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Matthieu Montes

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UDock2 : interactive real-time multi-body protein–protein docking software

Cyprien Plateau-Holleville , Simon Guionnière , Benjamin Boyer , Brian Jiménez-Garcia , Guillaume Levieux
Bioinformatics, 2023, 39 (10), pp.btad609. ⟨10.1093/bioinformatics/btad609⟩
Journal articles hal-04356674v1
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Predicting Potential Endocrine Disrupting Chemicals Binding to Estrogen Receptor α (ERα) Using a Pipeline Combining Structure-Based and Ligand-Based in Silico Methods

Asma Sellami , Matthieu Montes , Nathalie Lagarde
International Journal of Molecular Sciences, 2021, 22 (6), pp.2846. ⟨10.3390/ijms22062846⟩
Journal articles hal-03454597v1
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High-Resolution Mining of SARS-CoV-2 Main Protease Conformational Space: Supercomputer-Driven Unsupervised Adaptive Sampling

Théo Jaffrelot Inizan , Frederic Célerse , Olivier Adjoua , Dina El Ahdab , Luc-Henri Jolly
Chemical Science, 2021, 12 (13), pp.4889-4907. ⟨10.1039/D1SC00145K⟩
Journal articles hal-02943694v1
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Neuropilin 1 and Neuropilin 2 gene invalidation or pharmacological inhibition reveals their relevance for the treatment of metastatic renal cell carcinoma

Aurore Dumond , Etienne Brachet , Jérôme Durivault , Valérie Vial , Anna Puszko
Journal of experimental & clinical cancer research, 2021, 40, pp.33. ⟨10.1186/s13046-021-01832-x⟩
Journal articles hal-03132345v1
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Comparative evaluation of shape retrieval methods on macromolecular surfaces: an application of computer vision methods in structural bioinformatics

Mohamed Machat , Florent Langenfeld , Daniela Craciun , Léa Sirugue , Taoufik Labib
Bioinformatics, 2021, 37 (23), pp.4375-4382. ⟨10.1093/bioinformatics/btab511⟩
Journal articles hal-03560225v1
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SHREC 2020: multi-domain protein shape retrieval challenge

Florent Langenfeld , Yuxu Peng , Yu-Kun Lai , Paul L. Rosin , Tunde Aderinwale
Computers and Graphics, 2020, 91, pp.189-198. ⟨10.1016/j.cag.2020.07.013⟩
Journal articles hal-03321566v1
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Hits Discovery on the Androgen Receptor: In Silico Approaches to Identify Agonist Compounds

Manon Réau , Nathalie Lagarde , Jean-François Zagury , Matthieu Montes
Cells, 2019, 8 (11), pp.1431. ⟨10.3390/cells8111431⟩
Journal articles hal-03454453v1
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New CXCR1/CXCR2 inhibitors represent an effective treatment for kidney or head and neck cancers sensitive or refractory to reference treatments

Maeva Dufies , Oleksandr Grytsai , Cyril Ronco , Oumar Camara , Damien Ambrosetti
Theranostics, 2019, 9 (18), pp.5332-5346. ⟨10.7150/thno.34681⟩
Journal articles hal-02308756v1

New selective cyclooxygenase-2 inhibitors from cyclocoumarol: Synthesis, characterization, biological evaluation and molecular modeling

Anita Marie Rayar , Nathalie Lagarde , Frédérique Martin , Florent Blanchard , Bertrand Liagre
European Journal of Medicinal Chemistry, 2018, 146, pp.577-587. ⟨10.1016/j.ejmech.2018.01.054⟩
Journal articles hal-02453627v1
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Update on COX-2 Selective Inhibitors: Chemical Classification, Side Effects and their Use in Cancers and Neuronal Diseases

Anita Maria Rayar , Nathalie Lagarde , C. Ferroud , Jean-François Zagury , Matthieu Montes
Current Topics in Medicinal Chemistry, 2017, 17 (26), ⟨10.2174/1568026617666170821124947⟩
Journal articles hal-01599103v1
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Identification of an in vivo orally active dual-binding protein-protein interaction inhibitor targeting TNFα through combined in silico/in vitro/in vivo screening

Hadley Mouhsine , Hélène Guillemain , Gabriel Moreau , Najla Fourati , Chouki Zerrouki
Scientific Reports, 2017, 7 (1), pp.3424. ⟨10.1038/s41598-017-03427-z⟩
Journal articles hal-01679350v1

Predictiveness curves in virtual screening

Charly Empereur-Mot , Hélène Guillemain , Aurélien Latouche , Jean-François Zagury , Vivian Viallon
Journal of Cheminformatics, 2015, 7 (1), pp.52. ⟨10.1186/s13321-015-0100-8⟩
Journal articles hal-01808396v1

Synthesis and structure–activity relationship of non-peptidic antagonists of neuropilin-1 receptor

