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Olivier Colliot

Olivier Colliot - Research Director at CNRS - ARAMIS Lab at the Paris Brain Institute (CNRS/Inria/Inserm/Sorbonne Universite)
Researcher identifiers


Research Director at [CNRS]( Head of the [ARAMIS Lab](, a joint team between [CNRS](, [Inria](, [Inserm]( and [University Pierre and Marie Curie]( at the [Paris Brain Institute (ICM)](, in co-direction with Stanley Durrleman. Homepage: <> Email:
Research Director at [CNRS]( Head of the [ARAMIS Lab](, a joint team between [CNRS](, [Inria](, [Inserm]( and [University Pierre and Marie Curie]( at the [Paris Brain Institute (ICM)](, in co-direction with Stanley Durrleman. Homepage: <> Email:

Research domains

Artificial Intelligence [cs.AI] Medical Imaging Machine Learning [cs.LG] Image Processing [eess.IV]


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Temporo-basal sulcal connections: a manual annotation protocol and an investigation of sexual dimorphism and heritability

Kevin de Matos , Claire Cury , Lydia Chougar , Lachlan T Strike , Thibault Rolland
Brain Structure and Function, 2023, pp.1-52. ⟨10.1007/s00429-023-02663-6⟩
Journal articles hal-04132176v1
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Automatic segmentation of the choroid plexuses: Method and validation in controls and patients with multiple sclerosis

Arya Yazdan-Panah , Marius Schmidt-Mengin , Vito A.G. Ricigliano , Théodore Soulier , Bruno Stankoff
Neuroimage-Clinical, 2023, 38, pp.103368. ⟨10.1016/j.nicl.2023.103368⟩
Journal articles hal-04026889v1
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Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Dario Saracino , Sebastian Ströer
Medical Image Analysis, inPress
Journal articles hal-03656136v2
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Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Adam Wild , Sébastian Ströer
Medical Image Analysis, 2022, 75, ⟨10.1016/⟩
Journal articles hal-03154792v4
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ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont
Computer Methods and Programs in Biomedicine, 2022, 220, pp.106818. ⟨10.1016/j.cmpb.2022.106818⟩
Journal articles hal-03351976v2
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Machine learning-based prediction of impulse control disorders in Parkinson's disease from clinical and genetic data

Johann Faouzi , Samir Bekadar , Fanny Artaud , Alexis Elbaz , Graziella Mangone
IEEE Open Journal of Engineering in Medicine and Biology, 2022, 3, pp.96 - 107. ⟨10.1109/OJEMB.2022.3178295⟩
Journal articles hal-03680714v2
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Parsimonious model for mass-univariate vertexwise analysis

Baptiste Couvy-Duchesne , Futao Zhang , Kathryn Kemper , Julia Sidorenko , Naomi Wray
Journal of Medical Imaging, 2022, 9 (05), ⟨10.1117/1.JMI.9.5.052404⟩
Journal articles hal-03675041v1

The impact of aging on human brain network target controllability

Giulia Bassignana , Giordano Lacidogna , Paolo Bartolomeo , Olivier Colliot , Fabrizio de Vico Fallani
Brain Structure and Function, 2022, ⟨10.1007/s00429-022-02584-w⟩
Journal articles hal-03830858v1
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Online hard example mining vs. fixed oversampling strategy for segmentation of new multiple sclerosis lesions from longitudinal FLAIR MRI

Marius Schmidt- Mengin , Théodore Soulier , Mariem Hamzaoui , Arya Yazdan-Panah , Benedetta Bodini
Frontiers in Neuroscience, 2022, 16, pp.100405. ⟨10.3389/fnins.2022.1004050⟩
Journal articles hal-03836922v1
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Disease progression score estimation from multimodal imaging and microRNA data using supervised variational autoencoders

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Daisy Rinaldi , Agnes Camuzat
IEEE Journal of Biomedical and Health Informatics, 2022, 26 (12), pp.1-12. ⟨10.1109/JBHI.2022.3208517⟩
Journal articles hal-03789357v1
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Multilevel Survival Modeling with Structured Penalties for Disease Prediction from Imaging Genetics data

Pascal Lu , Olivier Colliot
IEEE Journal of Biomedical and Health Informatics, 2022, 26 (2), pp.798-808. ⟨10.1109/JBHI.2021.3100918⟩
Journal articles hal-03311509v2
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Association of APOE-Independent Alzheimer Disease Polygenic Risk Score With Brain Amyloid Deposition in Asymptomatic Older Adults

