Matthieu BARRET

Research Director INRAE
81
Documents
Affiliations actuelles
  • Institut de Recherche en Horticulture et Semences (IRHS)
  • IRHS - Équipe EmerSys (Emergence, Systématique et Ecologie des Bactéries associées aux Plantes) (IRHS-EMERSYS)
Contact

Présentation


Compétences

Community Ecology Bacterial physiology Genomics Metagenomics

Publications

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Publications

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Lactuchelins represent lipopeptide siderophores produced by <i>Pseudomonas lactucae</i> that inhibit <i>Xanthomonas campestris</i>

Guillaume Chesneau , Alba Noel , Dimitri Bréard , Alice Boulanger , Martial Briand et al.

The International Society of Microbiologial Ecology Journal, 2026, 20 (1), ⟨10.1093/ismejo/wrag003⟩

Article dans une revue hal-05529897v1

Dormancy and reactivation of the seed and its microbiome: a holobiont perspective

Davide Gerna , Thomas Chadelaud , Florian Lamouche , Matthieu Barret , Armelle Darrasse et al.

mSystems, 2026, 11 (1), pp.e0114025. ⟨10.1128/msystems.01140-25⟩

Article dans une revue hal-05556397v1
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Elucidating the interplay between metabolites and microorganisms in the spermosphere of common bean ( Phaseolus vulgaris L.) seeds

Chandrodhay Saccaram , Marie Simonin , Stéphanie Boutet , Céline Brosse , Shuang Peng et al.

mSystems, 2025, 10 (8), pp.e00707-25. ⟨10.1128/msystems.00707-25⟩

Article dans une revue hal-05533608v1
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Deep-learning-ready RGB-depth images of seedling development

Félix Mercier , Geoffroy Couasnet , Angelina El Ghaziri , Nizar Bouhlel , Alain Sarniguet et al.

Plant Methods, 2025, 21, 14 p. ⟨10.1186/s13007-025-01334-3⟩

Article dans une revue hal-04948208v1

Sowing success: ecological insights into seedling microbial colonisation for robust plant microbiota engineering

Oscar Joubert , Gontran Arnault , Matthieu Barret , Marie Simonin

Trends in Plant Science, 2025, 30 (1), pp.21-34. ⟨10.1016/j.tplants.2024.09.004⟩

Article dans une revue hal-05081372v1
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Le microbiote des semences : diversité, assemblage et transmission

Matthieu Barret

Notes académiques de l'Académie d'agriculture de France., 2025, 20

Article dans une revue (article de synthèse) hal-05300075v1
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T6SS-mediated competition by Stenotrophomonas rhizophila shapes seed-borne bacterial communities and seed-to-seedling transmission dynamics

Tiffany Garin , Agathe Brault , Coralie Marais , Martial Briand , Anne Préveaux et al.

mSystems, 2025, 10 (8), pp.e00457-25. ⟨10.1128/msystems.00457-25⟩

Article dans une revue hal-05293005v1
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A stage‐dependent seed defense response to explain efficient seed transmission of Xanthomonas citri pv. fuscans to common bean

Armelle Darrasse , Łukasz Paweł Tarkowski , Martial Briand , David Lalanne , Nicolas Chen et al.

Plant, Cell and Environment, 2024, ⟨10.1111/pce.15037⟩

Article dans une revue hal-04665509v1
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The type VI secretion system of Stenotrophomonas rhizophila CFBP13503 limits the transmission of Xanthomonas campestris pv. campestris 8004 from radish seeds to seedlings

Tiffany Garin , Chrystelle Brin , Anne Préveaux , Agathe Brault , Martial Briand et al.

Molecular Plant Pathology, 2024, 25 (1), pp.e13412. ⟨10.1111/mpp.13412⟩

Article dans une revue hal-04688341v1
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Transcriptomic dataset of Phaseolus vulgaris leaves in response to the inoculation of pathogenic Xanthomonas citri pv. fuscans and its type III secretion system-defective mutant hrcV

Christopher Gihaut , Chrystelle Brin , Martial Briand , Jérôme Verdier , Matthieu Barret et al.

