Matthieu BARRET

Research Director INRAE

Documents

Affiliations actuelles

Institut de Recherche en Horticulture et Semences (IRHS)
IRHS - Équipe EmerSys (Emergence, Systématique et Ecologie des Bactéries associées aux Plantes) (IRHS-EMERSYS)

Identifiants chercheurs

Contact

Présentation

Compétences

Community Ecology Bacterial physiology Genomics Metagenomics

Publications

Seed Microbiota Diversity and Culture Collection of Four Major Crops Covering Different Genotypes and Production Modes

Marie Simonin , Natalia Guschinskaya , Muriel Marchi , Coralie Marais , Anne Préveaux et al.

BioRxiv, 2026, ⟨10.64898/2026.04.29.721552⟩

Article dans une revue hal-05772577v1

Contribution of Floral Transmission to the Assembly and Health Impact of Bacterial Communities in Watermelon Seeds

Gillian E Bergmann , Kacie Lui , Carina Lopez , Alexander Velasco , Coralie Marais et al.

Phytobiomes Journal, 2026, 10 (2), pp.165 - 177. ⟨10.1094/pbiomes-08-25-0064-r⟩

Article dans une revue hal-05717668v1

Lactuchelins represent lipopeptide siderophores produced by Pseudomonas lactucae that inhibit Xanthomonas campestris

Guillaume Chesneau , Alba Noel , Dimitri Bréard , Alice Boulanger , Martial Briand et al.

The International Society of Microbiologial Ecology Journal, 2026, 20 (1), ⟨10.1093/ismejo/wrag003⟩

Article dans une revue hal-05529897v1

Dormancy and reactivation of the seed and its microbiome: a holobiont perspective

Davide Gerna , Thomas Chadelaud , Florian Lamouche , Matthieu Barret , Armelle Darrasse et al.

mSystems, 2026, 11 (1), pp.e0114025. ⟨10.1128/msystems.01140-25⟩

Article dans une revue hal-05556397v1

A stage‐dependent seed defense response to explain efficient seed transmission of Xanthomonas citri pv. fuscans to common bean

Armelle Darrasse , Łukasz Paweł Tarkowski , Martial Briand , David Lalanne , Nicolas Chen et al.

Plant, Cell and Environment, 2026, 49 (7), pp.3500-3517. ⟨10.1111/pce.15037⟩

Article dans une revue hal-04665509v1

Deep-learning-ready RGB-depth images of seedling development

Félix Mercier , Geoffroy Couasnet , Angelina El Ghaziri , Nizar Bouhlel , Alain Sarniguet et al.

Plant Methods, 2025, 21, 14 p. ⟨10.1186/s13007-025-01334-3⟩

Article dans une revue hal-04948208v1

Sowing success: ecological insights into seedling microbial colonisation for robust plant microbiota engineering

Oscar Joubert , Gontran Arnault , Matthieu Barret , Marie Simonin

Trends in Plant Science, 2025, 30 (1), pp.21-34. ⟨10.1016/j.tplants.2024.09.004⟩

Article dans une revue hal-05081372v1

Le microbiote des semences : diversité, assemblage et transmission

Matthieu Barret

Notes académiques de l'Académie d'agriculture de France., 2025, 20

Article dans une revue (article de synthèse) hal-05300075v1

T6SS-mediated competition by Stenotrophomonas rhizophila shapes seed-borne bacterial communities and seed-to-seedling transmission dynamics

Tiffany Garin , Agathe Brault , Coralie Marais , Martial Briand , Anne Préveaux et al.

mSystems, 2025, 10 (8), pp.e00457-25. ⟨10.1128/msystems.00457-25⟩

Article dans une revue hal-05293005v1

Elucidating the interplay between metabolites and microorganisms in the spermosphere of common bean (Phaseolus vulgaris L.) seeds

Chandrodhay Saccaram , Marie Simonin , Stéphanie Boutet , Céline Brosse , Shuang Peng et al.

mSystems, 2025, 10 (8), pp.e00707-25. ⟨10.1128/msystems.00707-25⟩

Article dans une revue hal-05533608v1

The type VI secretion system of Stenotrophomonas rhizophila CFBP13503 limits the transmission of Xanthomonas campestris pv. campestris 8004 from radish seeds to seedlings

Tiffany Garin , Chrystelle Brin , Anne Préveaux , Agathe Brault , Martial Briand et al.

