Michael Alaux
Publications
Publications
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Preliminary Results from the IWGSC Wheat Diversity ProjectPAG 33, Jan 2026, San diego, United States |
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WheatIS EWG annual meeting 2025PAG 32, Jan 2025, San Diego (CA), United States |
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Find Genomic, Genetic and Phenomic Data for Wheat Using the WheatIS Data Discovery ToolPAG 32, Jan 2025, San Diego (CA), United States |
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Genetic Resources Data Exchange and Findability for the French Plant Genebanks Using BrAPIPAG 32, Jan 2025, San Diego (CA), United States |
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Les services de FAIRification des données à l’URGI : cas d’utilisation par des projets/consortium nationaux et internationauxRéunion annuelle de l'IFB, Dec 2025, Paris, France |
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Interopérabilité des données en sciences de la vie : contexte, ressources et cas d’utilisationAssises Nationale des Données Ouvertes de la Recherche, Ministère de l'Enseignement Supérieur, de la Recherche et de l'Espace, Dec 2025, Gif-sur-Yvette, France |
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IWGSC data repository news and overview of the plans for the WheatISPAG XXX - Plant and Animal Genome Conference, Jan 2023, San Diego, United States |
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WheatIS EWG annual meeting 2023PAG XXX - Plant and Animal Genome Conference, Jan 2023, San Diego, United States |
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Feedback from the wheat community: the case of the WheatISGrapedia kickoff meeting, Nov 2022, Online, Spain |
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Beyond COST Action INTEGRAPE: The Grapevine Genomics Encyclopedia InitiativeXIII. International Symposium on Grapevine Breeding and Genetics, JKI, Jul 2022, Landau, Germany. 1 p |
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WheatIS EWG updatesWheat Initiative Jamboree, Oct 2022, Carlow, Ireland |
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Developing infrastructures for FAIR data in plant biologyGatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany |
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Linking the International Wheat Genome Sequencing Consortium Bread Wheat Reference Genome Sequence to Wheat Genetic and Phenomic DataPAG XXVII - Plant and Animal Genome Conference, Jan 2019, San Diego, United States |
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Updates on the WheatIS toolsPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States |
Developing grapevine FAIR DataPAG Conference 2018, Jan 2018, San Diego, United States |
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WheatIS data discoveryPAG XXVII - Plant and Animal Genome Conference, Jan 2019, San Diego, United States |
BreedWheat GWAS data in GnpIS information systemEucarpia Cereal Section - Breeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France |
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Improving the « FAIRness » of Inra’s data for plant biology and breedingPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides |
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectivesPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides |
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides |
The IWGSC Reference genome browser, data mining and beyondPAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States |
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Making wheat data FAIRe-ROSA Workshop, Wageningen University and Research Centre (WUR). NLD., Jul 2017, Montpellier, France |
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Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRAPlant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic |
Sequencing and Analysis of Wheat Chromosome 1BPlant and Animal Genome XXIV Conference; IWGSC Standards and Protocoles Workshop, Jan 2016, San Diego, United States |
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IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheatPAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States |
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Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, United States. pp.24 slides |
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Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States |
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IWGSC sequence repository : how to facilitate pseudomolecule assembly?PAG XXIII - Plant and Animal Genome Conference, Jan 2015, San Diego, United States |
A reference sequence of wheat chromosome 3B3. Plant Genomics Congress, May 2015, London, United Kingdom |
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IWGSC Sequence repository at URGI: New features and blast toolPAG XXII - Plant and Animal Genome, Jan 2014, San Diego, United States |
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A reference sequence of wheat chromosome 3B22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States |
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URGI plant and fungi platform: distributed resources through GMOD toolsPlant and Animal Genome conference XXII, GMOD session, Jan 2014, San Diego, United States |
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Plant biology open data interoperability in the big data eraPlant Biology Europe EPSO/FEPBS 2014, Jun 2014, Dublin, Germany |
Information system for phenotype data: trait, trials and genotypes identification and integration22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States |
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Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3BIWGSC Wheat Genome Sequencing Strategy and Funding Workshop, International Wheat Genome Sequencing Consortium (IWGSC). USA., Apr 2013, Evry, France |
IWGSC Sequence repository : new data and browsers12. IWGS (International Wheat Genetics Symposium), Kyoto University [Kyoto] (KU). JPN., Sep 2013, Yokohama, Japan |
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IWGSC Sequence repository : Blast your favorite gene against the wheat survey sequencePAG XXI - Plant and Animal Genome, Jan 2013, San Diego, United States |
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3BTGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom |
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Towards a reference sequence of the 1 Gb wheat chromosome 3B16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, United States |
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URGI genome annotation system:an integrated system for structural and functional genome annotation12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p |
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Sequencing and analyses of the hexaploid wheat chromosome 3B10. conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom |
GnpAnnot community annotation system: features, qualifiers, values3. International Biocuration Conference, Apr 2009, Berlin, Germany |
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Preliminary Results from the IWGSC Wheat Diversity ProjectPAG 33, Jan 2026, San Diego, United States |
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IWGSC 2.0: Wheat Genome Curation for Future Crop Resilience The International Wheat Genome Sequencing ConsortiumPAG32, 2025, San Diego, United States |
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URGI – A scientific facility dedicated to plant bioinformaticsJOBIM 2025, Jul 2025, Bordeaux (France), France |
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IWGSC 2.0: Implementing the Wheat Diversity ProjectPAG 2024 Australia, Sep 2024, Perth, Australia |
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Data FAIRification in a cross-institutional governance framework : recommendations from the ANR-BRIDGE projectRDA 19th Plenary meeting, part of International Data Week, Jun 2022, Seoul, South Korea. , 2022, ⟨10.5281/zenodo.6652404⟩ |
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩ |
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRACrop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. , 2017, EUCARPIA Genetic Resources 2017 |
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BreedWheat genotyping and phenotyping data in GnpIS information systemJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015 |
Wheat Crop Ontology: A Species Specific Trait Ontology. Use Case: The URGI Information SystemPlant and Animal Genome, Jan 2013, San Diego, United States. 2013 |
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Wheat Data Integration and FAIRification: IWGSC, GrainGenes, Ensembl and Other Data RepositoriesThe Wheat Genome, Springer International Publishing, pp.13-25, In press, Compendium of Plant Genomes, ⟨10.1007/978-3-031-38294-9_2⟩ |
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Mining plant genomic and genetic data using the GnpIS information systemAalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩ |
The Wheat Black Jack : advances towards sequencing the 21 chromosomes of the bread wheat genomeGenomics of Plant Genetic Resources, Editions Springer, 704 p., 2014, 978-94-007-7571-8. ⟨10.1007/978-94-007-7572-5_17⟩ |
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Ontology mapping for wheat trait information managementSéminaire résidentiel INRAE Semantic Linked Data, 2023 |
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AGENT Guidelines for dataflow2025 |
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URGI data management planINRAE. 2024, 22 p |
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RDF Query interface from BrAPI web service sourceINRAE. 2017, https://rd-alliance.org/sites/default/files/attachment/Creation%20of%20a%20Query%20interface%20for%20phenotyping%20data%20Final%20Report.pdf |
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Rapport de synthèse du chantier DOI[0] 2014, 47 p |