Matthias BENOIT

Chargé de Recherche à INRAE
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Libre accès
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Présentation

My research program aims at understanding the genetic and epigenetic mechanisms involved in plant-microbe symbioses. Using development, genetics, genomics, epigenomics, and gene editing approaches, I explore the contribution of structural and epigenetic variation to nodule development in legumes, focusing on providing innovative methods and tools for improving nitrogen-fixing symbioses.


Compétences

Epigenetics Chromatin Biology DNA Methylation Histone Modifications Non-coding RNAs Transposable Elements Plant-Microbe Interactions

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Publications

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Solanum pan-genetics reveals paralogues as contingencies in crop engineering

Matthias Benoit , Katharine Jenike , James Satterlee , Srividya Ramakrishnan , Iacopo Gentile et al. Article dans une revue hal-04998577v1
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Convergent evolution of plant prickles by repeated gene co-option over deep time

James Satterlee , David Alonso , Pietro Gramazio , Katharine Jenike , Jia He et al.

Science, 2024, 385 (6708), pp.eado1663. ⟨10.1126/science.ado1663⟩

Article dans une revue hal-04818802v1

Epigenetic control during root development and symbiosis

María Eugenia Zanetti , Flavio Blanco , Milagros Ferrari , Federico Ariel , Matthias Benoit et al.

Plant Physiology, 2024, 196, pp.697-710. ⟨10.1093/plphys/kiae333⟩

Article dans une revue hal-04646016v1
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Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome

Jia He , Michael Alonge , Srividya Ramakrishnan , Matthias Benoit , Sebastian Soyk et al.

The Plant cell, 2023, 35, pp.351-368. ⟨10.1093/plcell/koac305⟩

Article dans une revue hal-03853646v1

Four to the floor: Active DNA demethylation defines somatic epigenetic patterns and impacts quantitative traits

Matthias Benoit

The Plant cell, 2022, 34 (4), pp.1149 - 1150. ⟨10.1093/plcell/koac003⟩

Article dans une revue hal-04171747v1

From non-self to self: stepwise mutations in transcription factors promote the transition to self-pollination in tomato

Matthias Benoit

The Plant cell, 2021, 33 (10), pp.3183 - 3184. ⟨10.1093/plcell/koab200⟩

Article dans une revue hal-04171741v1

Hot ‘n cold: Applying the cis-regulatory code to predict heat and cold stress response in maize

Matthias Benoit

The Plant cell, 2021, 34 (1), pp.497 - 498. ⟨10.1093/plcell/koab269⟩

Article dans une revue hal-04171746v1

The right dose: molecular compensation maintains rRNA homeostasis upon reduction of ribosomal gene dosage in Arabidopsis

Matthias Benoit

The Plant cell, 2021, 33 (4), pp.1089-1090. ⟨10.1093/plcell/koab019⟩

Article dans une revue hal-04171740v1

Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit

Xingang Wang , Lyndsey Aguirre , Daniel Rodríguez-Leal , Anat Hendelman , Matthias Benoit et al.

Nature Plants, 2021, 7 (4), pp.419 - 427. ⟨10.1038/s41477-021-00898-x⟩

Article dans une revue hal-04171669v1

Glyphosate Resistance Decoded: The Reference Sequence of the Extrachromosomal DNA Replicon in Amaranth

Matthias Benoit

The Plant cell, 2020, 32 (7), pp.2059 - 2060. ⟨10.1105/tpc.20.00339⟩

Article dans une revue hal-04171708v1

On the Importance of Variation: A High-Resolution Map of Copy Number Variants in Arabidopsis

Matthias Benoit

The Plant cell, 2020, 32 (6), pp.1771 - 1772. ⟨10.1105/tpc.20.00257⟩

Article dans une revue hal-04171705v1
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Shooting for the STARRs: A Modified STARR-seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves

Matthias Benoit

The Plant cell, 2020, 32 (7), pp.2057 - 2058. ⟨10.1105/tpc.20.00392⟩

Article dans une revue hal-04171724v1

The Great Escape: How a Plant DNA Virus Hijacks an Imprinted Host Gene to Avoid Silencing

Matthias Benoit

The Plant cell, 2020, 32 (10), pp.3051 - 3052. ⟨10.1105/tpc.20.00631⟩

Article dans une revue hal-04171732v1

New Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation

Sebastian Soyk , Matthias Benoit , Zachary B Lippman

Annual Review of Genetics, 2020, 54 (1), pp.287-307. ⟨10.1146/annurev-genet-050720-⟩

Article dans une revue hal-04171651v1

Slice and Dice: DCL2 Mediates the Production of 22-Nucleotide siRNAs that Influence Trait Variation in Soybean

Matthias Benoit

The Plant cell, 2020, 32 (12), pp.3646 - 3647. ⟨10.1105/tpc.20.00884⟩

Article dans une revue hal-04171735v1
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In the Transcripts: Long-Read Transcriptomics Enables a Novel Type of Transposable Element Annotation in Plants

Matthias Benoit

The Plant cell, 2020, 32 (9), pp.2661 - 2662. ⟨10.1105/tpc.20.00523⟩

Article dans une revue hal-04171728v1

Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato

Michael Alonge , Xingang Wang , Matthias Benoit , Sebastian Soyk , Lara Pereira et al.