Molecular Plant Pathology, 2024, 25 (1), pp.e13412. ⟨10.1111/mpp.13412⟩

Article dans une revue hal-04688341v1

Transcriptomic dataset of Phaseolus vulgaris leaves in response to the inoculation of pathogenic Xanthomonas citri pv. fuscans and its type III secretion system-defective mutant hrcV

Christopher Gihaut , Chrystelle Brin , Martial Briand , Jérôme Verdier , Matthieu Barret et al.

Data in Brief, 2024, 57, pp.110938. ⟨10.1016/j.dib.2024.110938⟩

Article dans une revue (data paper) hal-05263393v1

Stable, multigenerational transmission of the bean seed microbiome despite abiotic stress

Abby Sulesky-Grieb , Marie Simonin , A. Fina Bintarti , Brice Marolleau , Matthieu Barret et al.

mSystems, 2024, 9 (11), ⟨10.1128/msystems.00951-24⟩

Article dans une revue hal-04688340v1

Seedling microbiota engineering using bacterial synthetic community inoculation on seeds

Gontran Arnault , Coralie Marais , Anne Préveaux , Martial Briand , Anne-Sophie Poisson et al.

FEMS Microbiology Ecology, 2024, 100 (4), ⟨10.1093/femsec/fiae027⟩

Article dans une revue hal-04688333v1

Honey bees change the microbiota of pollen

Alberto Prado , Matthieu Barret , Bernard Vaissière , Gloria Torres-Cortes

Botanical sciences, 2023, 101 (1), pp.127-133. ⟨10.17129/botsci.3125⟩

Article dans une revue hal-04044122v1

Transmission of synthetic seed bacterial communities to radish seedlings: impact on microbiota assembly and plant phenotype

Marie Simonin , Anne Préveaux , Coralie Marais , Tiffany Garin , Gontran Arnault et al.

Peer Community Journal, 2023, 3, pp.e95. ⟨10.24072/pcjournal.329⟩

Article dans une revue hal-04688330v1

Single seed microbiota: assembly and transmission from parent plant to seedling

Guillaume Chesneau , Béatrice Laroche , Anne Préveaux , Coralie Marais , Martial Briand et al.

mBio, 2022, 13 (6), pp.0164822. ⟨10.1128/mbio.01648-22⟩

Article dans une revue hal-03834661v1

Seed microbiota revealed by a large-scale meta-analysis including 50 plant species

Marie Simonin , Martial Briand , Guillaume Chesneau , Aude Rochefort , Coralie Marais et al.

New Phytologist, 2022, 234 (4), pp.1448-1463. ⟨10.1111/nph.18037⟩

Article dans une revue hal-03299446v1

Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies

Rodrigo Alegria Terrazas , Senga Robertson-Albertyn , Aileen Mary Corral , Carmen Escudero-Martinez , Rumana Kapadia et al.

mSystems, 2022, 7 (6), pp.00934-22. ⟨10.1128/msystems.00934-22⟩

Article dans une revue hal-03889528v1

A rapid and simple method for assessing and representing genome sequence relatedness

Martial Briand , M Bouzid , G Hunault , M Legeay , Marion Fischer-Le Saux et al.

Peer Community Journal, 2021, 1, pp.e24. ⟨10.24072/pcjournal.37⟩

Article dans une revue hal-03560813v1

Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease.

Clemence Canivet , Norma David , Helene Pailhoriès , Martial Briand , Cynthia Guy et al.

Alimentary Pharmacology & Therapeutics, 2021, ⟨10.1111/apt.16262⟩

Article dans une revue hal-03138752v1

Maternal effects shape the seed mycobiome in Quercus petraea

Tania Fort , Charlie Pauvert , Amy Zanne , Otso Ovaskainen , Thomas Caignard et al.

