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Mathieu Giraud

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Researcher identifiers

Presentation

[Mathieu Giraud](http://cnrs.magiraud.org/), directeur de recherche CNRS en informatique au laboratoire [CRIStAL](http://cristal.univ-lille.fr/) (CNRS, Université de Lille, Centrale Lille), conçoit des méthodes algorithmiques pour *étudier des séquences* au service de projets culturels et de santé. Il l'équipe d'informatique musicale Algomus sur [la modélisation, l'analyse, la visualisation et la génération de partitions](http://www.algomus.fr) vues comme des séquences de notes. Est-ce qu'un ordinateur peut aider à faire comprendre et même à faire apprécier la musique ? Ces travaux en humanités numériques concernent la mélodie, l'harmonie (accords, progressions d'accords, cadences), les rythmes, la texture musicale, pour finalement modéliser la structure et la forme musicale. Mathieu a mené durant 15 ans des recherches sur l'analyse et la comparaison de séquences d'ADN, notamment dans l'équipe de bioinformatique [Bonsai](http://cristal.univ-lille.fr/bonsai/), Il travaille toujours sur des méthodes pour [mieux connaître les populations de globules blancs](http://www.vidjil.org), en particulier pour améliorer les diagnostics et les suivis de leucémie. Il est le responsable technique du [consortium VidjilNet](http://www.vidjil.net) au sein d'Inria et s'intéresse à l'éthique des traitements de données médicales. Mathieu collabore avec des musiciens (artistes, enseignants, grand public...) ainsi qu'avec des cliniciens et des professionels de santé. Il s'inscrit dans une démarche de [science ouverte](https://fr.wikipedia.org/wiki/Science_ouverte).
<p>Prof. Mathieu Giraud is a CNRS Senior Researcher in the Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL), the departement of Computer Science of the Université Lille, in France. He obtained a MS in École Normale Supérieure de Lyon in 2002, and a PhD from the Université Rennes 1 in 2005, and an habilitation thesis from Université de Lille in 2016.</p> <p>He previously worked on weighted automata and specialized architectures using FPGAs, on high-performance computing using GPUs and many-cores architectures, and on RNA bioinformatics. His current research interests target <b>text algorithms and data-based methods for computer musicology and bioinformatics</b>. With his colleagues, he designs and implements algorithms analyzing music scores and DNA sequences. He works both on theoretical studies and on applied projects involving musicians and clinicians. Mathieu strongly support open research and outreach programmes.</p> <p>Mathieu leads the Algomus computer music team (<a href="http://www.algomus.fr">www.algomus.fr</a>). The team design methods and algorithms to study high-level structure of music such as musical forms, combining musical expertise, text algorithms and data analysis. Mathieu was also a member of the joint bioinformatics Bonsai team with Inria Lille, working on the Vidjil project (<a href="http://www.vidjil.org">www.vidjil.org</a>) on immune repertoire analysis. He is now the CTO of the non-profit <a href="http://www.vidjil.net">VijilNet</a> consortium, counseling the development of bioinformatics software for health and the ethics on collecting and processing healthcare data. Mathieu is a former member of the Inria national evaluation board.</p></

Publications

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Associations between music training and the dynamics of writing music by hand

Aurélien Bertiaux , François Gabrielli , Mathieu Giraud , Florence Levé
Musicae Scientiae, inPress, 27 (1), ⟨10.1177/1029864920972145⟩
Journal articles hal-02979816v1
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Weighted Automata Computation of Edit Distances with Consolidations and Fragmentations

Mathieu Giraud , Florent Jacquemard
Information and Computation, 2022, 282, pp.104652. ⟨10.1016/j.ic.2020.104652⟩
Journal articles hal-01857267v4
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I Keep Counting : An Experiment in Human/AI Co-creative Songwriting

Gianluca Micchi , Louis Bigo , Mathieu Giraud , Richard Groult , Florence Levé et al.
Transactions of the International Society for Music Information Retrieval (TISMIR), 2021, 4 (1), pp.263-275. ⟨10.5334/tismir.93⟩
Journal articles hal-03399076v1
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Not All Roads Lead to Rome: Pitch Representation and Model Architecture for Automatic Harmonic Analysis