Data in Brief, 2024, 57, pp.110938. ⟨10.1016/j.dib.2024.110938⟩

Article dans une revue (data paper) hal-05481605v1
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Stable, multigenerational transmission of the bean seed microbiome despite abiotic stress

Abby Sulesky-Grieb , Marie Simonin , A. Fina Bintarti , Brice Marolleau , Matthieu Barret et al.

mSystems, 2024, 9 (11), ⟨10.1128/msystems.00951-24⟩

Article dans une revue hal-04688340v1
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Transcriptomic dataset of Phaseolus vulgaris leaves in response to the inoculation of pathogenic Xanthomonas citri pv. fuscans and its type III secretion system-defective mutant hrcV

Christopher Gihaut , Chrystelle Brin , Martial Briand , Jérôme Verdier , Matthieu Barret et al.

Data in Brief, 2024, 57, pp.110938. ⟨10.1016/j.dib.2024.110938⟩

Article dans une revue (data paper) hal-05263393v1
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Seedling microbiota engineering using bacterial synthetic community inoculation on seeds

Gontran Arnault , Coralie Marais , Anne Préveaux , Martial Briand , Anne-Sophie Poisson et al.

FEMS Microbiology Ecology, 2024, 100 (4), ⟨10.1093/femsec/fiae027⟩

Article dans une revue hal-04688333v1
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Honey bees change the microbiota of pollen

Alberto Prado , Matthieu Barret , Bernard Vaissière , Gloria Torres-Cortes

Botanical sciences, 2023, 101 (1), pp.127-133. ⟨10.17129/botsci.3125⟩

Article dans une revue hal-04044122v1
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Transmission of synthetic seed bacterial communities to radish seedlings: impact on microbiota assembly and plant phenotype

Marie Simonin , Anne Préveaux , Coralie Marais , Tiffany Garin , Gontran Arnault et al.

Peer Community Journal, 2023, 3, pp.e95. ⟨10.24072/pcjournal.329⟩

Article dans une revue hal-04688330v1
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Single seed microbiota: assembly and transmission from parent plant to seedling

Guillaume Chesneau , Béatrice Laroche , Anne Préveaux , Coralie Marais , Martial Briand et al.

mBio, 2022, 13 (6), pp.0164822. ⟨10.1128/mbio.01648-22⟩

Article dans une revue hal-03834661v1
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Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies

Rodrigo Alegria Terrazas , Senga Robertson-Albertyn , Aileen Mary Corral , Carmen Escudero-Martinez , Rumana Kapadia et al.

mSystems, 2022, 7 (6), pp.00934-22. ⟨10.1128/msystems.00934-22⟩

Article dans une revue hal-03889528v1

Seed microbiota revealed by a large-scale meta-analysis including 50 plant species

Marie Simonin , Martial Briand , Guillaume Chesneau , Aude Rochefort , Coralie Marais et al.

New Phytologist, 2022, 234 (4), pp.1448-1463. ⟨10.1111/nph.18037⟩

Article dans une revue hal-03299446v1
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A rapid and simple method for assessing and representing genome sequence relatedness

Martial Briand , M Bouzid , G Hunault , M Legeay , Marion Fischer-Le Saux et al.

Peer Community Journal, 2021, 1, pp.e24. ⟨10.24072/pcjournal.37⟩

Article dans une revue hal-03560813v1

Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease.

Clemence Canivet , Norma David , Helene Pailhoriès , Martial Briand , Cynthia Guy et al.

Alimentary Pharmacology & Therapeutics, 2021, ⟨10.1111/apt.16262⟩

Article dans une revue hal-03138752v1
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Maternal effects shape the seed mycobiome in Quercus petraea

Tania Fort , Charlie Pauvert , Amy Zanne , Otso Ovaskainen , Thomas Caignard et al.

New Phytologist, inPress, pp.1-15. ⟨10.1111/nph.17153⟩

Article dans une revue hal-03140262v1
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Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference

Valerie Laval , Lydie Kerdraon , Matthieu Barret , Anne-Lise Liabot , Coralie Marais et al.