New Phytologist, In press, pp.1-15. ⟨10.1111/nph.17153⟩

Article dans une revue hal-03140262v1

Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference

Valerie Laval , Lydie Kerdraon , Matthieu Barret , Anne-Lise Liabot , Coralie Marais et al.

Diversity, 2021, 13 (9), pp.404. ⟨10.3390/d13090404⟩

Article dans une revue hal-03368843v1

Transmission of Seed and Soil Microbiota to Seedling

Aude Rochefort , Marie Simonin , Coralie Marais , Anne-Yvonne Guillerm-Erckelboudt , Matthieu Barret et al.

mSystems, 2021, 6 (3), pp.00446-21. ⟨10.1128/msystems.00446-21⟩

Article dans une revue hal-03299428v1

Temporal dynamics of bacterial communities during seed development and maturation

Guillaume Chesneau , Gloria Torres-Cortes , Martial Briand , Armelle Darrasse , Anne Preveaux et al.

FEMS Microbiology Ecology, 2020, 96 (12), pp.fiaa190. ⟨10.1093/femsec/fiaa190⟩

Article dans une revue hal-02972234v1

Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans–Brassica napus pathosystem

Lydie Kerdraon , Matthieu Barret , Marie‐hélène Balesdent , Frédéric Suffert , Valerie Laval

Molecular Plant Pathology, 2020, 21 (12), pp.1545-1558. ⟨10.1111/mpp.12994⟩

Article dans une revue hal-04567438v1

Insect pollination: an ecological process involved in the assembly of the seed microbiota

Alberto Prado Farias , Brice Marolleau , Bernard Vaissière , Matthieu Barret , Gloria Torres-Cortés

Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-60591-5⟩

Article dans une revue hal-02623164v1

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat;

Lydie Kerdraon , Matthieu Barret , Valerie Laval , Frédéric Suffert

Microbiome, 2019, 7 (1), pp.125 et suiv. ⟨10.1101/587667⟩

Article dans une revue hal-02624822v1

Maternal effects and environmental filtering shape seed fungal communities in oak trees

Tania Fort , Charlie Pauvert , Amy E. Zanne , Otso Ovaskainen , Thomas Caignard et al.

BioRxiv, 2019, ⟨10.1101/691121⟩

Article dans une revue hal-02624819v1

Differences in resource use lead to coexistence of seed-transmitted microbial populations

Gloria Torres-Cortés , B. J. Garcia , Stéphane Compant , Samir Rezki , P Jones et al.

Scientific Reports, 2019, 9 (1), pp.6648. ⟨10.1038/s41598-019-42865-9⟩

Article dans une revue hal-02557440v1

Optimize the plant microbiota to increase plant growth and health

Matthieu Barret , P. Dufour , Mylène Durand-Tardif , Mahendra Mariadassou , Christophe Mougel et al.

Consortium Biocontrôle et GIS Biotechnologies Vertes , 2019, ⟨10.15454/1fve-e105⟩

Article dans une revue hal-03297096v1

rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing

Jean-Claude Ogier , Sylvie Pages , Maxime Galan , Matthieu Barret , Sophie Gaudriault

BMC Microbiology, 2019, 19, ⟨10.1186/s12866-019-1546-z⟩

Article dans une revue hal-02627663v1

Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings

Lydie Kerdraon , Marie-Helene Balesdent , Matthieu Barret , Valerie Laval , Frederic Suffert

Microbial ecology, 2019, 77 (4), pp.931 - 945. ⟨10.1007/s00248-019-01340-8⟩

Article dans une revue hal-02620072v1

Insect pollination is an ecological process involved in the assembly of the seed microbiota

Alberto Prado Farias , Brice Marolleau , Bernard Vaissière , Matthieu Barret , Gloria Torres Cortes

BioRxiv, 2019, ⟨10.1101/626895⟩

Article dans une revue hal-02624711v1

A rapid and simple method for assessing and representing genome sequences relatedness

Martial Briand , Mariam Bouzid , Gilles Hunault , Marc Legeay , Marion Le Saux et al.

BioRxiv, 2019, ⟨10.1101/569640⟩

Article dans une revue hal-02171444v1

Influence of environment and host plant genotype on the structure and diversity of the Brassica napus seed microbiota

Aude Rochefort , Martial Briand , Coralie Marais , Marie-Hélène Wagner , Anne Laperche et al.

