Nicolas BIERNE

Nicolas Bierne

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nbierne
0000-0003-1856-3197
Google Scholar : https://scholar.google.fr/citations?hl=fr&user=XgJVSYIAAAAJ
IdRef : 067120458

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Publications

	Marine transmissible cancer navigates urbanised waters, threatening spillover Maurine Hammel , Fanny Touchard , E a V Burioli , Laure Paradis , Frédérique Cerqueira Proceedings of the Royal Society B: Biological Sciences, 2024, ⟨10.1098/rspb.2023.2541⟩ Journal articles hal-04116826v2
	For the love of fish, nature and people: A tribute to Professor Louis Bernatchez (1960–2023) Maren Wellenreuther , Anne-Laure Ferchaud , Luciano B. Beheregaray , Nicolas Bierne , Alberto S. Corrêa Evolutionary Applications, 2023, Evolutionary Applications, 16 (10), pp.1663-1670. ⟨10.1111/eva.13609⟩ Journal articles hal-04301899v1
	Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians Erika A.V. Burioli , Maurine Hammel , Emmanuel Vignal , Jeremie Vidal-Dupiol , Guillaume Mitta Open Biology, 2023, 13 (10), pp.230259. ⟨10.1098/rsob.230259⟩ Journal articles hal-04245345v1
	Urban rendezvous along the seashore: Ports as Darwinian field‐labs for studying marine evolution in the Anthropocene Fanny Touchard , Alexis Simon , Nicolas Bierne , Frédérique Viard Evolutionary Applications, 2022, Marine Evolutionary Biology, 16 (2), ⟨10.1111/eva.13443⟩ Journal articles hal-03716121v2
	Prevalence and polymorphism of a mussel transmissible cancer in Europe Maurine Hammel , Alexis Simon , Christine Arbiol , Antonio Villalba , Erika A.V. Burioli Molecular Ecology, 2022, 31 (3), pp.736-751. ⟨10.1111/mec.16052⟩ Journal articles hal-03335752v1
	Genetic parallelism between European flat oyster populations at the edge of their natural range Sylvie Lapègue , Céline Reisser , Estelle Harrang , Serge Heurtebise , Nicolas Bierne Evolutionary Applications, 2022, ⟨10.1111/eva.13449⟩ Journal articles hal-03823209v1
	Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla Térence Legrand , Anne Chenuil , Enrico Ser-Giacomi , Sophie Arnaud-Haond , Nicolas Bierne Nature Communications, 2022, 13, ⟨10.1038/s41467-022-33499-z⟩ Journal articles hal-03871531v1
	Introgression between highly divergent sea squirt genomes: an adaptive breakthrough? Christelle Fraïsse , Alan Le Moan , Camille Roux , Guillaume Dubois , Claire Daguin-Thiébaut Peer Community Journal, 2022, 2, pp.e54. ⟨10.24072/pcjournal.172⟩ Journal articles hal-03817700v1
	Pre-introduction introgression contributes to parallel differentiation and contrasting hybridisation outcomes between invasive and native marine mussels Iva Popovic , Nicolas Bierne , Federico Gaiti , Miloš Tanurdžić , Cynthia Riginos Journal of Evolutionary Biology, 2021, 34, pp.175-192. ⟨10.1111/jeb.13746⟩ Journal articles hal-03033473v1
	An introgression breakthrough left by an anthropogenic contact between two ascidians Alan Le Moan , Charlotte Roby , Christelle Fraïsse , Claire Daguin‐thiébaut , Nicolas Bierne Molecular Ecology, 2021, 30 (24), pp.6718 - 6732. ⟨10.1111/mec.16189⟩ Journal articles hal-03355754v2
	Traits of a mussel transmissible cancer are reminiscent of a parasitic life style Erika A.V. Burioli , Maurine Hammel , Nicolas Bierne , Guillaume Charrière , Frédéric Thomas Scientific Reports, 2021, 11 (1), pp.24110. ⟨10.1038/s41598-021-03598-w⟩ Journal articles hal-03498948v1
	How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels Alexis Simon , Christelle Fraïsse , Tahani El Ayari , Cathy Liautard‐haag , Petr Strelkov Journal of Evolutionary Biology, 2021, 34, pp.208-223. ⟨10.1111/jeb.13709⟩ Journal articles hal-03025054v1
	Agent-based modeling and genetics reveal the Limfjorden, Denmark, as a well-connected system for mussel larvae Ane Pastor , Janus Larsen , Flemming Thorbjørn Hansen , Alexis Simon , Nicolas Bierne Marine Ecology Progress Series, 2021, ⟨10.3354/meps13559⟩ Journal articles hal-03358213v1