Diversity, 2021, 13 (9), pp.404. ⟨10.3390/d13090404⟩

Article dans une revue hal-03368843v1
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Transmission of Seed and Soil Microbiota to Seedling

Aude Rochefort , Marie Simonin , Coralie Marais , Anne-Yvonne Guillerm-Erckelboudt , Matthieu Barret et al.

mSystems, 2021, 6 (3), pp.00446-21. ⟨10.1128/msystems.00446-21⟩

Article dans une revue hal-03299428v1
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Insect pollination: an ecological process involved in the assembly of the seed microbiota

Alberto Prado Farias , Brice Marolleau , Bernard Vaissière , Matthieu Barret , Gloria Torres-Cortés

Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-60591-5⟩

Article dans une revue hal-02623164v1

Temporal dynamics of bacterial communities during seed development and maturation

Guillaume Chesneau , Gloria Torres-Cortes , Martial Briand , Armelle Darrasse , Anne Preveaux et al.

FEMS Microbiology Ecology, 2020, 96 (12), pp.fiaa190. ⟨10.1093/femsec/fiaa190⟩

Article dans une revue hal-02972234v1
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Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans–Brassica napus pathosystem

Lydie Kerdraon , Matthieu Barret , Marie‐hélène Balesdent , Frédéric Suffert , Valerie Laval

Molecular Plant Pathology, 2020, 21 (12), pp.1545-1558. ⟨10.1111/mpp.12994⟩

Article dans une revue hal-04567438v1
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Influence of environment and host plant genotype on the structure and diversity of the Brassica napus seed microbiota

Aude Rochefort , Martial Briand , Coralie Marais , Marie-Hélène Wagner , Anne Laperche et al.

Phytobiomes Journal, 2019, 3 (4), pp.326-336. ⟨10.1094/PBIOMES-06-19-0031-R⟩

Article dans une revue hal-02275205v1
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rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing

Jean-Claude Ogier , Sylvie Pages , Maxime Galan , Matthieu Barret , Sophie Gaudriault

BMC Microbiology, 2019, 19, ⟨10.1186/s12866-019-1546-z⟩

Article dans une revue hal-02627663v1
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Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings

Lydie Kerdraon , Marie-Helene Balesdent , Matthieu Barret , Valerie Laval , Frederic Suffert

Microbial ecology, 2019, 77 (4), pp.931 - 945. ⟨10.1007/s00248-019-01340-8⟩

Article dans une revue hal-02620072v1
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Differences in resource use lead to coexistence of seed-transmitted microbial populations

Gloria Torres-Cortés , B. J. Garcia , Stéphane Compant , Samir Rezki , P Jones et al.

Scientific Reports, 2019, 9 (1), pp.6648. ⟨10.1038/s41598-019-42865-9⟩

Article dans une revue hal-02557440v1
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Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of <em>Zymoseptoria tritici</em> in wheat;

Lydie Kerdraon , Matthieu Barret , Valerie Laval , Frédéric Suffert

Microbiome, 2019, 7 (1), pp.125 et suiv. ⟨10.1101/587667⟩

Article dans une revue hal-02624822v1
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Maternal effects and environmental filtering shape seed fungal communities in oak trees

Tania Fort , Charlie Pauvert , Amy E. Zanne , Otso Ovaskainen , Thomas Caignard et al.

BioRxiv, 2019, ⟨10.1101/691121⟩

Article dans une revue hal-02624819v1
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Optimize the plant microbiota to increase plant growth and health

Matthieu Barret , P. Dufour , Mylène Durand-Tardif , Mahendra Mariadassou , Christophe Mougel et al.