Laura Xicota , Beata Gyorgy , Benjamin Grenier-Boley , Alexandre Lecoeur , Gaelle Fontaine
Neurology, In press, 99 (5), pp.10.1212/WNL.0000000000200544. ⟨10.1212/WNL.0000000000200544⟩
Journal articles hal-03676479v1
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MicroRNA signatures in genetic frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Morwena Latouche , Dario Saracino , Daisy Rinaldi , Agnès Camuzat
Annals of Clinical and Translational Neurology, 2022, pp.1-14. ⟨10.1002/acn3.51674⟩
Journal articles hal-03826747v1
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Radiological classification of dementia from anatomical MRI assisted by machine learning-derived maps

Pierre Chagué , Béatrice Marro , Sarah Fadili , Marion Houot , Alexandre Morin
Journal de Neuroradiologie / Journal of Neuroradiology, 2021, 48 (6), pp.412-418. ⟨10.1016/j.neurad.2020.04.004⟩
Journal articles hal-02641005v1
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Anomaly detection for the individual analysis of brain PET images

Ninon Burgos , Jorge M. Cardoso , Jorge Samper-González , Marie-Odile Habert , Stanley Durrleman​
Journal of Medical Imaging, 2021, 8 (02), pp.024003. ⟨10.1117/1.JMI.8.2.024003⟩
Journal articles hal-03193306v1
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Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimer's disease

Junhao Wen , Jorge Samper-González , Simona Bottani , Alexandre Routier , Ninon Burgos
Neuroinformatics, 2021, 19 (1), pp.57-78. ⟨10.1007/s12021-020-09469-5⟩
Journal articles hal-02566361v2
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Primary Progressive Aphasia Associated With GRN Mutations: New Insights Into the Non-amyloid Logopenic Variant

Dario Saracino , Sophie Ferrieux , Marie Nogues-Lassiaille , Marion Houot , Aurélie Funkiewiez
Neurology, 2021, 97 (1), pp.e88-e102. ⟨10.1212/wnl.0000000000012174⟩
Journal articles hal-03281660v1
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Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic, Quantitative and Critical Review

Manon Ansart , Stéphane Epelbaum , Giulia Bassignana , Alexandre Bône , Simona Bottani
Medical Image Analysis, 2021, 67, pp.101848. ⟨10.1016/⟩
Journal articles hal-02337815v2
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Clinica: an open source software platform for reproducible clinical neuroscience studies

Alexandre Routier , Ninon Burgos , Mauricio Diaz , Michael Bacci , Simona Bottani
Frontiers in Neuroinformatics, 2021, 15, pp.689675. ⟨10.3389/fninf.2021.689675⟩
Journal articles hal-02308126v4
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Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer’s disease

Vincent Henry , Ivan Moszer , Olivier Dameron , Laura Vila Xicota , Bruno Dubois
Database - The journal of Biological Databases and Curation, 2021, pp.1-33. ⟨10.1093/database/baab004⟩
Journal articles hal-03144306v1
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Gaussian Graphical Model exploration and selection in high dimension low sample size setting

Thomas Lartigue , Simona Bottani , Stephanie Baron , Olivier Colliot , Stanley Durrleman
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2021, 43 (9), pp.3196-3213. ⟨10.1109/TPAMI.2020.2980542⟩
Journal articles hal-02504034v1
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Exploratory analysis of the genetics of impulse control disorders in Parkinson's disease using genetic risk scores

Johann Faouzi , Baptiste Couvy-Duchesne , Samir Bekadar , Olivier Colliot , Jean-Christophe Corvol
Parkinsonism & Related Disorders, 2021, 86, pp.74 - 77. ⟨10.1016/j.parkreldis.2021.04.003⟩
Journal articles hal-03298502v2
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Step-wise target controllability identifies dysregulated pathways of macrophage networks in multiple sclerosis

Giulia Bassignana , Jennifer Fransson , Vincent Henry , Olivier Colliot , Violetta Zujovic
Network Neuroscience, 2021, 5 (2), pp.337-357. ⟨10.1162/netn_a_00180⟩
Journal articles hal-03022314v1
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Deep learning for brain disorders: from data processing to disease treatment

Ninon Burgos , Simona Bottani , Johann Faouzi , Elina Thibeau-Sutre , Olivier Colliot
Briefings in Bioinformatics, 2021, 22 (2), pp.1560-1576. ⟨10.1093/bib/bbaa310⟩
Journal articles hal-03070554v1
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Plasma NfL levels and longitudinal change rates in C9orf72 and GRN-associated diseases: from tailored references to clinical applications

Dario Saracino , Karim Dorgham , Agnès Camuzat , Daisy Rinaldi , Armelle Rametti-Lacroux
Journal of Neurology, Neurosurgery and Psychiatry, 2021, 92 (12), pp.1278-1288. ⟨10.1136/jnnp-2021-326914⟩
Journal articles hal-03337055v1
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A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI

