Manish Kushwaha
Publications
Publications
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Intercellular DNA Communication for Bio-Computation in Synthetic Bacterial ConsortiaSynthetic Biology: Engineering, Evolution, & Design Meeting (SEED 2025), Society for Biological Engineering (SBE), American Institute of Chemical Engineers (AIChE), Jun 2025, Houston, TX, United States |
Bacterial multi-cellular computing using intercellular DNA communicationFEMS MICRO Milan 2025, Federation of European Microbiological Societies, Jul 2025, Milan, Italy |
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Building multicellular bacterial circuits using phages for communicationGlobal Open Genetic Engineering Competition 2024, Feb 2024, Online, United States |
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Synthetic Multi-cellular Circuits in Bacteria Using Engineered Phages for Cell-to-Cell CommunicationSynthetic Biology Young Speaker Series (SynBYSS), Sep 2024, Online, United States |
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Multi-cellular Circuits in Bacteria Using Engineered Phages for Synthetic Cell-to-Cell CommunicationSymposium on Synthetic and Systems Biology 2024 (BioSynSys), Jun 2024, Montpellier, France |
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Information processing circuits in cell-free systems: beyond gene expression regulationInternational Conference on Engineering Synthetic Cells and Organelles, May 2023, Minneapolis, MN, USA, United States |
Synthetic Multi-cellular Circuits in Bacteria Using Engineered Phages for Cell-to-Cell CommunicationSynthetic Biology UK 2023, Biochemical Society, Nov 2023, Bristol, United Kingdom |
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Exonuclease-deficient cellular extracts for cell-free expression from linear DNA templatesBuild-a-Cell seminar series (online), Aug 2022, online, United States |
Designing synthetic intercellular communication in bacterial culturesAssises du département MICA, May 2022, Biarritz, France |
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The Thinking Dead: using cell-free systems for decision-making circuitsInternational Genetic Engineering Machine (iGEM) French Meetup 2021, 9 French iGEM teams 2021, Sep 2021, Paris (online), France |
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Bacteriophages for intercellular communication in bacterial culturesSéminaire Bioss, Dec 2021, Online, France |
The Galaxy-SynBioCAD portal: tools and workflows for synthetic biology and metabolic engineeringJournées du PEPI IBIS 2021, Nov 2021, Toulouse, France |
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Biological Design and Engineering By and For machine LearningEngineering, Evolution & Design (SEED), AICHE, Jun 2021, Vitual, United States |
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Distributed Computation with Continual Population GrowthDISC 2020 - 34th International Symposium on DIStributed Computing, 2020, virtual, Germany. p. 1-17, ⟨10.4230/LIPIcs.DISC.2020.6⟩ |
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Tutorial On Computing In Synthetic BiologyCELLS: Workshop on Computing among Cells 2019, International Symposium on DIStributed Computing (DISC), Oct 2019, Budapast, Hungary |
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Metabolic Perceptrons for Neural Computing in Cell Free SystemsAIChE Cell Free Systems Conference, American Institute of Chemical Engineers (AIChE), Dec 2019, Boston (MA), United States |
Exploiting bacteriophage-derived signals as external wires for biological computingHighly Constrained Discrete Agents for Modeling Natural Systems, Working Group HicDiesMeus, Nov 2018, Paris, France |
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An M13 phagemid toolbox for engineering tuneable DNA communication in bacterial consortia2025 |
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Phage-mediated intercellular CRISPRi for biocomputation in bacterial consortia2024 |
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A synthetic communication system uncovers extracellular immunity that self-limits bacteriophage transmission2022 |
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Reaching Agreement in Competitive Microbial Systems2022 |
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Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides2023 |
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Cell-Free Biosensors and AI integrationCell-Free Gene Expression, 2433, Springer US, pp.303-323, 2022, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1998-8_19⟩ |
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Digital Circuit Design for Biological and Silicon ComputersAdvances in Synthetic Biology, Springer Singapore, pp.153-171, 2020, ⟨10.1007/978-981-15-0081-7_9⟩ |
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Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic EngineeringJOBIM 2022, Jul 2022, Rennes, France. |
Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic EngineeringGlobal BioFoundries Alliance Meeting 2022 (GBA2022), Oct 2022, Montréal, Canada |
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Galaxy-SynBioCAD: tools and automated pipelines for Synthetic Biology Design and Metabolic EngineeringBioSynSys 2022, Sep 2022, Paris, France. |
Metabolic Perceptrons for Neural Computing in Biological Systems.EMBO workshop “Creating is Understanding: Synthetic Biology Masters Complexity, Sep 2019, Heildelberg, Germany |
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TbISWI and its role in transcriptional control in <em>Trypanosoma brucei</em>Life Sciences [q-bio]. University of Oxford, 2010. English. ⟨NNT : ⟩ |
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Computational analysis of <em>Entamoeba histolytica</em> genome- Exploring junk DNA for hidden messagesLife Sciences [q-bio]. 2006 |