Gianluca Micchi , Mark Gotham , Mathieu Giraud
Transactions of the International Society for Music Information Retrieval (TISMIR), 2020, 3 (1), pp.42-54. ⟨10.5334/tismir.45⟩
Journal articles hal-02934374v1

Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study

Monika Brüggemann , Michaela Kotrova , Henrik Knecht , Jack Bartram , Myriam Boudjogrha et al.
Journal articles hal-02169053v1
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Learning Sonata Form Structure on Mozart's String Quartets

Pierre Allegraud , Louis Bigo , Laurent Feisthauer , Mathieu Giraud , Richard Groult et al.
Transactions of the International Society for Music Information Retrieval (TISMIR), 2019, 2 (1), pp.82-96. ⟨10.5334/tismir.27⟩
Journal articles hal-02366640v1
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Indexing labeled sequences

Tatiana Rocher , Mathieu Giraud , Mikaël Salson
PeerJ Computer Science, 2018, 4, pp.1-14. ⟨10.7717/peerj-cs.148⟩
Journal articles hal-01743104v1
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High-throughput sequencing in acute lymphoblastic leukemia: Follow-up of minimal residual disease and emergence of new clones

Mikael Salson , Mathieu Giraud , Aurélie Caillault , Nathalie Grardel , Nicolas Duployez et al.
Leukemia Research, 2017, 53, pp.1-7. ⟨10.1016/j.leukres.2016.11.009⟩
Journal articles hal-01404817v1

High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges.

Anton W Langerak , Monika Brüggemann , Frédéric Davi , Nikos Darzentas , Jacques J M van Dongen et al.
Journal of Immunology, 2017, pp.1602050. ⟨10.4049/jimmunol.1602050⟩
Journal articles hal-01516289v1
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Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing

Marc Duez , Mathieu Giraud , Ryan Herbert , Tatiana Rocher , Mikael Salson et al.
PLoS ONE, 2016, 11 (11), ⟨10.1371/journal.pone.0166126⟩
Journal articles hal-01397079v1
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Multi-loci diagnosis of acute lymphoblastic leukaemia with high-throughput sequencing and bioinformatics analysis

Yann Ferret , Aurélie Caillault , Shéhérazade Sebda , Marc Duez , Nathalie Grardel et al.
British Journal of Haematology, 2016, 173 (3), pp.413-420. ⟨10.1111/bjh.13981⟩
Journal articles hal-01279160v1

Modeling alternate RNA structures in genomic sequences.

Azadeh Saffarian , Mathieu Giraud , Hélène Touzet
Journal of Computational Biology, 2015, 22 (3), pp.190-204
Journal articles hal-01228130v1

The predictive strength of next-generation sequencing MRD detection for relapse compared with current methods in childhood ALL.

Michaela Kotrova , Katerina Muzikova , Ester Mejstrikova , Michaela Novakova , Violeta Bakardjieva-Mihaylova et al.
Blood, 2015, 126 (8), pp.1045-7. ⟨10.1182/blood-2015-07-655159⟩
Journal articles hal-01241663v1
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Combined transcriptome studies identify AFF3 as a mediator of the oncogenic effects of β-catenin in adrenocortical carcinoma

Lucile Lefèvre , Hanin Omeiri , Ludivine Drougat , Constanze Hantel , Mathieu Giraud et al.
Oncogenesis, 2015, 4 (7), pp.e161. ⟨10.1038/oncsis.2015.20⟩
Journal articles inserm-01182372v1
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Computational Fugue Analysis

Mathieu Giraud , Richard Groult , Emmanuel Leguy , Florence Levé
Computer Music Journal, 2015, 39 (2), pp.77-96. ⟨10.1162/COMJ_a_00300⟩
Journal articles hal-01113520v1
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Algorithmes pour l’analyse de la musique tonale

Mathieu Giraud , Marc Rigaudière
Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2014, Informatique musicale, 33 (7-8), pp.567-586. ⟨10.3166/tsi.33.567-586⟩
Journal articles hal-01107721v1
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Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing

Mathieu Giraud , Mikaël Salson , Marc Duez , Céline Villenet , Sabine Quief et al.
BMC Genomics, 2014, 15 (1), pp.409. ⟨10.1186/1471-2164-15-409⟩
Journal articles hal-01009173v1
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RNA Locally Optimal Secondary Structures