Alexis Guyot , Ana B Graciano Fouquier , Emilie Gerardin , Marie Chupin , Joan Glaunès
IEEE Transactions on Biomedical Engineering, 2021, 68 (2), pp.393-403. ⟨10.1109/TBME.2020.2999941⟩
Journal articles hal-02359660v2
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AD Course Map charts Alzheimer’s disease progression

Igor Koval , Alexandre Bône , Maxime Louis , Thomas Lartigue , Simona Bottani
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-87434-1⟩
Journal articles hal-01964821v3
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Cognitive inhibition impairments in presymptomatic C9orf72 carriers

Maxime Montembeault , Sabrina Sayah , Daisy Rinaldi , Benjamin Le Toullec , Anne Bertrand
Journal of Neurology, Neurosurgery and Psychiatry, 2020, ⟨10.1136/jnnp-2019-322242⟩
Journal articles hal-02484794v1
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Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation

Junhao Wen , Elina Thibeau-Sutre , Mauricio Diaz-Melo , Jorge Samper-González , Alexandre Routier
Medical Image Analysis, 2020, 63, pp.101694. ⟨10.1016/⟩
Journal articles hal-02562504v2
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Learning the spatiotemporal variability in longitudinal shape data sets

Alexandre Bône , Olivier Colliot , Stanley Durrleman
International Journal of Computer Vision, 2020, 128, pp.2873-2896. ⟨10.1007/s11263-020-01343-w⟩
Journal articles hal-02091549v5
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Plasma microRNA signature in presymptomatic and symptomatic subjects with C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Vincent Anquetil , Dario Saracino , Daisy Rinaldi , Agnès Camuzat
Journal of Neurology, Neurosurgery and Psychiatry, 2020, 92 (5), pp.485-493. ⟨10.1136/jnnp-2020-324647⟩
Journal articles hal-03046771v1
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Machine learning for classification and prediction of brain diseases: recent advances and upcoming challenges

Ninon Burgos , Olivier Colliot
Current Opinion in Neurology, 2020, 33 (4), pp.439-450. ⟨10.1097/WCO.0000000000000838⟩
Journal articles hal-02902586v1
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Comparison and validation of seven white matter hyperintensities segmentation software in elderly patients

Quentin Vanderbecq , Eric Xu , Sebastian Stroër , Baptiste Couvy-Duchesne , Mauricio Diaz-Melo
Neuroimage-Clinical, 2020, 27, pp.102357. ⟨10.1016/j.nicl.2020.102357⟩
Journal articles hal-02926474v1
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Genome wide association study of incomplete hippocampal inversion in adolescents

Claire Cury , Marzia Antonella Scelsi , Roberto Toro , Vincent Frouin , Eric Artiges
PLoS ONE, 2020, 15 (1), ⟨10.1371/journal.pone.0227355⟩
Journal articles hal-02416654v2
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Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort

Alexandre Morin , Jorge Samper-González , Anne Bertrand , Sebastian Ströer , Didier Dormont
Journal of Alzheimer's Disease, 2020, pp.1-10. ⟨10.3233/JAD-190594⟩
Journal articles hal-02511532v1
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Predicting PET-derived Myelin Content from Multisequence MRI for Individual Longitudinal Analysis in Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Matteo Tonietto , Stanley Durrleman
NeuroImage, 2020, 223C (117308), ⟨10.1016/j.neuroimage.2020.117308⟩
Journal articles hal-02922534v1
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A unified framework for association and prediction from vertex-wise grey-matter structure

Baptiste Couvy‐duchesne , Lachlan T Strike , Futao Zhang , Yan Holtz , Zhili Zheng
Human Brain Mapping, 2020, ⟨10.1002/hbm.25109⟩
Journal articles hal-02904458v1
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Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge

Baptiste Couvy-Duchesne , Johann Faouzi , Benoît Martin , Elina Thibeau-Sutre , Adam Wild
Frontiers in Psychiatry, 2020, 11, ⟨10.3389/fpsyt.2020.593336⟩
Journal articles hal-03136463v1
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The White Matter Module-Hub Network of Semantics Revealed by Semantic Dementia

Martina Sundqvist , Alexandre Routier , Bruno Dubois , Olivier Colliot , Marc Teichmann
Journal of Cognitive Neuroscience, 2020, pp.1-18. ⟨10.1162/jocn_a_01549⟩
Journal articles hal-02554966v1
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Automated Categorization of Parkinsonian Syndromes Using Magnetic Resonance Imaging in a Clinical Setting

