Mohamad Harastani

15
Documents

Publications

Publications

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Template Learning: deep learning with domain randomization for particle picking in cryo-electron tomography

Mohamad Harastani , Gurudatt Patra , Charles Kervrann , Mikhail Eltsov

Nature Communications, 2025, 16 (8833), pp.1-15. ⟨10.1038/s41467-025-63895-0⟩

Article dans une revue hal-04874266v1
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Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM

D Herreros , J M Krieger , Y Fonseca , P Conesa , M Harastani et al.

Acta crystallographica Section D : Structural biology [1993-..], 2023, 79, pp.569 - 584. ⟨10.1107/s2059798323004497⟩

Article dans une revue hal-04147629v1
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MDSPACE and MDTOMO Software for Extracting Continuous Conformational Landscapes from Datasets of Single Particle Images and Subtomograms Based on Molecular Dynamics Simulations: Latest Developments in ContinuousFlex Software Package

Rémi Vuillemot , Mohamad Harastani , Ilyes Hamitouche , Slavica Jonic

International Journal of Molecular Sciences, 2023, 25 (1), pp.20. ⟨10.3390/ijms25010020⟩

Article dans une revue hal-04397719v1
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MDSPACE: Extracting continuous conformational landscapes from cryo-EM single particle datasets using 3D-to-2D flexible fitting based on Molecular Dynamics simulation

Rémi Vuillemot , Alex Mirzaei , Mohamad Harastani , Ilyes Hamitouche , Léo Fréchin et al.

Journal of Molecular Biology, 2023, pp.167951. ⟨10.1016/j.jmb.2023.167951⟩

Article dans une revue hal-03929029v1
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ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

Jorge Jiménez de la Morena , Pablo Conesa , Yunior Cesar Fonseca , Federico Pedro de Isidro-Gómez , David Herreros et al.

Journal of Structural Biology, 2022, 214 (3), pp.107872. ⟨10.1016/j.jsb.2022.107872⟩

Article dans une revue hal-03775680v1
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TomoFlow: Analysis of continuous conformational variability of macromolecules in cryogenic subtomograms based on 3D dense optical flow

Mohamad Harastani , Mikhail Eltsov , Amélie Leforestier , Slavica Jonic

Journal of Molecular Biology, 2022, 434 (2), pp.167381. ⟨10.1016/j.jmb.2021.167381⟩

Article dans une revue hal-03452809v1
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ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data

Mohamad Harastani , Rémi Vuillemot , Ilyes Hamitouche , Nima Barati Moghadam , Slavica Jonic

Journal of Structural Biology, 2022, 214 (4), pp.107906. ⟨10.1016/j.jsb.2022.107906⟩

Article dans une revue hal-03821777v1
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Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion

David Strelak , Amaya Jiménez-Moreno , José L Vilas , Erney Ramírez-Aportela , Ruben Sánchez-García et al.

Molecules, 2021, 26 (20), pp.6224. ⟨10.3390/molecules26206224⟩

Article dans une revue hal-03380603v1
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HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes

Mohamad Harastani , Mikhail Eltsov , Amélie Leforestier , Slavica Jonic

Frontiers in Molecular Biosciences, 2021, 8, pp.663121. ⟨10.3389/fmolb.2021.663121⟩

Article dans une revue hal-03217427v1
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Hybrid Electron Microscopy Normal Mode Analysis with Scipion

Mohamad Harastani , Carlos Oscar S. Sorzano , Slavica Jonic

Protein Science, 2020, 29 (1), pp.223-236. ⟨10.1002/pro.3772⟩

Article dans une revue hal-02388487v1
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Methamphetamine drug abuse and addiction: Effects on face asymmetry

Mohamad Harastani , Amine Benterkia , Farnaz Majid Zadeh , Amine Nait-Ali

Computers in Biology and Medicine, 2020, 116, pp.103475 -. ⟨10.1016/j.compbiomed.2019.103475⟩

Article dans une revue hal-03489500v1