Phytobiomes Journal, 2019, 3 (4), pp.326-336. ⟨10.1094/PBIOMES-06-19-0031-R⟩

Article dans une revue hal-02275205v1

Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish

Laurence Svanella-Dumas , Sébastien Theil , Matthieu Barret , Thierry Candresse

Archives of Virology, 2018, 163 (4), pp.1097-1100. ⟨10.1007/s00705-017-3693-6⟩

Article dans une revue hal-02516679v1

Editorial special issue: the soil, the seed, the microbes and the plant

Eric Nelson , Philippe Simoneau , Matthieu Barret , Birgit Mitter , Stéphane Compant

Plant and Soil, 2018, 422 (1-2), pp.1-5. ⟨10.1007/s11104-018-3576-y⟩

Article dans une revue hal-02516579v1

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Claudia Bartoli , Léa Frachon , Matthieu Barret , Mylène Rigal , Carine Huard-Chauveau et al.

The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩

Article dans une revue hal-02373577v1

Assembly of seed-associated microbial communities within and across successive plant generations

Samir Rezki , Claire Campion , Philippe Simoneau , Marie-Agnès Jacques , Ashley Shade et al.

Plant and Soil, 2018, 422 (1-2), pp.67-79. ⟨10.1007/s11104-017-3451-2⟩

Article dans une revue hal-02516590v1

Genome sequence of the necrotrophic plant pathogen Alternaria brassicicola Abra43

Elodie Belmas , Martial Briand , Anthony Kwasiborski , Justine Colou , Guillaume Nguyen et al.

Genome Announcements, 2018, 6 (6), pp.e01559-17. ⟨10.1128/genomeA.01559-17⟩

Article dans une revue hal-02516580v1

Commentary: seed bacterial inhabitants and their routes of colonization

Carolina Escobar Rodríguez , Birgit Mitter , Matthieu Barret , Angela Sessitsch , Stéphane Compant

Plant and Soil, 2018, 422 (1-2), pp.129-134. ⟨10.1007/s11104-017-3368-9⟩

Article dans une revue hal-02516685v1

Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

Gloria Torres-Cortés , Sophie Bonneau , Olivier Bouchez , Clémence Genthon , Martial Briand et al.

Frontiers in Plant Science, 2018, 9, pp.902. ⟨10.3389/fpls.2018.00902⟩

Article dans une revue hal-02516666v1

Niches and routes of transmission of Xanthomonas citri pv. fuscans to bean seeds

Armelle Darrasse , Matthieu Barret , Sophie Cesbron , Stéphane Compant , Marie-Agnès Jacques

Plant and Soil, 2017, 422 (1-2), pp.115-128. ⟨10.1007/s11104-017-3329-3⟩

Article dans une revue hal-05056275v1

Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens

Déborah Merda , Martial Briand , Eran Bosis , Céline Rousseau , Perrine Portier et al.

Molecular Ecology, 2017, 26 (21), pp.1-14. ⟨10.1111/mec.14343⟩

Article dans une revue hal-01904571v1

Bacterial and fungal communities vary with the type of organic substrate: implications for biocontrol of soilless crops

Virginie Montagne , Hervé Capiaux , Matthieu Barret , Patrice Cannavo , Sylvain Charpentier et al.

Environmental Chemistry Letters, 2017, 15 (3), pp.537-545. ⟨10.1007/s10311-017-0628-0⟩

Article dans une revue hal-01524498v1

Ecological patterns of seed microbiome diversity, transmission, and assembly

Ashley Shade , Marie-Agnès Jacques , Matthieu Barret

Current Opinion in Microbiology, 2017, 37, pp.15-22. ⟨10.1016/j.mib.2017.03.010⟩

Article dans une revue (article de synthèse) hal-02516692v1

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms

Samir Rezki , Claire Campion , Béatrice Iacomi-Vasilescu , Anne Préveaux , Youness Toualbia et al.