Wang-Qing Liu , Valentino Megale , Lucia Borriello , Bertrand Leforban , Matthieu Montes
Bioorganic and Medicinal Chemistry Letters, 2014, 24 (17), pp.4254-4259. ⟨10.1016/j.bmcl.2014.07.028⟩
Journal articles hal-02126861v1

1,2,4-Oxadiazoles Identified by Virtual Screening and their Non-Covalent Inhibition of the Human 20S Proteasome

X. Maréchal , E. Genin , L. Qin , O. Sperandio , M. Montes
Current Medicinal Chemistry, 2013, 20 (18), pp.2351 - 2362. ⟨10.2174/0929867311320180006⟩
Journal articles hal-01408236v1

Genomewide Association Study of a Rapid Progression Cohort Identifies New Susceptibility Alleles for AIDS (ANRS Genomewide Association Study 03)

Sigrid Le Clerc , Sophie Limou , Cédric Coulonges , Wassila Carpentier , Christian Dina
Journal of Infectious Diseases, 2009, 200 (8), pp.1194-1201. ⟨10.1086/605892⟩
Journal articles hal-02566721v1

Genomewide Association Study of an AIDS‐Nonprogression Cohort Emphasizes the Role Played by HLA Genes (ANRS Genomewide Association Study 02)

Sophie Limou , Sigrid Le Clerc , Cédric Coulonges , Wassila Carpentier , Christian Dina
Journal of Infectious Diseases, 2009, 199 (3), pp.419-426. ⟨10.1086/596067⟩
Journal articles hal-02566791v1

Novel Organic Proteasome Inhibitors Identified by Virtual and in Vitro Screening

Basse Nicolas , Matthieu Montes , Xavier Maréchal , Lixian Qin , Michelle Bouvier-Durand
Journal of Medicinal Chemistry, 2009, 53 (1), pp.509-513. ⟨10.1021/jm9011092⟩
Journal articles hal-00842659v1

FAF-Drugs: free ADME/tox filtering of compound collections

Maria A. Miteva , Stephanie Violas , Matthieu Montes , David Gomez , Pierre Tuffery
Nucleic Acids Research, 2006, 34, pp.w738-w744
Journal articles inserm-00106930v1

Design, synthesis, and biological evaluation of novel naphthoquinone derivatives with CDC25 phosphatase inhibitory activity.

Marie-Priscille Brun , Emmanuelle Braud , Delphine Angotti , Odile Mondésert , Muriel Quaranta
Bioorganic and Medicinal Chemistry, 2005, 13 (16), pp.4871-9. ⟨10.1016/j.bmc.2005.05.005⟩
Journal articles hal-00317419v1

VTX: High-performance molecular structure and dynamics visualization software

Maxime Maria , Simon Guionnière , Nicolas Dacquay , Yassine Naïmi , Jean-Philip Piquemal
8th chemoinformatics Strasbourg summer school, Jun 2022, Strasbourg, France
Conference papers hal-03778760v1

Predicting Ligand Binding to Nuclear Receptors Using a Pipeline Combining Docking and Pharmacophore Models

Asma Sellami , Matthieu Montes , Nathalie Lagarde
8th Chemoinformatics Strasbourg Summer School, Jun 2022, Strasbourg, France
Conference papers hal-03778832v1

Immersive sonification of protein surface

Tifanie Bouchara Bouchara , Matthieu Montes
2020 IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops (VRW), Mar 2020, Atlanta, United States. pp.380-383, ⟨10.1109/VRW50115.2020.00082⟩
Conference papers hal-02922706v1
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Sonification Immersive de la Surface de Protéines

Tifanie Bouchara Bouchara , Valère Raigneau , Matthieu Montes
30eme conférence francophone sur l'interaction homme-machine, Oct 2018, Brest, France
Conference papers hal-01899165v1
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Surface Acoustic Wave Biosensors for the Quantification of TNF-α/SPD-304 Interaction

Gabriel Moreau , Najla Fourati , C. Zerrouki , Hadley Mouhsine , Matthieu Montes
Eurosensor 2016, Sep 2016, Budapest, Hungary. pp.432-435, ⟨10.1016/j.proeng.2016.11.537⟩
Conference papers hal-01679376v1
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Towards Real-Time Interactive Visualization Modes of Molecular Surfaces: Examples with Udock

Guillaume Levieux , Matthieu Montes
IEEE VR 2015 workshop on Virtual and Augmented Reality dedicated to Molecular Science (VARMS), Mar 2015, Arles, France. ⟨10.1109/VARMS.2015.7151723⟩
Conference papers hal-01126603v1

Udock, the interactive docking entertainment system

Guillaume Levieux , Guillaume Tiger , Stéphanie Mader , Jean-François Zagury , Stéphane Natkin
Faraday Discussions, May 2014, Nottingham, France. pp.425-441
Conference papers hal-01126514v1