Mathieu Giraud
108
Documents
Researcher identifiers
magiraud
-
0000-0003-2741-8047
- IdRef : 094640610
Presentation
[Mathieu Giraud](http://cnrs.magiraud.org/), directeur de recherche CNRS en informatique au laboratoire [CRIStAL](http://cristal.univ-lille.fr/) (CNRS, Université de Lille, Centrale Lille), conçoit des méthodes algorithmiques pour _étudier des séquences_ au service de projets culturels et de santé.
Mathieu dirige l'[équipe d'informatique musicale Algomus](http://www.algomus.fr) qui travaille sur l'analyse, la modélisation, la visualisation et la génération de musique. Est-ce qu'un ordinateur peut aider à faire comprendre et même à faire apprécier la musique ? Ces travaux en humanités numériques concernent la mélodie, l'harmonie (accords, progressions d'accords, cadences), les rythmes, la texture musicale, pour finalement modéliser la structure et la forme musicale et proposer de nouvelles manières d'interagir et de valoriser le patrimoine et le matrimoine musical.
Mathieu a mené durant 15 ans des recherches sur l'analyse et la comparaison de séquences d'ADN et d'ARN, notamment dans l'équipe de bioinformatique [Bonsai](http://cristal.univ-lille.fr/bonsai/). Il continue de travailler sur des méthodes pour [mieux connaître les populations de globules blancs](http://www.vidjil.org), en particulier pour améliorer les diagnostics et les suivis de leucémie. Il est le responsable technique du [consortium VidjilNet](http://www.vidjil.net) au sein d'Inria et s'intéresse à l'éthique des traitements de données médicales.
Mathieu collabore avec des musicien·nes (artistes, enseignant·es, grand public...) ainsi qu'avec des professionnel·les de santé. Il s'inscrit dans une démarche de [science ouverte](https://fr.wikipedia.org/wiki/Science_ouverte), en particulier sur les logiciels libres, et contribue à des politiques locales et nationales sur l'inclusivité et sur le genre, ainsi que sur les transports publics.
Prof. [http://cnrs.magiraud.org/](Mathieu Giraud) (he/they) is a Senior CNRS Researcher at the Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) in the Department of Computer Science at Université Lille, France. They obtained an MS from École Normale Supérieure de Lyon in 2002, a PhD from Université Rennes 1 in 2005, and completed a habilitation thesis at Université de Lille in 2016.
Mathieu previously worked on weighted automata, specialized architectures using FPGAs, high-performance computing with GPUs and many-core architectures, and RNA bioinformatics. Their current research focuses on text algorithms and data-driven methods for computer musicology and bioinformatics. Together with colleagues, Mathieu designs and implements algorithms to analyze music scores and DNA sequences. They engage in both theoretical studies and applied projects involving musicians and clinicians.
Mathieu is a strong advocate for open research and outreach programs. They are also deeply interested in local and national policies that promote social well-being, particularly in areas such as gender inclusivity, public transport, and environmental sustainability.
Mathieu leads the [Algomus computer music team](http://www.algomus.fr). The team designs methods and algorithms to study the high-level structure of music, such as musical forms, by combining musical expertise, text algorithms, and data analysis.
Mathieu was also a member of the joint bioinformatics Bonsai team with Inria Lille, working on the [Vidjil](http://www.vidjil.org) project focused on immune repertoire analysis. He is now the CTO of the non-profit [VidjilNet](http://www.vidjil.net) consortium, advising on the development of bioinformatics software for health and on the ethical considerations surrounding the collection and processing of healthcare data.
Mathieu is a former member of the Inria national evaluation board and is currently a member of the Software and Source Codes College of the French national committee for Open Science.