Azadeh Saffarian , Mathieu Giraud , Antoine de Monte , Hélène Touzet
Journal of Computational Biology, 2012, 19 (10), pp.1120-1133. ⟨10.1089/cmb.2010.0178⟩
Journal articles hal-00756249v1
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Parallel Position Weight Matrices Algorithms

Mathieu Giraud , Jean-Stéphane Varré
Parallel Computing, 2011, 37, pp.466-478. ⟨10.1016/j.parco.2010.10.001⟩
Journal articles hal-00623404v1

Les séquenceurs à haut débit

Mathieu Giraud , Mikaël Salson
Interstices, 2011
Journal articles hal-01350176v1
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Asymptotic behavior of the numbers of runs and microruns

Mathieu Giraud
Information and Computation, 2009, 207 (11), pp.1221-1228. ⟨10.1016/j.ic.2009.02.007⟩
Journal articles hal-00438214v1
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Optimal neighborhood indexing for protein similarity search

Pierre Peterlongo , Laurent Noé , Dominique Lavenier , van Hoa Nguyen , Gregory Kucherov et al.
BMC Bioinformatics, 2008, 9 (534), ⟨10.1186/1471-2105-9-534⟩
Journal articles inria-00340510v1
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Path-equivalent developments in acyclic weighted automata

Mathieu Giraud , Philippe Veber , Dominique Lavenier
International Journal of Foundations of Computer Science, 2007, 18 (4), pp.799-812. ⟨10.1142/S012905410700498X⟩
Journal articles inria-00271646v1

Symbiologik : jouez avec les gènes

Nicolas Deroche , Mathieu Giraud
Interstices, 2006
Journal articles hal-01352610v1
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Découverte et analyse de signatures à grande échelle dans les protéines amyloïdes.

Sandrine Pawlicki , Anne-Sophie Valin , Mathieu Giraud , Gilles Georges , Christian Delamarche et al.
Regard sur la biochimie, 2006, pp.1-12
Journal articles hal-00456604v1

Domain organization within repeated DNA sequences: application to the study of a family of transposable elements.

Sébastien Tempel , Mathieu Giraud , Dominique Lavenier , Israël-César C. Lerman , Anne-Sophie Valin et al.
Bioinformatics, 2006, 22(16), pp.1948-1954
Journal articles hal-00090517v1

The dog and rat olfactory receptor repertoires

Pascale Quignon , Mathieu Giraud , Maud Rimbault , Patricia Lavigne , Sandrine Tacher et al.
Genome Biology, 2005, 6 (10), pp.R83. ⟨10.1186/gb-2005-6-10-r83⟩
Journal articles hal-00107100v1
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A Corpus Describing Orchestral Texture in First Movements of Classical and Early-Romantic Symphonies

Dinh-Viet-Toan Le , Mathieu Giraud , Florence Levé , Francesco Maccarini
Digital Libraries for Musicology (DLfM 2022), 2022, Prague, Czech Republic. pp.22-35
Conference papers hal-03663112v1
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Modeling and Editing Cross-Modal Synchronization on a Label Web Canvas

Louis Garczynski , Mathieu Giraud , Emmanuel Leguy , Philippe Rigaux
Music Encoding Conference (MEC 2022), 2022, Halifax, Canada
Conference papers hal-03583179v1
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Soutenir en classe l'écoute active, l'autonomie et l'échange en analyse musicale avec la plateforme web Dezrann

Alice Sauda , Mathieu Giraud , Emmanuel Leguy
Journées d'Informatique Musicale (JIM 2022) / Sound and Music Computing (SMC 2022), 2022, Saint-Étienne, France. pp.617-623, ⟨10.5281/zenodo.6800855⟩
Conference papers hal-03618017v1
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Personalizing AI for Co-Creative Music Composition from Melody to Structure

Ken Déguernel , Mathieu Giraud , Richard Groult , Sebastien Gulluni
Sound and Music Computing (SMC 2022), 2022, Saint-Étienne, France. pp.314-321, ⟨10.5281/zenodo.6573287⟩
Conference papers hal-03618015v1
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What are the most used guitar positions?

