
Nicolas Parisey
- Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
- Département Santé des Plantes et Environnement (DPT SPE)
- Institut de Génétique, Environnement et Protection des Plantes (IGEPP)
Presentation
After a PhD in systems biology, I was recruited to design and develop decision support systems for integrated crop protection. In this context, I first focused on the dynamics of crop pests and beneficials at the scale of agro-ecosystems. Quite naturally, I became interested in developing alternative control strategies. I thus worked on population models rooted in optimal foraging in order to propose plausible landscape rearrangements aiming at controling the selective value of populations of interest. After some maturation, I defended my Habilitation thesis, broaded my biological models of interest and decided to reinforce the link between my complex models and the data necessary for their applications. Since then, i worked on (i) the adaptation of statistical approaches for optimal population monitoring to maximize the information provided by each experiment and (ii) the development of quantitative imaging approaches for ecology and epidemiology to massify the available data.
Skills
Publications
Publications
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Biology-Informed inverse problems for insect pests detection using pheromone sensors2025
Preprints, Working Papers, ...
hal-04572831
v3
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Identifying fungal leaf spots on oilseed rape: could pictures help?2023
Preprints, Working Papers, ...
hal-04177263
v1
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Deep mechanistic model: Integrating deep learning and stochastic mechanistic approaches for Bovine Respiratory Diseases diagnosis and epidemiological forecastingConference of the Society for Veterinary Epidemiology and Preventive Medicine (SVEPM), Mar 2024, Uppsala, Sweden. pp.61-72
Conference papers
hal-04698205
v1
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Pest detection from a biology-informed inverse problem and pheromone sensorsDSABNS 2024 - 15th Conference on Dynamical Systems Applied to Biology and Natural Sciences, Feb 2024, Lisbonne, Portugal
Conference papers
hal-04481765
v1
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Quelle efficacité d’une gestion à une échelle paysagère large des abondances locales d’adventices? Une approche de modélisation à l’échelle du paysageSéminaire final du projet de recherche ANR CoSAC-Gestion des adventices dans un contexte de changement, Jan 2019, Paris, France. article issu d'un poster
Conference papers
hal-02737542
v1
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Landmarks Detection by Applying Deep Networks2018 1st International Conference on Multimedia Analysis and Pattern Recognition (MAPR), Apr 2018, Ho Chi Minh City, Vietnam. pp.1-6
Conference papers
hal-02000068
v1
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Towards landmarks prediction with Deep Network9th International Conference on Pattern Recognition Systems (ICPRS 2018), May 2018, Valparaíso, Chile. 15 (6 pp.)-15 (6 pp.)
Conference papers
hal-02000079
v1
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Landmarks Detection by Applying Deep Networks1st International Conference on Multimedia Analysis and Pattern Recognition (MAPR), Apr 2018, Ho Chi Minh City, Vietnam. ⟨10.1109/MAPR.2018.8337519⟩
Conference papers
hal-02737558
v1
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MAELab: a framework to automatize landmark estimationWSCG 2017, 25th International Conference on Computer Graphics, Visualization and Computer Vision, Plzen [Pilsen], Czech Republic, May 29-June 2, 2017, May 2017, Pilsen, Czech Republic. pp.153-158
Conference papers
hal-04418386
v1
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Modélisation du mouvement des chevreuils dans un paysage bocager simulé : premiers résultats, projetsColloque PAYOTTE 2017, Oct 2017, Paris, France. 31 p
Conference papers
hal-02737836
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MAELab: a framework to automatize landmark estimationWSCG 2017, May 2017, Plzen, Czech Republic
Conference papers
hal-01571440
v1
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SIFT descriptor to set landmarks on biological imagesGRETSI, Juan-Les-Pins, France, septembre 2017, Sep 2017, Juan-Les-Pins, France
Conference papers
hal-04296823
v1
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Utilisation de la modélisation statistique pour simuler la contribution des systèmes agricoles aux organisations du paysage et à la biodiversité : Exemple des carabes forestiers et de culturesColloque PAYOTTE 2017, réseau interdisciplinaire PAYOTE., Oct 2017, Paris, France
Conference papers
hal-02790265
v1
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Dynamiques de populations en milieu hétérogène : modèles et estimation de paramètresSéminaire "Ecologisation des systèmes de productions agricoles pour renforcer le contrôle biologique des bioagresseurs", Nov 2017, Paris, France
Conference papers
hal-02733519
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Introduction du séminaire. Le projet ANR Peerless : viabilité d’une gestion écologique renforcée de la santé des plantes dans les paysages agricolesSéminaire "Ecologisation des systèmes de productions agricoles pour renforcer le contrôle biologique des bioagresseurs", Nov 2017, Paris, France
Conference papers
hal-02734496
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Agriculture et continuités écologiquesQu’est-ce qui se trame en Bretagne ? Journée d’information et d’échanges sur la mise en place de la trame verte et bleue, Apr 2017, Vannes, France
Conference papers
hal-02788607
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Contribution of annual crops vs. semi-natural habitats to landscape connectivity for different types of carabid beetle communitiesIALE World congress 2015., Jul 2015, Portland, United States. 11 p
Conference papers
hal-01458650
v1
