Olivier Colliot

Olivier Colliot - Research Director at CNRS - ARAMIS Lab at the Paris Brain Institute (CNRS/Inria/Inserm/Sorbonne Universite)
291
Documents

Présentation

Research Director at CNRS

Head of the ARAMIS Lab, a joint team between CNRS, Inria, Inserm and University Pierre and Marie Curie at the Paris Brain Institute (ICM), in co-direction with Stanley Durrleman.

Homepage: https://www.aramislab.fr/perso/colliot/

Email: olivier.colliot@cnrs.fr

Domaines de recherche

Intelligence artificielle [cs.AI] Imagerie médicale Apprentissage [cs.LG] Traitement des images [eess.IV]

Publications

72
65
57
54
43
41
37
28
23
22
18
17
16
16
16
15
15
15
15
15
15
14
14
14
13
13
13
13
12
12
12
11
11
11
11
11
11
11
11
10
10
10
10
10
10
9
9
9
9
9
9
9
9
9
8
8
8
8
8
7
7
7
7
7
7
7
7
7
7
7
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
5
5
5
5
5
5
5
5
2
20
25
18
21
22
27
28
23
11
17
15
7
8
11
5
7
5
1
6
4
3
3
2
12
9
6
5
5
4
4
4
4
3
3
3
3
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
166
58
48
41
32
29
16
16
10
7
6
6
6
6
5
4
2
2
2
1
1
1
1
1
1

Publications

Image document

Confidence intervals for performance estimates in brain MRI segmentation

Rosana El Jurdi , Gaël Varoquaux , Olivier Colliot
Medical Image Analysis, In press
Article dans une revue hal-04166803 v2
Image document

Projected pooling loss for red nucleus segmentation with soft topology constraints

Guanghui Fu , Rosana El Jurdi , Lydia Chougar , Didier Dormont , Romain Valabregue et al.
Journal of Medical Imaging, 2024, 11 (04), ⟨10.1117/1.JMI.11.4.044002⟩
Article dans une revue hal-04643094 v1
Image document

Contribution of MRI for the Early Diagnosis of Parkinsonism in Patients with Diagnostic Uncertainty

Lydia Chougar , Alice Faucher , Johann Faouzi , François‐xavier Lejeune , Gonçalo Gama Lobo et al.
Movement Disorders, 2024, 39 (5), pp.825-835. ⟨10.1002/mds.29760⟩
Article dans une revue hal-04675671 v1
Image document

Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts

Lisa Hemforth , Baptiste Couvy-Duchesne , Kevin de Matos , Camille Brianceau , Matthieu Joulot et al.
Journal of Machine Learning for Biomedical Imaging, 2024, 2, pp.1-26. ⟨10.59275/j.melba.2024-3d4e⟩
Article dans une revue hal-04635141 v2
Image document

Automatic motion artefact detection in brain T1-weighted magnetic resonance images from a clinical data warehouse using synthetic data

Sophie Loizillon , Simona Bottani , Aurélien Maire , Sebastian Ströer , Didier Dormont et al.
Medical Image Analysis, 2024, 93, pp.103073. ⟨10.1016/j.media.2023.103073⟩
Article dans une revue hal-03910451 v2
Image document

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont et al.
BMC Medical Imaging, 2024, 24 (1), pp.67. ⟨10.1186/s12880-024-01242-3⟩
Article dans une revue hal-03497645 v2
Image document

Proxy-analysis of the genetics of cognitive decline in Parkinson’s disease through polygenic scores

Johann Faouzi , Manuela Tan , Fanny Casse , Suzanne Lesage , Christelle Tesson et al.
npj Parkinson's Disease, 2024, 10 (1), pp.8. ⟨10.1038/s41531-023-00619-5⟩
Article dans une revue hal-04672469 v1
Image document

Grey-matter structure markers of Alzheimer's disease, Alzheimer's conversion, functioning and cognition: a metaanalysis across 11 cohorts

Baptiste Couvy-Duchesne , Vincent Frouin , Vincent Bouteloup , Nikitas Koussis , Julia Sidorenko et al.
Human Brain Mapping, In press, ⟨10.1002/hbm.70089⟩
Article dans une revue hal-04815478 v1
Image document

Evaluation of pseudo-healthy image reconstruction for anomaly detection with deep generative models: Application to brain FDG PET

Ravi Hassanaly , Camille Brianceau , Maëlys Solal , Olivier Colliot , Ninon Burgos
Journal of Machine Learning for Biomedical Imaging, 2024, Special Issue for Generative Models, 2, pp.611. ⟨10.59275/j.melba.2024-b87a⟩
Article dans une revue hal-04315738 v2
Image document

Automated MRI Quality Assessment of Brain T1-weighted MRI in Clinical Data Warehouses: A Transfer Learning Approach Relying on Artefact Simulation

Sophie Loizillon , Simona Bottani , Stéphane Mabille , Yannick Jacob , Aurélien Maire et al.
Journal of Machine Learning for Biomedical Imaging, 2024, 2 (June 2024), pp.888-915. ⟨10.59275/j.melba.2024-7fgd⟩
Article dans une revue hal-04623223 v1
Image document

Automatic segmentation of the choroid plexuses: Method and validation in controls and patients with multiple sclerosis

Arya Yazdan-Panah , Marius Schmidt-Mengin , Vito A.G. Ricigliano , Théodore Soulier , Bruno Stankoff et al.
Neuroimage-Clinical, 2023, 38, pp.103368. ⟨10.1016/j.nicl.2023.103368⟩
Article dans une revue hal-04026889 v1
Image document

Comparison of mean diffusivity, R2* relaxation rate and morphometric biomarkers for the clinical differentiation of parkinsonism

Lydia Chougar , François-Xavier Lejeune , Johann Faouzi , Benjamin Morino , Alice Faucher et al.
Parkinsonism & Related Disorders, 2023, 108, pp.105287. ⟨10.1016/j.parkreldis.2023.105287⟩
Article dans une revue hal-04041736 v2
Image document

