Mathieu Giraud
Présentation
Mathieu Giraud, directeur de recherche CNRS en informatique au laboratoire CRIStAL (CNRS, Université de Lille, Centrale Lille), conçoit des méthodes algorithmiques pour étudier des séquences au service de projets culturels et de santé. Mathieu dirige l'équipe d'informatique musicale Algomus qui travaille sur l'analyse, la modélisation, la visualisation et la génération de musique. Est-ce qu'un ordinateur peut aider à faire comprendre et même à faire apprécier la musique ? Ces travaux en humanités numériques concernent la mélodie, l'harmonie (accords, progressions d'accords, cadences), les rythmes, la texture musicale, pour finalement modéliser la structure et la forme musicale et proposer de nouvelles manières d'interagir et de valoriser le patrimoine et le matrimoine musical. Mathieu a mené durant 15 ans des recherches sur l'analyse et la comparaison de séquences d'ADN et d'ARN, notamment dans l'équipe de bioinformatique Bonsai. Il continue de travailler sur des méthodes pour mieux connaître les populations de globules blancs, en particulier pour améliorer les diagnostics et les suivis de leucémie. Il est le responsable technique du consortium VidjilNet au sein d'Inria et s'intéresse à l'éthique des traitements de données médicales. Mathieu collabore avec des musicien·nes (artistes, enseignant·es, grand public...) ainsi qu'avec des professionnel·les de santé. Il s'inscrit dans une démarche de science ouverte, en particulier sur les logiciels libres, et contribue à des politiques locales et nationales sur l'inclusivité et sur le genre, ainsi que sur les transports publics.
Publications
Publications
Linking and Combining Digital Music Sources in Digital Archives: The CollabScore approachIAML 2026 - International Association of Music Libraries Congress, Aristotle University of Thessaloniki, Jun 2026, Thessalokini, Greece |
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Vers une taxonomie et une analyse des gestes guitaristiques dans le Brutal Death MetalJournées d'Informatique Musicale (JIM 2025), GRAME; Inria, Jun 2025, Lyon, France. pp.109-116 |
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Detection of orchestral blends in musical scoresSound and Music Computing (SMC 2025), 2025, Graz, Austria |
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When Voices Interleave: Timing Deviations in Six Performances of Telemann's Fantasias for Solo FluteInternational Society for Music Information Retrieval Conference (ISMIR 2025), Sep 2025, Daejeon, South Korea |
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Music with Numbers: Jianpu Number-Based Notation in Cultural Heritage and Digital HumanitiesMusic Encoding Conference (MEC 2025), 2025, London, United Kingdom |
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What song now? Personalized Rhythm Guitar Learning in Western Popular MusicInternational Society for Music Information Retrieval Conference (ISMIR 2025), 2025, Daejeon, South Korea |
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Suggestions pédagogiques personnalisées pour la guitareJournées d'Informatique Musicale (JIM 2024), May 2024, Marseille, France |
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Co-creative orchestration of Angeles with layer scores and orchestration plansInternational Conference on Artificial Intelligence in Music, Sound, Art and Design (EvoMUSART 2024), 2024, Aberystwyth, United Kingdom. ⟨10.1007/978-3-031-56992-0_15⟩ |
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The CollabScore project – From Optical Recognition to Multimodal Music SourcesWoRMS 2024: 6th International Workshop on Reading Music Systems, Jorge Calvo-Zaragoza; Alexander Pacha; Elona Shatri, Nov 2024, Online, France. pp.33-37, ⟨10.48550/arXiv.2411.15741⟩ |
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The Games We Play: Exploring The Impact of ISMIR on MusicologyInternational Society for Music Information Retrieval Conference (ISMIR 2023), Nov 2023, Milano, Italy. pp.474-481, ⟨10.5281/zenodo.10265344⟩ |
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Analyse et essai de reconstruction de structures arborescentes des grilles de jazzJournées d'Informatique Musicale (JIM 2023), May 2023, Paris, France. pp.62-67 |
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Adding descriptors to melodies improves pattern matching: a study on Slovenian folk songsInternational Society for Music Information Retrieval Conference (ISMIR 2023), 2023, Milan, Italy. pp.474-481, ⟨10.5281/zenodo.10265328⟩ |
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The ‘Measure Map’: an inter-operable standard for aligning symbolic musicInternational Conference on Digital Libraries for Musicology (DLfM 2023), Nov 2023, Milano, Italy. ⟨10.1145/3625135.3625136⟩ |