Jules Cournut , Louis Bigo , Mathieu Giraud , Nicolas Martin , David Régnier et al.
International Conference on Digital Libraries for Musicology (DLfM 2021), 2021, Online, United Kingdom. pp.84-92, ⟨10.1145/3469013.3469024⟩
Conference papers hal-03279863v1
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Symbolic Textural Features and Melody/Accompaniment Detection in String Quartets

Louis Soum-Fontez , Mathieu Giraud , Nicolas Guiomard-Kagan , Florence Levé
International Symposium on Computer Music Multidisciplinary Research (CMMR 2021), Nov 2021, Online, Japan. pp.175-184
Conference papers hal-03322543v1
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Estimating keys and modulations in musical pieces

Laurent Feisthauer , Louis Bigo , Mathieu Giraud , Florence Levé
Sound and Music Computing Conference (SMC 2020), Simone Spagnol; Andrea Valle, Jun 2020, Torino, Italy
Conference papers hal-02886399v2
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Encodages de tablatures pour l'analyse de musique pour guitare

Jules Cournut , Louis Bigo , Mathieu Giraud , Nicolas Martin
Journées d'Informatique Musicale (JIM 2020), 2020, Strasbourg (en ligne), France
Conference papers hal-02934382v1
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Modeling and learning structural breaks in sonata forms

Laurent Feisthauer , Louis Bigo , Mathieu Giraud
International Society for Music Information Retrieval Conference (ISMIR 2019), 2019, Delft, Netherlands. ⟨10.5281/zenodo.3527828⟩
Conference papers hal-02162936v2
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Génération photo-réaliste de défauts sur des images de surfaces extérieures d'avions acquises par un drone autonome

Bryan Deliencourt , Mathieu Giraud , Julien Miranda , Stanislas Larnier , Ariane Herbulot et al.
ORASIS, journées francophones des jeunes chercheurs en vision par ordinateur, May 2019, Saint-Dié-des-Vosges, France
Conference papers hal-02164953v1
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L'informatique musicale : informatique et musique en interdisciplinarité

Moreno Andreatta , Gérard Assayag , Myriam Desainte-Catherine , Jean-Louis Giavitto , Mathieu Giraud et al.
Journées d'Informatique Musicale (JIM 2019), May 2019, Bayonne, France
Conference papers hal-02348292v1

Realtime collaborative annotation of music scores with Dezrann

Ling Ma , Mathieu Giraud , Emmanuel Leguy
International Symposium on Computer Music Modeling and Retrieval (CMMR 2019), 2019, Marseille, France
Conference papers hal-02162935v1
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Relevance of musical features for cadence detection

Louis Bigo , Laurent Feisthauer , Mathieu Giraud , Florence Levé
International Society for Music Information Retrieval Conference (ISMIR 2018), 2018, Paris, France
Conference papers hal-01801060v1
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Dezrann, a Web Framework to Share Music Analysis

Mathieu Giraud , Richard Groult , Emmanuel Leguy
International Conference on Technologies for Music Notation and Representation (TENOR 2018), May 2018, Montréal, Canada. pp.104-110
Conference papers hal-01796787v1
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Les pierres musicales, un dispositif pédagogique interactif

Julien Debove , David Durand , Marion Giraud , Mathieu Giraud , Richard Groult et al.
Journées d'Informatique Musicale (JIM 2017), 2017, Paris, France
Conference papers hal-01517519v1
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Sketching Sonata Form Structure in Selected Classical String Quartets

Louis Bigo , Mathieu Giraud , Richard Groult , Nicolas Guiomard-Kagan , Florence Levé et al.
ISMIR 2017 - International Society for Music Information Retrieval Conference, 2017, Suzhou, China
Conference papers hal-01568703v1
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Improving voice separation by better connecting contigs

Nicolas Guiomard-Kagan , Mathieu Giraud , Richard Groult , Florence Levé
International Society for Music Information Retrieval Conference (ISMIR 2016), Aug 2016, New York, United States
Conference papers hal-01331551v1
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Indexer un ensemble de séquences ADN annotées

Tatiana Rocher , Mathieu Giraud , Mikael Salson
JOBIM, Jun 2016, Lyon, France
Conference papers hal-01576319v1

Perfect Hashing Structures for Parallel Similarity Searches

Tuan Tu Tran , Mathieu Giraud , Jean-Stéphane Varré
International Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015), 2015, Hyderabad, India. pp.332-341, ⟨10.1109/IPDPSW.2015.105⟩
Conference papers hal-01153893v1
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Comparing Voice and Stream Segmentation Algorithms