Temporo-basal sulcal connections: a manual annotation protocol and an investigation of sexual dimorphism and heritability

Kevin de Matos , Claire Cury , Lydia Chougar , Lachlan T Strike , Thibault Rolland et al.
Brain Structure and Function, 2023, 228 (6), pp.1459-1478. ⟨10.1007/s00429-023-02663-6⟩
Article dans une revue hal-04132176 v1
Image document

Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Dario Saracino , Sebastian Stroër et al.
Medical Image Analysis, 2023, 89, pp.102903. ⟨10.1016/j.media.2023.102903⟩
Article dans une revue hal-03656136 v2
Image document

Genomic loci influence patterns of structural covariance in the human brain

Junhao Wen , Ilya M Nasrallah , Ahmed Abdulkadir , Theodore D Satterthwaite , Zhijian Yang et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (52), ⟨10.1073/pnas.2300842120⟩
Article dans une revue hal-04362321 v1
Image document

How will tomorrow’s algorithms fuse multimodal data? The example of the neuroprognosis in Intensive Care

Théodore Soulier , Olivier Colliot , Nicholas Ayache , Benjamin Rohaut
Anaesthesia Critical Care & Pain Medicine, In press, pp.101301. ⟨10.1016/j.accpm.2023.101301⟩
Article dans une revue hal-04227434 v1
Image document

ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont et al.
Computer Methods and Programs in Biomedicine, 2022, 220, pp.106818. ⟨10.1016/j.cmpb.2022.106818⟩
Article dans une revue hal-03351976 v2
Image document

Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Adam Wild , Sébastian Ströer et al.
Medical Image Analysis, 2022, 75, ⟨10.1016/j.media.2021.102219⟩
Article dans une revue hal-03154792 v4
Image document

The impact of aging on human brain network target controllability

Giulia Bassignana , Giordano Lacidogna , Paolo Bartolomeo , Olivier Colliot , Fabrizio de Vico Fallani
Brain Structure and Function, 2022, 227 (9), pp.3001-3015. ⟨10.1007/s00429-022-02584-w⟩
Article dans une revue hal-03830858 v1
Image document

Disease progression score estimation from multimodal imaging and microRNA data using supervised variational autoencoders

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Daisy Rinaldi , Agnes Camuzat et al.
IEEE Journal of Biomedical and Health Informatics, 2022, 26 (12), pp.1-12. ⟨10.1109/JBHI.2022.3208517⟩
Article dans une revue hal-03789357 v1
Image document

Multilevel Survival Modeling with Structured Penalties for Disease Prediction from Imaging Genetics data

Pascal Lu , Olivier Colliot
IEEE Journal of Biomedical and Health Informatics, 2022, 26 (2), pp.798-808. ⟨10.1109/JBHI.2021.3100918⟩
Article dans une revue hal-03311509 v2
Image document

Parsimonious model for mass-univariate vertexwise analysis

Baptiste Couvy-Duchesne , Futao Zhang , Kathryn Kemper , Julia Sidorenko , Naomi Wray et al.
Journal of Medical Imaging, 2022, 9 (05), ⟨10.1117/1.JMI.9.5.052404⟩
Article dans une revue hal-03675041 v1
Image document

Machine learning-based prediction of impulse control disorders in Parkinson's disease from clinical and genetic data

Johann Faouzi , Samir Bekadar , Fanny Artaud , Alexis Elbaz , Graziella Mangone et al.
IEEE Open Journal of Engineering in Medicine and Biology, 2022, 3, pp.96 - 107. ⟨10.1109/OJEMB.2022.3178295⟩
Article dans une revue hal-03680714 v2
Image document

Online hard example mining vs. fixed oversampling strategy for segmentation of new multiple sclerosis lesions from longitudinal FLAIR MRI

Marius Schmidt- Mengin , Théodore Soulier , Mariem Hamzaoui , Arya Yazdan-Panah , Benedetta Bodini et al.
Frontiers in Neuroscience, 2022, 16, pp.100405. ⟨10.3389/fnins.2022.1004050⟩
Article dans une revue hal-03836922 v1
Image document

MicroRNA signatures in genetic frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Morwena Latouche , Dario Saracino , Daisy Rinaldi , Agnès Camuzat et al.
Annals of Clinical and Translational Neurology, 2022, pp.1-14. ⟨10.1002/acn3.51674⟩
Article dans une revue hal-03826747 v1
Image document

Association of APOE-Independent Alzheimer Disease Polygenic Risk Score With Brain Amyloid Deposition in Asymptomatic Older Adults

Laura Xicota , Beata Gyorgy , Benjamin Grenier-Boley , Alexandre Lecoeur , Gaelle Fontaine et al.
Neurology, 2022, 99 (5), pp.10.1212/WNL.0000000000200544. ⟨10.1212/WNL.0000000000200544⟩
Article dans une revue hal-03676479 v1
Image document

Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic, Quantitative and Critical Review

Manon Ansart , Stéphane Epelbaum , Giulia Bassignana , Alexandre Bône , Simona Bottani et al.
Medical Image Analysis, 2021, 67, pp.101848. ⟨10.1016/j.media.2020.101848⟩
Article dans une revue hal-02337815 v2
Image document

Clinica: an open source software platform for reproducible clinical neuroscience studies

Alexandre Routier , Ninon Burgos , Mauricio Diaz , Michael Bacci , Simona Bottani et al.
Frontiers in Neuroinformatics, 2021, 15, pp.689675. ⟨10.3389/fninf.2021.689675⟩
Article dans une revue hal-02308126 v4
Image document

Exploratory analysis of the genetics of impulse control disorders in Parkinson's disease using genetic risk scores

Johann Faouzi , Baptiste Couvy-Duchesne , Samir Bekadar , Olivier Colliot , Jean-Christophe Corvol
Parkinsonism & Related Disorders, 2021, 86, pp.74 - 77. ⟨10.1016/j.parkreldis.2021.04.003⟩
Article dans une revue hal-03298502 v2
Image document