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Soutenir en classe l'écoute active, l'autonomie et l'échange en analyse musicale avec la plateforme web DezrannJournées d'Informatique Musicale (JIM 2022) / Sound and Music Computing (SMC 2022), 2022, Saint-Étienne, France. pp.617-623, ⟨10.5281/zenodo.6800855⟩ |
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Modeling and Editing Cross-Modal Synchronization on a Label Web CanvasMusic Encoding Conference (MEC 2022), 2022, Halifax, Canada. pp.61-71, ⟨10.17613/krxd-pq66⟩ |
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Personalizing AI for Co-Creative Music Composition from Melody to StructureSound and Music Computing (SMC 2022), 2022, Saint-Étienne, France. pp.314-321, ⟨10.5281/zenodo.6573287⟩ |
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A Corpus Describing Orchestral Texture in First Movements of Classical and Early-Romantic SymphoniesDigital Libraries for Musicology (DLfM 2022), 2022, Prague, Czech Republic. pp.22-35 |
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What are the most used guitar positions?International Conference on Digital Libraries for Musicology (DLfM 2021), 2021, Online, United Kingdom. pp.84-92, ⟨10.1145/3469013.3469024⟩ |
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Symbolic Textural Features and Melody/Accompaniment Detection in String QuartetsInternational Symposium on Computer Music Multidisciplinary Research (CMMR 2021), Nov 2021, Online, Japan. pp.175-184 |
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Estimating keys and modulations in musical piecesSound and Music Computing Conference (SMC 2020), Simone Spagnol; Andrea Valle, Jun 2020, Torino, Italy |
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Encodages de tablatures pour l'analyse de musique pour guitareJournées d'Informatique Musicale (JIM 2020), 2020, Strasbourg (en ligne), France |
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Modeling and learning structural breaks in sonata formsInternational Society for Music Information Retrieval Conference (ISMIR 2019), 2019, Delft, Netherlands. ⟨10.5281/zenodo.3527828⟩ |
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Realtime collaborative annotation of music scores with DezrannInternational Symposium on Computer Music Modeling and Retrieval (CMMR 2019), 2019, Marseille, France |
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L'informatique musicale : informatique et musique en interdisciplinaritéJournées d'Informatique Musicale (JIM 2019), May 2019, Bayonne, France |
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Génération photo-réaliste de défauts sur des images de surfaces extérieures d'avions acquises par un drone autonomeORASIS, journées francophones des jeunes chercheurs en vision par ordinateur, May 2019, Saint-Dié-des-Vosges, France |
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Relevance of musical features for cadence detectionInternational Society for Music Information Retrieval Conference (ISMIR 2018), 2018, Paris, France |
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Dezrann, a Web Framework to Share Music AnalysisInternational Conference on Technologies for Music Notation and Representation (TENOR 2018), May 2018, Montréal, Canada. pp.104-110 |
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Sketching Sonata Form Structure in Selected Classical String QuartetsISMIR 2017 - International Society for Music Information Retrieval Conference, 2017, Suzhou, China |
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Les pierres musicales, un dispositif pédagogique interactifJournées d'Informatique Musicale (JIM 2017), 2017, Paris, France |
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Indexer un ensemble de séquences ADN annotéesJOBIM, Jun 2016, Lyon, France |
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Improving voice separation by better connecting contigsInternational Society for Music Information Retrieval Conference (ISMIR 2016), Aug 2016, New York, United States |
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Comparing Voice and Stream Segmentation AlgorithmsInternational Society for Music Information Retrieval Conference (ISMIR 2015), Oct 2015, Malaga, Spain. pp.493-499 |
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Modeling Musical Structure with Parametric GrammarsMathematics and Computation in Music (MCM 2015), Jun 2015, London, United Kingdom. pp.85-96, ⟨10.1007/978-3-319-20603-5_8⟩ |
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Modélisation et visualisation de schémas d'analyse musicale avec music21Journées d'Informatique Musicale (JIM 2015), 2015, Montréal, Canada |
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Perfect Hashing Structures for Parallel Similarity SearchesInternational Workshop on High Performance Computational Biology (HiCOMB 2015) / International Parallel and Distributed Processing Symposium (IPDPS 2015), 2015, Hyderabad, India. pp.332-341, ⟨10.1109/IPDPSW.2015.105⟩ |