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Co-creative orchestration of Angeles with layer scores and orchestration plansInternational Conference on Artificial Intelligence in Music, Sound, Art and Design (EvoMUSART 2024), 2024, Aberystwyth, United Kingdom. ⟨10.1007/978-3-031-56992-0_15⟩
Conference papers
hal-04388097v1
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The CollabScore project – From Optical Recognition to Multimodal Music SourcesWoRMS 2024: 6th International Workshop on Reading Music Systems, Jorge Calvo-Zaragoza; Alexander Pacha; Elona Shatri, Nov 2024, Online, France. pp.33-37, ⟨10.48550/arXiv.2411.15741⟩
Conference papers
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Suggestions pédagogiques personnalisées pour la guitareJournées d'Informatique Musicale (JIM 2024), May 2024, Marseille, France
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The ‘Measure Map’: an inter-operable standard for aligning symbolic musicInternational Conference on Digital Libraries for Musicology (DLfM 2023), Nov 2023, Milano, Italy. ⟨10.1145/3625135.3625136⟩
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hal-04197400v1
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Adding descriptors to melodies improves pattern matching: a study on Slovenian folk songsInternational Society for Music Information Retrieval Conference (ISMIR 2023), 2023, Milan, Italy. pp.474-481, ⟨10.5281/zenodo.10265328⟩
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hal-04142315v1
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The Games We Play: Exploring The Impact of ISMIR on MusicologyInternational Society for Music Information Retrieval Conference (ISMIR 2023), Nov 2023, Milano, Italy. pp.474-481, ⟨10.5281/zenodo.10265344⟩
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Analyse et essai de reconstruction de structures arborescentes des grilles de jazzJournées d'Informatique Musicale (JIM 2023), May 2023, Paris, France. pp.62-67
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A Corpus Describing Orchestral Texture in First Movements of Classical and Early-Romantic SymphoniesDigital Libraries for Musicology (DLfM 2022), 2022, Prague, Czech Republic. pp.22-35
Conference papers
hal-03663112v1
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Soutenir en classe l'écoute active, l'autonomie et l'échange en analyse musicale avec la plateforme web DezrannJournées d'Informatique Musicale (JIM 2022) / Sound and Music Computing (SMC 2022), 2022, Saint-Étienne, France. pp.617-623, ⟨10.5281/zenodo.6800855⟩
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hal-03618017v1
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Personalizing AI for Co-Creative Music Composition from Melody to StructureSound and Music Computing (SMC 2022), 2022, Saint-Étienne, France. pp.314-321, ⟨10.5281/zenodo.6573287⟩
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hal-03618015v1
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Modeling and Editing Cross-Modal Synchronization on a Label Web CanvasMusic Encoding Conference (MEC 2022), 2022, Halifax, Canada. pp.61-71, ⟨10.17613/krxd-pq66⟩
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hal-03583179v2
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What are the most used guitar positions?International Conference on Digital Libraries for Musicology (DLfM 2021), 2021, Online, United Kingdom. pp.84-92, ⟨10.1145/3469013.3469024⟩
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hal-03279863v1
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Symbolic Textural Features and Melody/Accompaniment Detection in String QuartetsInternational Symposium on Computer Music Multidisciplinary Research (CMMR 2021), Nov 2021, Online, Japan. pp.175-184
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hal-03322543v1
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Estimating keys and modulations in musical piecesSound and Music Computing Conference (SMC 2020), Simone Spagnol; Andrea Valle, Jun 2020, Torino, Italy
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hal-02886399v2
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Encodages de tablatures pour l'analyse de musique pour guitareJournées d'Informatique Musicale (JIM 2020), 2020, Strasbourg (en ligne), France
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hal-02934382v1
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Modeling and learning structural breaks in sonata formsInternational Society for Music Information Retrieval Conference (ISMIR 2019), 2019, Delft, Netherlands. ⟨10.5281/zenodo.3527828⟩
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hal-02162936v2
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Génération photo-réaliste de défauts sur des images de surfaces extérieures d'avions acquises par un drone autonomeORASIS, journées francophones des jeunes chercheurs en vision par ordinateur, May 2019, Saint-Dié-des-Vosges, France
Conference papers
hal-02164953v1
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Realtime collaborative annotation of music scores with DezrannInternational Symposium on Computer Music Modeling and Retrieval (CMMR 2019), 2019, Marseille, France
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hal-02162935v1
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L'informatique musicale : informatique et musique en interdisciplinaritéJournées d'Informatique Musicale (JIM 2019), May 2019, Bayonne, France
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hal-02348292v1
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Relevance of musical features for cadence detectionInternational Society for Music Information Retrieval Conference (ISMIR 2018), 2018, Paris, France
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hal-01801060v1
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Dezrann, a Web Framework to Share Music AnalysisInternational Conference on Technologies for Music Notation and Representation (TENOR 2018), May 2018, Montréal, Canada. pp.104-110
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hal-01796787v1
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Les pierres musicales, un dispositif pédagogique interactifJournées d'Informatique Musicale (JIM 2017), 2017, Paris, France
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hal-01517519v1
