Magali Richard

CNRS CRCN

84%

Open access

32

Documents

Current affiliations

1043049
1135218

Researcher identifiers

magali-richard
ResearcherId : AAY-9412-2020
0000-0003-3165-3218
Google Scholar : https://scholar.google.com/citations?hl=fr&user=qy3usEoAAAAJ
IdRef : 168149184
ResearcherId : http://www.researcherid.com/rid/AAY-9412-2020

Publications

	hdmax2: R package hdmax2 performs high dimension mediation analysis Florence Pittion , Magali Richard , Olivier Francois , Basile Jumentier 2024, ⟨swh:1:dir:2104ab22c7a823c80352569346b3787eeda32cd6;origin=https://github.com/bcm-uga/hdmax2;visit=swh:1:snp:0d86431f5a14de2dbe7681c2cef29f30a8292c91;anchor=swh:1:rev:69a04407810a5559a464dcb6ec512effd5ace588⟩ Software hal-04660947v1
	ptlmapper: Useful genetic tool allowing to discriminate individuals by comparing the distribution of their phenotype and to map the genetic loci responsible for specific distributions Florent Chuffart , Magali Richard , Daniel Jost , Gael Yvert 2024, ⟨swh:1:dir:fdb7c18c6cc1da4e23be844d76960975de7d58b4;origin=https://github.com/fchuffar/ptlmapper;visit=swh:1:snp:b5ad098a35fef37940d0859e1c93d62daef2b508;anchor=swh:1:rev:c5068be2f281eab0e315cdfca29f1d5278d97617⟩ Software hal-04523653v1
	decomics: DEConvolution of OMICS data Slim Karkar , Yuna Blum , Magali Richard 2024, ⟨swh:1:dir:c0fcb31492397ae5ecfed04ed8f51e4f3bfafa70;origin=https://gitlab.in2p3.fr/Magali.Richard/decomics;visit=swh:1:snp:b68305bea69e3160c83aaccc906dd63246b9a1bf;anchor=swh:1:rev:50a6a6cf42d94b2b891e75fef206a7e8ef9d0fee⟩ Software hal-04661001v1
	penda Magali Richard , Florent Chuffart , Daniel Jost , Clémentine Decamps 2020, ⟨swh:1:dir:e8496e082b5c3c62500d2e4c728f5db659e6be30;origin=https://github.com/bcm-uga/penda;visit=swh:1:snp:e4dcc1ca19c558baceaa2efa17e924a697494398;anchor=swh:1:rev:5dd5dd268b3cb511d044200105a1270ca0f56d60⟩ Software hal-03898939v1

	AI Competitions and Benchmarks, Practical issues: Proposals, grant money, sponsors, prizes, dissemination, publicity Magali Richard , Yuna Blum , Justin Guinney , Gustavo Stolovitzky , Adrien Pavão 2024 Preprints, Working Papers, ... hal-04342074v1
	DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic data Slim Karkar , Ashwini Sharma , Carl Herrmann , Yuna Blum , Magali Richard 2024 Preprints, Working Papers, ... hal-04660629v1
	Group lasso based selection for high-dimensional mediation analysis Allan Jérolon , Flora Alarcon , Florence Pittion , Magali Richard , Olivier François 2024 Preprints, Working Papers, ... hal-04710663v1
	hdmax2, an R package to perform high dimension mediation analysis Florence Pittion , Basile Jumentier , Aurélie Nakamura , Johanna Lepeule , Olivier Francois 2024 Preprints, Working Papers, ... hal-04658960v3

	Multi-omic statistical inference of cellular heterogeneity - JdS 2024 Hugo Barbot , David Causeur , Yuna Blum , Magali Richard JdS 2024, May 2024, Bordeaux, France Conference papers hal-04664748v1
	codabench, a web-plateform to organize scientific competitions Florent Chuffart , Anne-Catherine Letournel , Isabelle Guyon , Magali Richard JOBIM2024, Jun 2024, Toulouse, France Conference papers hal-04664118v1
	Multi-omic statistical inference of cellular heterogeneity - JOBIM 2024 Hugo Barbot , David Causeur , Yuna Blum , Magali Richard JOBIM 2024, Jun 2024, Toulouse, France Conference papers hal-04664788v1
	Redefining phenotypic heterogeneity of pancreatic ductal adenocarcinoma: A bottom-up approach Marc Hilmi , Flore Delecourt , Jerôme Rafenne , Taib Bourega , Nelson Dusetti AACR Special Conference in Cancer Research: Pancreatic Cancer; 2023 Sep 27-30; Boston, Massachusetts., Sep 2023, Boston, United States. pp.B064-B064, ⟨10.1158/1538-7445.panca2023-b064⟩ Conference papers hal-04456752v1
	Retour d'expérience concernant le data challenge épigénétique et médiation à large échelle d'Aussois Sophie Achard , Dylan Aïssi , Michael Blum , Kevin Caye , Florent Chuffart CFIES 2017 - Colloque Francophone International sur l’Enseignement de la Statistique, Sep 2017, Grenoble, France Conference papers hal-03881657v1

	DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic data Slim Karkar , Ashwini Sharma , Carl Herrmann , Yuna Blum , Magali Richard Bioinformatics Advances, 2024, ⟨10.1093/bioadv/vbae136⟩ Journal articles hal-04716764v1
	Pacpaint: a histology-based deep learning model uncovers the extensive intratumor molecular heterogeneity of pancreatic adenocarcinoma Charlie Saillard , Flore Delecourt , Benoit Schmauch , Olivier Moindrot , Magali Svrcek Nature Communications, 2023, 14 (1), pp.3459. ⟨10.1038/s41467-023-39026-y⟩ Journal articles hal-04164254v1
	Codabench: Flexible, Easy-to-Use and Reproducible Meta-Benchmark Platform Zhen Xu , Sergio Escalera , Adrien Pavao , Magali Richard , Wei-Wei Tu Patterns, 2022, 3 (7), pp.100543. ⟨10.1016/j.patter.2022.100543⟩ Journal articles hal-03374222v4
	DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification Clémentine Decamps , Alexis Arnaud , Florent Petitprez , Mira Ayadi , Aurélia Baurès BMC Bioinformatics, 2021, 22 (1), pp.473. ⟨10.1186/s12859-021-04381-4⟩ Journal articles hal-03372668v1
	Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software Clémentine Decamps , Florian Privé , Raphael Bacher , Daniel Jost , Arthur Waguet BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-019-3307-2⟩ Journal articles hal-02997889v1
	Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software Clémentine Decamps , Florian Privé , Raphael Bacher , Daniel Jost , Arthur Waguet BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-019-3307-2⟩ Journal articles hal-03012777v1
	PenDA, a rank-based method for personalized differential analysis: Application to lung cancer Magali Richard , Clémentine Decamps , Florent Chuffart , Elisabeth Brambilla , Sophie Rousseaux PLoS Computational Biology, 2020, 16 (5), pp.e1007869. ⟨10.1371/journal.pcbi.1007869⟩ Journal articles inserm-02868566v1
	Genomics of cellular proliferation in periodic environmental fluctuations Jérôme Salignon , Magali Richard , Etienne Fulcrand , Hélène Duplus‐bottin , Gaël Yvert Molecular Systems Biology, 2018, 14 (3), pp.e7823. ⟨10.15252/msb.20177823⟩ Journal articles hal-02009632v1
	CRELD1 is an evolutionarily-conserved maturational enhancer of ionotropic acetylcholine receptors Manuela d'Alessandro , Magali Richard , Christian Stigloher , Vincent Gache , Thomas Boulin eLife, 2018, 7, ⟨10.7554/eLife.39649⟩ Journal articles hal-03369468v1
	Assigning function to natural allelic variation via dynamic modeling of gene network induction Magali Richard , Florent Chuffart , Hélène Duplus‐bottin , Fanny Pouyet , Martin Spichty Molecular Systems Biology, 2018, 14 (1), pp.e7803. ⟨10.15252/msb.20177803⟩ Journal articles hal-01976613v1
	CRELD1 is an evolutionarily-conserved maturational enhancer of ionotropic acetylcholine receptors Manuela d'Alessandro , Magali Richard , Christian Stigloher , Vincent Gache , Thomas Boulin eLife, 2018, 7, ⟨10.7554/eLife.39649⟩ Journal articles hal-02009626v1
	Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects Florent Chuffart , Magali Richard , Daniel Jost , Claire Burny , Hélène Duplus-Bottin PLoS Genetics, 2016, 12 (8), pp.e1006213. ⟨10.1371/journal.pgen.1006213⟩ Journal articles hal-01976590v1
	How does evolution tune biological noise? Magali Richard , Gaël Yvert Frontiers in Genetics, 2014, ⟨10.3389/fgene.2014.00374⟩ Journal articles ensl-01224442v1
	Biosynthesis of ionotropic acetylcholine receptors requires the evolutionarily conserved ER membrane complex Magali Richard , Thomas Boulin , Valérie Robert , Janet Richmond , Jean-Louis Bessereau Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (11), pp.E1055-E1063. ⟨10.1073/pnas.1216154110⟩ Journal articles hal-03369480v1

	The backstage of the third Health Data Challenge: Introducing an Organizational Template and Custom, Temporary and Local Codabench Instances. Nicolas Homberg , Magali Richard , Florent Chuffart Jobim 2024, Jun 2024, Toulouse, France. ⟨10.1016/j.patter.2022.100543⟩ Conference poster hal-04664469v1
	Multi-omic statistical inference of cellular heterogeneity - COBICA 2024 Hugo Barbot , David Causeur , Yuna Blum , Magali Richard cobica2024 : Computational Biology of Cancer 2024, Mar 2024, Grenoble, France Conference poster hal-04664694v1
	HDMAX2, an R package to perform high dimension mediation analysis Florence Pittion , Basile Jumentier , Aurélie Nakamura , Johanna Lepeule , Olivier François COBICA 2024, Mar 2024, Grenoble, France Conference poster hal-04664854v1
	THEMA: Identification of molecular mechanisms by which Tumor HEterogeneity influences disease outcome: high-dimension Mediation Analysis Florence Pittion , Olivier François , Magali Richard 31st Annual Intelligent Systems For Molecular Biology and 22nd Annual European Conference on Computational Biology (ISCM/ECCB 2023), Jul 2023, Lyon, France. ISCM/ECCB 2023 Proceedings Conference poster hal-04667942v1

	An investigation of tumor heterogeneity based on computational approaches Magali Richard Cancer. Université Grenoble - Alpes, 2022 Habilitation à diriger des recherches tel-04664124v1