Nicolas Guiomard-Kagan , Mathieu Giraud , Richard Groult , Florence Levé
International Society for Music Information Retrieval Conference (ISMIR 2015), Oct 2015, Malaga, Spain. pp.493-499
Conference papers hal-01246693v1
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Modeling Musical Structure with Parametric Grammars

Mathieu Giraud , Sławek Staworko
Mathematics and Computation in Music (MCM 2015), Jun 2015, London, United Kingdom. pp.85-96, ⟨10.1007/978-3-319-20603-5_8⟩
Conference papers hal-01205422v1
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Modélisation et visualisation de schémas d'analyse musicale avec music21

Guillaume Bagan , Mathieu Giraud , Richard Groult , Emmanuel Leguy
Journées d'Informatique Musicale (JIM 2015), 2015, Montréal, Canada
Conference papers hal-01135118v1
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Vers une analyse automatique des formes sonates

Laurent David , Mathieu Giraud , Richard Groult , Florence Levé , Corentin Louboutin et al.
Journées d'Informatique Musicale (JIM 2014), 2014, Bourges, France. pp.113-118
Conference papers hal-01009166v1
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Towards Modeling Texture in Symbolic Data

Mathieu Giraud , Florence Levé , Florent Mercier , Marc Rigaudière , Donatien Thorez et al.
International Society for Music Information Retrieval Conference - ISMIR, 2014, Taipei, Taiwan. pp.59-64
Conference papers hal-01057017v1

Diagnostic et suivi des leucémies aiguës lymphoblastiques (LAL) par séquençage haut-débit (HTS)

Nathalie Grardel , Mikaël Salson , Aurélie Caillault , Marc Duez , Céline Villenet et al.
Congrès de la Société Française d'Hématologie (SFH), 2014, Paris, France
Conference papers hal-01100152v1
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Searching for alternate RNA structures in genomic sequences

Azadeh Saffarian , Mathieu Giraud , Hélène Touzet
Computational Methods for Structural RNAs, CMSR'14, Sep 2014, Strasbourg, France. pp.13-24, ⟨10.15455/CMSR.2014.0002⟩
Conference papers hal-01084319v1

Suivi de la leucémie résiduelle par séquençage haut-débit

Mathieu Giraud , Mikaël Salson , Marc Duez , Jean-Stéphane Varré , Céline Villenet et al.
JOBIM, Jul 2013, Toulouse, France
Conference papers hal-00857581v1
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Fragmentations with pitch, rhythm and parallelism constraints for variation matching

Mathieu Giraud , Ken Déguernel , Emilios Cambouropoulos
International Symposium on Computer Music Multidisciplinary Research (CMMR), Oct 2013, Marseille, France. pp.298-312, ⟨10.1007/978-3-319-12976-1_19⟩
Conference papers hal-00906462v2
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Melodic contour representations in the analysis of children's songs

Christina Anagnostopoulou , Mathieu Giraud , Nick Poulakis
3rd International Workshop on Folk Music Analysis, Jun 2013, Amsterdam, Netherlands. pp.40-43
Conference papers hal-00826427v1
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Subject and counter-subject detection for analysis of the Well-Tempered Clavier fugues

Mathieu Giraud , Richard Groult , Florence Levé
International Symposium on Computer Music Modelling and Retrieval (CMMR 2012), 2012, United Kingdom. pp.661-673
Conference papers hal-00712554v1
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Detecting Episodes with Harmonic Sequences for Fugue Analysis

Mathieu Giraud , Richard Groult , Florence Levé
ISMIR - International Society for Music Information Retrieval Conference - 2012, 2012, Porto, Portugal
Conference papers hal-00712565v1

biomanycores.org: a repository of interoperable open-source code for many-core bioinformatics

Jean-Frédéric Berthelot , Charles Deltel , Mathieu Giraud , Stéphane Janot , Laetitia Jourdan et al.
JOBIM 2011, Jul 2011, Paris, France
Conference papers hal-00637847v1
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Bit-Parallel Multiple Pattern Matching

Tuan Tu Tran , Mathieu Giraud , Jean-Stéphane Varré
Parallel Processing and Applied Mathematics / Parallel Biocomputing Conference (PPAM / PBC 11), 2011, Torun, Poland
Conference papers inria-00637227v1
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Rhythm extraction from polyphonic symbolic music

