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Redefining phenotypic intratumor heterogeneity of pancreatic ductal adenocarcinoma: a bottom‐up approach

Marc Hilmi , Flore Delecourt , Jérôme Raffenne , Taib Bourega , Nelson Dusetti et al.
Journal of Pathology, 2025, 265 (4), pp.448-461. ⟨10.1002/path.6398⟩
Article dans une revue hal-04980252 v1
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DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic data

Slim Karkar , Ashwini Sharma , Carl Herrmann , Yuna Blum , Magali Richard
Bioinformatics Advances, 2024, 4 (1), pp.vbae136. ⟨10.1093/bioadv/vbae136⟩
Article dans une revue hal-04660629 v2
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Pacpaint: a histology-based deep learning model uncovers the extensive intratumor molecular heterogeneity of pancreatic adenocarcinoma

Charlie Saillard , Flore Delecourt , Benoit Schmauch , Olivier Moindrot , Magali Svrcek et al.
Nature Communications, 2023, 14 (1), pp.3459. ⟨10.1038/s41467-023-39026-y⟩
Article dans une revue hal-04164254 v1
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Codabench: Flexible, Easy-to-Use and Reproducible Meta-Benchmark Platform

Zhen Xu , Sergio Escalera , Adrien Pavao , Magali Richard , Wei-Wei Tu et al.
Patterns, 2022, 3 (7), pp.100543. ⟨10.1016/j.patter.2022.100543⟩
Article dans une revue hal-03374222 v4
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DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

Clémentine Decamps , Alexis Arnaud , Florent Petitprez , Mira Ayadi , Aurélia Baurès et al.
BMC Bioinformatics, 2021, 22 (1), pp.473. ⟨10.1186/s12859-021-04381-4⟩
Article dans une revue hal-03372668 v1
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Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software

Clémentine Decamps , Florian Privé , Raphael Bacher , Daniel Jost , Arthur Waguet et al.
BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-019-3307-2⟩
Article dans une revue hal-03012777 v1
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Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software

Clémentine Decamps , Florian Privé , Raphael Bacher , Daniel Jost , Arthur Waguet et al.
BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-019-3307-2⟩
Article dans une revue hal-02997889 v1
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PenDA, a rank-based method for personalized differential analysis: Application to lung cancer

Magali Richard , Clémentine Decamps , Florent Chuffart , Elisabeth Brambilla , Sophie Rousseaux et al.
PLoS Computational Biology, 2020, 16 (5), pp.e1007869. ⟨10.1371/journal.pcbi.1007869⟩
Article dans une revue inserm-02868566 v1

CRELD1 is an evolutionarily-conserved maturational enhancer of ionotropic acetylcholine receptors

Manuela d'Alessandro , Magali Richard , Christian Stigloher , Vincent Gache , Thomas Boulin et al.
Article dans une revue hal-03369468 v1
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Genomics of cellular proliferation in periodic environmental fluctuations

Jérôme Salignon , Magali Richard , Etienne Fulcrand , Hélène Duplus‐bottin , Gaël Yvert
Molecular Systems Biology, 2018, 14 (3), pp.e7823. ⟨10.15252/msb.20177823⟩
Article dans une revue hal-02009632 v1
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CRELD1 is an evolutionarily-conserved maturational enhancer of ionotropic acetylcholine receptors

Manuela d'Alessandro , Magali Richard , Christian Stigloher , Vincent Gache , Thomas Boulin et al.
Article dans une revue hal-02009626 v1
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Assigning function to natural allelic variation via dynamic modeling of gene network induction

Magali Richard , Florent Chuffart , Hélène Duplus‐bottin , Fanny Pouyet , Martin Spichty et al.
Molecular Systems Biology, 2018, 14 (1), pp.e7803. ⟨10.15252/msb.20177803⟩
Article dans une revue hal-01976613 v1
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Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects

Florent Chuffart , Magali Richard , Daniel Jost , Claire Burny , Hélène Duplus-Bottin et al.
PLoS Genetics, 2016, 12 (8), pp.e1006213. ⟨10.1371/journal.pgen.1006213⟩
Article dans une revue hal-01976590 v1
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How does evolution tune biological noise?

Magali Richard , Gaël Yvert
Frontiers in Genetics, 2014, ⟨10.3389/fgene.2014.00374⟩
Article dans une revue ensl-01224442 v1

Biosynthesis of ionotropic acetylcholine receptors requires the evolutionarily conserved ER membrane complex

Magali Richard , Thomas Boulin , Valérie Robert , Janet Richmond , Jean-Louis Bessereau
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (11), pp.E1055-E1063. ⟨10.1073/pnas.1216154110⟩
Article dans une revue hal-03369480 v1