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Michel Dojat

Director of Research, Inserm. Deputy scientific director for digital biology and digital medicine, Inria. Cofounder & scientific advisor of Pixyl Medical (https://pixyl.ai/).
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Research domains


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Neuroinformatics, Neuroimaging, AI in Medicine, Human Vision

Publications

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Uncertainty-based Quality Control for Subcortical Structures Segmentation in T1-weighted Brain MRI

Benjamin Lambert , Florence Forbes , Senan Doyle , Alan Tucholka , Michel Dojat
ISMRM 2023 - International Society for Magnetic Resonance in Medicine, Jun 2023, Toronto, Canada. pp.1-4
Conference papers hal-04126201v1
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Brain subtle anomaly detection based on auto-encoders latent space analysis : application to de novo parkinson patients

Nicolas Pinon , Geoffroy Oudoumanessah , Robin Trombetta , Michel Dojat , Florence Forbes
ISBI 2023 - IEEE 20th International Symposium on Biomedical Imaging, Apr 2023, Cartegena de Indias, Colombia. pp.1-4
Conference papers hal-03998623v1
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Intervalles de confiance pour l'estimation de superficies à partir d'images satellitaires

Benjamin Lambert , Florence Forbes , Senan Doyle , Alan Tucholka , Michel Dojat
GRETSI 2023 - XXIXème Colloque Francophone de Traitement du Signal et des Images, Aug 2023, Grenoble, France. pp.1-4
Conference papers hal-04140049v1
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Beyond Voxel Prediction Uncertainty: Identifying brain lesions you can trust

Benjamin Lambert , Florence Forbes , Senan Doyle , Alan Tucholka , Michel Dojat
iMIMIC 2022 - Workshop on Interpretability of Machine Intelligence in Medical Image Computing, Sep 2022, Singapore, Singapore. pp.61-70, ⟨10.1007/978-3-031-17976-1_6⟩
Conference papers hal-03883749v1
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Fast Uncertainty Quantification for Deep Learning-based MR Brain Segmentation

Benjamin Lambert , Florence Forbes , Senan Doyle , Alan Tucholka , Michel Dojat
EGC 2022 - Conference francophone pour l'Extraction et la Gestion des Connaissances, Jan 2022, Blois, France. pp.1-12
Conference papers hal-03498120v1
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Multi-Scale Evaluation of Uncertainty Quantification Techniques for Deep Learning based MRI Segmentation

Benjamin Lambert , Florence Forbes , Alan Tucholka , Senan Doyle , Michel Dojat
ISMRM-ESMRMB & ISMRT 2022 - 31st Joint Annual Meeting International Society for Magnetic Resonance in Medecine, May 2022, London, United Kingdom. pp.1-3
Conference papers hal-03578023v1
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Patch vs. Global Image-Based Unsupervised Anomaly Detection in MR Brain Scans of Early Parkinsonian Patients

Verónica Muñoz-Ramírez , Nicolas Pinon , Florence Forbes , Carole Lartizien , Michel Dojat
MLCN 2021 - 4th International Workshop in Machine Learning in Clinical Neuroimaging, Sep 2021, Strasbourg, France. pp.34-43, ⟨10.1007/978-3-030-87586-2_4⟩
Conference papers hal-03397081v1

Apport du Transfer Learning pour la segmentation automatique de lésions cérébrales radio-induites chez des patients atteints de glioblastome à partir d’un nombre restreint d’IRMs annotées

Thomas Coudert , Sophie Ancelet , Nadya Pyatigorskaya , Lucia Nichelli , Damien Ricard
Journées de biostatistique 2021 du GDR « Statistiques & Santé », Oct 2021, virtuel, France
Conference papers hal-03505861v1
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Network embedding for brain connectivity

Lucrezia Carboni , Sophie Achard , Michel Dojat
ISBI 2021 - International Symposium on Biomedical Imaging, Apr 2021, Nice / Virtual, France. pp.1-4
Conference papers hal-03273946v1
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MSSEG-2: A medical imaging challenge on VIP

Sorina Camarasu-Pop , Axel Bonnet , Arthur Masson , Michael Kain , Michel Dojat
EGI Conference 2021, Oct 2021, En ligne, France
Conference papers hal-03708105v1
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MSSEG-2: Un challenge d'imagerie médicale sur VIP

Sorina Camarasu-Pop , Axel Bonnet , Arthur Masson , Michael Kain , Michel Dojat
JCAD 2021, Dec 2021, En ligne, France
Conference papers hal-03708108v1

EyeProxy_DB : an open database on the visual system of healthy young volunteers (oculometric, EEG and MRI signals)

Nathalie Guyader , Lea Entzmann , Gaëlle Nicolas , Louise Kauffmann , Emmanuelle Kristensen
GDR Vision, Oct 2021, Lille, France
Conference papers hal-03540373v1
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Leveraging 3D information in unsupervised brain MRI segmentation

Benjamin Lambert , Maxime Louis , Senan Doyle , Florence Forbes , Michel Dojat
ISBI 2021 - 18th International Symposium on Biomedical Imaging, Apr 2021, Nice / Virtual, France. pp.1-4
Conference papers hal-03273953v1

Imageurs encore un effort si vous voulez partager des données !