Lydia Chougar , Johann Faouzi , Nadya Pyatigorskaya , Lydia Yahia‐cherif , Rahul Gaurav
Movement Disorders, 2020, ⟨10.1002/mds.28348⟩
Journal articles hal-03046578v2
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Tribute to Anne Bertrand (1978–2018): Neuroradiologist, scientist, teacher and friend

Didier Dormont , Noam Ben-Eliezer , Ninon Burgos , Olivier Colliot , Fabrizio de Vico Fallani
Journal de Neuroradiologie / Journal of Neuroradiology, 2019, 46 (2), pp.155-159. ⟨10.1016/j.neurad.2019.01.001⟩
Journal articles hal-02265305v1
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Disrupted core-periphery structure of multimodal brain networks in Alzheimer’s disease

Jérémy Guillon , Mario Chavez , Federico Battiston , Yohan Attal , Valentina La Corte
Network Neuroscience, 2019, 3 (2), pp.635-652. ⟨10.1162/netn_a_00087⟩
Journal articles hal-02265308v1
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Neurite density is reduced in the presymptomatic phase of C9orf72 disease

Junhao Wen , Hui Zhang , Daniel C Alexander , Stanley Durrleman , Alexandre Routier
Journal of Neurology, Neurosurgery and Psychiatry, 2019, J Neurol Neurosurg Psychiatry, 90 (4), pp.387-94. ⟨10.1136/jnnp-2018-318994⟩
Journal articles hal-01907482v1
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Fluid-attenuated inversion recovery MRI synthesis from multisequence MRI using three-dimensional fully convolutional networks for multiple sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Olivier Colliot
Journal of Medical Imaging, 2019, 6 (01), ⟨10.1117/1.JMI.6.1.014005⟩
Journal articles hal-02042526v2
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Reduction of recruitment costs in preclinical AD trials. Validation of automatic pre-screening algorithm for brain amyloidosis

Manon Ansart , Stéphane Epelbaum , Geoffroy Gagliardi , Olivier Colliot , Didier Dormont
Statistical Methods in Medical Research, 2019, pp.096228021882303. ⟨10.1177/0962280218823036⟩
Journal articles hal-01964942v2
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Sulcal morphology in Alzheimer's disease: an effective marker of diagnosis and cognition

Maxime Bertoux , Julien Lagarde , Fabian Corlier , Lorraine Hamelin , Jean-François Mangin
Neurobiology of Aging, 2019, Epub ahead of print. ⟨10.1016/j.neurobiolaging.2019.07.015⟩
Journal articles inserm-02266990v1
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Interpretable and reliable artificial intelligence systems for brain diseases

Olivier Colliot
ERCIM News, 2019, 118
Journal articles hal-02178901v1
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Predicting PET-derived Demyelination from Multimodal MRI using Sketcher-Refiner Adversarial Training for Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Nicholas Ayache
Medical Image Analysis, 2019, 58 (101546), ⟨10.1016/⟩
Journal articles hal-02276634v1
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Differential default mode network trajectories in asymptomatic individuals at risk for Alzheimer's disease

Michel Thiebaut de Schotten , Hovagim Bakardjian , Habib Benali , Hugo Bertin , Joel Bonheur
Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 2019, 15 (7), pp.940-950. ⟨10.1016/j.jalz.2019.03.006⟩
Journal articles hal-02368904v1
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Presymptomatic spinal cord pathology in c9orf72 mutation carriers: a longitudinal neuroimaging study

Giorgia Querin , Peter Bede , Mohamed Mounir El Mendili , Menghan Li , Mélanie Pélégrini-Issac
Annals of Neurology, 2019, 86 (2), pp.158-167. ⟨10.1002/ana.25520⟩
Journal articles hal-02265301v1
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Relations between C9orf72 expansion size in blood, age at onset, age at collection and transmission across generations in patients and presymptomatic carriers

Clémence Fournier , Mathieu Barbier , Agnès Camuzat , Vincent Anquetil , Serena Lattante
Neurobiology of Aging, 2019, 74, pp.234.e1-234.e8. ⟨10.1016/j.neurobiolaging.2018.09.010⟩
Journal articles hal-02025976v1
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Spatiotemporal Propagation of the Cortical Atrophy: Population and Individual Patterns

Igor Koval , Jean-Baptiste Schiratti , Alexandre M Routier , Michael Bacci , Olivier Colliot
Frontiers in Neurology, 2018, 9, pp.235. ⟨10.3389/fneur.2018.00235⟩
Journal articles hal-01910400v1
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An Automated Pipeline for the Analysis of PET Data on the Cortical Surface