Cell, 2020, 182 (1), pp.145-161.e23. ⟨10.1016/j.cell.2020.05.021⟩

Article dans une revue hal-02927024v1
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Environmental and epigenetic regulation of Rider retrotransposons in tomato

Matthias Benoit , Hajk-Georg Drost , Marco Catoni , Quentin Gouil , Sara Lopez-Gomollon et al.

PLoS Genetics, 2019, 15 (9), pp.e1008370. ⟨10.1371/journal.pgen.1008370⟩

Article dans une revue hal-04171612v1
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Sensitive detection of pre-integration intermediates of LTR retrotransposons in crop plants

Jungnam Cho , Matthias Benoit , Marco Catoni , Hajk-Georg Drost , Anna Brestovitsky et al.

Nature Plants, 2019, 5 (1), pp.26-33. ⟨10.1038/s41477-018-0320-9⟩

Article dans une revue hal-04171191v1
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Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development

Matthias Benoit , Lauriane Simon , Sophie Desset , Céline Duc , Sylviane Cotterell et al.

New Phytologist, 2018, 221 (1), pp.385 - 398. ⟨10.1111/nph.15248⟩

Article dans une revue hal-04170933v1

Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development

Matthias Benoit , Lauriane Simon , Sophie Desset , Céline Duc , Sylviane Cotterell et al.

New Phytologist, 2018, ⟨10.1111/nph.15248⟩

Article dans une revue hal-01919943v1
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The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants

Axel Poulet , Ceíine Duc , Maxime Voisin , Sophie Desset , Sylvie Tutois et al.

Journal of Cell Science, 2017, 130 (3), pp.590-601. ⟨10.1242/jcs.194712⟩

Article dans une revue inserm-01629338v1

Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression

Céline Duc , Matthias Benoit , Gwénaëlle Détourné , Lauriane Simon , Axel Poulet et al.

The Plant cell, 2017, 29 (7), pp.1773 - 1793. ⟨10.1105/tpc.16.00877⟩

Article dans une revue hal-01919975v1

The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants

Céline Duc , Matthias Benoit , Samuel Le Goff , Lauriane Simon , Axel Poulet et al.

The Plant Journal, 2015, 81 (5), pp.707 - 722. ⟨10.1111/tpj.12758⟩

Article dans une revue hal-01919996v1

Epigenetic mechanisms regulate transcription of symbiotic islands during nodule development

Arnaud Biasotto-Carrere , Agnès Lepage , Andreas Niebel , Matthias Benoit

European Nitrogen Fixation Conference, Aug 2023, Naples, Italy

Communication dans un congrès hal-05162520v1

Impact of structural and epigenetic variation on quantitative traits during tomato improvement

Matthias Benoit

Fous de la tomate, May 2023, Sophia Antipolis, France

Communication dans un congrès hal-05162548v1

Impact of structural and epigenetic variation on quantitative traits during tomato domestication

Matthias Benoit , Jason Gardiner , Colette Picard , Xingang Wang , Michael Alonge et al.

LXV Annual Congress of the Italian Society of Agricultural Genetics (SIGA), Sep 2022, Piacenza, Italy

Communication dans un congrès hal-05162594v1

Contribution of Transposable Elements to Structural Variation and Phenotypic Adaptation in Tomato

Matthias Benoit , Michael Alonge , Xingang Wang , Florian Maumus , Hajk-Georg Drost et al.

Epigenetic Mechanisms of Crop Adaptation to Climate Change (EPI-CATCH), COST EPI-CATCH, Jul 2021, Virtual conference, United States

Communication dans un congrès hal-05163380v1

Contribution of Transposons to Structural Variation and Phenotypic Diversity in Tomato

Matthias Benoit , Michael Alonge , Xingang Wang , Florian Maumus , Hajk-Georg Drost et al.

EPIPLANT 2021, EPIPLANT GDR, Feb 2021, Virtual conference, France

Communication dans un congrès hal-05163401v1

Contribution of Transposons to Structural Variation and Phenotypic Diversity in Tomato

Matthias Benoit , Michael Alonge , Xingang Wang , Florian Maumus , Hajk-Georg Drost et al.

SOL International Meeting, Nov 2020, Virtual conference, United States

Communication dans un congrès hal-05163426v1
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Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics

Matthias Benoit

Agricultural sciences. Université Blaise Pascal - Clermont-Ferrand II, 2014. English. ⟨NNT : 2014CLF22497⟩

Thèse tel-01252520v1
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Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics

Matthias Benoit

Life Sciences [q-bio]. Université Blaise Pascal (Clermont Ferrand 2) (UBP), 2014. English. ⟨NNT : 2014CLF22497⟩

Thèse tel-04170909v1