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Nicolas BIERNE

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POSITION 2012-2020 Director of Research CNRS Institut des Sciences de l’Evolution - Montpellier (ISEM UMR 5554) Team BEM (Marine Biodiversity and Evolution), department "Génome-Phénome-Environment" Montpellier, France EDUCATION 2009 Capacitation to supervise research (HDR) University of Montpellier II Montpellier, France 1998-2001 PhD in Population Biology and Ecology (supervisors: F. Bonhomme and P. David) University of Montpellier II Montpellier, France 1993-1996 Master degree in Agronomy, and in Evolutionary Biology and Ecology (BEE-Montpellier) Institut National Agronomique Paris-Grignon (AgroParisTech) Paris and Montpellier, France PREVIOUS POSITIONS 2003-2012 CNRS researcher Institut des Sciences de l’Evolution - Montpellier (ISEM UMR 5554) Montpellier, France 2002-2003 Post-doc Centre for the Study of Evolution Brighton, United Kingdom


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Urban rendezvous along the seashore: Ports as Darwinian field‐labs for studying marine evolution in the Anthropocene

Fanny Touchard , Alexis Simon , Nicolas Bierne , Frédérique Viard
Evolutionary Applications, 2022, ⟨10.1111/eva.13443⟩
Journal articles hal-03716121v1
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Introgression between highly divergent sea squirt genomes: an adaptive breakthrough?

Christelle Fraïsse , Alan Le Moan , Camille Roux , Guillaume Dubois , Claire Daguin-Thiébaut et al.
Peer Community Journal, 2022, 2, pp.e54. ⟨10.24072/pcjournal.172⟩
Journal articles hal-03817700v1
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Spatial coalescent connectivity through multi-generation dispersal modelling predicts gene flow across marine phyla

Térence Legrand , Anne Chenuil , Enrico Ser-Giacomi , Sophie Arnaud-Haond , Nicolas Bierne et al.
Nature Communications, 2022, 13, ⟨10.1038/s41467-022-33499-z⟩
Journal articles hal-03871531v1
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Prevalence and polymorphism of a mussel transmissible cancer in Europe

Maurine Hammel , Alexis Simon , Christine Arbiol , Antonio Villalba , Erika A.V. Burioli et al.
Molecular Ecology, 2022, 31 (3), pp.736-751. ⟨10.1111/mec.16052⟩
Journal articles hal-03335752v1
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How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels

Alexis Simon , Christelle Fraïsse , Tahani El Ayari , Cathy Liautard‐haag , Petr Strelkov et al.
Journal of Evolutionary Biology, 2021, 34, pp.208-223. ⟨10.1111/jeb.13709⟩
Journal articles hal-03025054v1
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DILS: Demographic inferences with linked selection by using ABC

Christelle Fraïsse , Iva Popovic , Clément Mazoyer , Bruno Spataro , Stephane Delmotte et al.
Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13323⟩
Journal articles hal-03156998v1
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Agent-based modeling and genetics reveal the Limfjorden, Denmark, as a well-connected system for mussel larvae

Ane Pastor , Janus Larsen , Flemming Thorbjørn Hansen , Alexis Simon , Nicolas Bierne et al.
Marine Ecology Progress Series, 2021, ⟨10.3354/meps13559⟩
Journal articles hal-03358213v1
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An introgression breakthrough left by an anthropogenic contact between two ascidians

Alan Le Moan , Charlotte Roby , Christelle Fraisse , Claire Daguin-Thiébaut , Nicolas Bierne et al.
Molecular Ecology, In press, ⟨10.1111/mec.16189⟩
Journal articles hal-03355754v1
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Pre-introduction introgression contributes to parallel differentiation and contrasting hybridisation outcomes between invasive and native marine mussels

Iva Popovic , Nicolas Bierne , Federico Gaiti , Miloš Tanurdžić , Cynthia Riginos et al.
Journal of Evolutionary Biology, 2021, 34, pp.175-192. ⟨10.1111/jeb.13746⟩
Journal articles hal-03033473v1
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Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels

Alexis Simon , Christine Arbiol , Einar Eg Nielsen , Jérôme Couteau , Rossana Sussarellu et al.
Evolutionary Applications, 2020, 13, pp.575 - 599. ⟨10.1111/eva.12879⟩
Journal articles hal-02372503v2
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Twin introductions by independent invader mussel lineages are both associated with recent admixture with a native congener in Australia

Iva Popovic , Ambrocio Melvin A. Matias , Nicolas Bierne , Cynthia Riginos
Evolutionary Applications, 2020, 13, pp.515 - 532. ⟨10.1111/eva.12857⟩
Journal articles hal-02396363v1
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The geometry and genetics of hybridization