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Fragmentations with pitch, rhythm and parallelism constraints for variation matchingInternational Symposium on Computer Music Multidisciplinary Research (CMMR), Oct 2013, Marseille, France. pp.298-312, ⟨10.1007/978-3-319-12976-1_19⟩ |
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Vers une analyse automatique des formes sonatesJournées d'Informatique Musicale (JIM 2014), 2014, Bourges, France. pp.113-118 |
Diagnostic et suivi des leucémies aiguës lymphoblastiques (LAL) par séquençage haut-débit (HTS)Congrès de la Société Française d'Hématologie (SFH), 2014, Paris, France |
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Towards Modeling Texture in Symbolic DataInternational Society for Music Information Retrieval Conference - ISMIR, 2014, Taipei, Taiwan. pp.59-64 |
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Searching for alternate RNA structures in genomic sequencesComputational Methods for Structural RNAs, CMSR'14, Sep 2014, Strasbourg, France. pp.13-24, ⟨10.15455/CMSR.2014.0002⟩ |
Suivi de la leucémie résiduelle par séquençage haut-débitJOBIM, Jul 2013, Toulouse, France |
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Melodic contour representations in the analysis of children's songs3rd International Workshop on Folk Music Analysis, Jun 2013, Amsterdam, Netherlands. pp.40-43 |
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Subject and counter-subject detection for analysis of the Well-Tempered Clavier fuguesInternational Symposium on Computer Music Modelling and Retrieval (CMMR 2012), 2012, United Kingdom. pp.661-673 |
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Detecting Episodes with Harmonic Sequences for Fugue AnalysisISMIR - International Society for Music Information Retrieval Conference - 2012, 2012, Porto, Portugal |
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Biomanycores, open-source parallel code for many-core bioinformaticsBioinformatics Open Source Conference (BOSC 2011), 2011, Vienne, Austria |
biomanycores.org: a repository of interoperable open-source code for many-core bioinformaticsJOBIM 2011, Jul 2011, Paris, France |
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Rhythm extraction from polyphonic symbolic music12th International Society for Music Information Retrieval Conference (ISMIR 2011), Oct 2011, United States. pp.375-380 |
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Bit-Parallel Multiple Pattern MatchingParallel Processing and Applied Mathematics / Parallel Biocomputing Conference (PPAM / PBC 11), 2011, Torun, Poland |
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The Number of Runs in a Ternary WordPrague Stringology Conference 2010, Aug 2010, France. pp.178-181 |
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GPU Parallelization of Algebraic Dynamic ProgrammingParallel Processing and Applied Mathematics / Parallel Biocomputing Conference (PPAM / PBC 09), Sep 2009, Wroclaw, Poland |
Biomanycores, a repository of interoperable open-source code for many-cores bioinformaticsBioinformatics Open Source Conference (BOSC), Jun 2009, Stockholm, Sweden |
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Parallel Position Weight Matrices AlgorithmsInternational Symposium on Parallel and Distributed Computing (ISPDC 2009), Jul 2009, Lisboa, Portugal. pp.65-69, ⟨10.1109/ISPDC.2009.31⟩ |
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Not so many runs in strings2nd International Conference on Language and Automata Theory and Applications (LATA 2008), Mar 2008, Tarragona, Spain |
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Protein similarity search with subset seeds on a dedicated reconfigurable hardwareParallel Bio-Computing, Sep 2007, Gdansk,, Poland |
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Seed-Based Exclusion Method for Non-coding RNA Gene Search13th Annual International Computing and Combinatorics Conference (COCOON 2007), Jul 2007, Banff, Canada. pp.27-39, ⟨10.1007/978-3-540-73545-8_6⟩ |
Path-Equivalent Removal of Epsilon-Transitions2006, pp.23--33, ⟨10.1007/11812128_4⟩ |
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Recherches de motifs et de similarités en bioinformatique : modélisations, solutions logicielles et matériellesMajecSTIC 2005 : Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC, IRISA – IETR – LTSI, Nov 2005, Rennes/France, pp.18--37 |
Organisation modulaire des séquences d'ADN répétées: application à l'étude des hélitrons non-autonomes dans le génome d'Arabidopsis thalianaXIIIe colloque Eléments Transposables, 2005, Orsay, France |
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mreps: a program for exhaustive search for tandem repeats in DNA sequencesSixth Annual International Conference on Research in Computational Biology - RECOMB 2002, Apr 2002, Washington, DC, US |
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Maximal Repetitions and Application to DNA sequencesJournées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'2000, 2000, Montpellier/France, pp.165--172 |