Michel Dojat
Journées INS2I Nouvelles imageries : journées en hommage à Christian Barillot, Dec 2020, Rennes, France
Conference papers hal-03030791v1

Interactions workpackages - Hub IAM

Michel Dojat
Journées des workpackages de FLI, Nov 2020, GRENOBLE, France
Conference papers hal-03030811v1
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Deep learning models to study the early stages of Parkinson's disease

Verónica Muñoz Ramírez , Virgilio Kmetzsch , Florence Forbes , Michel Dojat
ISBI 2020 - IEEE International Symposium on Biomedical Imaging, Apr 2020, Iowa City, United States. ⟨10.1109/ISBI45749.2020.9098529⟩
Conference papers hal-03873699v1
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No Structural Differences Are Revealed by VBM in 'de novo' Parkinsonian Patients

Verónica Muñoz Ramírez , Florence Forbes , Pierrick Coupé , Michel Dojat
MEDINFO 2019 - 17th World Congress On Medical And Health Informatics, Aug 2019, Lyon, France. pp.268-272, ⟨10.3233/SHTI190225⟩
Conference papers hal-02426273v1
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No structural Brain differences in 'de novo' Parkinsonian patients

Verónica Muñoz Ramírez , Florence Forbes , Pierrick Coupé , Michel Dojat
OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-5
Conference papers hal-02192447v1

Apprentissage Machine et Santé

Michel Dojat
Festival Transfo, Jan 2019, GRENOBLE, France
Conference papers hal-02165661v1
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Mixture Models for the characterization of brain abnormalities in "de novo" Parkinsonian patients

Verónica Muñoz Ramírez , Michel Dojat , Florence Forbes
CNIV 2019 - 3e Congrès National d’Imagerie du Vivant, Feb 2019, Paris, France. pp.1-16
Conference papers hal-02436886v1

Sharing Data and Image Processing Pipelines: The Information Analysis & Management initiative

Michel Dojat
FAID: French American Innovative Day. Procedural medicine in the digital age, Mar 2019, Houston, United States
Conference papers hal-02165632v1
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Brain abnormalities detection in de Novo Parkinsonian patients

Verónica Muñoz Ramírez , Florence Forbes , Alexis Arnaud , Michel Dojat
OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-11
Conference papers hal-02415101v1
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Quantitative MRI characterization of brain abnormalities in de novo Parkinsonian patients

Verónica Muñoz Ramírez , Florence Forbes , Julyan Arbel , Alexis Arnaud , Michel Dojat
ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venice, Italy. pp.1-4, ⟨10.1109/ISBI.2019.8759544⟩
Conference papers hal-01970682v2

Is the study of Machine Learning distracting for Neurosciences?

Michel Dojat
Global Challenges Science Week, Jun 2019, Grenoble, France
Conference papers hal-02165642v1
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France Life Imaging and the transversal node for Information Analysis and Management (IAM)

Christian Barillot , Michel Dojat , Michael Kain
JFR 2018 - Journées Françaises de Radiologie, Oct 2018, Paris, France. pp.1-15
Conference papers inserm-01895605v1

Machine Learning & Neurosciences

Michel Dojat
Workshop ECCOREV "Intelligence artificielle et Big Data", Nov 2018, Aix-en-Provence, France
Conference papers hal-02165616v1
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PyHRF: A Python Library for the Analysis of fMRI Data Based on Local Estimation of the Hemodynamic Response Function

Jaime Arias , Philippe Ciuciu , Michel Dojat , Florence Forbes , Aina Frau-Pascual
16th Python in Science Conference (SciPy 2017), Jul 2017, Austin, TX, United States. pp.34-40, ⟨10.25080/shinma-7f4c6e7-006⟩
Conference papers hal-01566457v1

EyeCoG: Eye movements as multidimensional signatures of cognitive and cerebral (dys)functioning

Louise Kauffmann , Carole Peyrin , Michel Dojat , Nathalie Guyader
Journée Scientifique de NeuroCoG, Nov 2017, Grenoble, France
Conference papers hal-02000154v1
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Sharing Data and Image Processing Pipelines: The Information Analysis & Management initiative

Michel Dojat , Bénédicte Batrancourt , Yann Cointepas , Olivier Coulon , Tristan Glatard
OHBM 2016 - 22nd Annual Meeting of the Organization for Human Brain Mapping, Jun 2016, Geneve, Suisse
Conference papers hal-01488230v1

Segmentation des tumeurs cérébrales de bas grade par une approche bayésienne : délinéation manuelle versus automatique

Senan Doyle , Benjamin Lemasson , Flor Vasseur , Pierre Bourdillion , François Ducray
2ème congrès de la SFRMBM (Société Française de Résonance Magnétique en Biologie et Médecine), Mar 2015, Grenoble, France
Conference papers hal-01107520v1

Age-related differences in spatial frequency processing during scene categorization

Stephen Ramanoël , Louise Kauffmann , Michel Dojat , Emilie Cousin , Carole Peyrin
GDR Vision, Dec 2014, Lyon, France
Conference papers hal-02000128v1

Comparison of manual versus automatic delineation of low-grade gliomas based on MR brain scans

Senan Doyle , Benjamin Lemasson , Flor Vasseur , Pierre Bourdillion , François Ducray
Organization for Human Brain Mapping (OHBM) 2014 Annual meeting, Jun 2014, Hambourg, Germany
Conference papers hal-01107700v1
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Variational Variable Selection To Assess Experimental Condition Relevance In Event-Related fMRI

Christine Bakhous , Florence Forbes , Thomas Vincent , Michel Dojat , Philippe Ciuciu
ISBI 2013 - 10th IEEE International Symposium on Biomedical Imaging, Apr 2013, San Francisco, United States. pp.1508-1511, ⟨10.1109/ISBI.2013.6556821⟩
Conference papers hal-00859391v1

Analyse parcimonieuse des données d'IRM fonctionnelle dans un cadre bayésien variationnel

Christine Bakhous , Florence Forbes , Farida Enikeeva , Thomas Vincent , Michel Dojat
45èmes Journées de Statistique, Société Française de Statistique, May 2013, Toulouse, France
Conference papers hal-00933701v1
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Adaptive experimental condition selection in event-related fMRI

Christine Bakhous , Florence Forbes , Thomas Vincent , Lotfi Chaari , Michel Dojat
ISBI 2012 - IEEE International Symposium on Biomedical Imaging, May 2012, Barcelone, Spain. pp.1755-1758, ⟨10.1109/ISBI.2012.6235920⟩
Conference papers cea-00710489v1

Sélection de variables dans un cadre Bayésien de traitement de données d'IRM fonctionnelle