	DILS: Demographic inferences with linked selection by using ABC Christelle Fraïsse , Iva Popovic , Clément Mazoyer , Bruno Spataro , Stephane Delmotte Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13323⟩ Journal articles hal-03156998v1
	Anthropogenic Hybridization at Sea: three evolutionary questions relevant to invasive species Frédérique Viard , Cynthia Riginos , Nicolas Bierne Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990), In press, ⟨10.1098/rstb.2019.0547⟩ Journal articles hal-02861012v1
	Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream Carine Rey , Audrey M. Darnaude , Franck Ferraton , Bruno Guinand , François Bonhomme Genes, 2020, 11 (4), pp.398. ⟨10.3390/genes11040398⟩ Journal articles hal-02887670v1
	Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels Alexis Simon , Christine Arbiol , Einar Eg Nielsen , Jérôme Couteau , Rossana Sussarellu Evolutionary Applications, 2020, 13, pp.575 - 599. ⟨10.1111/eva.12879⟩ Journal articles hal-02372503v2
	The geometry and genetics of hybridization Hilde Schneemann , Bianca de Sanctis , Denis Roze , Nicolas Bierne , John J Welch Evolution - International Journal of Organic Evolution, 2020, ⟨10.1101/862235⟩ Journal articles hal-03093393v1
	Twin introductions by independent invader mussel lineages are both associated with recent admixture with a native congener in Australia Iva Popovic , Ambrocio Melvin A. Matias , Nicolas Bierne , Cynthia Riginos Evolutionary Applications, 2020, 13, pp.515 - 532. ⟨10.1111/eva.12857⟩ Journal articles hal-02396363v1
	Implementation of various approaches to study the prevalence, incidence and progression of disseminated neoplasia in mussel stocks Erika A.V. Burioli , Suzanne Trancart , Alexis Simon , I. Bernard , Maud Charles Journal of Invertebrate Pathology, 2019, 168, pp.107271. ⟨10.1016/j.jip.2019.107271⟩ Journal articles hal-02404031v1
	A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe Marisa A Yonemitsu , Rachael M Giersch , Maria Polo-Prieto , Maurine Hammel , Alexis Simon eLife, 2019, 8, pp.e47788. ⟨10.7554/eLife.47788⟩ Journal articles hal-02350532v1
	Effective population size and heterozygosity-fitness correlations in a population of the Mediterranean lagoon ecotype of long-snouted seahorse Hippocampus guttulatus Florentine Riquet , Cathy Lieutard-Haag , Giulia Serluca , Lucy Woodall , Julien Claude Conservation Genetics, 2019, 20 (6), pp.1281-1288. ⟨10.1007/s10592-019-01210-3⟩ Journal articles hal-02402560v1
	Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages Florentine Riquet , Cathy Liautard‐haag , Lucy Woodall , Carmen Bouza , Patrick Louisy Evolution - International Journal of Organic Evolution, 2019, 73 (4), pp.817-835. ⟨10.1111/evo.13696⟩ Journal articles hal-02395914v1
	The hidden side of a major marine biogeographic boundary: a wide mosaic hybrid zone at the Atlantic-Mediterranean divide reveals the complex interaction between natural and genetic barriers in mussels Tahani El Ayari , Najoua Trigui El Menif , Bojan Hamer , Abigail E. Cahill , Nicolas Bierne Heredity, 2019, 122 (6), pp.770-784. ⟨10.1038/s41437-018-0174-y⟩ Journal articles hal-02403713v1
	The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies Christelle Fraïsse , Camille Roux , Pierre-Alexandre Gagnaire , Jonathan Romiguier , Nicolas Faivre PeerJ, 2018, 6, ⟨10.7717/peerj.5198⟩ Journal articles hal-01882981v1
	Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the ``grey zone'' of differentiation? Diane Bailleul , Alicia Mackenzie , Olivier Sacchi , Francois Poisson , Nicolas Bierne Evolutionary Applications, 2018, 11 (5), pp.614-630. ⟨10.1111/eva.12591⟩ Journal articles hal-02002468v1
	Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata Pierre-Alexandre Gagnaire , Jean-Baptiste Lamy , Florence Cornette , Serge Heurtebise , Lionel Degremont Genome Biology and Evolution, 2018, 10 (9), pp.2518-2534. ⟨10.1093/gbe/evy194⟩ Journal articles hal-02395878v1
	Coadapted genomes and selection on hybrids: Fisher's geometric model explains a variety of empirical patterns Alexis Simon , Nicolas Bierne , John J Welch Evolution Letters, 2018, 2 (5), pp.472-498. ⟨10.1002/evl3.66⟩ Journal articles hal-01865720v1
	Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion Nicolas Galtier , Camille Roux , Marjolaine Rousselle , Jonathan Romiguier , Emeric Figuet Molecular Biology and Evolution, 2018, 35 (5), pp.1092 - 1103. ⟨10.1093/molbev/msy015⟩ Journal articles hal-01806906v1
	The origin and remolding of genomic islands of differentiation in the European sea bass Maud Duranton , François Allal , Christelle Fraïsse , Nicolas Bierne , François Bonhomme Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-04963-6⟩ Journal articles hal-01825457v1
	Unexpected mosaic distribution of two hybridizing sibling lineages in the teleplanically dispersing snail Stramonita haemastoma suggests unusual postglacial redistribution or cryptic invasion Tahani El Ayari , Najoua Trigui El Menif , Carlos Saavedra , David Cordero , Frédérique Viard Ecology and Evolution, 2017, 7 (21), pp.9016-9026. ⟨10.1002/ece3.3418⟩ Journal articles hal-02395138v1
	Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow M. Ravinet , R. Faria , R. Butlin , J. Galindo , N. Bierne Journal of Evolutionary Biology, 2017, 30 (8), pp.1450-1477. ⟨10.1111/jeb.13047⟩ Journal articles hal-03081484v1
	Weird genotypes? Don't discard them, transmissible cancer could be an explanation Florentine Riquet , Alexis Simon , Nicolas Bierne Evolutionary Applications, 2017, 10 (2), pp.140 - 145. ⟨10.1111/eva.12439⟩ Journal articles hal-01865716v1
	Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow Camille Christe , Kai Stölting , Margot Paris , Christelle Fraїsse , Nicolas Bierne Molecular Ecology, 2017, 26 (1), pp.59-76. ⟨10.1111/mec.13765⟩ Journal articles hal-03078533v1
	Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence Camille Roux , Christelle Fraïsse , Jonathan Romiguier , Yoann Anciaux , Nicolas Galtier PLoS Biology, 2016, 14 (12), ⟨10.1371/journal.pbio.2000234⟩ Journal articles hal-01899028v1
	The genetics of speciation: Insights from Fisher's geometric model Christelle Fraïsse , P. Alexander Gunnarsson , Denis Roze , Nicolas Bierne , John Welch Evolution - International Journal of Organic Evolution, 2016, 70 (7), pp.1450-1464. ⟨10.1111/evo.12968⟩ Journal articles hal-03043482v1
	Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels Christelle Fraïsse , Khalid Belkhir , John Welch , Nicolas Bierne Molecular Ecology, 2016, 25 (1), pp.269-286. ⟨10.1111/mec.13299⟩ Journal articles hal-03043443v1
	Distinguishing contemporary hybridization from past introgression with post-genomic ancestry-informative SNPs in strongly differentiated Ciona species Sarah Bouchemousse , Cathy Liautard-Haag , Nicolas Bierne , Frédérique Viard Molecular Ecology, 2016, 25 (21), pp.5527-5542 ⟨10.1111/mec.13854⟩ Journal articles hal-01383805v1
	Editorial Dedicated population genomics for the silent world: the specific questions of marine population genetics Nicolas Bierne , François Bonhomme , Sophie Arnaud-Haond Current zoology, 2016, 62 (6), pp.545-550. ⟨10.1093/cz/zow107⟩ Journal articles hal-03035902v1
	Population genomics of sexual and asexual lineages in fissiparous ribbon worms (Lineus, Nemertea): hybridization, polyploidy and the Meselson effect S. Ament-Velásquez , E. Figuet , M. Ballenghien , E. Zattara , J. Norenburg Molecular Ecology, 2016, 25 (14), pp.3356 - 3369. ⟨10.1111/mec.13717⟩ Journal articles hal-01900641v1
	Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits M. Szulkin , P.-A. Gagnaire , N. Bierne , A. Charmantier Molecular Ecology, 2016, 25 (2), pp.542-558. ⟨10.1111/mec.13486⟩ Journal articles hal-02326694v1
	Does natural selection explain the fine scale genetic structure at the nuclear exon Glu-5' in blue mussels from Kerguelen ? K Gerard , C Roby , N Bierne , Philippe Borsa , Jean-Pierre Féral Ecology and Evolution, 2015, 5, pp.1456-1473. ⟨10.1002/ece3.1421⟩ Journal articles ird-01366543v1
	Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas Rossana Sussarellu , Arnaud Huvet , Sylvie Lapègue , Virgile Quillen , Christophe Lelong BMC Genomics, 2015, 16, pp.808. ⟨10.1186/s12864-015-1972-8⟩ Journal articles hal-01258474v1
	Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era Pierre-Alexandre Gagnaire , Thomas Broquet , D. Aurelle , Frédérique Viard , Ahmed Souissi Evolutionary Applications, 2015, 8 (8), pp.769-786. ⟨10.1111/eva.12288⟩ Journal articles hal-01187735v1
	Gene-flow in a mosaic hybrid zone: is local introgression adaptive? Christelle Fraïsse , Camille Roux , John Welch , Nicolas Bierne Genetics, 2014, 197 (3), pp.939-51. ⟨10.1534/genetics.114.161380⟩ Journal articles hal-03019253v1
	Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone Camille Roux , C Fraïsse , Vincent Castric , Xavier Vekemans , G H Pogson Journal of Evolutionary Biology, 2014, 27, pp.1662-1675. ⟨10.1111/jeb.12425⟩ Journal articles hal-01110882v1
	Comparative population genomics in animals uncovers the determinants of genetic diversity Jonathan Romiguier , P Gayral , M Ballenghien , Arnaud Bernard , V Cahais Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩ Journal articles hal-01313724v1
	European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation Mbaye Tine , Heiner Kuhl , Pierre-Alexandre Gagnaire , Bruno Louro , Erick Desmarais Nature Communications, 2014, 5 (1), ⟨10.1038/ncomms6770⟩ Journal articles hal-01922671v1
	Evidence for adaptation from standing genetic variation on an antimicrobial peptide gene in the mussel Mytilus edulis. Célia Gosset , Joana Do Nascimento , Marie-Thérèse Augé , Nicolas Bierne Molecular Ecology, 2014, 23 (12), pp.3000-12. ⟨10.1111/mec.12784⟩ Journal articles hal-03019544v1
	Contrasting patterns of genome-wide polymorphism in the native and invasive range of the marine mollusc Crepidula fornicata Florentine Riquet , Claire Daguin-Thiébaut , Marion Ballenghien , Nicolas Bierne , Frédérique Viard Molecular Ecology, 2013, 22 (4), pp.1003-1018. ⟨10.1111/mec.12161⟩ Journal articles hal-01218821v1
	The geography of introgression in a patchy environment and the thorn in the side of ecological speciation Nicolas Bierne , Pierre-Alexandre Gagnaire , Patrice David Current zoology, 2013, 59 (1), pp.72 - 86. ⟨10.1093/czoolo/59.1.72⟩ Journal articles hal-02395293v1
	A New Barrier to Dispersal Trapped Old Genetic Clines That Escaped the Easter Microplate Tension Zone of the Pacific Vent Mussels Sophie Plouviez , Jean-Baptiste Faure , Dominique Le Guen , François Lallier , Nicolas Bierne PLoS ONE, 2013, 8 (12), pp.e81555. ⟨10.1371/journal.pone.0081555⟩ Journal articles hal-01250916v1
	Hybridization and speciation R. Abbott , D. Albach , S. Ansell , J. Arntzen , S. Baird Journal of Evolutionary Biology, 2013, 26 (2), pp.229-246. ⟨10.1111/j.1420-9101.2012.02599.x⟩ Journal articles hal-01945468v1
	Evolutionary history of x-tox genes in three lepidopteran species: Origin, evolution of primary and secondary structure and alternative splicing, generating a repertoire of immune-related proteins Emmanuelle d'Alençon , Nicolas Bierne , Pierre-Alain Girard , Ghislaine Magdelenat , Sylvie Gimenez Insect Biochemistry and Molecular Biology, 2013, 43 (1), pp.54 - 64. ⟨10.1016/j.ibmb.2012.10.012⟩ Journal articles hal-01837250v1