PeerJ, 2016, 4, pp.e1923. ⟨10.7717/peerj.1923⟩

Article dans une revue hal-01392639v1

Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods

Elisa Michel , Clarisse Monfort , Marion Deffrasnes , Stéphane Guezenec , Emilie Lhomme et al.

International Journal of Food Microbiology, 2016, 239, pp.35-43. ⟨10.1016/j.ijfoodmicro.2016.07.034⟩

Article dans une revue hal-01527569v1

Answer to Ling et al “Predictive roles of gut dysbiosis on the severity of NAFLD”

Jérôme Boursier , Matthieu Barret , Anna Mae Diehl

Hepatology, 2016, 64 (3), pp.994-995. ⟨10.1002/hep.28562⟩

Article dans une revue hal-02632028v1

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota

Matthieu Barret , Mariana Machado , Lionel Fizanne , Felix Araujo-Perez , Cynthia Guy et al.

Hepatology, 2016, 63 (3), pp.764-75. ⟨10.1002/hep.28356⟩

Article dans une revue hal-02516681v1

Plant microbiota affects seed transmission of phytopathogenic microorganisms

Matthieu Barret , Jean-François Guimbaud , Armelle Darrasse , Marie Agnes Jacques

Molecular Plant Pathology, 2016, 17 (6), pp.791-795. ⟨10.1111/mpp.12382⟩

Article dans une revue hal-01353543v1

Terroir is a key driver of seed-associated microbial assemblages

Stéphanie Klaedtke , Marie Agnes Jacques , Lorenzo Raggi , Anne Preveaux , Sophie Bonneau et al.

Environmental Microbiology, 2016, 18 (6), pp.1792-1804. ⟨10.1111/1462-2920.12977⟩

Article dans une revue hal-01455975v1

Emergence Shapes the Structure of the Seed Microbiota

Matthieu Barret , Martial Briand , Sophie Bonneau , Anne Préveaux , Sophie Valière et al.

Applied and Environmental Microbiology, 2015, 81 (4), pp.1257-1266. ⟨10.1128/AEM.03722-14⟩

Article dans une revue hal-01153480v1

Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria

Aurélie Deveau , Matthieu Barret , Abdala Gamby Diedhiou , Johan Leveau , Wietse de Boer et al.

Microbial ecology, 2015, 69 (1), pp.146-159. ⟨10.1007/s00248-014-0445-y⟩

Article dans une revue hal-01208788v1

The SPI-1-like Type III secretion system: more roles than you think

Frank Egan , Matthieu Barret , Fergal O'Gara

Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00034⟩

Article dans une revue hal-01210004v1

Identification of novel phytase genes from an agricultural soil-derived metagenome.

Hao Tan , Marlies J Mooij , Matthieu Barret , Pardraig M Hegarty , Catriona Harington et al.

World Journal of Microbiology and Biotechnology, 2014, 24 (1), pp.113-8. ⟨10.4014/jmb.1307.07007⟩

Article dans une revue hal-02639216v1

Molecular evolution of LysR-type transcriptional regulation in Pseudomonas aeruginosa

F. Jerry Reen , Matthieu Barret , Emilie Fargier , Marcus O’muinneacháin , Fergal O’gara

Molecular Phylogenetics and Evolution, 2013, 66 (3), pp.1041-1049. ⟨10.1016/j.ympev.2012.12.014⟩

Article dans une revue hal-02649223v1

Long-term phosphorus fertilisation increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils

Hao Tan , Matthieu Barret , Marlies J. Mooij , Olivia Rice , John P. Morrissey et al.

Biology and Fertility of Soils, 2013, 49 (6), pp.661-672. ⟨10.1007/s00374-012-0755-5⟩

Article dans une revue hal-02653047v1

Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots

Muriel Marchi , Morgane Boutin , Kévin Gazengel , Claude Rispe , Jean-Pierre Gauthier et al.

Environmental Microbiology Reports, 2013, 5 (3), pp.393 - 403. ⟨10.1111/1758-2229.12048⟩

Article dans une revue istex hal-01208629v1

Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction

Miguel Redondo-Nieto , Matthieu Barret , John Morrissey , Kieran Germaine , Francisco Martínez-Granero et al.