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One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic LeukemiaAnton W. Langerak. Immunogenetics. Methods and Protocols, 2453, Springer, pp.43-59, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_3⟩ |
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Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic LeukemiaAnton W. Langerak. Immunogenetics, 2453, Springer, pp.153-167, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_10⟩ |
Computational Analysis of Musical FormDavid Meredith. Computational Music Analysis, Springer, pp.113-136, 2016, 978-3-319-25929-1. ⟨10.1007/978-3-319-25931-4_5⟩ |
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Manycore high-performance computing in bioinformaticsLaura Elnitski, Helen Piontkivska, Lonnie R Welch. Advances in Genomic Sequence Analysis and Pattern Discovery, World Scientific, chapter 8, 2011 |
Bioinformatics ApplicationsGokhale, Maya B., Graham, Paul S. Reconfigurable Computing. Accelerating Computation with Field-Programmable Gate Arrays, Springer, 2005, Foundation of computing, 0-387-26105-2 |
Les Pixelles, un club d'informatique pour collégiennes et lycéennesDidapro 11, Mar 2026, Grenoble, France |
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Towards Cross-Cultural Modelling of Instrumental DifficultyDigital Music Research Network One-day Workshop (DMRN+20), 2025, London, United Kingdom. |
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Modelling Flute Difficulty through a Corpus of Annotated ScoresDigital Libraries for Musicology (DLfM 2025), Sep 2025, Seoul, South Korea. |
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Towards modeling alternating patterns through inter-notes relations23rd International Society for Music Information Retrieval Conference (ISMIR 2022), Late-Breaking Demo Session, Dec 2022, Bangalore, India. , pp.LV10 |
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Towards Custom Dilated Convolutions on Pitch SpacesInternational Society for Music Information Retrieval Conference (ISMIR 2020), Late-Breaking Demo Session, 2020, Montréal, Canada. Extended Abstracts for the Late-Breaking Demo Session of the 21st Int. Society for Music Information Retrieval Conference |
Modelling Keys and Modulation with Scales and Harmonic ProgressionsDigital Music Research Network Workshop (DMRN+14), 2019, London, France |
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Vers une recherche automatisée du parcours tonalLes sciences de la musique, 2019, Paris, France. |
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Using Dezrann in Musicology and MIR ResearchDigital Libraries for Musicology (DLfM 2018), 2018, Paris, France |
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Une application web interactive pour l'analyse musicaleEuropean Music Analysis Conference (EuroMAC 2017), 2017, Strasbourg, France. 2017 |
Multiclonal Diagnosis and MRD Follow-up in ALL with HTS Coupled with a Bioinformatic AnalysisAmerican Society of Hematology Annual Meeting, 2014, San Francisco, France. , 2014 |
Interaction avec des corpus musicaux : la plateforme Dezrann2025 |
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Towards Detecting Interleaved Voices in Telemann Flute FantasiasDMRN+19: Digital Music Research Network One-day Workshop, 2024 |
From local markers to global form: Computational modeling of musical structure2021 |
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As We Are BlindŒuvres et Recherches, 2019, pp.2019:01 |
Algo-RythmeŒuvres et Recherches, 2019, pp.2019:05 |
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Fixing the Horse before the Cart: Reconstructing the Genesis of Classical Forms through Big Data and Computational Methods2018 |
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A dataset of sequences with manually curated V(D)J designations2016 |
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Establishing a national research software award2023 |
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What does the Mongeau-Sankoff algorithm compute?2019 |
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Compter les globules blancs, analyser les partitionsInformatique [cs]. Université de Lille 1 – Sciences et Technologies, 2016 |
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“Software and source codes” College: Minutes from the work session, November 30th 2023Comité pour la Science Ouverte. 2024 |
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Highlights of the "Software Pillar of Open Science" workshopComité pour la Science Ouverte. 2024 |
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Médiation Scientifique : une facette de nos métiers de la recherche[Interne] Inria. 2013, pp.34 |
DezrannLogiciel hal-04434328v1 |
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VidjilLogiciel hal-04453057v1 |