Arnaud Marcoux , Ninon Burgos , Anne Bertrand , Marc Teichmann , Alexandre Routier
Frontiers in Neuroinformatics, 2018, 12, ⟨10.3389/fninf.2018.00094⟩
Journal articles hal-01950933v1
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Cognitive and neuroimaging features and brain β-amyloidosis in individuals at risk of Alzheimer's disease (INSIGHT-preAD): a longitudinal observational study

Bruno Dubois , Stéphane Epelbaum , Francis Nyasse , Hovagim Bakardjian , Geoffroy Gagliardi
The Lancet Neurology, 2018, 17 (4), pp.335 - 346. ⟨10.1016/S1474-4422(18)30029-2⟩
Journal articles hal-01777834v1
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Early cognitive, structural and microstructural changes in c9orf72 presymptomatic carriers before 40 years of age

Anne Bertrand , Junhao Wen , Daisy Rinaldi , Marion Houot , Sabrina Sayah
JAMA neurology, 2018, 75 (2), pp.236-245. ⟨10.1001/jamaneurol.2017.4266⟩
Journal articles hal-01654000v1
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Structural, Microstructural, and Metabolic Alterations in Primary Progressive Aphasia Variants

Alexandre Routier , Marie-Odile Habert , Anne Bertrand , Aurélie Kas , Martina Sundqvist
Frontiers in Neurology, 2018, 9, ⟨10.3389/fneur.2018.00766⟩
Journal articles hal-01897015v1
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The structure of the mental lexicon: what primary progressive aphasias reveal

Clara Sanches , Alexandre Routier , Olivier Colliot , Marc Teichmann
Neuropsychologia, 2018, 109, pp.107-115. ⟨10.1016/j.neuropsychologia.2017.12.018⟩
Journal articles hal-01672932v1

Cerebral microbleeds and CSF Alzheimer biomarkers in primary progressive aphasias

Aline Mendes , Anne Bertrand , Foudil Lamari , Olivier Colliot , Alexandre Routier
Neurology, 2018, 90 (12), pp.e1057 - e1065. ⟨10.1212/WNL.0000000000005165⟩
Journal articles hal-01820415v1
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Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids

Claire Cury , Joan Glaunès , Roberto Toro , Marie Chupin , Gunter Schumann
Frontiers in Neuroscience, 2018, 12, pp.803. ⟨10.3389/fnins.2018.00803⟩
Journal articles hal-01920263v2
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Revolution of Alzheimer Precision Neurology. Passageway of Systems Biology and Neurophysiology

Harald Hampel , Nicola Toschi , Claudio Babiloni , Filippo Baldacci , Keith L Black
Journal of Alzheimer's Disease, 2018, 64 (s1), pp.S47 - S105. ⟨10.3233/jad-179932⟩
Journal articles hal-01910402v1
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Double diffeomorphism: combining morphometry and structural connectivity analysis

Pietro Gori , Olivier Colliot , Linda Marrakchi Kacem , Yulia Worbe , Alexandre Routier
IEEE Transactions on Medical Imaging, 2018, 37 (9), pp.2033-2043. ⟨10.1109/TMI.2018.2813062⟩
Journal articles hal-01709847v2
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Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data

Jorge Samper-González , Ninon Burgos , Simona Bottani , Sabrina Fontanella , Pascal Lu
NeuroImage, 2018, 183, pp.504-521. ⟨10.1016/j.neuroimage.2018.08.042⟩
Journal articles hal-01858384v1
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Multi-modal brain fingerprinting: a manifold approximation based framework

Kuldeep Kumar , Laurent Chauvin , Matthew Toews , Olivier Colliot , Christian Desrosiers
NeuroImage, 2018, 183, pp.212 - 226. ⟨10.1016/j.neuroimage.2018.08.006⟩
Journal articles hal-01910367v1
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Fiberprint: A subject fingerprint based on sparse code pooling for white matter fiber analysis

Kuldeep Kumar , Christian Desrosiers , Kaleem Siddiqi , Olivier Colliot , Matthew Toews
NeuroImage, 2017, 158, pp.242 - 259. ⟨10.1016/j.neuroimage.2017.06.083⟩
Journal articles hal-01562449v1
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Amyloidosis and neurodegeneration result in distinct structural connectivity patterns in mild cognitive impairment

Thomas Jacquemont , Fabrizio de Vico Fallani , Anne Bertrand , Stéphane Epelbaum , Alexandre Routier
Neurobiology of Aging, 2017, ⟨10.1016/j.neurobiolaging.2017.03.023⟩
Journal articles hal-01518785v1

Cortical amyloid accumulation is associated with alterations of structural integrity in older people with subjective memory complaints