Consortium Biocontrôle et GIS Biotechnologies Vertes , 2019, ⟨10.15454/1fve-e105⟩

Article dans une revue hal-03297096v1
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Insect pollination is an ecological process involved in the assembly of the seed microbiota

Alberto Prado Farias , Brice Marolleau , Bernard Vaissière , Matthieu Barret , Gloria Torres Cortes

BioRxiv, 2019, ⟨10.1101/626895⟩

Article dans une revue hal-02624711v1
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A rapid and simple method for assessing and representing genome sequences relatedness

Martial Briand , Mariam Bouzid , Gilles Hunault , Marc Legeay , Marion Le Saux et al.

BioRxiv, 2019, ⟨10.1101/569640⟩

Article dans une revue hal-02171444v1

Commentary: seed bacterial inhabitants and their routes of colonization

Carolina Escobar Rodríguez , Birgit Mitter , Matthieu Barret , Angela Sessitsch , Stéphane Compant

Plant and Soil, 2018, 422 (1-2), pp.129-134. ⟨10.1007/s11104-017-3368-9⟩

Article dans une revue hal-02516685v1
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Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

Gloria Torres-Cortés , Sophie Bonneau , Olivier Bouchez , Clémence Genthon , Martial Briand et al.

Frontiers in Plant Science, 2018, 9, pp.902. ⟨10.3389/fpls.2018.00902⟩

Article dans une revue hal-02516666v1

Editorial special issue: the soil, the seed, the microbes and the plant

Eric Nelson , Philippe Simoneau , Matthieu Barret , Birgit Mitter , Stéphane Compant

Plant and Soil, 2018, 422 (1-2), pp.1-5. ⟨10.1007/s11104-018-3576-y⟩

Article dans une revue hal-02516579v1
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Assembly of seed-associated microbial communities within and across successive plant generations

Samir Rezki , Claire Campion , Philippe Simoneau , Marie-Agnès Jacques , Ashley Shade et al.

Plant and Soil, 2018, 422 (1-2), pp.67-79. ⟨10.1007/s11104-017-3451-2⟩

Article dans une revue hal-02516590v1

Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish

Laurence Svanella-Dumas , Sébastien Theil , Matthieu Barret , Thierry Candresse

Archives of Virology, 2018, 163 (4), pp.1097-1100. ⟨10.1007/s00705-017-3693-6⟩

Article dans une revue hal-02516679v1

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Claudia Bartoli , Léa Frachon , Matthieu Barret , Mylène Rigal , Carine Huard-Chauveau et al.

The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩

Article dans une revue hal-02373577v1

Niches and routes of transmission of Xanthomonas citri pv. fuscans to bean seeds

Armelle Darrasse , Matthieu Barret , Sophie Cesbron , Stéphane Compant , Marie-Agnès Jacques

Plant and Soil, 2018, 422 (1-2), pp.115-128. ⟨10.1007/s11104-017-3329-3⟩

Article dans une revue hal-02516672v1
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Genome sequence of the necrotrophic plant pathogen Alternaria brassicicola Abra43

Elodie Belmas , Martial Briand , Anthony Kwasiborski , Justine Colou , Guillaume Nguyen et al.

Genome Announcements, 2018, 6 (6), pp.e01559-17. ⟨10.1128/genomeA.01559-17⟩

Article dans une revue hal-02516580v1
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Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens

Déborah Merda , Martial Briand , Eran Bosis , Céline Rousseau , Perrine Portier et al.

Molecular Ecology, 2017, 26 (21), pp.1-14. ⟨10.1111/mec.14343⟩

Article dans une revue hal-01904571v1

Niches and routes of transmission of Xanthomonas citri pv. fuscans to bean seeds

Armelle Darrasse , Matthieu Barret , Sophie Cesbron , Stéphane Compant , Marie-Agnès Jacques

Plant and Soil, 2017, 422 (1-2), pp.115-128. ⟨10.1007/s11104-017-3329-3⟩

Article dans une revue hal-05056275v1

Bacterial and fungal communities vary with the type of organic substrate: implications for biocontrol of soilless crops

Virginie Montagne , Hervé Capiaux , Matthieu Barret , Patrice Cannavo , Sylvain Charpentier et al.

