Matthias BENOIT

Research Scientist

88%

Open access

Documents

Current affiliations

Researcher identifiers

matthias-benoit
IdRef : 184398665
0000-0002-3958-3173
Google Scholar : https://scholar.google.fr/citations?user=PmUvSH4AAAAJ

Contact

Presentation

Research domains

Skills

Genetics Epigenetics Molecular Biology Chromatin Biology Gene Regulation Microscopy 3D Genome Organization DNA Methylation Histone Modifications Non-coding RNAs Transposable Elements Plant-Microbe Interactions

Publications

	Epigenetic control during root development and symbiosis María Eugenia Zanetti , Flavio Blanco , Milagros Ferrari , Federico Ariel , Matthias Benoit Plant Physiology, 2024, ⟨10.1093/plphys/kiae333⟩ Journal articles hal-04646016v1
	Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome Jia He , Michael Alonge , Srividya Ramakrishnan , Matthias Benoit , Sebastian Soyk The Plant cell, 2022, ⟨10.1093/plcell/koac305⟩ Journal articles hal-03853646v1
	Four to the floor: Active DNA demethylation defines somatic epigenetic patterns and impacts quantitative traits Matthias Benoit The Plant cell, 2022, 34 (4), pp.1149 - 1150. ⟨10.1093/plcell/koac003⟩ Journal articles hal-04171747v1
	Hot ‘n cold: Applying the cis-regulatory code to predict heat and cold stress response in maize Matthias Benoit The Plant cell, 2021, 34 (1), pp.497 - 498. ⟨10.1093/plcell/koab269⟩ Journal articles hal-04171746v1
	From non-self to self: stepwise mutations in transcription factors promote the transition to self-pollination in tomato Matthias Benoit The Plant cell, 2021, 33 (10), pp.3183 - 3184. ⟨10.1093/plcell/koab200⟩ Journal articles hal-04171741v1
	Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit Xingang Wang , Lyndsey Aguirre , Daniel Rodríguez-Leal , Anat Hendelman , Matthias Benoit Nature Plants, 2021, 7 (4), pp.419 - 427. ⟨10.1038/s41477-021-00898-x⟩ Journal articles hal-04171669v1
	The right dose: molecular compensation maintains rRNA homeostasis upon reduction of ribosomal gene dosage in Arabidopsis Matthias Benoit The Plant cell, 2021, 33 (4), pp.1089-1090. ⟨10.1093/plcell/koab019⟩ Journal articles hal-04171740v1
	The Great Escape: How a Plant DNA Virus Hijacks an Imprinted Host Gene to Avoid Silencing Matthias Benoit The Plant cell, 2020, 32 (10), pp.3051 - 3052. ⟨10.1105/tpc.20.00631⟩ Journal articles hal-04171732v1
	Glyphosate Resistance Decoded: The Reference Sequence of the Extrachromosomal DNA Replicon in Amaranth Matthias Benoit The Plant cell, 2020, 32 (7), pp.2059 - 2060. ⟨10.1105/tpc.20.00339⟩ Journal articles hal-04171708v1
	On the Importance of Variation: A High-Resolution Map of Copy Number Variants in Arabidopsis Matthias Benoit The Plant cell, 2020, 32 (6), pp.1771 - 1772. ⟨10.1105/tpc.20.00257⟩ Journal articles hal-04171705v1
	Shooting for the STARRs: A Modified STARR-seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves Matthias Benoit The Plant cell, 2020, 32 (7), pp.2057 - 2058. ⟨10.1105/tpc.20.00392⟩ Journal articles hal-04171724v1
	In the Transcripts: Long-Read Transcriptomics Enables a Novel Type of Transposable Element Annotation in Plants Matthias Benoit The Plant cell, 2020, 32 (9), pp.2661 - 2662. ⟨10.1105/tpc.20.00523⟩ Journal articles hal-04171728v1
	Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato Michael Alonge , Xingang Wang , Matthias Benoit , Sebastian Soyk , Lara Pereira Cell, 2020, 182 (1), pp.145-161.e23. ⟨10.1016/j.cell.2020.05.021⟩ Journal articles hal-02927024v1
	Slice and Dice: DCL2 Mediates the Production of 22-Nucleotide siRNAs that Influence Trait Variation in Soybean Matthias Benoit The Plant cell, 2020, 32 (12), pp.3646 - 3647. ⟨10.1105/tpc.20.00884⟩ Journal articles hal-04171735v1
	New Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation Sebastian Soyk , Matthias Benoit , Zachary B Lippman Annual Review of Genetics, 2020, 54 (1), pp.287-307. ⟨10.1146/annurev-genet-050720-⟩ Journal articles hal-04171651v1
	Environmental and epigenetic regulation of Rider retrotransposons in tomato Matthias Benoit , Hajk-Georg Drost , Marco Catoni , Quentin Gouil , Sara Lopez-Gomollon PLoS Genetics, 2019, 15 (9), pp.e1008370. ⟨10.1371/journal.pgen.1008370⟩ Journal articles hal-04171612v1
	Sensitive detection of pre-integration intermediates of LTR retrotransposons in crop plants Jungnam Cho , Matthias Benoit , Marco Catoni , Hajk-Georg Drost , Anna Brestovitsky Nature Plants, 2019, 5 (1), pp.26-33. ⟨10.1038/s41477-018-0320-9⟩ Journal articles hal-04171191v1
	Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development Matthias Benoit , Lauriane Simon , Sophie Desset , Céline Duc , Sylviane Cotterell New Phytologist, 2018, ⟨10.1111/nph.15248⟩ Journal articles hal-01919943v1
	Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development Matthias Benoit , Lauriane Simon , Sophie Desset , Céline Duc , Sylviane Cotterell New Phytologist, 2018, 221 (1), pp.385 - 398. ⟨10.1111/nph.15248⟩ Journal articles hal-04170933v1
	The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants Axel Poulet , Ceíine Duc , Maxime Voisin , Sophie Desset , Sylvie Tutois Journal of Cell Science, 2017, 130 (3), pp.590-601. ⟨10.1242/jcs.194712⟩ Journal articles inserm-01629338v1
	Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression Céline Duc , Matthias Benoit , Gwénaëlle Détourné , Lauriane Simon , Axel Poulet The Plant cell, 2017, 29 (7), pp.1773 - 1793. ⟨10.1105/tpc.16.00877⟩ Journal articles hal-01919975v1
	The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants Céline Duc , Matthias Benoit , Samuel Le Goff , Lauriane Simon , Axel Poulet The Plant Journal, 2015, 81 (5), pp.707 - 722. ⟨10.1111/tpj.12758⟩ Journal articles hal-01919996v1