Step-wise target controllability identifies dysregulated pathways of macrophage networks in multiple sclerosis

Giulia Bassignana , Jennifer Fransson , Vincent Henry , Olivier Colliot , Violetta Zujovic et al.
Network Neuroscience, 2021, 5 (2), pp.337-357. ⟨10.1162/netn_a_00180⟩
Article dans une revue hal-03022314 v1
Image document

Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimer's disease

Junhao Wen , Jorge Samper-González , Simona Bottani , Alexandre Routier , Ninon Burgos et al.
Neuroinformatics, 2021, 19 (1), pp.57-78. ⟨10.1007/s12021-020-09469-5⟩
Article dans une revue hal-02566361 v2
Image document

Anomaly detection for the individual analysis of brain PET images

Ninon Burgos , Jorge M. Cardoso , Jorge Samper-González , Marie-Odile Habert , Stanley Durrleman​ et al.
Journal of Medical Imaging, 2021, 8 (02), pp.024003. ⟨10.1117/1.JMI.8.2.024003⟩
Article dans une revue hal-03193306 v1
Image document

Radiological classification of dementia from anatomical MRI assisted by machine learning-derived maps

Pierre Chagué , Béatrice Marro , Sarah Fadili , Marion Houot , Alexandre Morin et al.
Journal de Neuroradiologie / Journal of Neuroradiology, 2021, 48 (6), pp.412-418. ⟨10.1016/j.neurad.2020.04.004⟩
Article dans une revue hal-02641005 v1
Image document

Primary Progressive Aphasia Associated With GRN Mutations: New Insights Into the Non-amyloid Logopenic Variant

Dario Saracino , Sophie Ferrieux , Marie Nogues-Lassiaille , Marion Houot , Aurélie Funkiewiez et al.
Neurology, 2021, 97 (1), pp.e88-e102. ⟨10.1212/wnl.0000000000012174⟩
Article dans une revue hal-03281660 v1
Image document

Gaussian Graphical Model exploration and selection in high dimension low sample size setting

Thomas Lartigue , Simona Bottani , Stephanie Baron , Olivier Colliot , Stanley Durrleman et al.
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2021, 43 (9), pp.3196-3213. ⟨10.1109/TPAMI.2020.2980542⟩
Article dans une revue hal-02504034 v1
Image document

Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer’s disease

Vincent Henry , Ivan Moszer , Olivier Dameron , Laura Vila Xicota , Bruno Dubois et al.
Database - The journal of Biological Databases and Curation, 2021, pp.1-33. ⟨10.1093/database/baab004⟩
Article dans une revue hal-03144306 v1
Image document

Differential early subcortical involvement in genetic FTD within the GENFI cohort

Martina Bocchetta , Emily G Todd , Georgia Peakman , David M Cash , Rhian S Convery et al.
Neuroimage-Clinical, 2021, 30, ⟨10.1016/j.nicl.2021.102646⟩
Article dans une revue hal-04539393 v1
Image document

Primary progressive aphasias associated with C9orf72 expansions: Another side of the story

Dario Saracino , Amandine Géraudie , Anne Remes , Sophie Ferrieux , Marie Noguès-Lassiaille et al.
Cortex, 2021, 145, pp.145-159. ⟨10.1016/j.cortex.2021.09.005⟩
Article dans une revue hal-03769616 v1
Image document

AD Course Map charts Alzheimer’s disease progression

Igor Koval , Alexandre Bône , Maxime Louis , Thomas Lartigue , Simona Bottani et al.
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-87434-1⟩
Article dans une revue hal-01964821 v3
Image document

A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI

Alexis Guyot , Ana B Graciano Fouquier , Emilie Gerardin , Marie Chupin , Joan Glaunès et al.
IEEE Transactions on Biomedical Engineering, 2021, 68 (2), pp.393-403. ⟨10.1109/TBME.2020.2999941⟩
Article dans une revue hal-02359660 v2
Image document

Deep learning for brain disorders: from data processing to disease treatment

Ninon Burgos , Simona Bottani , Johann Faouzi , Elina Thibeau-Sutre , Olivier Colliot
Briefings in Bioinformatics, 2021, 22 (2), pp.1560-1576. ⟨10.1093/bib/bbaa310⟩
Article dans une revue hal-03070554 v1
Image document

Plasma NfL levels and longitudinal change rates in C9orf72 and GRN-associated diseases: from tailored references to clinical applications

Dario Saracino , Karim Dorgham , Agnès Camuzat , Daisy Rinaldi , Armelle Rametti-Lacroux et al.
Journal of Neurology, Neurosurgery and Psychiatry, 2021, 92 (12), pp.1278-1288. ⟨10.1136/jnnp-2021-326914⟩
Article dans une revue hal-03337055 v1
Image document

Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation

Junhao Wen , Elina Thibeau-Sutre , Mauricio Diaz-Melo , Jorge Samper-González , Alexandre Routier et al.
Medical Image Analysis, 2020, 63, pp.101694. ⟨10.1016/j.media.2020.101694⟩
Article dans une revue hal-02562504 v2
Image document

Learning the spatiotemporal variability in longitudinal shape data sets

Alexandre Bône , Olivier Colliot , Stanley Durrleman
International Journal of Computer Vision, 2020, 128, pp.2873-2896. ⟨10.1007/s11263-020-01343-w⟩
Article dans une revue hal-02091549 v5
Image document

Plasma microRNA signature in presymptomatic and symptomatic subjects with C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Vincent Anquetil , Dario Saracino , Daisy Rinaldi , Agnès Camuzat et al.
Journal of Neurology, Neurosurgery and Psychiatry, 2020, 92 (5), pp.485-493. ⟨10.1136/jnnp-2020-324647⟩
Article dans une revue hal-03046771 v1
Image document