Christine Bakhous , Florence Forbes , Thomas Vincent , Lotfi Chaari , Michel Dojat
44e Journées de Statistique, Société Française de Statistique, May 2012, Bruxelles, Belgique
Conference papers hal-00780088v1

Bayesian variational approximation for the joint detection estimation of brain activity in fMRI

Lotfi Chaari , Florence Forbes , Philippe Ciuciu , Thomas Vincent , Michel Dojat
SSP 2011 - IEEE Statistical Signal Processing Workshop, Jun 2011, Nice, France. pp.469-472, ⟨10.1109/SSP.2011.5967734⟩
Conference papers hal-00780506v1

Cortical representation of the hand movements

Chantal Delon-Martin , Michel Dojat , Olivier A.J. Martin , François Moutet , Fabrizzio Pizzagalli
2e Rencontres du Pôle Grenoble Cognition, May 2011, Grenoble, France
Conference papers hal-00639422v1
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NeuroLOG: sharing neuroimaging data using an ontology-based federated approach.

Bernard Gibaud , Gilles Kassel , Michel Dojat , Bénédicte Batrancourt , Franck Michel
American Medical Informatics Association, Oct 2011, Washington DC, United States. pp.472-80
Conference papers hal-00683087v1
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Variational solution to the joint detection estimation of brain activity in fMRI

Lotfi Chaari , Florence Forbes , Thomas Vincent , Michel Dojat , Philippe Ciuciu
MICCAI 2011 - 14th International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2011, Toronto, Canada. pp.260-268, ⟨10.1007/978-3-642-23629-7_32⟩
Conference papers inserm-00635384v1

Neural Plasticity Correlates Of The Thumb Extension Recovery After Tendon Transfer. A Case Study

Olivier A.J. Martin , Fabrizzio Pizzagalli , Chantal Delon-Martin , Michel Dojat , Franck Quaine
OHBM 2011 - 17th Annual Meeting of the Organization for Human Brain Mapping, Jun 2011, Québec City, Canada. pp.75
Conference papers hal-00642142v1

A federated system for sharing and reuse of images and image processing tools in neuroimaging

Bernard Gibaud , Farooq Ahmad , Christian Barillot , Franck Michel , Bacem Wali
Computer Assisted Radiology and Surgery (CARS'11), Jun 2011, Berlin, Germany
Conference papers hal-00690921v1

A Variational Bayesian approach for the Joint Detection Estimation of Brain Activity in functional MRI

Lotfi Chaari , Florence Forbes , Philippe Ciuciu , Michel Dojat
43èmes Journées de Statistique, Société Française de Statistique (SFdS), May 2011, Tunis, Tunisia
Conference papers hal-00780559v1

NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging

Michel Dojat , Mélanie Pélégrini-Issac , Farooq Ahmad , Christian Barillot , Bénédicte Batrancourt
Organization for Human Brain Mapping (HBM'11), Jun 2011, Quebec, Canada
Conference papers hal-00813796v1
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Adaptive weighted fusion of multiple MR sequences for brain lesion segmentation

Florence Forbes , Senan Doyle , Daniel Garcia-Lorenzo , Christian Barillot , Michel Dojat
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2010, Rotterdam, Netherlands. pp.69-72, ⟨10.1109/ISBI.2010.5490413⟩
Conference papers inserm-00723807v1
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A core ontology of instruments used for neurological, behavioral and cognitive assessments

Bénédicte Batrancourt , Michel Dojat , Bernard Gibaud , Gilles Kassel
International conference on formal ontology in information systems, May 2010, Toronto, Canada. pp.185-198, ⟨10.3233/978-1-60750-535-8-185⟩
Conference papers inserm-00519801v1
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Grid-wide neuroimaging data federation in the context of the NeuroLOG project.

Franck Michel , Alban Gaignard , Farooq Ahmad , Christian Barillot , Bénédicte Batrancourt
HealthGrid'10, Jun 2010, Paris, France. pp.112-123, ⟨10.3233/978-1-60750-583-9-112⟩
Conference papers inserm-00512799v1
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A Weighted Multi-Sequence Markov Model For Brain Lesion Segmentation

Florence Forbes , Senan Doyle , Daniel Garcia-Lorenzo , Christian Barillot , Michel Dojat
13th International Conference on Artificial Intelligence and Statistics - AISTATS 2010, May 2010, Sardinia, Italy. pp.225-232
Conference papers inserm-00723808v1
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A conditional random field approach for coupling local registration with robust tissue and structure segmentation

Benoît Scherrer , Florence Forbes , Michel Dojat
MICCAI 2009 - 12th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2009, London, United Kingdom. pp.540-548, ⟨10.1007/978-3-642-04271-3_66⟩
Conference papers inserm-00517880v1
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Interprétation collaborative de séries temporelles

Thomas Guyet , Catherine Garbay , Michel Dojat
Colloque de l'association pour la recherche cognitive, Dec 2009, Rouen, France
Conference papers inria-00461366v1

Cortical and motor plasticity in response to multi digit tendon transfers: a case report

Franck Quaine , Florent Paclet , Violaine Cahouet , Olivier A.J. Martin , Chantal Delon-Martin
ISB 2009 - XXII Congress of the International Society of Biomechanics 2009, Jul 2009, Le Cap, South Africa
Conference papers hal-00372763v1
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L'Analyse en Composantes Indépendantes Temporelle en Imagerie par Résonance Magnétique Fonctionnelle

Cécile Bordier , Michel Dojat , Pierre Lafaye de Micheaux
41èmes Journées de Statistique, Société Française de Statistique, May 2009, Bordeaux, France
Conference papers inria-00386659v1

AnalyzeFMRI: an R package to perform statistical analysis on FMRI datasets

Cécile Bordier , Michel Dojat , Pierre Lafaye de Micheaux
useR! 2009 - The R User Conference, Jul 2008, Rennes, France. pp.25
Conference papers hal-00851143v1
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Fully Bayesian joint model for MR brain scan tissue and structure segmentation