BMC Genomics, 2013, 14 (1), pp.1-17. ⟨10.1186/1471-2164-14-54⟩

Article dans une revue hal-02650368v1

Characterization of the SPI-1 and Rsp type three secretion systems inPseudomonas fluorescens F113

Matthieu Barret , Frank Egan , Jennifer Moynihan , John P. Morrissey , Olivier Lesouhaitier et al.

Environmental Microbiology Reports, 2013, 5 (3), pp.377-386. ⟨10.1111/1758-2229.12039⟩

Article dans une revue hal-02644403v1

Distribution and diversity of bacterial secretion systems across metagenomic datasets.

Matthieu Barret , Frank Egan , Fergal O'Gara

Environmental Microbiology Reports, 2013, 5 (1), pp.117-26. ⟨10.1111/j.1758-2229.2012.00394.x⟩

Article dans une revue hal-02653049v1

Subtilomycin: A New Lantibiotic from Bacillus subtilis Strain MMA7 Isolated from the Marine Sponge Haliclona simulans

Robert Phelan , Matthieu Barret , Paul Cotter , Paula O'Connor , Rui Chen et al.

Marine drugs, 2013, 11 (6), pp.1878-1898. ⟨10.3390/md11061878⟩

Article dans une revue hal-02651130v1

Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113

M. Redondo-Nieto , Matthieu Barret , J. P. Morrisey , K. Germaine , F. Martinez-Granero et al.

Journal of Bacteriology, 2012, 194 (5), pp.1273-1274. ⟨10.1128/JB.06601-11⟩

Article dans une revue hal-02652031v1

Bacterial-fungal Interactions: hyphens between agricultural, clinical, environmental, and food microbiologists

Pascale P. Frey-Klett , Peter Burlinson , Aurélie Deveau , Matthieu Barret , M. Tarkka et al.

Microbiology and Molecular Biology Reviews, 2011, 75 (4), pp.583 - +. ⟨10.1128/MMBR.00020-11⟩

Article dans une revue hal-02651157v1

Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered

Matthieu Barret , F. Egan , E. Fargier , J. P. Morrissey , F. O'Gara

Microbiology, 2011, 157 (6), pp.1726-1739. ⟨10.1099/mic.0.048645-0⟩

Article dans une revue hal-02650365v1

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

Matthieu Barret , John P. Morrissey , Fergal O’gara

Biology and Fertility of Soils, 2011, 47 (7), pp.729-743. ⟨10.1007/s00374-011-0605-x⟩

Article dans une revue istex hal-02650050v1

Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria

Thomas Browne , Matthieu Barret , Fergal O'Gara , John P Morrissey

BMC Microbiology, 2010, 10 (1), pp.1-12. ⟨10.1186/1471-2180-10-300⟩

Article dans une revue hal-02656830v1

The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp

Matthieu Barret , P. Frey-Klett , M. Boutin , Anne-Yvonne Guillerm-Erckelboudt , Frédérique Martin et al.

New Phytologist, 2009, 181 (2), pp.435-447. ⟨10.1111/j.1469-8137.2008.02675.x⟩

Article dans une revue inria-00359115v1

Effect of wheat roots infected with the pathogenic fungus gaeumannomyces graminis var. tritici on gene expression of the biocontrol bacterium pseudomonas fluorescens Pf29Arp

Matthieu Barret , Pascale P. Frey-Klett , Anne-Yvonne Guillerm-Erckelboudt , Morgane Boutin , Grégory Guernec et al.

Molecular Plant-Microbe Interactions, 2009, 22 (12), pp.1611-1623. ⟨10.1094/MPMI-22-12-1611⟩

Article dans une revue hal-02663862v1

Bactéries et champignons interagissent pour la santé des plantes

Alain A. Sarniguet , Matthieu Barret , Lionel Lebreton , Stéphanie Daval

Biofutur, 2008, 284, pp.30-33

Article dans une revue hal-02664697v1

Extended Biocontrol

Xavier Fauvergue , Adrien Rusch , Matthieu Barret , Marc Bardin , Emmanuelle Jacquin-Joly et al.