Genome wide association study of incomplete hippocampal inversion in adolescents

Claire Cury , Marzia Antonella Scelsi , Roberto Toro , Vincent Frouin , Eric Artiges et al.
PLoS ONE, 2020, 15 (1), ⟨10.1371/journal.pone.0227355⟩
Article dans une revue hal-02416654 v2
Image document

A unified framework for association and prediction from vertex-wise grey-matter structure

Baptiste Couvy‐duchesne , Lachlan T Strike , Futao Zhang , Yan Holtz , Zhili Zheng et al.
Human Brain Mapping, 2020, ⟨10.1002/hbm.25109⟩
Article dans une revue hal-02904458 v1
Image document

Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge

Baptiste Couvy-Duchesne , Johann Faouzi , Benoît Martin , Elina Thibeau-Sutre , Adam Wild et al.
Frontiers in Psychiatry, 2020, 11, ⟨10.3389/fpsyt.2020.593336⟩
Article dans une revue hal-03136463 v1
Image document

Machine learning for classification and prediction of brain diseases: recent advances and upcoming challenges

Ninon Burgos , Olivier Colliot
Current Opinion in Neurology, 2020, 33 (4), pp.439-450. ⟨10.1097/WCO.0000000000000838⟩
Article dans une revue hal-02902586 v1
Image document

Comparison and validation of seven white matter hyperintensities segmentation software in elderly patients

Quentin Vanderbecq , Eric Xu , Sebastian Stroër , Baptiste Couvy-Duchesne , Mauricio Diaz-Melo et al.
Neuroimage-Clinical, 2020, 27, pp.102357. ⟨10.1016/j.nicl.2020.102357⟩
Article dans une revue hal-02926474 v1
Image document

Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort

Alexandre Morin , Jorge Samper-González , Anne Bertrand , Sebastian Ströer , Didier Dormont et al.
Journal of Alzheimer's Disease, 2020, pp.1-10. ⟨10.3233/JAD-190594⟩
Article dans une revue hal-02511532 v1
Image document

Predicting PET-derived Myelin Content from Multisequence MRI for Individual Longitudinal Analysis in Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Matteo Tonietto , Stanley Durrleman et al.
NeuroImage, 2020, 223C (117308), ⟨10.1016/j.neuroimage.2020.117308⟩
Article dans une revue hal-02922534 v1
Image document

Cognitive inhibition impairments in presymptomatic C9orf72 carriers

Maxime Montembeault , Sabrina Sayah , Daisy Rinaldi , Benjamin Le Toullec , Anne Bertrand et al.
Journal of Neurology, Neurosurgery and Psychiatry, 2020, ⟨10.1136/jnnp-2019-322242⟩
Article dans une revue hal-02484794 v1
Image document

Automated Categorization of Parkinsonian Syndromes Using Magnetic Resonance Imaging in a Clinical Setting

Lydia Chougar , Johann Faouzi , Nadya Pyatigorskaya , Lydia Yahia‐cherif , Rahul Gaurav et al.
Movement Disorders, 2020, ⟨10.1002/mds.28348⟩
Article dans une revue hal-03046578 v2
Image document

The White Matter Module-Hub Network of Semantics Revealed by Semantic Dementia

Martina Sundqvist , Alexandre Routier , Bruno Dubois , Olivier Colliot , Marc Teichmann
Journal of Cognitive Neuroscience, 2020, pp.1-18. ⟨10.1162/jocn_a_01549⟩
Article dans une revue hal-02554966 v1
Image document

Neurite density is reduced in the presymptomatic phase of C9orf72 disease

Junhao Wen , Hui Zhang , Daniel C Alexander , Stanley Durrleman , Alexandre Routier et al.
Journal of Neurology, Neurosurgery and Psychiatry, 2019, J Neurol Neurosurg Psychiatry, 90 (4), pp.387-94. ⟨10.1136/jnnp-2018-318994⟩
Article dans une revue hal-01907482 v1
Image document

Fluid-attenuated inversion recovery MRI synthesis from multisequence MRI using three-dimensional fully convolutional networks for multiple sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Olivier Colliot et al.
Journal of Medical Imaging, 2019, 6 (01), ⟨10.1117/1.JMI.6.1.014005⟩
Article dans une revue hal-02042526 v2
Image document

Differential default mode network trajectories in asymptomatic individuals at risk for Alzheimer's disease

Patrizia A Chiesa , Enrica Cavedo , Andrea Vergallo , Simone Lista , Marie-Claude Potier et al.
Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 2019, 15 (7), pp.940-950. ⟨10.1016/j.jalz.2019.03.006⟩
Article dans une revue hal-02368904 v1
Image document

Predicting PET-derived Demyelination from Multimodal MRI using Sketcher-Refiner Adversarial Training for Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Nicholas Ayache et al.
Medical Image Analysis, 2019, 58 (101546), ⟨10.1016/j.media.2019.101546⟩
Article dans une revue hal-02276634 v1
Image document

Disrupted core-periphery structure of multimodal brain networks in Alzheimer’s disease

Jérémy Guillon , Mario Chavez , Federico Battiston , Yohan Attal , Valentina La Corte et al.
Network Neuroscience, 2019, 3 (2), pp.635-652. ⟨10.1162/netn_a_00087⟩
Article dans une revue hal-02265308 v1
Image document

Tribute to Anne Bertrand (1978–2018): Neuroradiologist, scientist, teacher and friend

Didier Dormont , Noam Ben-Eliezer , Ninon Burgos , Olivier Colliot , Fabrizio de Vico Fallani et al.
Journal de Neuroradiologie / Journal of Neuroradiology, 2019, 46 (2), pp.155-159. ⟨10.1016/j.neurad.2019.01.001⟩
Article dans une revue hal-02265305 v1
Image document

Reduction of recruitment costs in preclinical AD trials. Validation of automatic pre-screening algorithm for brain amyloidosis