Hilde Schneemann , Bianca de Sanctis , Denis Roze , Nicolas Bierne , John J Welch et al.
Evolution - International Journal of Organic Evolution, 2020, ⟨10.1101/862235⟩
Journal articles hal-03093393v1
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Anthropogenic Hybridization at Sea: three evolutionary questions relevant to invasive species

Frédérique Viard , Cynthia Riginos , Nicolas Bierne
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990), inPress, ⟨10.1098/rstb.2019.0547⟩
Journal articles hal-02861012v1
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Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream

Carine Rey , Audrey M. Darnaude , Franck Ferraton , Bruno Guinand , François Bonhomme et al.
Genes, 2020, 11 (4), pp.398. ⟨10.3390/genes11040398⟩
Journal articles hal-02887670v1
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Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

Florentine Riquet , Cathy Liautard‐haag , Lucy Woodall , Carmen Bouza , Patrick Louisy et al.
Evolution - International Journal of Organic Evolution, 2019, 73 (4), pp.817-835. ⟨10.1111/evo.13696⟩
Journal articles hal-02395914v1
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Effective population size and heterozygosity-fitness correlations in a population of the Mediterranean lagoon ecotype of long-snouted seahorse Hippocampus guttulatus

Florentine Riquet , Cathy Lieutard-Haag , Giulia Serluca , Lucy Woodall , Julien Claude et al.
Conservation Genetics, 2019, 20 (6), pp.1281-1288. ⟨10.1007/s10592-019-01210-3⟩
Journal articles hal-02402560v1
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Implementation of various approaches to study the prevalence, incidence and progression of disseminated neoplasia in mussel stocks

Erika A.V. Burioli , Suzanne Trancart , Alexis Simon , I. Bernard , Maud Charles et al.
Journal of Invertebrate Pathology, 2019, 168, pp.107271. ⟨10.1016/j.jip.2019.107271⟩
Journal articles hal-02404031v1
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The hidden side of a major marine biogeographic boundary: a wide mosaic hybrid zone at the Atlantic-Mediterranean divide reveals the complex interaction between natural and genetic barriers in mussels

Tahani El Ayari , Najoua Trigui El Menif , Bojan Hamer , Abigail E. Cahill , Nicolas Bierne et al.
Heredity, 2019, 122 (6), pp.770-784. ⟨10.1038/s41437-018-0174-y⟩
Journal articles hal-02403713v1
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A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe

Marisa A Yonemitsu , Rachael M Giersch , Maria Polo-Prieto , Maurine Hammel , Alexis Simon et al.
eLife, 2019, 8, pp.e47788. ⟨10.7554/eLife.47788⟩
Journal articles hal-02350532v1
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Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata

Pierre-Alexandre Gagnaire , Jean-Baptiste Lamy , Florence Cornette , Serge Heurtebise , Lionel Degremont et al.
Genome Biology and Evolution, 2018, 10 (9), pp.2518-2534. ⟨10.1093/gbe/evy194⟩
Journal articles hal-02395878v1
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Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the ``grey zone'' of differentiation?

Diane Bailleul , Alicia Mackenzie , Olivier Sacchi , Francois Poisson , Nicolas Bierne et al.
Evolutionary Applications, 2018, 11 (5), pp.614-630. ⟨10.1111/eva.12591⟩
Journal articles hal-02002468v1
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Coadapted genomes and selection on hybrids: Fisher's geometric model explains a variety of empirical patterns

Alexis Simon , Nicolas Bierne , John J Welch
Evolution Letters, 2018, 2 (5), pp.472-498. ⟨10.1002/evl3.66⟩
Journal articles hal-01865720v1
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Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion

Nicolas Galtier , Camille Roux , Marjolaine Rousselle , Jonathan Romiguier , Emeric Figuet et al.
Molecular Biology and Evolution, 2018, 35 (5), pp.1092 - 1103. ⟨10.1093/molbev/msy015⟩
Journal articles hal-01806906v1
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The origin and remolding of genomic islands of differentiation in the European sea bass

Maud Duranton , François Allal , Christelle Fraïsse , Nicolas Bierne , François Bonhomme et al.
Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-04963-6⟩
Journal articles hal-01825457v1
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The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies

Christelle Fraïsse , Camille Roux , Pierre-Alexandre Gagnaire , Jonathan Romiguier , Nicolas Faivre et al.
PeerJ, 2018, 6, ⟨10.7717/peerj.5198⟩
Journal articles hal-01882981v1
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Unexpected mosaic distribution of two hybridizing sibling lineages in the teleplanically dispersing snail Stramonita haemastoma suggests unusual postglacial redistribution or cryptic invasion