Stefan Teipel , Enrica Cavedo , Sarah Weschke , Michel Grothe , Katrine Rojkova
Neurobiology of Aging, 2017, 57, pp.143-152. ⟨10.1016/j.neurobiolaging.2017.05.016⟩
Journal articles hal-03769687v1
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A Bayesian mixed-effects model to learn trajectories of changes from repeated manifold-valued observations

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Olivier Colliot , Stanley Durrleman
Journal of Machine Learning Research, 2017, 18, pp.1-33
Journal articles hal-01540367v3
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Early life adversity is associated with a smaller hippocampus in male but not female depressed in-patients: a case–control study

Romain Colle , Tomoyuki Segawa , Marie Chupin , Minh Ngoc Thien Kim Tran Dong , Patrick Hardy
BMC Psychiatry, 2017, 17 (1), pp.71. ⟨10.1186/s12888-017-1233-2⟩
Journal articles hal-01474139v1
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Loss of brain inter-frequency hubs in Alzheimer's disease.

Jérémy Guillon , Yohan Attal , Valentina La Corte , Olivier Colliot , Bruno Dubois
Scientific Reports, 2017, 7 (1), pp.10879. ⟨10.1038/s41598-017-07846-w⟩
Journal articles hal-01578419v1
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Reduced basal forebrain atrophy progression in a randomized Donepezil trial in prodromal Alzheimer's disease

Enrica Cavedo , Michel J Grothe , Olivier Colliot , Simone Lista , Marie Chupin
Scientific Reports, 2017, 7 (1), pp.11706. ⟨10.1038/s41598-017-09780-3⟩
Journal articles hal-01589622v1
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A Bayesian Framework for Joint Morphometry of Surface and Curve meshes in Multi-Object Complexes

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Cyril Poupon
Medical Image Analysis, 2017, 35, pp.458-474. ⟨10.1016/⟩
Journal articles hal-01359423v1
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Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease

Claire Cury , Joan Glaunès , Marie Chupin , Olivier Colliot
Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2017, 5 (5), pp.350 - 358. ⟨10.1080/21681163.2015.1035403⟩
Journal articles hal-01135304v1

Early and protective microglial activation in Alzheimer's disease: a prospective study using 18F-DPA-714 PET imaging

Lorraine Hamelin , Julien Lagarde , Guillaume Dorothée , Claire Leroy , Mickael Labit
Brain - A Journal of Neurology , 2016, 139 (Pt 4), pp.1252-64. ⟨10.1093/brain/aww017⟩
Journal articles hal-01372414v1

Smaller hippocampal volumes predict lower antidepressant response/remission rates in depressed patients: A meta-analysis

Romain Colle , Irène Dupong , Olivier Colliot , Eric Deflesselle , Patrick Hardy
World Journal of Biological Psychiatry, 2016, pp.1-23. ⟨10.1080/15622975.2016.1208840⟩
Journal articles hal-01372398v1
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Robust imaging of hippocampal inner structure at 7T: in vivo acquisition protocol and methodological choices

Linda Marrakchi-Kacem , Alexandre Vignaud , Julien Sein , Johanne Germain , Thomas R Henry
Magnetic Resonance Materials in Physics, Biology and Medicine, 2016
Journal articles hal-01321870v2
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Reduced Regional Cortical Thickness Rate of Change in Donepezil-Treated Subjects With Suspected Prodromal Alzheimer’s Disease

Enrica Cavedo , Bruno Dubois , Olivier Colliot , Simone Lista , Bernard Croisile
Journal of Clinical Psychiatry, 2016, ⟨10.4088/JCP.15m10413⟩
Journal articles hal-01388951v1

Predictors of cognitive decline and treatment response in a clinical trial on suspected prodromal Alzheimer's disease

Stefan J Teipel , Enrica Cavedo , Michel J Grothe , Simone Lista , Samantha Galluzzi
Neuropharmacology, 2016, 108, pp.128-35. ⟨10.1016/j.neuropharm.2016.02.005⟩
Journal articles hal-01372417v1
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Hippocampal volume predicts antidepressant efficacy in depressed patients without incomplete hippocampal inversion

Romain Colle , Claire Cury , Marie Chupin , Eric Deflesselle , Patrick Hardy
Neuroimage-Clinical, 2016, ⟨10.1016/j.nicl.2016.04.009⟩
Journal articles hal-01310464v1
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Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Fabrizio de Vico Fallani
IEEE Transactions on Medical Imaging, 2016, PP (99), ⟨10.1109/TMI.2016.2591080⟩
Journal articles hal-01346067v1
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CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts

Grégory Operto , Marie Chupin , Bénédicte Batrancourt , Marie-Odile Habert , Olivier Colliot
Neuroinformatics, 2016, pp.1-12. ⟨10.1007/s12021-016-9295-8⟩
Journal articles hal-01303094v1
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White matter lesions in FTLD: distinct phenotypes characterize GRN and C9ORF72 mutations