Manon Ansart , Stéphane Epelbaum , Geoffroy Gagliardi , Olivier Colliot , Didier Dormont et al.
Statistical Methods in Medical Research, 2019, pp.096228021882303. ⟨10.1177/0962280218823036⟩
Article dans une revue hal-01964942 v2
Image document

Interpretable and reliable artificial intelligence systems for brain diseases

Olivier Colliot
ERCIM News, 2019, 118
Article dans une revue hal-02178901 v1
Image document

Sulcal morphology in Alzheimer's disease: an effective marker of diagnosis and cognition

Maxime Bertoux , Julien Lagarde , Fabian Corlier , Lorraine Hamelin , Jean-François Mangin et al.
Neurobiology of Aging, 2019, Epub ahead of print. ⟨10.1016/j.neurobiolaging.2019.07.015⟩
Article dans une revue inserm-02266990 v1
Image document

Presymptomatic spinal cord pathology in c9orf72 mutation carriers: a longitudinal neuroimaging study

Giorgia Querin , Peter Bede , Mohamed Mounir El Mendili , Menghan Li , Mélanie Pélégrini-Issac et al.
Annals of Neurology, 2019, 86 (2), pp.158-167. ⟨10.1002/ana.25520⟩
Article dans une revue hal-02265301 v1
Image document

Relations between C9orf72 expansion size in blood, age at onset, age at collection and transmission across generations in patients and presymptomatic carriers

Clémence Fournier , Mathieu Barbier , Agnès Camuzat , Vincent Anquetil , Serena Lattante et al.
Neurobiology of Aging, 2019, 74, pp.234.e1-234.e8. ⟨10.1016/j.neurobiolaging.2018.09.010⟩
Article dans une revue hal-02025976 v1
Image document

Early cognitive, structural and microstructural changes in c9orf72 presymptomatic carriers before 40 years of age

Anne Bertrand , Junhao Wen , Daisy Rinaldi , Marion Houot , Sabrina Sayah et al.
JAMA neurology, 2018, 75 (2), pp.236-245. ⟨10.1001/jamaneurol.2017.4266⟩
Article dans une revue hal-01654000 v1
Image document

Cognitive and neuroimaging features and brain β-amyloidosis in individuals at risk of Alzheimer's disease (INSIGHT-preAD): a longitudinal observational study

Bruno Dubois , Stéphane Epelbaum , Francis Nyasse , Hovagim Bakardjian , Geoffroy Gagliardi et al.
The Lancet Neurology, 2018, 17 (4), pp.335 - 346. ⟨10.1016/S1474-4422(18)30029-2⟩
Article dans une revue hal-01777834 v1
Image document

Structural, Microstructural, and Metabolic Alterations in Primary Progressive Aphasia Variants

Alexandre Routier , Marie-Odile Habert , Anne Bertrand , Aurélie Kas , Martina Sundqvist et al.
Frontiers in Neurology, 2018, 9, ⟨10.3389/fneur.2018.00766⟩
Article dans une revue hal-01897015 v1

Cerebral microbleeds and CSF Alzheimer biomarkers in primary progressive aphasias

Aline Mendes , Anne Bertrand , Foudil Lamari , Olivier Colliot , Alexandre Routier et al.
Neurology, 2018, 90 (12), pp.e1057 - e1065. ⟨10.1212/WNL.0000000000005165⟩
Article dans une revue hal-01820415 v1
Image document

The structure of the mental lexicon: what primary progressive aphasias reveal

Clara Sanches , Alexandre Routier , Olivier Colliot , Marc Teichmann
Neuropsychologia, 2018, 109, pp.107-115. ⟨10.1016/j.neuropsychologia.2017.12.018⟩
Article dans une revue hal-01672932 v1
Image document

Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data

Jorge Samper-González , Ninon Burgos , Simona Bottani , Sabrina Fontanella , Pascal Lu et al.
NeuroImage, 2018, 183, pp.504-521. ⟨10.1016/j.neuroimage.2018.08.042⟩
Article dans une revue hal-01858384 v2
Image document

Revolution of Alzheimer Precision Neurology. Passageway of Systems Biology and Neurophysiology

Harald Hampel , Nicola Toschi , Claudio Babiloni , Filippo Baldacci , Keith L Black et al.
Journal of Alzheimer's Disease, 2018, 64 (s1), pp.S47 - S105. ⟨10.3233/jad-179932⟩
Article dans une revue hal-01910402 v1
Image document

Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids

Claire Cury , Joan Glaunès , Roberto Toro , Marie Chupin , Gunter Schumann et al.
Frontiers in Neuroscience, 2018, 12, pp.803. ⟨10.3389/fnins.2018.00803⟩
Article dans une revue hal-01920263 v2
Image document

Spatiotemporal Propagation of the Cortical Atrophy: Population and Individual Patterns

Igor Koval , Jean-Baptiste Schiratti , Alexandre M Routier , Michael Bacci , Olivier Colliot et al.
Frontiers in Neurology, 2018, 9, pp.235. ⟨10.3389/fneur.2018.00235⟩
Article dans une revue hal-01910400 v1
Image document

An Automated Pipeline for the Analysis of PET Data on the Cortical Surface

Arnaud Marcoux , Ninon Burgos , Anne Bertrand , Marc Teichmann , Alexandre Routier et al.
Frontiers in Neuroinformatics, 2018, 12, ⟨10.3389/fninf.2018.00094⟩
Article dans une revue hal-01950933 v1
Image document

Double diffeomorphism: combining morphometry and structural connectivity analysis

Pietro Gori , Olivier Colliot , Linda Marrakchi Kacem , Yulia Worbe , Alexandre Routier et al.
IEEE Transactions on Medical Imaging, 2018, 37 (9), pp.2033-2043. ⟨10.1109/TMI.2018.2813062⟩
Article dans une revue hal-01709847 v2
Image document