Springer Dordrecht; Editions Quae, 327 p., 2022, 978-94-024-2150-7

Ouvrages (ouvrage de synthèse) hal-03695954v1

Biocontrôle

Xavier Fauvergue , Adrien Rusch , Matthieu Barret , Marc Bardin , Emmanuelle Jacquin-Joly et al.

Editions Quae, 376 p., 2020, Savoir Faire (Quae), 978-2-7592-3076-1

Ouvrages (ouvrage de synthèse) hal-02791036v1

Plant Microbiota: Diversity, Transmission and Function

Matthieu Barret , Marc Buée , Christophe Mougel , Corinne Vacher

Extended Biocontrol, Springer Netherlands, pp.111-117, 2022, ⟨10.1007/978-94-024-2150-7_9⟩

Chapitre d'ouvrage hal-04059155v1

Le microbiote des plantes : diversité, transmission et fonction

Matthieu Barret , Marc Buée , Christophe Mougel , Corinne Vacher

Biocontrôle. Éléments pour une protection agroécologique des cultures., Editions Quae, 2020, Savoir Faire, 978-2-7592-3076-1

Chapitre d'ouvrage hal-03319624v1

Interactions plantes/micro-organismes dans la rhizosphère

Philippe Lemanceau , Matthieu Barret , Manuel Blouin , Sylvie Mazurier , Barbara Pivato

Les sols au coeur de la zone critique 6, écologie, ISTE, 2018, ISBN : 9781784053840 (papier) ISBN : 9781784063849 (ebook)

Chapitre d'ouvrage hal-02786073v1

Plant/micro-organism interactions in the rhizosphere. Chap 4

Philippe Lemanceau , Matthieu Barret , Manuel Blouin , Sylvie Mazurier , Barbara Pivato

Soils as a Key Component of the Critical Zone vol 6 Geosciences Series – Soils Set, ISTE Ltd and John Wiley & Sons, 2018, 978-1-119-57311-1

Chapitre d'ouvrage hal-02786890v1

Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere

Philippe P. Lemanceau , Matthieu Barret , Sylvie Mazurier , Samuel Mondy , Barbara Pivato et al.

How plants communicate with their biotic environment, 82, Academic Press - Elsevier, 2017, Advances in Botanical Research, 978-0-12-801431-8. ⟨10.1016/bs.abr.2016.10.007⟩

Chapitre d'ouvrage hal-01608302v1

Combined effects of wheat roots and pathogenic fungus Gaeumannomyces graminis var tritici on Gene Expression of the biocontrol bacterium Pseudomonas fluorescens Pf29Arp

Matthieu Barret , Pascale Frey-Klett , Anne-Yvonne Guillerm-Erckelboudt , Morgane Boutin , Grégory Guernec et al.

Molecular Microbial Ecology of the Rhizosphere: Volume 1 & 2, Wiley, 2013, 978-1-118-29617-2. ⟨10.1002/9781118297674.ch61⟩

Chapitre d'ouvrage hal-02803298v1

Analyse différentielle du transcriptome de la rhizobactérie Pseudomonas fluorescens Pf29Arp lors d'intercations avec le champignon pathogène du blé Gaeumannomyces graminis var. tritici

Matthieu Barret

Sciences du Vivant [q-bio]. AGROCAMPUS OUEST, 2009. Français. ⟨NNT : ⟩

Thèse tel-02818996v1

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Matthieu BARRET

Présentation

Compétences

Publications

Publications

Seed Microbiota Diversity and Culture Collection of Four Major Crops Covering Different Genotypes and Production Modes

Contribution of Floral Transmission to the Assembly and Health Impact of Bacterial Communities in Watermelon Seeds

Lactuchelins represent lipopeptide siderophores produced by <i>Pseudomonas lactucae</i> that inhibit <i>Xanthomonas campestris</i>

Dormancy and reactivation of the seed and its microbiome: a holobiont perspective

A stage‐dependent seed defense response to explain efficient seed transmission of Xanthomonas citri pv. fuscans to common bean

Deep-learning-ready RGB-depth images of seedling development

Sowing success: ecological insights into seedling microbial colonisation for robust plant microbiota engineering