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Sketching Sonata Form Structure in Selected Classical String Quartets ISMIR 2017 - International Society for Music Information Retrieval Conference, 2017, Suzhou, China
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hal-01568703v1
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Indexer un ensemble de séquences ADN annotéesJOBIM, Jun 2016, Lyon, France
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hal-01576319v1
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Improving voice separation by better connecting contigsInternational Society for Music Information Retrieval Conference (ISMIR 2016), Aug 2016, New York, United States
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Comparing Voice and Stream Segmentation AlgorithmsInternational Society for Music Information Retrieval Conference (ISMIR 2015), Oct 2015, Malaga, Spain. pp.493-499
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hal-01246693v1
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Modeling Musical Structure with Parametric GrammarsMathematics and Computation in Music (MCM 2015), Jun 2015, London, United Kingdom. pp.85-96, ⟨10.1007/978-3-319-20603-5_8⟩
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hal-01205422v1
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Modélisation et visualisation de schémas d'analyse musicale avec music21Journées d'Informatique Musicale (JIM 2015), 2015, Montréal, Canada
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hal-01135118v1
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Perfect Hashing Structures for Parallel Similarity SearchesInternational Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015), 2015, Hyderabad, India. pp.332-341, ⟨10.1109/IPDPSW.2015.105⟩
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Vers une analyse automatique des formes sonatesJournées d'Informatique Musicale (JIM 2014), 2014, Bourges, France. pp.113-118
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hal-01009166v1
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Searching for alternate RNA structures in genomic sequencesComputational Methods for Structural RNAs, CMSR'14, Sep 2014, Strasbourg, France. pp.13-24, ⟨10.15455/CMSR.2014.0002⟩
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hal-01084319v1
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Diagnostic et suivi des leucémies aiguës lymphoblastiques (LAL) par séquençage haut-débit (HTS)Congrès de la Société Française d'Hématologie (SFH), 2014, Paris, France
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Towards Modeling Texture in Symbolic DataInternational Society for Music Information Retrieval Conference - ISMIR, 2014, Taipei, Taiwan. pp.59-64
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Melodic contour representations in the analysis of children's songs3rd International Workshop on Folk Music Analysis, Jun 2013, Amsterdam, Netherlands. pp.40-43
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Fragmentations with pitch, rhythm and parallelism constraints for variation matchingInternational Symposium on Computer Music Multidisciplinary Research (CMMR), Oct 2013, Marseille, France. pp.298-312, ⟨10.1007/978-3-319-12976-1_19⟩
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Suivi de la leucémie résiduelle par séquençage haut-débitJOBIM, Jul 2013, Toulouse, France
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Subject and counter-subject detection for analysis of the Well-Tempered Clavier fuguesInternational Symposium on Computer Music Modelling and Retrieval (CMMR 2012), 2012, United Kingdom. pp.661-673
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Detecting Episodes with Harmonic Sequences for Fugue AnalysisISMIR - International Society for Music Information Retrieval Conference - 2012, 2012, Porto, Portugal
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hal-00712565v1
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Rhythm extraction from polyphonic symbolic music12th International Society for Music Information Retrieval Conference (ISMIR 2011), Oct 2011, United States. pp.375-380
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hal-00636058v1
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Bit-Parallel Multiple Pattern MatchingParallel Processing and Applied Mathematics / Parallel Biocomputing Conference (PPAM / PBC 11), 2011, Torun, Poland
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inria-00637227v1
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biomanycores.org: a repository of interoperable open-source code for many-core bioinformaticsJOBIM 2011, Jul 2011, Paris, France
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Biomanycores, open-source parallel code for many-core bioinformaticsBioinformatics Open Source Conference (BOSC 2011), 2011, Vienne, Austria
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inria-00623390v1
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The Number of Runs in a Ternary WordPrague Stringology Conference 2010, Aug 2010, France. pp.178-181
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Parallel Position Weight Matrices AlgorithmsInternational Symposium on Parallel and Distributed Computing (ISPDC 2009), Jul 2009, Lisboa, Portugal. pp.65-69, ⟨10.1109/ISPDC.2009.31⟩
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inria-00438215v1
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GPU Parallelization of Algebraic Dynamic ProgrammingParallel Processing and Applied Mathematics / Parallel Biocomputing Conference (PPAM / PBC 09), Sep 2009, Wroclaw, Poland
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inria-00438219v1
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Biomanycores, a repository of interoperable open-source code for many-cores bioinformaticsBioinformatics Open Source Conference (BOSC), Jun 2009, Stockholm, Sweden
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inria-00438224v1
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Not so many runs in strings2nd International Conference on Language and Automata Theory and Applications (LATA 2008), Mar 2008, Tarragona, Spain
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inria-00271630v1
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Protein similarity search with subset seeds on a dedicated reconfigurable hardwareParallel Bio-Computing, Sep 2007, Gdansk,, Poland
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inria-00178325v1