Benoit Scherrer , Florence Forbes , Catherine Garbay , Michel Dojat
11th International Conference on Medical Image Computing and Computer-Assisted Intervention – MICCAI 2008, Sep 2008, New York, NY, United States. pp.1066-1074, ⟨10.1007/978-3-540-85990-1_128⟩
Conference papers inserm-00356883v1
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Multimodal MRI segmentation of ischemic stroke lesions

Yacine Kabir , Michel Dojat , Benoît Scherrer , Florence Forbes , Catherine Garbay
EMBS 2007 - 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Aug 2007, Lyon, France. pp.1595-1598, ⟨10.1109/IEMBS.2007.4352610⟩
Conference papers inserm-00402278v1
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MRF agent based segmentation: Application to MRI brain scans

Benoit Scherrer , Dojat Michel , Florence Forbes , Catherine Garbay
AIME 2007 - 11th Conference on Artificial Intelligence in Medicine, Jul 2007, Amsterdam, Netherlands. pp.13-23, ⟨10.1007/978-3-540-73599-1_2⟩
Conference papers inserm-00519836v1
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LOCUS: local cooperative unified segmentation of MRI brain scans

Benoît Scherrer , Michel Dojat , Florence Forbes , Catherine Garbay
MICCAI07 - 10th International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2007, Brisbane, Australia. pp.219-227, ⟨10.1007/978-3-540-75757-3_27⟩
Conference papers inserm-00402276v1
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A human-machine cooperative approach for time series data interpretation

Thomas Guyet , Catherine Garbay , Dojat Michel
11th Conference on Artificial Intelligence in Medicine (AIME 2007), Jul 2007, Amsterdam, Netherlands. pp.3-12
Conference papers inserm-00519815v1

A Human-Machine Cooperative Approach for Time Series Data Interpretation

Thomas Guyet , Catherine Garbay , Michel Dojat
The 11th Conference on Artificial Intelligence In Medicine, Aug 2007, Aberdeen, United Kingdom. ⟨10.1007/978-3-540-73599-1_1⟩
Conference papers inria-00461454v1

Une Approche SMA pour la Segmentation Markovienne des Tissus et Structures Présents dans les IRM Cérébrales

Benoit Scherrer , Michel Dojat , Florence Forbes , Catherine Garbay
2èmes journées algéro-françaises en imagerie médicale, JETIM 2006, November, 2006, 2006, Alger, Algeria
Conference papers hal-00953906v1
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OntoNeuroBase: a multi-layered application ontology in neuroimaging

Lynda Temal , Pascal Lando , Bernard Gibaud , Michel Dojat , Gilles Kassel
Second Workshop: Formal Ontologies Meet Industry (FOMI 2006), Dec 2006, trento, Italy
Conference papers inserm-00140523v1
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Sharing data and image processing tools in neuroimaging.

Bernard Gibaud , Christian Barillot , Habib Benali , Michel Dojat , Alban Gaignard
CARS 2006 - Computer Assisted Radiology and Surgery, Jun 2006, Osaka, Japan. pp.41-42
Conference papers inserm-00152138v1

Computer/Human Structural Coupling for Data Interpretation

Thomas Guyet , Catherine Garbay , Michel Dojat
Proc ENACTIVE 2006: Third International Conference on Enactive Interfaces, Enaction and Complexity, 2006, Montpellier, France
Conference papers hal-00953904v1

Segmentation Markovienne distribuée et coopérative des tissus et des structures présents dans des IRM cérébrales

Benoit Scherrer , Michel Dojat , Florence Forbes , Catherine Garbay
RFIA - 15ème Congres Reconnaissance des Formes et Intelligence Artificielle, RFIA 2006, 2006, Tours, France. pp.1-10
Conference papers hal-00954054v1

Distributed and Cooperative Markovian Segmentation of tissues and structures in MRI brain scans

Benoit Scherrer , Michel Dojat , Florence Forbes , Catherine Garbay
Human Brain Mapping Meeting, HBM 2006, June, 2006, 2006, Florence, Italy
Conference papers hal-00953905v1
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Human-Computer interaction to learn scenarios from ICU multivariate time series

Thomas Guyet , Catherine Garbay , Michel Dojat
Artificial Intelligence in Medicine. Proceedings of the European Conference on Artificial Intelligence in Medicine AIME'05, Jul 2005, Aberdeen- Scotland, United Kingdom. pp.424-428
Conference papers inserm-00519870v1

Statistical shape modeling of unfolded retinotopic maps for a visual areas probabilistic atlas

Isabelle Corouge , Christian Barillot , Michel Dojat
Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2003, Canada. pp.705-713, ⟨10.1007/978-3-540-39899-8_86⟩
Conference papers inserm-00772625v1

Des Objets Concurrents aux Agents Autonomes

Zahia Guessoum , Jean-Pierre Briot , Michel Dojat
Cinquièmes Journées Francophones sur l'Intelligence Artificielle Distribuée et les Systèmes Multi-Agents (JFIADSMA'97), Apr 1997, La Colle-sur-Loup, France. pp.93-107
Conference papers hal-01629614v1
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Nodal statistics-based equivalence relation for graph collections

Lucrezia Carboni , Michel Dojat , Sophie Achard
Physical Review E , 2023, 107 (1), pp.014302. ⟨10.1103/PhysRevE.107.014302⟩
Journal articles hal-03866289v1
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Editorial: Automatic methods for multiple sclerosis new lesions detection and segmentation

Olivier Commowick , Benoît Combès , Frédéric Cervenansky , Michel Dojat
Frontiers in Neuroscience, 2023, 17, pp.1176625. ⟨10.3389/fnins.2023.1176625⟩
Journal articles hal-04076125v1