	Reference-Free Population Genomics from Next- Generation Transcriptome Data and the Vertebrate- Invertebrate Gap Philippe Gayral , José Melo-Ferreira , Sylvain Glémin , Nicolas Bierne , Miguel Carneiro PLoS Genetics, 2013, 9 (4), pp.e1003457. ⟨10.1371/journal.pgen.1003457⟩ Journal articles hal-00866204v1
	SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies Eric Pante , Audrey Rohfritsch , Vanessa Becquet , Khalid Belkhir , Nicolas Bierne PLoS ONE, 2012, 7 (12), pp.e52302. ⟨10.1371/journal.pone.0052302⟩ Journal articles hal-00871859v1
	Speciation in the Deep Sea: Multi-Locus Analysis of Divergence and Gene Flow between Two Hybridizing Species of Hydrothermal Vent Mussels Baptiste Faure , Didier Jollivet , Arnaud Tanguy , François Bonhomme , Nicolas Bierne PLoS ONE, 2009, 4 (8), pp.e6485. ⟨10.1371/journal.pone.0006485⟩ Journal articles hal-01250942v1
	Genetic hitchhiking in a subdivided population of Mytilus edulis Matthieu Faure , Patrice David , François Bonhomme , Nicolas Bierne BMC Evolutionary Biology, 2008, 8, pp.art.164. ⟨10.1186/1471-2148-8-164⟩ Journal articles halsde-00475073v1
	Pleistocene separation of mitochondrial lineages of Mytilus spp. mussels from Northern and Southern Hemispheres and strong genetic differentiation among southern populations Karin Gérard , Nicolas Bierne , Philippe Borsa , Anne Chenuil , Jean-Pierre Féral Molecular Phylogenetics and Evolution, 2008, 49 (1), pp.84-91. ⟨10.1016/j.ympev.2008.07.006⟩ Journal articles halsde-00475209v1
	Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution Arnaud Tanguy , Nicolas Bierne , Carlos Saavedra , Benjamin Pina , Evelyne Bachère Gene, 2008, 408 (1-2), pp.27-36. ⟨10.1016/j.gene.2007.10.021⟩ Journal articles halsde-00450595v1
	Genomic reticulation indicates mixed ancestry in Southern-Hemisphere #Mytilus$ spp. mussels Philippe Borsa , Claire Daguin , Nicolas Bierne Biological Journal of the Linnean Society, 2007, 92 (4), pp.747-754. ⟨10.1111/j.1095-8312.2007.00917.x⟩ Journal articles ird-00288027v1
	Mark-recapture cloning: a straightforward and cost-effective cloning method for population genetics of single-copy nuclear DNA sequences in diploids Nicolas Bierne , Arnaud Tanguy , Matthieu Faure , Jean-Baptiste Faure , Elise David Molecular Ecology Notes, 2007, 7 (4), pp.562-566. ⟨10.1111/j.1471-8286.2007.01685.x⟩ Journal articles hal-00670005v1
	Single Nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas C. Sauvage , Nicolas Bierne , S. Lapegue , Pierre Boudry Gene, 2007, 406 (1-2), pp.13-22. ⟨10.1016/j.gene.2007.05.011⟩ Journal articles halsde-00450670v1
	Evidence for a slightly deleterious effect of intron polymorphisms at the EF1α gene in the deep-sea hydrothermal vent bivalve Bathymodiolus Jean-Baptiste Faure , Nicolas Bierne , Arnaud Tanguy , François Bonhomme , Didier Jollivet Gene, 2007, 406 (1-2), pp.99-107. ⟨10.1016/j.gene.2007.06.025⟩ Journal articles halsde-00424382v1
	Fitness landscapes support the dominance theory of post-zygotic isolation in the mussels Mytilus edulis and M. galloprovincialis Nicolas Bierne , François Bonhomme , Pierre Boudry , Marta Szulkin , Patrice David Proceedings of the Royal Society B: Biological Sciences, 2006, 273 (1591), pp.1253-1260. ⟨10.1098/rspb.2005.3440⟩ Journal articles halsde-00339571v1
	Variation in synonymous codon use and DNA polymorphism within the Drosophila genome Nicolas Bierne , A. Eyre-Walker Journal of Evolutionary Biology, 2006, 19 (1), pp.1-11. ⟨10.1111/j.1420-9101.2005.00996.x⟩ Journal articles halsde-00339620v1
	Direct selection on allozymes is not required to explain heterogeneity among marker loci across a Mytilus hybrid zone N Bierne , C Daguin , François Bonhomme , Patrice David , Philippe Borsa Molecular Ecology, 2003, 12, pp.2505-2510. ⟨10.1046/j.1365-294X.2003.01936.x⟩ Journal articles ird-01260447v1