Tahani El Ayari , Najoua Trigui El Menif , Carlos Saavedra , David Cordero , Frédérique Viard et al.
Ecology and Evolution, 2017, 7 (21), pp.9016-9026. ⟨10.1002/ece3.3418⟩
Journal articles hal-02395138v1

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M. Ravinet , R. Faria , R. Butlin , J. Galindo , N. Bierne et al.
Journal of Evolutionary Biology, 2017, 30 (8), pp.1450-1477. ⟨10.1111/jeb.13047⟩
Journal articles hal-03081484v1
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Weird genotypes? Don't discard them, transmissible cancer could be an explanation

Florentine Riquet , Alexis Simon , Nicolas Bierne
Evolutionary Applications, 2017, 10 (2), pp.140 - 145. ⟨10.1111/eva.12439⟩
Journal articles hal-01865716v1

Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow

Camille Christe , Kai Stölting , Margot Paris , Christelle Fraїsse , Nicolas Bierne et al.
Molecular Ecology, 2017, 26 (1), pp.59-76. ⟨10.1111/mec.13765⟩
Journal articles hal-03078533v1
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Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits

M. Szulkin , P.-A. Gagnaire , N. Bierne , A. Charmantier
Molecular Ecology, 2016, 25 (2), pp.542-558. ⟨10.1111/mec.13486⟩
Journal articles hal-02326694v1
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Distinguishing contemporary hybridization from past introgression with post-genomic ancestry-informative SNPs in strongly differentiated Ciona species

Sarah Bouchemousse , Cathy Liautard-Haag , Nicolas Bierne , Frédérique Viard
Molecular Ecology, 2016, 25 (21), pp.5527-5542 ⟨10.1111/mec.13854⟩
Journal articles hal-01383805v1
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Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

Camille Roux , Christelle Fraïsse , Jonathan Romiguier , Yoann Anciaux , Nicolas Galtier et al.
PLoS Biology, 2016, 14 (12), ⟨10.1371/journal.pbio.2000234⟩
Journal articles hal-01899028v1

Local interspecies introgression is the main cause of extreme levels of intraspecific differentiation in mussels

Christelle Fraïsse , Khalid Belkhir , John Welch , Nicolas Bierne
Molecular Ecology, 2016, 25 (1), pp.269-286. ⟨10.1111/mec.13299⟩
Journal articles hal-03043443v1

The genetics of speciation: Insights from Fisher's geometric model

Christelle Fraïsse , P. Alexander Gunnarsson , Denis Roze , Nicolas Bierne , John Welch et al.
Evolution - International Journal of Organic Evolution, 2016, 70 (7), pp.1450-1464. ⟨10.1111/evo.12968⟩
Journal articles hal-03043482v1

Population genomics of sexual and asexual lineages in fissiparous ribbon worms (Lineus, Nemertea): hybridization, polyploidy and the Meselson effect

S. Ament-Velásquez , E. Figuet , M. Ballenghien , E. Zattara , J. Norenburg et al.
Molecular Ecology, 2016, 25 (14), pp.3356 - 3369. ⟨10.1111/mec.13717⟩
Journal articles hal-01900641v1
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Editorial Dedicated population genomics for the silent world: the specific questions of marine population genetics

Nicolas Bierne , François Bonhomme , Sophie Arnaud-Haond
Current zoology, 2016, 62 (6), pp.545-550. ⟨10.1093/cz/zow107⟩
Journal articles hal-03035902v1
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Does natural selection explain the fine scale genetic structure at the nuclear exon Glu-5' in blue mussels from Kerguelen ?

K Gerard , C Roby , N Bierne , Philippe Borsa , J.-P Féral et al.
Ecology and Evolution, 2015, 5, pp.1456-1473. ⟨10.1002/ece3.1421⟩
Journal articles ird-01366543v1
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Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas

Rossana Sussarellu , Arnaud Huvet , Sylvie Lapègue , Virgile Quillen , Christophe Lelong et al.
BMC Genomics, 2015, 16, pp.808. ⟨10.1186/s12864-015-1972-8⟩
Journal articles hal-01258474v1
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Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

Pierre-Alexandre Gagnaire , Thomas Broquet , D. Aurelle , Frédérique Viard , Ahmed Souissi et al.
Evolutionary Applications, 2015, 8 (8), pp.769-786. ⟨10.1111/eva.12288⟩
Journal articles hal-01187735v1

Gene-flow in a mosaic hybrid zone: is local introgression adaptive?