ImUnity: A generalizable VAE-GAN solution for multicenter MR image harmonization

Stenzel Cackowski , Emmanuel Barbier , Michel Dojat , Thomas Christen
Medical Image Analysis, 2023, 88, pp.102799. ⟨10.1016/j.media.2023.102799⟩
Journal articles hal-04116278v1

Automated Quantification of Brain Lesion Volume From Post-trauma MR Diffusion-Weighted Images

Thomas Mistral , Pauline Roca , Christophe Maggia , Alan Tucholka , Florence Forbes
Frontiers in Neurology, 2022, 12, pp.740603. ⟨10.3389/fneur.2021.740603⟩
Journal articles hal-03593111v1
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Effective connectivity in subcortical visual structures in de novo Patients with Parkinson’s Disease

Emmanuelle Bellot , Louise Kauffmann , Véronique Coizet , Sara Meoni , Elena Moro
Neuroimage-Clinical, 2022, 33, pp.102906. ⟨10.1016/j.nicl.2021.102906⟩
Journal articles hal-03582724v1
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Subtle anomaly detection: Application to brain MRI analysis of de novo Parkinsonian patients

Verónica Muñoz-Ramírez , Virgilio Kmetzsch , Florence Forbes , Sara Meoni , Elena Moro
Artificial Intelligence in Medicine, 2022, 125, pp.102251. ⟨10.1016/j.artmed.2022.102251⟩
Journal articles hal-03578350v1
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Neural correlates of intra-saccadic motion perception

Gaëlle Nicolas , Eric Castet , Adrien Rabier , Emmanuelle Kristensen , Michel Dojat
Journal of Vision, 2021, 21 (19), ⟨10.1167/jov.21.11.19⟩
Journal articles hal-03405299v1
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Multiple sclerosis lesions segmentation from multiple experts: The MICCAI 2016 challenge dataset

Olivier Commowick , Michaël Kain , Romain Casey , Roxana Ameli , Jean-Christophe Ferré
NeuroImage, 2021, 244, pp.1-8. ⟨10.1016/j.neuroimage.2021.118589⟩
Journal articles hal-03358961v1
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Multivariate pattern analysis of fMRI data for imaginary and real colours in grapheme-colour synaesthesia

Mathieu J Ruiz , Michel Dojat , Jean-Michel Hupé
European Journal of Neuroscience, 2020, 52 (5), pp.3434-3456. ⟨10.1111/ejn.14774⟩
Journal articles hal-03020119v1
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Small Animal Shanoir (SAS) A Cloud-Based Solution for Managing Preclinical MR Brain Imaging Studies

Michael Kain , Marjolaine Bodin , Simon Loury , Yao Chi , Julien Louis
Frontiers in Neuroinformatics, 2020, 14, pp.1-11. ⟨10.3389/fninf.2020.00020⟩
Journal articles hal-02888669v1
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A Multicenter Preclinical MRI Study: Definition of Rat Brain Relaxometry Reference Maps

Tristan Deruelle , F. Kober , Adriana Perles-Barbacaru , Thierry Delzescaux , Vincent Noblet
Frontiers in Neuroinformatics, 2020, 14, ⟨10.3389/fninf.2020.00022⟩
Journal articles hal-03008867v1

Modulation of visual hallucinations originating from deafferented occipital cortex by robotized transcranial magnetic stimulation

Brice Passera , Sylvain Harquel , Laurent Vercueil , Michel Dojat , Arnaud Attye
Clinical Neurophysiology, 2020, 131 (8), pp.1728-1730. ⟨10.1016/j.clinph.2020.04.009⟩
Journal articles hal-03344921v1

Neural circuits for long-range color filling-in

Peggy Gerardin , Clément Abbatecola , Frédéric Devinck , Henry Kennedy , Michel Dojat
NeuroImage, 2018, 181, pp.30 - 43. ⟨10.1016/j.neuroimage.2018.06.083⟩
Journal articles hal-01887326v1

Magnetic resonance imaging does not reveal structural alterations in the brain of grapheme-color synesthetes

Michel Dojat , Fabrizio Pizzagalli , Jean-Michel Hupé
PLoS ONE, 2018, 13 (4), pp.e0194422. ⟨10.1371/journal.pone.0194422⟩
Journal articles hal-02341947v1

Effects of background and contour luminance on the hue and brightness of the Watercolor effect

Peggy Gerardin , Michel Dojat , Kenneth Knoblauch , Frédéric Devinck
Vision Research, 2018, 144, pp.9 - 19. ⟨10.1016/j.visres.2018.01.003⟩
Journal articles hal-01764861v1
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Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Olivier Commowick , Audrey Istace , Michael Kain , Baptiste Laurent , Florent Leray
Scientific Reports, 2018, 8 (1), pp.13650. ⟨10.1038/s41598-018-31911-7⟩
Journal articles inserm-01847873v3
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Effects of aging on low luminance contrast processing in humans

Emmanuelle Bellot , Véronique Coizet , Jan Warnking , Kenneth Knoblauch , Elena Moro
Journal articles inserm-01341092v1
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Desperately seeking grey matter volume changes in sleep apnea: A methodological review of magnetic resonance brain voxel-based morphometry studies

Sebastien Celle , Chantal Delon-Martin , Frederic Roche , Jean-Claude Barthelemy , Jean-Louis Pépin
Sleep Medicine Reviews, 2016, ⟨10.1016/j.smrv.2015.03.001⟩
Journal articles inserm-02473139v1
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A Multilayer Ontology of Instruments for Neurological, Behavioral and Cognitive Assessments.