Fatima Ameur , Olivier Colliot , Paola Caroppo , Sebastian Stroer , Didier Dormont
Neurology Genetics, 2016, 2 (1), ⟨10.1212/NXG.0000000000000047⟩
Journal articles hal-01266596v1
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Incomplete Hippocampal Inversion: A Comprehensive MRI Study of Over 2000 Subjects

Claire Cury , Roberto Toro , Fanny Cohen , Clara Fischer , Amel Mhaya
Frontiers in Neuroanatomy, 2015, 9, pp.160. ⟨10.3389/fnana.2015.00160⟩
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Donepezil decreases annual rate of hippocampal atrophy in suspected prodromal Alzheimer's disease

Bruno Dubois , Marie Chupin , Harald Hampel , Simone Lista , Enrica Cavedo
Alzheimer's & Dementia : the Journal of the Alzheimer's Association, 2015, 11 (9), pp.1041-1049. ⟨10.1016/j.jalz.2014.10.003⟩
Journal articles hal-01249861v1

Depressed suicide attempters have smaller hippocampus than depressed patients without suicide attempts

Romain Colle , Marie Chupin , Claire Cury , Christophe Vandendrie , Florence Gressier
Journal of Psychiatric Research, 2015, 61, pp.6. ⟨10.1016/j.jpsychires.2014.12.010⟩
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Sulcal morphology as a new imaging marker for the diagnosis of early onset Alzheimer's disease

Lorraine Hamelin , Maxime Bertoux , Michel Bottlaender , Helene Corne , Julien Lagarde
Neurobiology of Aging, 2015, 36 (11), pp.2932-9. ⟨10.1016/j.neurobiolaging.2015.04.019⟩
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Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease?

Paola Caroppo , Marie-Odile Habert , Stanley Durrleman , Aurélie Funkiewiez , Vincent Perlbarg
Journal of Alzheimer's Disease, 2015, 47 (3), pp.751-9. ⟨10.3233/JAD-150270⟩
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Extensive white matter involvement in patients with frontotemporal lobar degeneration: think progranulin

Paola Caroppo , Isabelle Le Ber , Agnès Camuzat , Fabienne Clot , Lionel Naccache
JAMA neurology, 2014, 71 (12), pp.1562-6
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Structural connectivity differences in left and right temporal lobe epilepsy

Pierre Besson , Vera Dinkelacker , Romain Valabregue , Lionel Thivard , Xavier Leclerc
NeuroImage, 2014, pp.135-44
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Perspective on future role of biological markers in clinical therapy trials of Alzheimer's disease: a long-range point of view beyond 2020

Harald Hampel , Simone Lista , Stefan J Teipel , Francesco Garaci , Robert Nisticò
Biochemical Pharmacology, 2014, pp.426-49
Journal articles hal-01098832v1
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Detection of volume loss in hippocampal layers in Alzheimer's disease using 7 T MRI: a feasibility study

Claire Boutet , Marie Chupin , Stéphane Lehéricy , Linda Marrakchi-Kacem , Stéphane Epelbaum
Neuroimage-Clinical, 2014, 5, pp.341-8
Journal articles hal-01099185v1
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The road ahead to cure Alzheimer’s disease: development of biological markers and neuroimaging methods for prevention trials across all stages and target populations

Enrica Cavedo , Simone Lista , Zaven S Khachaturian , Paul S Aisen , Philippe Amouyel
The Journal of prevention of Alzheimer's disease, 2014, 1 (3), pp.181-202. ⟨10.14283/jpad.2014.32⟩
Journal articles hal-01098836v1
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Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data

Rémi Cuingnet , Joan Alexis Glaunès , Marie Chupin , Habib Benali , Olivier Colliot
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2013, 35 (3), pp.682 - 696. ⟨10.1109/TPAMI.2012.142⟩
Journal articles hal-00790079v1
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Magnetic resonance imaging for diagnosis of early Alzheimer's disease

Olivier Colliot , Lorraine Hamelin , Marie Sarazin
Revue Neurologique, 2013, 169 (10), pp.724-8. ⟨10.1016/j.neurol.2013.07.013⟩
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The clinical and anatomical heterogeneity of environmental dependency phenomena

Julien Lagarde , Romain Valabrègue , Jean-Christophe Corvol , Isabelle Le Ber , Olivier Colliot
Journal of Neurology, 2013, 260 (9), pp.2262-70. ⟨10.1007/s00415-013-6976-1⟩
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Is Hippocampal Volume a Good Marker to Differentiate Alzheimer's Disease from Frontotemporal Dementia?