Environmental Chemistry Letters, 2017, 15 (3), pp.537-545. ⟨10.1007/s10311-017-0628-0⟩

Article dans une revue hal-01524498v1

Ecological patterns of seed microbiome diversity, transmission, and assembly

Ashley Shade , Marie-Agnès Jacques , Matthieu Barret

Current Opinion in Microbiology, 2017, 37, pp.15-22. ⟨10.1016/j.mib.2017.03.010⟩

Article dans une revue (article de synthèse) hal-02516692v1
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Terroir is a key driver of seed-associated microbial assemblages

Stéphanie Klaedtke , Marie Agnes Jacques , Lorenzo Raggi , Anne Preveaux , Sophie Bonneau et al.

Environmental Microbiology, 2016, 18 (6), pp.1792-1804. ⟨10.1111/1462-2920.12977⟩

Article dans une revue hal-01455975v1
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Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms

Samir Rezki , Claire Campion , Béatrice Iacomi-Vasilescu , Anne Préveaux , Youness Toualbia et al.

PeerJ, 2016, 4, pp.e1923. ⟨10.7717/peerj.1923⟩

Article dans une revue hal-01392639v1
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Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods

Elisa Michel , Clarisse Monfort , Marion Deffrasnes , Stéphane Guezenec , Emilie Lhomme et al.

International Journal of Food Microbiology, 2016, 239, pp.35-43. ⟨10.1016/j.ijfoodmicro.2016.07.034⟩

Article dans une revue hal-01527569v1

Answer to Ling et al “Predictive roles of gut dysbiosis on the severity of NAFLD”

Jérôme Boursier , Matthieu Barret , Anna Mae Diehl

Hepatology, 2016, 64 (3), pp.994-995. ⟨10.1002/hep.28562⟩

Article dans une revue hal-02632028v1
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Plant microbiota affects seed transmission of phytopathogenic microorganisms

Matthieu Barret , Jean-François Guimbaud , Armelle Darrasse , Marie Agnes Jacques

Molecular Plant Pathology, 2016, 17 (6), pp.791-795. ⟨10.1111/mpp.12382⟩

Article dans une revue hal-01353543v1

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota

Matthieu Barret , Mariana Machado , Lionel Fizanne , Felix Araujo-Perez , Cynthia Guy et al.

Hepatology, 2016, 63 (3), pp.764-75. ⟨10.1002/hep.28356⟩

Article dans une revue hal-02516681v1

Emergence Shapes the Structure of the Seed Microbiota

Matthieu Barret , Martial Briand , Sophie Bonneau , Anne Préveaux , Sophie Valière et al.

Applied and Environmental Microbiology, 2015, 81 (4), pp.1257-1266. ⟨10.1128/AEM.03722-14⟩

Article dans une revue hal-01153480v1

Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria

Aurélie Deveau , Matthieu Barret , Abdala Gamby Diedhiou , Johan Leveau , Wietse de Boer et al.

Microbial ecology, 2015, 69 (1), pp.146-159. ⟨10.1007/s00248-014-0445-y⟩

Article dans une revue hal-01208788v1
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The SPI-1-like Type III secretion system: more roles than you think

Frank Egan , Matthieu Barret , Fergal O'Gara

Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00034⟩

Article dans une revue hal-01210004v1

Identification of novel phytase genes from an agricultural soil-derived metagenome.

Hao Tan , Marlies J Mooij , Matthieu Barret , Pardraig M Hegarty , Catriona Harington et al.

World Journal of Microbiology and Biotechnology, 2014, 24 (1), pp.113-8. ⟨10.4014/jmb.1307.07007⟩

Article dans une revue hal-02639216v1
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Subtilomycin: A New Lantibiotic from Bacillus subtilis Strain MMA7 Isolated from the Marine Sponge Haliclona simulans

Robert Phelan , Matthieu Barret , Paul Cotter , Paula O'Connor , Rui Chen et al.