Bénédicte Batrancourt , Michel Dojat , Bernard Gibaud , Gilles Kassel
Neuroinformatics, 2015, 13 (1), pp.93-110. ⟨10.1007/s12021-014-9244-3⟩
Journal articles inserm-01069670v1
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A critical review of the neuroimaging literature on synesthesia

Jean-Michel Hupé , Michel Dojat
Frontiers in Human Neuroscience, 2015, 9, pp.1-37. ⟨10.3389/fnhum.2015.00103⟩
Journal articles inserm-01166891v1
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Quantitative evaluation of fMRI retinotopic maps, from V1 to V4, for cognitive experiments

Cécile Bordier , Jean-Michel Hupé , Michel Dojat
Frontiers in Human Neuroscience, 2015, 9, pp.277-289. ⟨10.3389/fnhum.2015.00277⟩
Journal articles inserm-01166889v1
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Contributions of contour frequency, amplitude, and luminance to the watercolor effect estimated by conjoint measurement Fr ed eric Devinck

Peggy Gerardin , Frédéric Devinck , Michel Dojat , Kenneth Knoblauch
Journal of Vision, 2014, pp.1-14. ⟨10.1167/14.4.9⟩
Journal articles inserm-01166901v1

Age-Related Differences in Spatial Frequency Processing during Scene Categorization.

Stephen Ramanoël , Louise Kauffmann , Emilie Cousin , Michel Dojat , Carole Peyrin
PLoS ONE, 2014, 10 (8), pp.e0134554. ⟨10.1371/journal.pone.0134554⟩
Journal articles hal-01196755v1
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The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Bjoern Menze , Andras Jakab , Stefan Bauer , Jayashree Kalpathy-Cramer , Keyvan Farahani
IEEE Transactions on Medical Imaging, 2014, 34 (10), pp.1993-2024. ⟨10.1109/TMI.2014.2377694⟩
Journal articles hal-00935640v2
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Quantifying the watercolor effect: from stimulus properties to neural models

Frédéric Devinck , Peggy Gerardin , Michel Dojat , Kenneth Knoblauch
Frontiers in Human Neuroscience, 2014, 8, pp.1-9. ⟨10.3389/fnhum.2014.00805⟩
Journal articles inserm-01166906v1
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Spatial selectivity of the watercolor effect

Frédéric Devinck , Peggy Gerardin , Michel Dojat , Kenneth Knoblauch
Journal of the Optical Society of America. A Optics, Image Science, and Vision, 2013, pp.A1-A6. ⟨10.1364/JOSAA.31.0000A1⟩
Journal articles inserm-01166904v1
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Local landmark alignment for high-resolution fMRI group studies: toward a fine cortical investigation of hand movements in human.

Fabrizio Pizzagalli , Guillaume Auzias , Chantal Delon-Martin , Michel Dojat
Journal of Neuroscience Methods, 2013, 218 (1), pp.83-95. ⟨10.1016/j.jneumeth.2013.05.005⟩
Journal articles inserm-00874380v1
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Fast joint detection-estimation of evoked brain activity in event-related fMRI using a variational approach

Lotfi Chaari , Thomas Vincent , Florence Forbes , Michel Dojat , Philippe Ciuciu
IEEE Transactions on Medical Imaging, 2013, 32 (5), pp.821-837. ⟨10.1109/TMI.2012.2225636⟩
Journal articles inserm-00753873v1
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Retinotopic and lateralized processing of spatial frequencies in human visual cortex during scene categorization.

Benoit Musel , Cécile Bordier , Michel Dojat , Cédric Pichat , Sylvie Chokron
Journal of Cognitive Neuroscience, 2013, 25 (8), pp.1315-31. ⟨10.1162/jocn_a_00397⟩
Journal articles hal-00827617v1

Use of Pattern-Information Analysis in Vision Science: A Pragmatic Examination

Mathieu J. Ruiz , Jean-Michel Hupé , Michel Dojat
Lecture Notes in Computer Science, 2012, 7588, pp.103-110
Journal articles hal-00766374v1

A BOLD signature of eyeblinks in the visual cortex.

Jean-Michel Hupé , Cécile Bordier , Michel Dojat
NeuroImage, 2012, 61 (1), pp.149-61. ⟨10.1016/j.neuroimage.2012.03.001⟩
Journal articles hal-00685970v1
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Use of maximum end-tidal CO(2) values to improve end-tidal CO(2) monitoring accuracy.

Fabrice Galia , Serge Brimioulle , Frederic Bonnier , Nicolas Vandenbergen , Michel Dojat
Respiratory Care, 2011, 56 (3), pp.278-83. ⟨10.4187/respcare.00837⟩
Journal articles inserm-00635391v1
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Temporal and Spatial Independent Component Analysis for fMRI Data Sets Embedded in the AnalyzeFMRI R Package

Cécile Bordier , Michel Dojat , Pierre Lafaye de Micheaux
Journal of Statistical Software, 2011, 44 (9), pp.1-24
Journal articles inserm-00659425v1
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The Neural Bases of Grapheme-Color Synesthesia Are Not Localized in Real Color-Sensitive Areas.

Jean-Michel Hupé , Cécile Bordier , Michel Dojat
Cerebral Cortex, 2011, epub ahead of print. ⟨10.1093/cercor/bhr236⟩
Journal articles inserm-00635382v1
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Bayesian Markov model for cooperative clustering: application to robust MRI brain scan segmentation

Florence Forbes , Scherrer Benoît , Dojat Michel
Journal de la Société Française de Statistique, 2011, 152 (3), pp.116-141
Journal articles inserm-00752896v1
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fMRI retinotopic mapping at 3 T: benefits gained from correcting the spatial distortions due to static field inhomogeneity.

Flor Vasseur , Chantal Delon-Martin , Cécile Bordier , Jan M. Warnking , Laurent Lamalle
Journal of vision (Charlottesville, Va.), 2010, 10 (12), pp.30. ⟨10.1167/10.12.30⟩
Journal articles inserm-00589249v1
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Agentification of Markov model-based segmentation: application to magnetic resonance brain scans.

