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Template Learning: deep learning with domain randomization for particle picking in cryo-electron tomography
Mohamad Harastani
,
Gurudatt Patra
,
Charles Kervrann
,
Mikhail Eltsov
Article dans une revue
hal-04874266v1
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Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
D Herreros
,
J M Krieger
,
Y Fonseca
,
P Conesa
,
M Harastani
et al.
Article dans une revue
hal-04147629v1
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MDSPACE and MDTOMO Software for Extracting Continuous Conformational Landscapes from Datasets of Single Particle Images and Subtomograms Based on Molecular Dynamics Simulations: Latest Developments in ContinuousFlex Software Package
Rémi Vuillemot
,
Mohamad Harastani
,
Ilyes Hamitouche
,
Slavica Jonic
Article dans une revue
hal-04397719v1
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MDSPACE: Extracting continuous conformational landscapes from cryo-EM single particle datasets using 3D-to-2D flexible fitting based on Molecular Dynamics simulation
Rémi Vuillemot
,
Alex Mirzaei
,
Mohamad Harastani
,
Ilyes Hamitouche
,
Léo Fréchin
et al.
Article dans une revue
hal-03929029v1
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ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
Jorge Jiménez de la Morena
,
Pablo Conesa
,
Yunior Cesar Fonseca
,
Federico Pedro de Isidro-Gómez
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David Herreros
et al.
Article dans une revue
hal-03775680v1
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TomoFlow: Analysis of continuous conformational variability of macromolecules in cryogenic subtomograms based on 3D dense optical flow
Mohamad Harastani
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Mikhail Eltsov
,
Amélie Leforestier
,
Slavica Jonic
Article dans une revue
hal-03452809v1
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ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data
Mohamad Harastani
,
Rémi Vuillemot
,
Ilyes Hamitouche
,
Nima Barati Moghadam
,
Slavica Jonic
Article dans une revue
hal-03821777v1
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Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion
David Strelak
,
Amaya Jiménez-Moreno
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José L Vilas
,
Erney Ramírez-Aportela
,
Ruben Sánchez-García
et al.
Article dans une revue
hal-03380603v1
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HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes
Mohamad Harastani
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Mikhail Eltsov
,
Amélie Leforestier
,
Slavica Jonic
Article dans une revue
hal-03217427v1
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Hybrid Electron Microscopy Normal Mode Analysis with Scipion
Mohamad Harastani
,
Carlos Oscar S. Sorzano
,
Slavica Jonic
Article dans une revue
hal-02388487v1
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Methamphetamine drug abuse and addiction: Effects on face asymmetry
Mohamad Harastani
,
Amine Benterkia
,
Farnaz Majid Zadeh
,
Amine Nait-Ali
Article dans une revue
hal-03489500v1
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