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Favoriser la dynamique d'un auxiliaire de culture Carabidae au sein d'une mosaïque agricoleColloque Agroécologie & Systèmes de Culture Innovants, Jan 2015, Les Ponts-de-Cé, France
Conference papers
hal-02800670
v1
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Comparison of statistical frameworks to study the relationship between landscape features and pest insect abundanceColloque PAYOTE 2014. Modélisation de paysages agricoles pour l’analyse et la simulation de processus, Sep 2014, Paris, France
Conference papers
hal-02743307
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Modèle Agriconnect un simulateur de paysage couplant modèle agronomique et modèle écologiqueSéminaire PAYOTE, 2014, Paris, France. 1 p
Conference papers
hal-01458682
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Prédation des pucerons par un cortège d’ennemis naturels sur Brassicacées légumières : quantification et facteurs de variation à l’échelle du paysage agricole5ème Réunion annuelle du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés), Nov 2012, Lyon (FR), France
Conference papers
hal-00924691
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Structure du paysage en parcelles de Brassicacées : impact sur les insectes phytophages et leurs ennemis naturels9ème Conférence Internationale sur les Ravageurs en Agriculture, Oct 2011, Montpellier (FR), France. non paginé
Conference papers
hal-00849133
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Structure du paysage et colonisation des parcelles de Brassicacées légumières par les insectes phytophages et leurs ennemis naturelsJournées techniques "Biodiversité fonctionnelle" GIE Fleurs et Plantes du Sud- Ouest., 2011, Bordeaux (FR), France
Conference papers
hal-00849134
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Elementary flux mode analysis of the central metabolism of plant cells7. International workshop on Computational Systems Biology, Jun 2010, Luxembourg, Luxembourg
Conference papers
hal-02752087
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Elementary mode analysis of the central metabolism of plant cells4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Conference papers
hal-02752805
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Simulation of Electron Transfer with a Shape-Based Grained Multi-Agent ModelAlife XII, Aug 2010, Odense, Denmark
Conference papers
hal-00629156
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Using Multi-Agent Systems to Design Internal Movements of ProteinsEvry Spring School on Modelling Complex Biological Systems in the Context of Genomics, May 2010, Evry, France. pp.157
Conference papers
hal-00631758
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Identification of functional hubs through metabolic networks12. International conference on the synthesis and simulation of lifing systems, Aug 2010, Odense, Denmark
Conference papers
hal-02754488
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TIM/WIM: A Set of Tools to Interface Modelling in Biology.European Conference on Object-Oriented Programming, Jul 2009, Genova, Italy
Conference papers
hal-00629019
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Multi-Agent Model for Simulation at the Subcellular LevelECAL 2009 - Darwin Meets von Neumann, Sep 2009, Budapest, Hungary
Conference papers
hal-00410968
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TIM, une interface de saisie pour les données du métabolisme3. Journées scientifiques RFMF, Feb 2008, Bordeaux, France
Conference papers
hal-02752505
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Mitochondrial OxydoReduction Simulation using Multi-Agent SystemEuropean Simulation and Modelling Conference (ESM), 2007, Malta. pp.385--390
Conference papers
hal-00308020
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Multi-Agent Design to Reduce Complexity of Biological Processes7th German Workshop on Artificial Life, 2006, Germany. pp.81-84
Conference papers
hal-00308019
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Simulation of mitochondrial metabolism using multi-agents systemAAMAS'05 (MAS*BIOMED'05), Jul 2005, Utrecht, Netherlands. 9p
Conference papers
hal-00353471
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Modeling biologic networks to use them with heterogeneous treatments.Modelling and Simulation of biological processes in the context of genomics, May 2003, France. pp.1186/1471
Conference papers
hal-00308272
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How to lock a model from a miscomposition of objects ?13th European Conference on Object-Oriented Programming, Jul 2003, Portugal. pp.23-28
Conference papers
hal-00308274
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Modeling biologic networks to use them with heterogeneous treatmentsModélisation et simulation de processus biologiques dans le contexte de la génomique, May 2003, France. pp.1186/1471
Conference papers
hal-00308273
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Imagerie pour la quantification de symptômes sur feuilles détachées.13e Rencontre de phytopathologie-mycologie (Journées Jean Chevaugeon), Sep 2022, AUSSOIS, France
Conference poster
hal-04164177
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Estimating landmarks on 2D images of beetle mandibles24th WSCG Conference on Computer Graphics, Visualization and Computer Vision,, Jun 2016, Pilsen, Czech Republic
Conference poster
hal-02000477
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Modélisation de paysages agricoles pour la simulation et l'analyse de processusModélisation de paysages agricoles pour la simulation et l’analyse de processus Colloque PAYOTE 2017, Oct 2017, Paris, France. 2017
Proceedings
hal-03768077
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Modélisation de paysages agricoles pour la simulation et l'analyse de processus38 p., 2014
Proceedings
hal-02800606
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A model-based approach to assess the effectiveness of pest biocontrol by natural enemies[University works] auto-saisine. 2016
Reports
hal-01609595
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