Multi-modal brain fingerprinting: a manifold approximation based framework

Kuldeep Kumar , Laurent Chauvin , Matthew Toews , Olivier Colliot , Christian Desrosiers
NeuroImage, 2018, 183, pp.212 - 226. ⟨10.1016/j.neuroimage.2018.08.006⟩
Article dans une revue hal-01910367 v1
Image document

Amyloidosis and neurodegeneration result in distinct structural connectivity patterns in mild cognitive impairment

Thomas Jacquemont , Fabrizio de Vico Fallani , Anne Bertrand , Stéphane Epelbaum , Alexandre Routier et al.
Neurobiology of Aging, 2017, ⟨10.1016/j.neurobiolaging.2017.03.023⟩
Article dans une revue hal-01518785 v1
Image document

Fiberprint: A subject fingerprint based on sparse code pooling for white matter fiber analysis

Kuldeep Kumar , Christian Desrosiers , Kaleem Siddiqi , Olivier Colliot , Matthew Toews
NeuroImage, 2017, 158, pp.242 - 259. ⟨10.1016/j.neuroimage.2017.06.083⟩
Article dans une revue hal-01562449 v1

Cortical amyloid accumulation is associated with alterations of structural integrity in older people with subjective memory complaints

Stefan Teipel , Enrica Cavedo , Sarah Weschke , Michel Grothe , Katrine Rojkova et al.
Neurobiology of Aging, 2017, 57, pp.143-152. ⟨10.1016/j.neurobiolaging.2017.05.016⟩
Article dans une revue hal-03769687 v1
Image document

A Bayesian mixed-effects model to learn trajectories of changes from repeated manifold-valued observations

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Olivier Colliot , Stanley Durrleman
Journal of Machine Learning Research, 2017, 18, pp.1-33
Article dans une revue hal-01540367 v3
Image document

Early life adversity is associated with a smaller hippocampus in male but not female depressed in-patients: a case–control study

Romain Colle , Tomoyuki Segawa , Marie Chupin , Minh Ngoc Thien Kim Tran Dong , Patrick Hardy et al.
BMC Psychiatry, 2017, 17 (1), pp.71. ⟨10.1186/s12888-017-1233-2⟩
Article dans une revue hal-01474139 v1
Image document

Reduced basal forebrain atrophy progression in a randomized Donepezil trial in prodromal Alzheimer's disease

Enrica Cavedo , Michel J Grothe , Olivier Colliot , Simone Lista , Marie Chupin et al.
Scientific Reports, 2017, 7 (1), pp.11706. ⟨10.1038/s41598-017-09780-3⟩
Article dans une revue hal-01589622 v1
Image document

A Bayesian Framework for Joint Morphometry of Surface and Curve meshes in Multi-Object Complexes

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Cyril Poupon et al.
Medical Image Analysis, 2017, 35, pp.458-474. ⟨10.1016/j.media.2016.08.011⟩
Article dans une revue hal-01359423 v1
Image document

Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease

Claire Cury , Joan Glaunès , Marie Chupin , Olivier Colliot
Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2017, 5 (5), pp.350 - 358. ⟨10.1080/21681163.2015.1035403⟩
Article dans une revue hal-01135304 v1
Image document

Loss of brain inter-frequency hubs in Alzheimer's disease.

Jérémy Guillon , Yohan Attal , Valentina La Corte , Olivier Colliot , Bruno Dubois et al.
Scientific Reports, 2017, 7 (1), pp.10879. ⟨10.1038/s41598-017-07846-w⟩
Article dans une revue hal-01578419 v1

Smaller hippocampal volumes predict lower antidepressant response/remission rates in depressed patients: A meta-analysis

Romain Colle , Irène Dupong , Olivier Colliot , Eric Deflesselle , Patrick Hardy et al.
World Journal of Biological Psychiatry, 2016, pp.1-23. ⟨10.1080/15622975.2016.1208840⟩
Article dans une revue hal-01372398 v1

Predictors of cognitive decline and treatment response in a clinical trial on suspected prodromal Alzheimer's disease

Stefan J Teipel , Enrica Cavedo , Michel J Grothe , Simone Lista , Samantha Galluzzi et al.
Neuropharmacology, 2016, 108, pp.128-35. ⟨10.1016/j.neuropharm.2016.02.005⟩
Article dans une revue hal-01372417 v1
Image document

Hippocampal volume predicts antidepressant efficacy in depressed patients without incomplete hippocampal inversion

Romain Colle , Claire Cury , Marie Chupin , Eric Deflesselle , Patrick Hardy et al.
Neuroimage-Clinical, 2016, ⟨10.1016/j.nicl.2016.04.009⟩
Article dans une revue hal-01310464 v1
Image document

Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Fabrizio de Vico Fallani et al.
IEEE Transactions on Medical Imaging, 2016, PP (99), ⟨10.1109/TMI.2016.2591080⟩
Article dans une revue hal-01346067 v1
Image document

Reduced Regional Cortical Thickness Rate of Change in Donepezil-Treated Subjects With Suspected Prodromal Alzheimer’s Disease

Enrica Cavedo , Bruno Dubois , Olivier Colliot , Simone Lista , Bernard Croisile et al.
Journal of Clinical Psychiatry, 2016, ⟨10.4088/JCP.15m10413⟩
Article dans une revue hal-01388951 v1
Image document

Robust imaging of hippocampal inner structure at 7T: in vivo acquisition protocol and methodological choices

Linda Marrakchi-Kacem , Alexandre Vignaud , Julien Sein , Johanne Germain , Thomas R Henry et al.
Magnetic Resonance Materials in Physics, Biology and Medicine, 2016
Article dans une revue hal-01321870 v2

Early and protective microglial activation in Alzheimer's disease: a prospective study using 18F-DPA-714 PET imaging

Lorraine Hamelin , Julien Lagarde , Guillaume Dorothée , Claire Leroy , Mickael Labit et al.
Brain - A Journal of Neurology , 2016, 139 (Pt 4), pp.1252-64. ⟨10.1093/brain/aww017⟩
Article dans une revue hal-01372414 v1
Image document