Florence Levé , Richard Groult , Guillaume Arnaud , Cyril Séguin , Rémi Gaymay et al.
12th International Society for Music Information Retrieval Conference (ISMIR 2011), Oct 2011, United States. pp.375-380
Conference papers hal-00636058v1
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Biomanycores, open-source parallel code for many-core bioinformatics

Mathieu Giraud , Stéphane Janot , Jean-Frédéric Berthelot , Charles Deltel , Laetitia Jourdan et al.
Bioinformatics Open Source Conference (BOSC 2011), 2011, Vienne, Austria
Conference papers inria-00623390v1
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The Number of Runs in a Ternary Word

Hideo Bannai , Mathieu Giraud , Kazuhiko Kusano , Wataru Matsubara , Ayumi Shinohara et al.
Prague Stringology Conference 2010, Aug 2010, France. pp.178-181
Conference papers hal-00533202v1
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GPU Parallelization of Algebraic Dynamic Programming

Peter Steffen , Robert Giegerich , Mathieu Giraud
Parallel Processing and Applied Mathematics / Parallel Biocomputing Conference (PPAM / PBC 09), Sep 2009, Wroclaw, Poland
Conference papers inria-00438219v1
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Parallel Position Weight Matrices Algorithms

Mathieu Giraud , Jean-Stéphane Varré
International Symposium on Parallel and Distributed Computing (ISPDC 2009), Jul 2009, Lisboa, Portugal. pp.65-69, ⟨10.1109/ISPDC.2009.31⟩
Conference papers inria-00438215v1

Biomanycores, a repository of interoperable open-source code for many-cores bioinformatics

Jean-Stéphane Varré , Stéphane Janot , Mathieu Giraud
Bioinformatics Open Source Conference (BOSC), Jun 2009, Stockholm, Sweden
Conference papers inria-00438224v1
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Not so many runs in strings

Mathieu Giraud
2nd International Conference on Language and Automata Theory and Applications (LATA 2008), Mar 2008, Tarragona, Spain
Conference papers inria-00271630v1
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Seed-Based Exclusion Method for Non-coding RNA Gene Search

Jean-Eudes Duchesne , Mathieu Giraud , Nadia El-Mabrouk
13th Annual International Computing and Combinatorics Conference (COCOON 2007), Jul 2007, Banff, Canada. pp.27-39, ⟨10.1007/978-3-540-73545-8_6⟩
Conference papers inria-00271642v1
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Protein similarity search with subset seeds on a dedicated reconfigurable hardware

Pierre Peterlongo , Laurent Noé , Dominique Lavenier , Gilles Georges , Julien Jacques et al.
Parallel Bio-Computing, Sep 2007, Gdansk,, Poland
Conference papers inria-00178325v1

Path-Equivalent Removal of Epsilon-Transitions

Dominique Lavenier , Philippe Veber , Mathieu Giraud
2006, pp.23--33, ⟨10.1007/11812128_4⟩
Conference papers hal-00107094v1
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Recherches de motifs et de similarités en bioinformatique : modélisations, solutions logicielles et matérielles

Mathieu Giraud , Laurent Noé , Gregory Kucherov , Dominique Lavenier
MajecSTIC 2005 : Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC, IRISA – IETR – LTSI, Nov 2005, Rennes/France, pp.18--37
Conference papers inria-00001036v1

Organisation modulaire des séquences d'ADN répétées: application à l'étude des hélitrons non-autonomes dans le génome d'Arabidopsis thaliana

Sébastien Tempel , Mathieu Giraud , Israël-César C. Lerman , Ivan Couée , Abdelhak El Amrani et al.
XIIIe colloque Eléments Transposables, 2005, Orsay, France
Conference papers hal-00015261v1

mreps: a program for exhaustive search for tandem repeats in DNA sequences

Ghizlane Bana , Roman Kolpakov , Mathieu Giraud , Ralph Rabbat , Gregory Kucherov et al.
Sixth Annual International Conference on Research in Computational Biology - RECOMB 2002, Apr 2002, Washington, DC, US
Conference papers inria-00100869v1
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Maximal Repetitions and Application to DNA sequences