Marine drugs, 2013, 11 (6), pp.1878-1898. ⟨10.3390/md11061878⟩

Article dans une revue hal-02651130v1
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Genome sequence reveals that <em>Pseudomonas fluorescens</em> F113 possesses a large and diverse array of systems for rhizosphere function and host interaction

Miguel Redondo-Nieto , Matthieu Barret , John Morrissey , Kieran Germaine , Francisco Martínez-Granero et al.

BMC Genomics, 2013, 14 (1), pp.1-17. ⟨10.1186/1471-2164-14-54⟩

Article dans une revue hal-02650368v1

Molecular evolution of LysR-type transcriptional regulation in Pseudomonas aeruginosa

F. Jerry Reen , Matthieu Barret , Emilie Fargier , Marcus O’muinneacháin , Fergal O’gara

Molecular Phylogenetics and Evolution, 2013, 66 (3), pp.1041-1049. ⟨10.1016/j.ympev.2012.12.014⟩

Article dans une revue hal-02649223v1

Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots

Muriel Marchi , Morgane Boutin , Kévin Gazengel , Claude Rispe , Jean-Pierre Gauthier et al.

Environmental Microbiology Reports, 2013, 5 (3), pp.393 - 403. ⟨10.1111/1758-2229.12048⟩

Article dans une revue istex hal-01208629v1

Long-term phosphorus fertilisation increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils

Hao Tan , Matthieu Barret , Marlies J. Mooij , Olivia Rice , John P. Morrissey et al.

Biology and Fertility of Soils, 2013, 49 (6), pp.661-672. ⟨10.1007/s00374-012-0755-5⟩

Article dans une revue hal-02653047v1

Characterization of the SPI-1 and Rsp type three secretion systems inPseudomonas fluorescens F113

Matthieu Barret , Frank Egan , Jennifer Moynihan , John P. Morrissey , Olivier Lesouhaitier et al.

Environmental Microbiology Reports, 2013, 5 (3), pp.377-386. ⟨10.1111/1758-2229.12039⟩

Article dans une revue hal-02644403v1

Distribution and diversity of bacterial secretion systems across metagenomic datasets.

Matthieu Barret , Frank Egan , Fergal O'Gara

Environmental Microbiology Reports, 2013, 5 (1), pp.117-26. ⟨10.1111/j.1758-2229.2012.00394.x⟩

Article dans une revue hal-02653049v1

Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113

M. Redondo-Nieto , Matthieu Barret , J. P. Morrisey , K. Germaine , F. Martinez-Granero et al.

Journal of Bacteriology, 2012, 194 (5), pp.1273-1274. ⟨10.1128/JB.06601-11⟩

Article dans une revue hal-02652031v1

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

Matthieu Barret , John P. Morrissey , Fergal O’gara

Biology and Fertility of Soils, 2011, 47 (7), pp.729-743. ⟨10.1007/s00374-011-0605-x⟩

Article dans une revue istex hal-02650050v1

Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered

Matthieu Barret , F. Egan , E. Fargier , J. P. Morrissey , F. O'Gara

Microbiology, 2011, 157 (6), pp.1726-1739. ⟨10.1099/mic.0.048645-0⟩

Article dans une revue hal-02650365v1

Bacterial-fungal Interactions: hyphens between agricultural, clinical, environmental, and food microbiologists

Pascale P. Frey-Klett , Peter Burlinson , Aurélie Deveau , Matthieu Barret , M. Tarkka et al.

Microbiology and Molecular Biology Reviews, 2011, 75 (4), pp.583 - +. ⟨10.1128/MMBR.00020-11⟩

Article dans une revue hal-02651157v1
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Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria

Thomas Browne , Matthieu Barret , Fergal O'Gara , John P Morrissey

BMC Microbiology, 2010, 10 (1), pp.1-12. ⟨10.1186/1471-2180-10-300⟩

Article dans une revue hal-02656830v1

Effect of wheat roots infected with the pathogenic <em>fungus gaeumannomyces graminis</em> var. tritici on gene expression of the biocontrol bacterium pseudomonas fluorescens Pf29Arp

Matthieu Barret , Pascale P. Frey-Klett , Anne-Yvonne Guillerm-Erckelboudt , Morgane Boutin , Grégory Guernec et al.