Christelle Fraïsse , Camille Roux , John Welch , Nicolas Bierne
Genetics, 2014, 197 (3), pp.939-51. ⟨10.1534/genetics.114.161380⟩
Journal articles hal-03019253v1

Comparative population genomics in animals uncovers the determinants of genetic diversity

Jonathan Romiguier , P Gayral , M Ballenghien , Arnaud Bernard , V Cahais et al.
Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩
Journal articles hal-01313724v1
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European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

Mbaye Tine , Heiner Kuhl , Pierre-Alexandre Gagnaire , Bruno Louro , Erick Desmarais et al.
Nature Communications, 2014, 5 (1), ⟨10.1038/ncomms6770⟩
Journal articles hal-01922671v1

Evidence for adaptation from standing genetic variation on an antimicrobial peptide gene in the mussel Mytilus edulis.

Célia Gosset , Joana Do Nascimento , Marie-Thérèse Augé , Nicolas Bierne
Molecular Ecology, 2014, 23 (12), pp.3000-12. ⟨10.1111/mec.12784⟩
Journal articles hal-03019544v1

Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone

Camille Roux , C Fraïsse , Vincent Castric , Xavier Vekemans , G H Pogson et al.
Journal of Evolutionary Biology, 2014, 27, pp.1662-1675. ⟨10.1111/jeb.12425⟩
Journal articles hal-01110882v1

Contrasting patterns of genome-wide polymorphism in the native and invasive range of the marine mollusc Crepidula fornicata

Florentine Riquet , Claire Daguin-Thiébaut , Marion Ballenghien , Nicolas Bierne , Frédérique Viard et al.
Molecular Ecology, 2013, 22 (4), pp.1003-1018. ⟨10.1111/mec.12161⟩
Journal articles hal-01218821v1
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Reference-Free Population Genomics from Next- Generation Transcriptome Data and the Vertebrate- Invertebrate Gap

Philippe Gayral , José Melo-Ferreira , Sylvain Glémin , Nicolas Bierne , Miguel Carneiro et al.
PLoS Genetics, 2013, 9 (4), pp.e1003457. ⟨10.1371/journal.pgen.1003457⟩
Journal articles hal-00866204v1

Evolutionary history of x-tox genes in three lepidopteran species: Origin, evolution of primary and secondary structure and alternative splicing, generating a repertoire of immune-related proteins

Emmanuelle d'Alençon , Nicolas Bierne , Pierre-Alain Girard , Ghislaine Magdelenat , Sylvie Gimenez et al.
Insect Biochemistry and Molecular Biology, 2013, 43 (1), pp.54 - 64. ⟨10.1016/j.ibmb.2012.10.012⟩
Journal articles hal-01837250v1
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A New Barrier to Dispersal Trapped Old Genetic Clines That Escaped the Easter Microplate Tension Zone of the Pacific Vent Mussels

Sophie Plouviez , Jean-Baptiste Faure , Dominique Le Guen , François Lallier , Nicolas Bierne et al.
PLoS ONE, 2013, 8 (12), pp.e81555. ⟨10.1371/journal.pone.0081555⟩
Journal articles hal-01250916v1
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The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

Nicolas Bierne , Pierre-Alexandre Gagnaire , Patrice David
Current zoology, 2013, 59 (1), pp.72 - 86. ⟨10.1093/czoolo/59.1.72⟩
Journal articles hal-02395293v1

Hybridization and speciation

R. Abbott , D. Albach , S. Ansell , J. Arntzen , S. Baird et al.
Journal of Evolutionary Biology, 2013, 26 (2), pp.229-246. ⟨10.1111/j.1420-9101.2012.02599.x⟩
Journal articles hal-01945468v1
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SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies

Eric Pante , Audrey Rohfritsch , Vanessa Becquet , Khalid Belkhir , Nicolas Bierne et al.
PLoS ONE, 2012, 7 (12), pp.e52302. ⟨10.1371/journal.pone.0052302⟩
Journal articles hal-00871859v1
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Speciation in the Deep Sea: Multi-Locus Analysis of Divergence and Gene Flow between Two Hybridizing Species of Hydrothermal Vent Mussels

Baptiste Faure , Didier Jollivet , Arnaud Tanguy , François Bonhomme , Nicolas Bierne et al.
PLoS ONE, 2009, 4 (8), pp.e6485. ⟨10.1371/journal.pone.0006485⟩
Journal articles hal-01250942v1
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Pleistocene separation of mitochondrial lineages of Mytilus spp. mussels from Northern and Southern Hemispheres and strong genetic differentiation among southern populations