White matter lesions in FTLD: distinct phenotypes characterize GRN and C9ORF72 mutations

Fatima Ameur , Olivier Colliot , Paola Caroppo , Sebastian Stroer , Didier Dormont et al.
Neurology Genetics, 2016, 2 (1), ⟨10.1212/NXG.0000000000000047⟩
Article dans une revue hal-01266596 v1
Image document

CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts

Grégory Operto , Marie Chupin , Bénédicte Batrancourt , Marie-Odile Habert , Olivier Colliot et al.
Neuroinformatics, 2016, pp.1-12. ⟨10.1007/s12021-016-9295-8⟩
Article dans une revue hal-01303094 v1

Depressed suicide attempters have smaller hippocampus than depressed patients without suicide attempts

Romain Colle , Marie Chupin , Claire Cury , Christophe Vandendrie , Florence Gressier et al.
Journal of Psychiatric Research, 2015, 61, pp.6. ⟨10.1016/j.jpsychires.2014.12.010⟩
Article dans une revue hal-01108928 v1

Donepezil decreases annual rate of hippocampal atrophy in suspected prodromal Alzheimer's disease

Bruno Dubois , Marie Chupin , Harald Hampel , Simone Lista , Enrica Cavedo et al.
Alzheimer's & Dementia : the Journal of the Alzheimer's Association, 2015, 11 (9), pp.1041-1049. ⟨10.1016/j.jalz.2014.10.003⟩
Article dans une revue hal-01249861 v1
Image document

Incomplete Hippocampal Inversion: A Comprehensive MRI Study of Over 2000 Subjects

Claire Cury , Roberto Toro , Fanny Cohen , Clara Fischer , Amel Mhaya et al.
Frontiers in Neuroanatomy, 2015, 9, pp.160. ⟨10.3389/fnana.2015.00160⟩
Article dans une revue hal-01251239 v1
Image document

Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease?

Paola Caroppo , Marie-Odile Habert , Stanley Durrleman , Aurélie Funkiewiez , Vincent Perlbarg et al.
Journal of Alzheimer's Disease, 2015, 47 (3), pp.751-9. ⟨10.3233/JAD-150270⟩
Article dans une revue hal-01220380 v1

Sulcal morphology as a new imaging marker for the diagnosis of early onset Alzheimer's disease

Lorraine Hamelin , Maxime Bertoux , Michel Bottlaender , Helene Corne , Julien Lagarde et al.
Neurobiology of Aging, 2015, 36 (11), pp.2932-9. ⟨10.1016/j.neurobiolaging.2015.04.019⟩
Article dans une revue hal-01254276 v1

Perspective on future role of biological markers in clinical therapy trials of Alzheimer's disease: a long-range point of view beyond 2020

Harald Hampel , Simone Lista , Stefan J Teipel , Francesco Garaci , Robert Nisticò et al.
Biochemical Pharmacology, 2014, pp.426-49
Article dans une revue hal-01098832 v1
Image document

Detection of volume loss in hippocampal layers in Alzheimer's disease using 7 T MRI: a feasibility study

Claire Boutet , Marie Chupin , Stéphane Lehéricy , Linda Marrakchi-Kacem , Stéphane Epelbaum et al.
Neuroimage-Clinical, 2014, 5, pp.341-8
Article dans une revue hal-01099185 v1

Extensive white matter involvement in patients with frontotemporal lobar degeneration: think progranulin

Paola Caroppo , Isabelle Le Ber , Agnès Camuzat , Fabienne Clot , Lionel Naccache et al.
JAMA neurology, 2014, 71 (12), pp.1562-6
Article dans une revue hal-01439037 v1

Structural connectivity differences in left and right temporal lobe epilepsy

Pierre Besson , Vera Dinkelacker , Romain Valabregue , Lionel Thivard , Xavier Leclerc et al.
NeuroImage, 2014, pp.135-44
Article dans une revue hal-01098831 v1
Image document

The road ahead to cure Alzheimer’s disease: development of biological markers and neuroimaging methods for prevention trials across all stages and target populations

Enrica Cavedo , Simone Lista , Zaven S Khachaturian , Paul S Aisen , Philippe Amouyel et al.
The Journal of prevention of Alzheimer's disease, 2014, 1 (3), pp.181-202. ⟨10.14283/jpad.2014.32⟩
Article dans une revue hal-01098836 v1

The clinical and anatomical heterogeneity of environmental dependency phenomena

Julien Lagarde , Romain Valabrègue , Jean-Christophe Corvol , Isabelle Le Ber , Olivier Colliot et al.
Journal of Neurology, 2013, 260 (9), pp.2262-70. ⟨10.1007/s00415-013-6976-1⟩
Article dans une revue istex hal-00867487 v1
Image document

Magnetic resonance imaging for diagnosis of early Alzheimer's disease

Olivier Colliot , Lorraine Hamelin , Marie Sarazin
Revue Neurologique, 2013, 169 (10), pp.724-8. ⟨10.1016/j.neurol.2013.07.013⟩
Article dans une revue hal-00867481 v1
Image document

Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data

Rémi Cuingnet , Joan Alexis Glaunès , Marie Chupin , Habib Benali , Olivier Colliot
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2013, 35 (3), pp.682 - 696. ⟨10.1109/TPAMI.2012.142⟩
Article dans une revue hal-00790079 v1

Is Hippocampal Volume a Good Marker to Differentiate Alzheimer's Disease from Frontotemporal Dementia?