Benoît Scherrer , Michel Dojat , Florence Forbes , Catherine Garbay
Artificial Intelligence in Medicine, 2009, 46 (1), pp.81-95. ⟨10.1016/j.artmed.2008.08.012⟩
Journal articles inserm-00381395v1
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Distributed local MRF models for tissue and structure brain segmentation

Benoît Scherrer , Florence Forbes , Catherine Garbay , Michel Dojat
IEEE Transactions on Medical Imaging, 2009, 28 (8), pp.1278-1295. ⟨10.1109/TMI.2009.2014459⟩
Journal articles inserm-00402265v1
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Towards an ontology for sharing medical images and regions of interest in neuroimaging.

Lynda Temal , Michel Dojat , Gilles Kassel , Bernard Gibaud
Journal of Biomedical Informatics, 2008, 41 (5), pp.766-78. ⟨10.1016/j.jbi.2008.03.002⟩
Journal articles inserm-00344293v1

Knowledge construction from time series data using a collaborative exploration approach

Thomas Guyet , Catherine Garbay , Michel Dojat
Journal of Biomedical Informatics, 2007, 40 (6), pp.672-687. ⟨10.1016/j.jbi.2007.09.006⟩
Journal articles inria-00461373v1
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Knowledge construction from time series data using a collaborative exploration system.

Thomas Guyet , Catherine Garbay , Michel Dojat
Journal of Biomedical Informatics, 2007, 40 (6), pp.672-87. ⟨10.1016/j.jbi.2007.09.006⟩
Journal articles inserm-00381739v1
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A multicenter randomized trial of computer-driven protocolized weaning from mechanical ventilation.

François Lellouche , Jordi Mancebo , Philippe Jolliet , Jean Roeseler , Fréderique Schortgen
American Journal of Respiratory and Critical Care Medicine, 2006, 174 (8), pp.894-900. ⟨10.1164/rccm.200511-1780OC⟩
Journal articles inserm-00388976v1
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Federating distributed and heterogeneous information sources in neuroimaging: the NeuroBase Project.

Christian Barillot , Habib Benali , Michel Dojat , Alban Gaignard , Bernard Gibaud
Studies in Health Technology and Informatics, 2006, 120, pp.3-13
Journal articles inserm-00141685v1
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Global integration of local color differences in transparency perception: An fMRI study.

Michel Dojat , Loÿs Piettre , Chantal Delon-Martin , Mathilde Pachot-Clouard , Christoph Segebarth
Visual Neuroscience, 2006, 23 (3-4), pp.357-64. ⟨10.1017/S0952523806233200⟩
Journal articles inserm-00131774v1
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Computer-driven management of prolonged mechanical ventilation and weaning: a pilot study.

Lila Bouadma , François Lellouche , Belen Cabello , Solenne Taillé , Jordi Mancebo
Intensive Care Medicine, 2005, 31 (10), pp.1446-50. ⟨10.1007/s00134-005-2766-2⟩
Journal articles inserm-00391138v1
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Timing of interactions across the visual field in the human cortex.

S. Vanni , Michel Dojat , Jan M. Warnking , Chantal Delon-Martin , Christoph Segebarth
NeuroImage, 2004, 21 (3), pp.818-28. ⟨10.1016/j.neuroimage.2003.10.035⟩
Journal articles inserm-00402337v1
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Sequence of pattern onset responses in the human visual areas: an fMRI constrained VEP source analysis.

S. Vanni , Jan M. Warnking , Michel Dojat , Chantal Delon-Martin , Jean Bullier
NeuroImage, 2004, 21 (3), pp.801-17. ⟨10.1016/j.neuroimage.2003.10.047⟩
Journal articles inserm-00402335v1
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Artificial intelligence in neuroimaging: four challenges to improve interpretation of brain images.

Michel Dojat
Artificial Intelligence in Medicine, 2004, 30 (2), pp.91-5. ⟨10.1016/j.artmed.2003.12.001⟩
Journal articles inserm-00402364v1
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Statistical shape modeling of low level visual area borders.

Isabelle Corouge , Michel Dojat , Christian Barillot
Medical Image Analysis, 2004, 8 (3), pp.353-60. ⟨10.1016/j.media.2004.06.023⟩
Journal articles inserm-00402298v1
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Automated segmentation of human brain MR images using a multi-agent approach.

Nathalie Richard , Michel Dojat , Catherine Garbay
Artificial Intelligence in Medicine, 2004, 30 (2), pp.153-75
Journal articles inserm-00402306v1
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fMRI retinotopic mapping--step by step.

Jan M. Warnking , Michel Dojat , Anne Guérin-Dugué , Chantal Delon-Martin , Serge Olympieff
NeuroImage, 2002, 17 (4), pp.1665-83
Journal articles inserm-00402394v1
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Knowledge-based systems for automatic ventilatory management.

Michel Dojat , Laurent J. Brochard
Respiratory Care Clinics, 2001, 7 (3), pp.379-96, viii
Journal articles inserm-00402401v1
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A UMLS-based knowledge acquisition tool for rule-based clinical decision support system development.

Soumeya L. Achour , Michel Dojat , Claire Rieux , Philippe Bierling , Eric Lepage
Journal of the American Medical Informatics Association, 2001, 8 (4), pp.351-60
Journal articles inserm-00402405v1
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Clinical evaluation of a computer-controlled pressure support mode.

Michel Dojat , Alain Harf , Dominique Touchard , François Lemaire , Laurence Brochard
American Journal of Respiratory and Critical Care Medicine, 2000, 161 (4 Pt 1), pp.1161-6
Journal articles inserm-00402420v1
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A cooperative framework for segmentation of MRI brain scans.

Laurence Germond , Michel Dojat , Chris Taylor , Catherine Garbay
Artificial Intelligence in Medicine, 2000, 20 (1), pp.77-93
Journal articles inserm-00402412v1
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Moving illusory contours activate primary visual cortex: an fMRI study.

Mohamed Seghier , Michel Dojat , Chantal Delon-Martin , Christophe Rubin , Jan M. Warnking
Cerebral Cortex, 2000, 10 (7), pp.663-70
Journal articles inserm-00402417v1
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Scenario recognition for temporal reasoning in medical domains

Michel Dojat , Nicolas Ramaux , Dominique Fontaine
Artificial Intelligence in Medicine, 1998, 14 (1-2), pp.139-55. ⟨10.1016/S0933-3657(98)00020-7⟩
Journal articles inserm-00402424v1
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Using a general theory of time and change in patient monitoring: experiment and evaluation.