Karin Gérard , Nicolas Bierne , Philippe Borsa , Anne Chenuil , Jean-Pierre Féral et al.
Molecular Phylogenetics and Evolution, 2008, 49 (1), pp.84-91. ⟨10.1016/j.ympev.2008.07.006⟩
Journal articles halsde-00475209v1

Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution

Arnaud Tanguy , Nicolas Bierne , Carlos Saavedra , Benjamin Pina , Evelyne Bachère et al.
Gene, 2008, 408 (1-2), pp.27-36. ⟨10.1016/j.gene.2007.10.021⟩
Journal articles halsde-00450595v1
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Genetic hitchhiking in a subdivided population of Mytilus edulis

Matthieu Faure , Patrice David , François Bonhomme , Nicolas Bierne
BMC Evolutionary Biology, 2008, 8, ⟨10.1186/1471-2148-8-164⟩
Journal articles halsde-00475073v1

Single Nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas

C. Sauvage , Nicolas Bierne , S. Lapegue , Pierre Boudry
Gene, 2007, 406 (1-2), pp.13-22. ⟨10.1016/j.gene.2007.05.011⟩
Journal articles halsde-00450670v1

Mark-recapture cloning: a straightforward and cost-effective cloning method for population genetics of single-copy nuclear DNA sequences in diploids

Nicolas Bierne , Arnaud Tanguy , Matthieu Faure , Jean-Baptiste Faure , Elise David et al.
Molecular Ecology Notes, 2007, 7 (4), pp.562-566. ⟨10.1111/j.1471-8286.2007.01685.x⟩
Journal articles hal-00670005v1

Evidence for a slightly deleterious effect of intron polymorphisms at the EF1α gene in the deep-sea hydrothermal vent bivalve Bathymodiolus

Jean-Baptiste Faure , Nicolas Bierne , Arnaud Tanguy , François Bonhomme , Didier Jollivet et al.
Gene, 2007, 406 (1-2), pp.99-107. ⟨10.1016/j.gene.2007.06.025⟩
Journal articles halsde-00424382v1
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Genomic reticulation indicates mixed ancestry in Southern-Hemisphere #Mytilus$ spp. mussels

Philippe Borsa , Claire Daguin , Nicolas Bierne
Biological Journal of the Linnean Society, 2007, 92 (4), pp.747-754. ⟨10.1111/j.1095-8312.2007.00917.x⟩
Journal articles ird-00288027v1

Fitness landscapes support the dominance theory of post-zygotic isolation in the mussels Mytilus edulis and M. galloprovincialis

Nicolas Bierne , François Bonhomme , Pierre Boudry , Marta Szulkin , Patrice David et al.
Proceedings of the Royal Society B: Biological Sciences, 2006, 273 (1591), pp.1253-1260. ⟨10.1098/rspb.2005.3440⟩
Journal articles halsde-00339571v1

Variation in synonymous codon use and DNA polymorphism within the Drosophila genome

Nicolas Bierne , A. Eyre-Walker
Journal of Evolutionary Biology, 2006, 19 (1), pp.1-11. ⟨10.1111/j.1420-9101.2005.00996.x⟩
Journal articles halsde-00339620v1
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Direct selection on allozymes is not required to explain heterogeneity among marker loci across a Mytilus hybrid zone

N Bierne , C Daguin , François Bonhomme , Patrice David , Philippe Borsa et al.
Molecular Ecology, 2003, 12, pp.2505-2510. ⟨10.1046/j.1365-294X.2003.01936.x⟩
Journal articles ird-01260447v1

Adaptation-adaptabilité : comprendre la réponse adaptative avec pour objectif de la prédire

Nicolas Bierne , Malika Ainouche , M. Gouy , Pierre-Alexandre Gagnaire , Guillaume Mitta et al.
Prospectives de l’Institut Ecologie et environnement du CNRS : compte-rendu des journées des 22, 23 et 24 février 2017, CNRS, Bordeaux, CNRS, pp.127-141, 2017, Les Cahiers Prospectives CNRS INEE
Book sections hal-03132863v1

Evolution Moléculaire

L. Duret , T. Bataillon , N. Bierne , Vincent Daubin , J. Dutheil et al.
sous la direction de Frédéric Thomas; Thierry Lefèvre; Michel Raymond. Biologie évolutive, De Boeck, pp.114-173, 2010, 978-2-8041-0161-9
Book sections hal-00539271v1
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Marqueurs moléculaires et sélection en milieu marin: une relation indirecte

Nicolas Bierne
Génétique des populations [q-bio.PE]. Montpellier II, 2009
Habilitation à diriger des recherches tel-03034218v1