	Genetic parameters for growth and colour traits in Pacific blue shrimp Litopenaeus stylirostris in a mixed family design with SNP parentage assignement in New-Caledonia Florian Enez , Bénédicte Lorgeoux , Mahunon H , Jérôme Bugeon , Marc Vandeputte 11. World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand Conference poster hal-03156790v1

	Connectivité et protection de la biodiversité marine Barbara Porro , Neil Alloncle , Nicolas Bierne , Sophie Arnaud-Haond 2019 Books hal-02404006v1

	Adaptation-adaptabilité : comprendre la réponse adaptative avec pour objectif de la prédire Nicolas Bierne , Malika Ainouche , M. Gouy , Pierre-Alexandre Gagnaire , Guillaume Mitta Prospectives de l’Institut Ecologie et environnement du CNRS : compte-rendu des journées des 22, 23 et 24 février 2017, CNRS, Bordeaux, CNRS, pp.127-141, 2017, Les Cahiers Prospectives CNRS INEE Book sections hal-03132863v1
	Evolution Moléculaire L. Duret , T. Bataillon , N. Bierne , Vincent Daubin , J. Dutheil sous la direction de Frédéric Thomas; Thierry Lefèvre; Michel Raymond. Biologie évolutive, De Boeck, pp.114-173, 2010, 978-2-8041-0161-9 Book sections hal-00539271v1

	How to best call the somatic mosaic tree? Nicolas Bierne 2022, pp.100024. ⟨10.24072/pci.genomics.100024⟩ Other publications hal-03844311v1
	Pressing NGS data through the mill of Kmer spectra and allelic coverage ratios in order to scan reproductive modes in non-model species Nicolas Bierne 2021, pp.100142. ⟨10.24072/pci.evolbiol.100142⟩ Other publications hal-03715291v1

	Divergence and gene flow history at two large chromosomal inversions involved in long-snouted seahorse ecotype formation Laura Meyer , Pierre Barry , Florentine Riquet , Andrew Foote , Clio Der Sarkissian 2023 Preprints, Working Papers, ... hal-04306022v1
	Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages Florentine Riquet , Cathy Liautard-Haag , Lucy Woodall , Carmen Bouza , Patrick Louisy 2018 Preprints, Working Papers, ... hal-01869948v1

	Marqueurs moléculaires et sélection en milieu marin: une relation indirecte Nicolas Bierne Génétique des populations [q-bio.PE]. Montpellier II, 2009 Habilitation à diriger des recherches tel-03034218v1

Nicolas BIERNE

Presentation

Publications

Marine transmissible cancer navigates urbanised waters, threatening spillover

For the love of fish, nature and people: A tribute to Professor Louis Bernatchez (1960–2023)

Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Urban rendezvous along the seashore: Ports as Darwinian field‐labs for studying marine evolution in the Anthropocene

Prevalence and polymorphism of a mussel transmissible cancer in Europe

Genetic parallelism between European flat oyster populations at the edge of their natural range

Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla

Introgression between highly divergent sea squirt genomes: an adaptive breakthrough?