	A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants Matthias Benoit , Hajk-Georg Drost Plant Transposable Elements, 2250, Springer US, pp.1-14, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1134-0_1⟩ Book sections hal-04171678v1

	Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics Matthias Benoit Agricultural sciences. Université Blaise Pascal - Clermont-Ferrand II, 2014. English. ⟨NNT : 2014CLF22497⟩ Theses tel-01252520v1
	Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics Matthias Benoit Life Sciences [q-bio]. Université Blaise Pascal (Clermont Ferrand 2) (UBP), 2014. English. ⟨NNT : 2014CLF22497⟩ Theses tel-04170909v1

Matthias BENOIT

Presentation

Research domains

Skills

Publications

Epigenetic control during root development and symbiosis

Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome

Four to the floor: Active DNA demethylation defines somatic epigenetic patterns and impacts quantitative traits

Hot ‘n cold: Applying the cis-regulatory code to predict heat and cold stress response in maize

From non-self to self: stepwise mutations in transcription factors promote the transition to self-pollination in tomato

Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit

The right dose: molecular compensation maintains rRNA homeostasis upon reduction of ribosomal gene dosage in Arabidopsis

The Great Escape: How a Plant DNA Virus Hijacks an Imprinted Host Gene to Avoid Silencing

Glyphosate Resistance Decoded: The Reference Sequence of the Extrachromosomal DNA Replicon in Amaranth

On the Importance of Variation: A High-Resolution Map of Copy Number Variants in Arabidopsis

Shooting for the STARRs: A Modified STARR-seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves

In the Transcripts: Long-Read Transcriptomics Enables a Novel Type of Transposable Element Annotation in Plants

Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato

Slice and Dice: DCL2 Mediates the Production of 22-Nucleotide siRNAs that Influence Trait Variation in Soybean

New Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation

Environmental and epigenetic regulation of Rider retrotransposons in tomato

Sensitive detection of pre-integration intermediates of LTR retrotransposons in crop plants

Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development

Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development

The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants

Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression

The histone chaperone complex HIR maintains nucleosome occupancy and counterbalances impaired histone deposition in CAF-1 complex mutants

A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants

Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics

Histone H3 variants and chaperones in Arabidopsis thaliana heterochromatin dynamics