Laurent Noé
Présentation
Publications
Publications
|
|
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing15th International Symposium on Bioinformatics Research and Applications (ISBRA), Jun 2019, Barcelona, Spain. pp.208-219, ⟨10.1007/978-3-030-20242-2_18⟩ |
|
|
DiNAMO: Exact method for degenerate IUPAC motifs discovery, characterization of sequence-specific errorsJOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France |
SortMeRNA 2: ribosomal RNA classification for taxonomic assignationWorkshop on Recent Computational Advances in Metagenomics, ECCB 2014, Sep 2014, Strasbourg, France |
|
|
|
Non Ribosomal Peptides : A monomeric puzzleJOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. pp.143-150 |
SortMeRNA: a new software to filter total RNA for metatranscriptomic or RNA analysisJOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2012, Jul 2012, Rennes, France |
|
|
|
Subset seed extension to Protein BLASTBioinformatics 2011 - International Conference on Bioinformatics Models, Methods and Algorithms, Jan 2011, Rome, Italy. pp.149-158, ⟨10.5220/0003147601490158⟩ |
|
|
Seed design framework for mapping SOLiD readsRECOMB, Aug 2010, Lisbon, Portugal. pp.384-396, ⟨10.1007/978-3-642-12683-3_25⟩ |
|
|
Back-translation for discovering distant protein homologiesthe 9th International Workshop in Algorithms in Bioinformatics (WABI), Sep 2009, Philadelphia, United States. pp.108-120, ⟨10.1007/978-3-642-04241-6_10⟩ |
|
|
Improved sensitivity and reliability of anchor based genome alignmentJOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p |
|
|
Improved Sensitivity And Reliability Of Anchor Based Genome AlignmentJOBIM 2009 - 10es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36 |
|
|
Efficient seeding techniques for protein similarity searchProceedings of the 2nd International Conference BIRD, Jul 2008, Vienna, Austria. pp.466-478, ⟨10.1007/978-3-540-70600-7⟩ |
|
|
Protein similarity search with subset seeds on a dedicated reconfigurable hardwareParallel Bio-Computing, Sep 2007, Gdansk,, Poland |
|
|
Subset seed automatonCIAA 2007, Jul 2007, Prague, Czech Republic. pp.180-191, ⟨10.1007/978-3-540-76336-9_18⟩ |
|
|
A unifying framework for seed sensitivity and its application to subset seeds (Extended abstract)WABI, 2005, Majorca/Spain, Spain |
|
|
Recherches de motifs et de similarités en bioinformatique : modélisations, solutions logicielles et matériellesMajecSTIC 2005 : Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC, IRISA – IETR – LTSI, Nov 2005, Rennes/France, pp.18--37 |
Computer analysis of multiple repeats in bacteriaThe fourth International Conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, 2004, Novosibirsk, Russia, 5 p |
|
Improved hit criteria for DNA local alignmentProceedings of the 5th Open Days in Biology, Computer Science and Mathematics - JOBIM'2004, 2004, Montreal, Canada, 11 p |
|
|
|
Multi-seed lossless filtration (Extended abstract)Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching - CPM'2004, Jul 2004, Istambul, Turkey. pp.297-310, ⟨10.1007/11557067_21⟩ |
|
|
Estimating seed sensitivity on homogeneous alignments4th Symposium on Bioinformatics and bioengineering - BIBE'2004, May 2004, Taichung, Taiwan. pp.387-394, ⟨10.1109/BIBE.2004.1317369⟩ |
YASS : Enhancing the sensitivity of DNA similarity searchProceedings of the 4th International conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, Institute of Cytology and Genetics, 2004, Novosibirsk, Russia, pp.289-292 |
|
YASS : similarity search in DNA sequencesThe Seventh Annual International Conference on Research in Computational Molecular Biology - RECOMB'03, Apr 2003, Berlin, Germany, 1 p |
|
A new method of finding similarity regions in DNA sequencesEuropean Conference on Computational Biology - ECCB'2002, Oct 2002, Saarbrücken, Germany, pp.173-174 |
Sequence AlignmentFrom Sequences to Graphs: Discrete Methods and Structures for Bioinformatics, 3, Wiley, 2022, 9781789450668. ⟨10.1002/9781394169641.ch3⟩ |
|
Deciphering metatranscriptomic dataMethods in Molecular Biology, 1269, Springer, pp.279-291, 2015, RNA Bioinformatics, 978-1-4939-2290-1. ⟨10.1007/978-1-4939-2291-8_17⟩ |
|
|
Porechop_ABI: discovering unknown adapters in ONT sequencing reads for downstream trimming2022 |
|
|
Minimally-overlapping words for sequence similarity search2020 |
|
|
A unifying framework for seed sensitivity and its application to subset seeds[Research Report] RR-5374, INRIA. 2004, pp.21 |
|
|
YASS: Similarity search in DNA sequences[Research Report] RR-4852, INRIA. 2003, pp.20 |
|
|
Estimating seed sensitivity on homogeneous alignments[Research Report] RR-5047, INRIA. 2003, pp.17 |
Recherche de répétitions distantes dans les séquences[Stage] A02-R-296 || noe02b, 2002, 30 p |
|
|
Recherche de similarités dans les séquences d'ADN : modèles et algorithmes pour la conception de graines efficacesInformatique [cs]. Université Henri Poincaré - Nancy 1, 2005. Français. ⟨NNT : 2005NAN10118⟩ |