Molecular Plant-Microbe Interactions, 2009, 22 (12), pp.1611-1623. ⟨10.1094/MPMI-22-12-1611⟩

Article dans une revue hal-02663862v1

The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp

Matthieu Barret , P. Frey-Klett , M. Boutin , Anne-Yvonne Guillerm-Erckelboudt , Frédérique Martin et al.

New Phytologist, 2009, 181 (2), pp.435-447. ⟨10.1111/j.1469-8137.2008.02675.x⟩

Article dans une revue inria-00359115v1

Bactéries et champignons interagissent pour la santé des plantes

Alain A. Sarniguet , Matthieu Barret , Lionel Lebreton , Stéphanie Daval

Biofutur, 2008, 284, pp.30-33

Article dans une revue hal-02664697v1

Extended Biocontrol

Xavier Fauvergue , Adrien Rusch , Matthieu Barret , Marc Bardin , Emmanuelle Jacquin-Joly et al.

Springer Dordrecht; Editions Quae, 327 p., 2022, 978-94-024-2150-7

Ouvrages (ouvrage de synthèse) hal-03695954v1

Biocontrôle

Xavier Fauvergue , Adrien Rusch , Matthieu Barret , Marc Bardin , Emmanuelle Jacquin-Joly et al.

Editions Quae, 376 p., 2020, Savoir Faire (Quae), 978-2-7592-3076-1

Ouvrages (ouvrage de synthèse) hal-02791036v1

Plant Microbiota: Diversity, Transmission and Function

Matthieu Barret , Marc Buée , Christophe Mougel , Corinne Vacher

Extended Biocontrol, Springer Netherlands, pp.111-117, 2022, ⟨10.1007/978-94-024-2150-7_9⟩

Chapitre d'ouvrage hal-04059155v1

Le microbiote des plantes : diversité, transmission et fonction

Matthieu Barret , Marc Buée , Christophe Mougel , Corinne Vacher

Biocontrôle. Éléments pour une protection agroécologique des cultures., Editions Quae, 2020, Savoir Faire, 978-2-7592-3076-1

Chapitre d'ouvrage hal-03319624v1

Plant/micro-organism interactions in the rhizosphere. Chap 4

Philippe Lemanceau , Matthieu Barret , Manuel Blouin , Sylvie Mazurier , Barbara Pivato

Soils as a Key Component of the Critical Zone vol 6 Geosciences Series – Soils Set, ISTE Ltd and John Wiley & Sons, 2018, 978-1-119-57311-1

Chapitre d'ouvrage hal-02786890v1

Interactions plantes/micro-organismes dans la rhizosphère

Philippe Lemanceau , Matthieu Barret , Manuel Blouin , Sylvie Mazurier , Barbara Pivato

Les sols au coeur de la zone critique 6, écologie, ISTE, 2018, ISBN : 9781784053840 (papier) ISBN : 9781784063849 (ebook)

Chapitre d'ouvrage hal-02786073v1

Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere

Philippe P. Lemanceau , Matthieu Barret , Sylvie Mazurier , Samuel Mondy , Barbara Pivato et al.

How plants communicate with their biotic environment, 82, Academic Press - Elsevier, 2017, Advances in Botanical Research, 978-0-12-801431-8. ⟨10.1016/bs.abr.2016.10.007⟩

Chapitre d'ouvrage hal-01608302v1

Combined effects of wheat roots and pathogenic fungus Gaeumannomyces graminis var tritici on Gene Expression of the biocontrol bacterium Pseudomonas fluorescens Pf29Arp

Matthieu Barret , Pascale Frey-Klett , Anne-Yvonne Guillerm-Erckelboudt , Morgane Boutin , Grégory Guernec et al.

Molecular Microbial Ecology of the Rhizosphere: Volume 1 & 2, Wiley, 2013, 978-1-118-29617-2. ⟨10.1002/9781118297674.ch61⟩

Chapitre d'ouvrage hal-02803298v1