Le microbiote des semences : diversité, assemblage et transmission

T6SS-mediated competition by Stenotrophomonas rhizophila shapes seed-borne bacterial communities and seed-to-seedling transmission dynamics

Elucidating the interplay between metabolites and microorganisms in the spermosphere of common bean (Phaseolus vulgaris L.) seeds

The type VI secretion system of Stenotrophomonas rhizophila CFBP13503 limits the transmission of Xanthomonas campestris pv. campestris 8004 from radish seeds to seedlings

Transcriptomic dataset of Phaseolus vulgaris leaves in response to the inoculation of pathogenic Xanthomonas citri pv. fuscans and its type III secretion system-defective mutant hrcV

Stable, multigenerational transmission of the bean seed microbiome despite abiotic stress

Seedling microbiota engineering using bacterial synthetic community inoculation on seeds

Honey bees change the microbiota of pollen

Transmission of synthetic seed bacterial communities to radish seedlings: impact on microbiota assembly and plant phenotype

Single seed microbiota: assembly and transmission from parent plant to seedling

Seed microbiota revealed by a large-scale meta-analysis including 50 plant species

Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies

A rapid and simple method for assessing and representing genome sequence relatedness

Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease.

Maternal effects shape the seed mycobiome in Quercus petraea

Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference

Transmission of Seed and Soil Microbiota to Seedling

Temporal dynamics of bacterial communities during seed development and maturation

Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans–Brassica napus pathosystem

Insect pollination: an ecological process involved in the assembly of the seed microbiota

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of <em>Zymoseptoria tritici</em> in wheat;

Maternal effects and environmental filtering shape seed fungal communities in oak trees

Differences in resource use lead to coexistence of seed-transmitted microbial populations

Optimize the plant microbiota to increase plant growth and health

rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing

Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings

Insect pollination is an ecological process involved in the assembly of the seed microbiota

A rapid and simple method for assessing and representing genome sequences relatedness

Influence of environment and host plant genotype on the structure and diversity of the Brassica napus seed microbiota

Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish

Editorial special issue: the soil, the seed, the microbes and the plant

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Assembly of seed-associated microbial communities within and across successive plant generations

Genome sequence of the necrotrophic plant pathogen Alternaria brassicicola Abra43

Commentary: seed bacterial inhabitants and their routes of colonization

Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

Niches and routes of transmission of Xanthomonas citri pv. fuscans to bean seeds

Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens

Bacterial and fungal communities vary with the type of organic substrate: implications for biocontrol of soilless crops

Ecological patterns of seed microbiome diversity, transmission, and assembly

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms

Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods

Answer to Ling et al “Predictive roles of gut dysbiosis on the severity of NAFLD”

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota

Plant microbiota affects seed transmission of phytopathogenic microorganisms

Terroir is a key driver of seed-associated microbial assemblages

Emergence Shapes the Structure of the Seed Microbiota

Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria

The SPI-1-like Type III secretion system: more roles than you think

Identification of novel phytase genes from an agricultural soil-derived metagenome.

Molecular evolution of LysR-type transcriptional regulation in Pseudomonas aeruginosa

Long-term phosphorus fertilisation increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils

Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots

Genome sequence reveals that <em>Pseudomonas fluorescens</em> F113 possesses a large and diverse array of systems for rhizosphere function and host interaction

Characterization of the SPI-1 and Rsp type three secretion systems inPseudomonas fluorescens F113

Distribution and diversity of bacterial secretion systems across metagenomic datasets.

Subtilomycin: A New Lantibiotic from Bacillus subtilis Strain MMA7 Isolated from the Marine Sponge Haliclona simulans

Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113

Bacterial-fungal Interactions: hyphens between agricultural, clinical, environmental, and food microbiologists

Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria

The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp

Effect of wheat roots infected with the pathogenic <em>fungus gaeumannomyces graminis</em> var. tritici on gene expression of the biocontrol bacterium pseudomonas fluorescens Pf29Arp

Bactéries et champignons interagissent pour la santé des plantes

Extended Biocontrol

Biocontrôle

Plant Microbiota: Diversity, Transmission and Function