Mathieu Giraud , Gregory Kucherov
Journées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'2000, 2000, Montpellier/France, pp.165--172
Conference papers inria-00107854v1
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One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic Leukemia

Patrick Villarese , Chrystelle Abdo , Matthieu Bertrand , Florian Thonier , Mathieu Giraud et al.
Anton W. Langerak. Immunogenetics. Methods and Protocols, 2453, Springer, pp.43-59, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_3⟩
Book sections hal-03684695v1
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Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic Leukemia

Anne Langlois de Septenville , Myriam Boudjoghra , Clotilde Bravetti , Marine Armand , Mikaël Salson et al.
Anton W. Langerak. Immunogenetics, 2453, Springer, pp.153-167, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_10⟩
Book sections hal-03684717v1

Computational Analysis of Musical Form

Mathieu Giraud , Richard Groult , Florence Levé
David Meredith. Computational Music Analysis, Springer, pp.113-136, 2016, 978-3-319-25929-1. ⟨10.1007/978-3-319-25931-4_5⟩
Book sections hal-01231201v1
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Manycore high-performance computing in bioinformatics

Jean-Stéphane Varré , Bertil Schmidt , Stéphane Janot , Mathieu Giraud
Laura Elnitski, Helen Piontkivska, Lonnie R Welch. Advances in Genomic Sequence Analysis and Pattern Discovery, World Scientific, chapter 8, 2011
Book sections hal-00563408v1

Filters and seeds approaches for fast homology searches in large datasets

Nadia Pisanti , Mathieu Giraud , Pierre Peterlongo
Mourad Elloumi and Albert Y. Zomaya. Algorithms in computational molecular biology, John Wiley & sons, 2010
Book sections inria-00425370v1

Bioinformatics Applications

Dominique Lavenier , Mathieu Giraud
Gokhale, Maya B., Graham, Paul S. Reconfigurable Computing. Accelerating Computation with Field-Programmable Gate Arrays, Springer, 2005, Foundation of computing, 0-387-26105-2
Book sections inria-00000501v1

Towards modeling alternating patterns through inter-notes relations

Perrine Vantalon , Mathieu Giraud , Richard Groult , Thierry Lecroq
International Society for Music Information Retrieval Conference (ISMIR 2022), Late-Breaking Demo Session, 2022, Bengalore, India. , pp.LV10
Conference poster hal-03951420v1
Image document

Towards Custom Dilated Convolutions on Pitch Spaces

Rony Abecidan , Mathieu Giraud , Gianluca Micchi
International Society for Music Information Retrieval Conference (ISMIR 2020), Late-Breaking Demo Session, 2020, Montréal, Canada. Extended Abstracts for the Late-Breaking Demo Session of the 21st Int. Society for Music Information Retrieval Conference
Conference poster hal-02959676v1

Modelling Keys and Modulation with Scales and Harmonic Progressions

Laurent Feisthauer , Louis Bigo , Mathieu Giraud , Florence Levé
Digital Music Research Network Workshop (DMRN+14), 2019, London, France
Conference poster hal-02392389v1

Vers une recherche automatisée du parcours tonal

Laurent Feisthauer , Louis Bigo , Mathieu Giraud , Florence Levé
Les sciences de la musique, 2019, Paris, France.
Conference poster hal-01972701v1
Image document

Using Dezrann in Musicology and MIR Research

Mathieu Giraud
Digital Libraries for Musicology (DLfM 2018), 2018, Paris, France
Conference poster hal-01871713v1
Image document

Une application web interactive pour l'analyse musicale

Emmanuel Leguy , Richard Groult , Mathieu Giraud
European Music Analysis Conference (EuroMAC 2017), 2017, Strasbourg, France. 2017
Conference poster hal-01517517v1

Multiclonal Diagnosis and MRD Follow-up in ALL with HTS Coupled with a Bioinformatic Analysis

Nathalie Grardel , Mathieu Giraud , Mikaël Salson , Marc Duez
American Society of Hematology Annual Meeting, 2014, San Francisco, France. , 2014
Conference poster hal-01100290v1
Image document

Compter les globules blancs, analyser les partitions

Mathieu Giraud
Informatique [cs]. Université de Lille 1 – Sciences et Technologies, 2016
Habilitation à diriger des recherches tel-01577763v1