Pre-introduction introgression contributes to parallel differentiation and contrasting hybridisation outcomes between invasive and native marine mussels

An introgression breakthrough left by an anthropogenic contact between two ascidians

Traits of a mussel transmissible cancer are reminiscent of a parasitic life style

How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels

Agent-based modeling and genetics reveal the Limfjorden, Denmark, as a well-connected system for mussel larvae

DILS: Demographic inferences with linked selection by using ABC

Anthropogenic Hybridization at Sea: three evolutionary questions relevant to invasive species

Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream

Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels

The geometry and genetics of hybridization

Twin introductions by independent invader mussel lineages are both associated with recent admixture with a native congener in Australia

Implementation of various approaches to study the prevalence, incidence and progression of disseminated neoplasia in mussel stocks

A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe

Effective population size and heterozygosity-fitness correlations in a population of the Mediterranean lagoon ecotype of long-snouted seahorse Hippocampus guttulatus

Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

The hidden side of a major marine biogeographic boundary: a wide mosaic hybrid zone at the Atlantic-Mediterranean divide reveals the complex interaction between natural and genetic barriers in mussels

The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies

Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the ``grey zone'' of differentiation?

Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata

Coadapted genomes and selection on hybrids: Fisher's geometric model explains a variety of empirical patterns

Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion

The origin and remolding of genomic islands of differentiation in the European sea bass

Unexpected mosaic distribution of two hybridizing sibling lineages in the teleplanically dispersing snail Stramonita haemastoma suggests unusual postglacial redistribution or cryptic invasion

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

Weird genotypes? Don't discard them, transmissible cancer could be an explanation

Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

The genetics of speciation: Insights from Fisher's geometric model

Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels

Distinguishing contemporary hybridization from past introgression with post-genomic ancestry-informative SNPs in strongly differentiated Ciona species

Editorial Dedicated population genomics for the silent world: the specific questions of marine population genetics

Population genomics of sexual and asexual lineages in fissiparous ribbon worms (Lineus, Nemertea): hybridization, polyploidy and the Meselson effect

Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits

Does natural selection explain the fine scale genetic structure at the nuclear exon Glu-5' in blue mussels from Kerguelen ?

Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

Gene-flow in a mosaic hybrid zone: is local introgression adaptive?

Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone

Comparative population genomics in animals uncovers the determinants of genetic diversity

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

Evidence for adaptation from standing genetic variation on an antimicrobial peptide gene in the mussel Mytilus edulis.

Contrasting patterns of genome-wide polymorphism in the native and invasive range of the marine mollusc Crepidula fornicata

The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

A New Barrier to Dispersal Trapped Old Genetic Clines That Escaped the Easter Microplate Tension Zone of the Pacific Vent Mussels

Hybridization and speciation

Evolutionary history of x-tox genes in three lepidopteran species: Origin, evolution of primary and secondary structure and alternative splicing, generating a repertoire of immune-related proteins

Reference-Free Population Genomics from Next- Generation Transcriptome Data and the Vertebrate- Invertebrate Gap

SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies

Speciation in the Deep Sea: Multi-Locus Analysis of Divergence and Gene Flow between Two Hybridizing Species of Hydrothermal Vent Mussels

Genetic hitchhiking in a subdivided population of Mytilus edulis

Pleistocene separation of mitochondrial lineages of Mytilus spp. mussels from Northern and Southern Hemispheres and strong genetic differentiation among southern populations

Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution

Genomic reticulation indicates mixed ancestry in Southern-Hemisphere #Mytilus$ spp. mussels

Mark-recapture cloning: a straightforward and cost-effective cloning method for population genetics of single-copy nuclear DNA sequences in diploids

Single Nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas

Evidence for a slightly deleterious effect of intron polymorphisms at the EF1α gene in the deep-sea hydrothermal vent bivalve Bathymodiolus

Fitness landscapes support the dominance theory of post-zygotic isolation in the mussels Mytilus edulis and M. galloprovincialis

Variation in synonymous codon use and DNA polymorphism within the Drosophila genome

Direct selection on allozymes is not required to explain heterogeneity among marker loci across a Mytilus hybrid zone

Genetic parameters for growth and colour traits in Pacific blue shrimp Litopenaeus stylirostris in a mixed family design with SNP parentage assignement in New-Caledonia

Connectivité et protection de la biodiversité marine

Adaptation-adaptabilité : comprendre la réponse adaptative avec pour objectif de la prédire

Evolution Moléculaire

How to best call the somatic mosaic tree?

Pressing NGS data through the mill of Kmer spectra and allelic coverage ratios in order to scan reproductive modes in non-model species

Divergence and gene flow history at two large chromosomal inversions involved in long-snouted seahorse ecotype formation

Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

Marqueurs moléculaires et sélection en milieu marin: une relation indirecte