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Seed-Based Exclusion Method for Non-coding RNA Gene Search13th Annual International Computing and Combinatorics Conference (COCOON 2007), Jul 2007, Banff, Canada. pp.27-39, ⟨10.1007/978-3-540-73545-8_6⟩
Conference papers
inria-00271642v1
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Path-Equivalent Removal of Epsilon-Transitions2006, pp.23--33, ⟨10.1007/11812128_4⟩
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Organisation modulaire des séquences d'ADN répétées: application à l'étude des hélitrons non-autonomes dans le génome d'Arabidopsis thalianaXIIIe colloque Eléments Transposables, 2005, Orsay, France
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Recherches de motifs et de similarités en bioinformatique : modélisations, solutions logicielles et matériellesMajecSTIC 2005 : Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC, IRISA – IETR – LTSI, Nov 2005, Rennes/France, pp.18--37
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mreps: a program for exhaustive search for tandem repeats in DNA sequencesSixth Annual International Conference on Research in Computational Biology - RECOMB 2002, Apr 2002, Washington, DC, US
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Maximal Repetitions and Application to DNA sequencesJournées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'2000, 2000, Montpellier/France, pp.165--172
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inria-00107854v1
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Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic LeukemiaAnton W. Langerak. Immunogenetics, 2453, Springer, pp.153-167, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_10⟩
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One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic LeukemiaAnton W. Langerak. Immunogenetics. Methods and Protocols, 2453, Springer, pp.43-59, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_3⟩
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Computational Analysis of Musical FormDavid Meredith. Computational Music Analysis, Springer, pp.113-136, 2016, 978-3-319-25929-1. ⟨10.1007/978-3-319-25931-4_5⟩
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Manycore high-performance computing in bioinformaticsLaura Elnitski, Helen Piontkivska, Lonnie R Welch. Advances in Genomic Sequence Analysis and Pattern Discovery, World Scientific, chapter 8, 2011
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Bioinformatics ApplicationsGokhale, Maya B., Graham, Paul S. Reconfigurable Computing. Accelerating Computation with Field-Programmable Gate Arrays, Springer, 2005, Foundation of computing, 0-387-26105-2
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inria-00000501v1
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Towards modeling alternating patterns through inter-notes relations23rd International Society for Music Information Retrieval Conference (ISMIR 2022), Late-Breaking Demo Session, Dec 2022, Bangalore, India. , pp.LV10
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Towards Custom Dilated Convolutions on Pitch SpacesInternational Society for Music Information Retrieval Conference (ISMIR 2020), Late-Breaking Demo Session, 2020, Montréal, Canada. Extended Abstracts for the Late-Breaking Demo Session of the 21st Int. Society for Music Information Retrieval Conference
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Vers une recherche automatisée du parcours tonalConference poster hal-01972701v1 |
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Modelling Keys and Modulation with Scales and Harmonic ProgressionsDigital Music Research Network Workshop (DMRN+14), 2019, London, France
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Using Dezrann in Musicology and MIR ResearchDigital Libraries for Musicology (DLfM 2018), 2018, Paris, France
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Une application web interactive pour l'analyse musicaleEuropean Music Analysis Conference (EuroMAC 2017), 2017, Strasbourg, France. 2017
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Multiclonal Diagnosis and MRD Follow-up in ALL with HTS Coupled with a Bioinformatic AnalysisConference poster hal-01100290v1 |
Towards Detecting Interleaved Voices in Telemann Flute FantasiasDMRN+19: Digital Music Research Network One-day Workshop, 2024
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From local markers to global form: Computational modeling of musical structure2021
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Algo-RythmeŒuvres et Recherches, 2019, pp.2019:05
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As We Are BlindŒuvres et Recherches, 2019, pp.2019:01
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Fixing the Horse before the Cart: Reconstructing the Genesis of Classical Forms through Big Data and Computational Methods2018
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A dataset of sequences with manually curated V(D)J designations2016
Other publications
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Alignment-free detection and seed-based identification of multi-loci V(D)J recombinations in Vidjil-algo2024
Preprints, Working Papers, ...
hal-04361907v2
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Establishing a national research software award2023
Preprints, Working Papers, ...
hal-04258977v1
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What does the Mongeau-Sankoff algorithm compute?2019
Preprints, Working Papers, ...
hal-02340896v1
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Compter les globules blancs, analyser les partitionsInformatique [cs]. Université de Lille 1 – Sciences et Technologies, 2016
Accreditation to supervise research
tel-01577763v1
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“Software and source codes” College: Minutes from the work session, November 30th 2023Comité pour la Science Ouverte. 2024
Reports
hal-04683957v1
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Highlights of the "Software Pillar of Open Science" workshopComité pour la Science Ouverte. 2024
Reports
hal-04600258v1
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Médiation Scientifique : une facette de nos métiers de la recherche[Interne] Inria. 2013, pp.34
Reports
hal-00804915v1
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DezrannSoftware hal-04434328v1 |
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VidjilSoftware hal-04453057v1 |