Leonardo Cruz de Souza , Marie Chupin , Maxime Bertoux , Stéphane Lehéricy , Bruno Dubois
Journal of Alzheimer's Disease, 2013, 36 (1), pp.57-66. ⟨10.3233/JAD-122293⟩
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CSF tau markers are correlated with hippocampal volume in Alzheimer's disease

Leonardo C de Souza , Marie Chupin , Foudil Lamari , Claude Jardel , Delphine Leclercq
Neurobiology of Aging, 2012, 33 (7), pp.1253-7. ⟨10.1016/j.neurobiolaging.2011.02.022⟩
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Distinct patterns of antiamyloid-β antibodies in typical and atypical Alzheimer disease

Guillaume Dorothée , Michel Bottlaender , Edmond Moukari , Leonardo de Souza , Renaud Maroy
Archives of Neurology -Chigago-, 2012, 69 (9), pp.1181-1185. ⟨10.1001/archneurol.2012.604⟩
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Is radiological evaluation as good as computer-based volumetry to assess hippocampal atrophy in Alzheimer's disease?

Claire Boutet , Marie Chupin , Olivier Colliot , Marie Sarazin , Gurkan Mutlu
Neuroradiology, 2012, 54 (12), pp.1321-1330. ⟨10.1007/s00234-012-1058-0⟩
Journal articles hal-00790081v1
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Contrast-based fully automatic segmentation of white matter hyperintensities: method and validation

Thomas Samaille , Ludovic Fillon , Rémi Cuingnet , Eric Jouvent , Hugues Chabriat
PLoS ONE, 2012, 7 (11), pp.e48953. ⟨10.1371/journal.pone.0048953⟩
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Automatic hippocampal segmentation in temporal lobe epilepsy: impact of developmental abnormalities

Hosung Kim , Marie Chupin , Olivier Colliot , Boris C Bernhardt , Neda Bernasconi
NeuroImage, 2012, 59 (4), pp.3178-3186. ⟨10.1016/j.neuroimage.2011.11.040⟩
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Segmentation ciblée d’images IRM et maladie d’Alzheimer

Marie Chupin , Emilie Gérardin , Rémi Cuingnet , Eric Bardinet , Didier Dormont
Innovation and Research in BioMedical engineering, 2011
Journal articles hal-01413898v1

Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome

Rémi Cuingnet , Charlotte Rosso , Marie Chupin , Stéphane Lehéricy , Didier Dormont
Medical Image Analysis, 2011, 15 (5), pp.729-37. ⟨10.1016/⟩
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Early ADC changes in motor structures predict outcome of acute stroke better than lesion volume

Charlotte Rosso , Olivier Colliot , Christian Pires , Christine Delmaire , Romain Valabrègue
Journal de Neuroradiologie / Journal of Neuroradiology, 2011, 38 (2), pp.105-12. ⟨10.1016/j.neurad.2010.05.001⟩
Journal articles hal-00805381v1
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Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database

Rémi Cuingnet , Emilie Gerardin , Jérôme Tessieras , Guillaume Auzias , Stéphane Lehéricy
NeuroImage, 2011, 56 (2), pp.766-81. ⟨10.1016/j.neuroimage.2010.06.013⟩
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Diffeomorphic brain registration under exhaustive sulcal constraints.

Guillaume Auzias , Olivier Colliot , Joan Alexis Glaunès , Matthieu Perrot , Jean-François Mangin
IEEE Transactions on Medical Imaging, 2011, 30 (6), pp.1214-1227. ⟨10.1109/TMI.2011.2108665⟩
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Line Garnero (1955-2009): pluridisciplinarity at the heart. Tribute to Line Garnero, director of research at CNRS.

Sylvain Baillet , Jean Brunol , Pierre Chavel , Olivier Colliot , Mireille Cuniot-Ponsard
Innovation and Research in BioMedical engineering, 2011, 32 (1), pp.1-7
Journal articles hal-00671399v1

Similar amyloid-β burden in posterior cortical atrophy and Alzheimer's disease

Leonardo Cruz de Souza , Fabian Corlier , Marie-Odile Habert , Olga Uspenskaya , Renaud Maroy
Brain - A Journal of Neurology , 2011, 134 (Pt 7), pp.2036-43. ⟨10.1093/brain/awr130⟩
Journal articles hal-00795743v1

Tissue at risk in the deep middle cerebral artery territory is critical to stroke outcome.

Charlotte Rosso , Olivier Colliot , Romain Valabrègue , Sophie Crozier , Didier Dormont
Neuroradiology, 2011, 53 (10), pp.763-71. ⟨10.1007/s00234-011-0916-5⟩
Journal articles hal-00795756v1