Luca Chittaro , Michel Dojat
Computers in Biology and Medicine, 1997, 27 (5), pp.435-52
Journal articles inserm-00402432v1
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NéoGanesh: a working system for the automated control of assisted ventilation in ICUs.

Michel Dojat , François Pachet , Zahia Guessoum , Dominique Touchard , Alain Harf
Artificial Intelligence in Medicine, 1997, 11 (2), pp.97-117
Journal articles inserm-00402426v1
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Evaluation of a knowledge-based system providing ventilatory management and decision for extubation.

Michel Dojat , Alain Harf , Dominique Touchard , Martine Laforest , François Lemaire
American Journal of Respiratory and Critical Care Medicine, 1996, 153 (3), pp.997-1004
Journal articles inserm-00402429v1
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A knowledge-based system for assisted ventilation of patients in intensive care units.

Michel Dojat , Laurence Brochard , François Lemaire , Alain Harf
International Journal of Clinical Monitoring and Computing, 1992, 9 (4), pp.239-50
Journal articles inserm-00402430v1
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Pourquoi et comment favoriser le partage en neuroimagerie ?

Michel Dojat
Annales des Mines, 2021
Book sections hal-03273728v1
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Imageurs, encore un effort si vous voulez partager vos données !

Michel Dojat
Ouvrage collectif sur les nouvelles imageries pour la santé, inPress
Book sections hal-03273927v1
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Chapitre 8 - Conscience sans Cortex

Michel Dojat , Manik Bhattacharjee , Christian Graff
La conscience - Travaux et réflexions du collectif CARMEN (Conscience Attention et Représentation MENtale), inPress
Book sections hal-03277509v1
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Traumatic Brain Lesion Quantification based on Mean Diffusivity Changes

Christophe Maggia , Thomas Mistral , Senan Doyle , Florence Forbes , Alexandre Krainik
Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, BrainLes (MICCAI), 10670, Springer, pp.88-99, 2018, Lecture Notes in Computer Science, ⟨10.1007/978-3-319-75238-9_8⟩
Book sections hal-01704679v1
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Automatic multiple sclerosis lesion segmentation with P-LOCUS

Senan Doyle , Florence Forbes , Michel Dojat
Proceedings of the 1st MICCAI Challenge on Multiple Sclerosis Lesions Segmentation Challenge Using a Data Management and Processing Infrastructure — MICCAI-MSSEG, pp.17-21, 2016
Book sections inserm-01417434v1
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Assessment of Tissue Injury in Severe Brain Trauma

Christophe Maggia , Senan Doyle , Florence Forbes , Olivier Heck , Irène Troprès
Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. , 9556, Springer International Publishing, pp.57-68, 2016, Lecture Notes in Computer Science, 978-3-319-30857-9. ⟨10.1007/978-3-319-30858-6_6⟩
Book sections hal-01423467v1
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A Joint Bayesian Framework for MR Brain Scan Tissue and Structure Segmentation Based on Distributed Markovian Agents

Benoît Scherrer , Florence Forbes , Catherine Garbay , Michel Dojat
Isabelle Bichindaritz, Sachin Vaidya, Ashlesha Jain, and Lakhmi C. Jain. Computational Intelligence in Healthcare 4, Springer, pp.81-101, 2010, Studies in Computational Intelligence, ⟨10.1007/978-3-642-14464-6_5⟩
Book sections inserm-00659300v1
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Radiation-induced neurotoxicity assessed by spatio-temporal modelling combined with artificial Intelligence after brain radiotherapy: the RADIO-AIDE project

Sophie Ancelet , Cecilia Damon , Théo Silvestre , Alice Bressand , Michel Dojat
ISoRED 2023 - International Society for Radiation Epidemiology and Dosimetry 1st meeting, May 2023, Sitges, Spain. 2023
Conference poster irsn-04200854v1
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Nodal statistics-based structural pattern detection for graph collections characterization

Lucrezia Carboni , Michel Dojat , Sophie Achard
Conference of Complex System, Oct 2022, Palma de Mallorca, Spain.
Conference poster hal-03866319v1
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Anomaly detection in the MRI data of newly diagnosed Parkinsonian patients

Verónica Muñoz Ramírez , Florence Forbes , Alexis Arnaud , Elena Moro , Michel Dojat
4e congrès de la Société Française de Résonance Magnétique en Biologie et Médecine - SFRMBM 2019, Mar 2019, Strasbourg, France.
Conference poster hal-02436613v1

Optimisation de la procédure de cartographie rétinotopique par IRMf pour une application clinique

Stephen Ramanoël , Louise Kauffmann , Carole Peyrin , Michel Dojat
Congrès de la Société Française de Résonance Magnétique en Biologie et Médecine, Mar 2015, Grenoble, France
Conference poster hal-01982419v1

Age-related differences in spatial frequency processing during scene categorization

Stephen Ramanoël , Louise Kauffmann , Emilie Cousin , Michel Dojat , Carole Peyrin
Organization of Human Brain Mapping, Jun 2015, Honolulu, United States
Conference poster hal-01982484v1

Effect of RMS contrast normalization on the retinotopic processing of spatial frequencies during scene categorization

Stephen Ramanoël , Louise Kauffmann , Nathalie Guyader , Alan Chauvin , Michel Dojat
Vision Sciences Society Annual Meeting, May 2014, St Pete Beach, United States
Conference poster hal-01982512v1
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MSSEG-2 challenge proceedings: Multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure

Olivier Commowick , Frédéric Cervenansky , François Cotton , Michel Dojat
MICCAI 2021 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2021, Strasbourg, France. , pp.126, 2021
Proceedings hal-03358968v3