Leonardo Cruz de Souza , Marie Chupin , Maxime Bertoux , Stéphane Lehéricy , Bruno Dubois et al.
Journal of Alzheimer's Disease, 2013, 36 (1), pp.57-66. ⟨10.3233/JAD-122293⟩
Article dans une revue hal-00815740 v1

CSF tau markers are correlated with hippocampal volume in Alzheimer's disease

Leonardo C de Souza , Marie Chupin , Foudil Lamari , Claude Jardel , Delphine Leclercq et al.
Neurobiology of Aging, 2012, 33 (7), pp.1253-7. ⟨10.1016/j.neurobiolaging.2011.02.022⟩
Article dans une revue istex hal-00795742 v1

Distinct patterns of antiamyloid-β antibodies in typical and atypical Alzheimer disease

Guillaume Dorothée , Michel Bottlaender , Edmond Moukari , Leonardo de Souza , Renaud Maroy et al.
Archives of Neurology -Chigago-, 2012, 69 (9), pp.1181-1185. ⟨10.1001/archneurol.2012.604⟩
Article dans une revue hal-00790083 v1

Is radiological evaluation as good as computer-based volumetry to assess hippocampal atrophy in Alzheimer's disease?

Claire Boutet , Marie Chupin , Olivier Colliot , Marie Sarazin , Gurkan Mutlu et al.
Neuroradiology, 2012, 54 (12), pp.1321-1330. ⟨10.1007/s00234-012-1058-0⟩
Article dans une revue istex hal-00790081 v1
Image document

Contrast-based fully automatic segmentation of white matter hyperintensities: method and validation

Thomas Samaille , Ludovic Fillon , Rémi Cuingnet , Eric Jouvent , Hugues Chabriat et al.
PLoS ONE, 2012, 7 (11), pp.e48953. ⟨10.1371/journal.pone.0048953⟩
Article dans une revue hal-00789657 v1

Automatic hippocampal segmentation in temporal lobe epilepsy: impact of developmental abnormalities

Hosung Kim , Marie Chupin , Olivier Colliot , Boris C Bernhardt , Neda Bernasconi et al.
NeuroImage, 2012, 59 (4), pp.3178-3186. ⟨10.1016/j.neuroimage.2011.11.040⟩
Article dans une revue istex hal-00790810 v1

Segmentation ciblée d’images IRM et maladie d’Alzheimer

Marie Chupin , Emilie Gérardin , Rémi Cuingnet , Eric Bardinet , Didier Dormont et al.
Innovation and Research in BioMedical engineering, 2011
Article dans une revue hal-01413898 v1

Diffeomorphic brain registration under exhaustive sulcal constraints.

Guillaume Auzias , Olivier Colliot , Joan Alexis Glaunès , Matthieu Perrot , Jean-François Mangin et al.
IEEE Transactions on Medical Imaging, 2011, 30 (6), pp.1214-1227. ⟨10.1109/TMI.2011.2108665⟩
Article dans une revue hal-00793675 v1
Image document

Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database

Rémi Cuingnet , Emilie Gerardin , Jérôme Tessieras , Guillaume Auzias , Stéphane Lehéricy et al.
NeuroImage, 2011, 56 (2), pp.766-81. ⟨10.1016/j.neuroimage.2010.06.013⟩
Article dans une revue hal-00795739 v1

Early ADC changes in motor structures predict outcome of acute stroke better than lesion volume

Charlotte Rosso , Olivier Colliot , Christian Pires , Christine Delmaire , Romain Valabrègue et al.
Journal de Neuroradiologie / Journal of Neuroradiology, 2011, 38 (2), pp.105-12. ⟨10.1016/j.neurad.2010.05.001⟩
Article dans une revue hal-00805381 v1

Line Garnero (1955-2009): pluridisciplinarity at the heart. Tribute to Line Garnero, director of research at CNRS.

Sylvain Baillet , Jean Brunol , Pierre Chavel , Olivier Colliot , Mireille Cuniot-Ponsard et al.
Innovation and Research in BioMedical engineering, 2011, 32 (1), pp.1-7
Article dans une revue hal-00671399 v1

Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome

Rémi Cuingnet , Charlotte Rosso , Marie Chupin , Stéphane Lehéricy , Didier Dormont et al.
Medical Image Analysis, 2011, 15 (5), pp.729-37. ⟨10.1016/j.media.2011.05.007⟩
Article dans une revue istex hal-00795741 v1

Tissue at risk in the deep middle cerebral artery territory is critical to stroke outcome.

Charlotte Rosso , Olivier Colliot , Romain Valabrègue , Sophie Crozier , Didier Dormont et al.
Neuroradiology, 2011, 53 (10), pp.763-71. ⟨10.1007/s00234-011-0916-5⟩
Article dans une revue istex hal-00795756 v1

Similar amyloid-β burden in posterior cortical atrophy and Alzheimer's disease

Leonardo Cruz de Souza , Fabian Corlier , Marie-Odile Habert , Olga Uspenskaya , Renaud Maroy et al.
Brain - A Journal of Neurology , 2011, 134 (Pt 7), pp.2036-43. ⟨10.1093/brain/awr130⟩
Article dans une revue hal-00795743 v1

The amnestic syndrome of hippocampal type in Alzheimer's disease: an MRI study

Marie Sarazin , Valérie Chauviré , Emilie Gerardin , Olivier Colliot , Serge Kinkingnéhun et al.
Journal of Alzheimer's Disease, 2010, 22 (1), pp.285-94. ⟨10.3233/JAD-2010-091150⟩
Article dans une revue hal-00805385 v1

Distinct structural changes underpin clinical phenotypes in patients with Gilles de la Tourette syndrome

Yulia Worbe , Emilie Gerardin , Andreas Hartmann , Romain Valabrégue , Marie Chupin et al.
Brain - A Journal of Neurology , 2010, 133 (Pt 12), pp.3649-60. ⟨10.1093/brain/awq293⟩
Article dans une revue istex hal-00805386 v1

Support vector machine-based classification of Alzheimer's disease from whole-brain anatomical MRI

Benoît Magnin , Lilia Mesrob , Serge Kinkingnéhun , Mélanie Pélégrini-Issac , Olivier Colliot et al.
Neuroradiology, 2009, 51 (2), pp.73-83. ⟨10.1007/s00234-008-0463-x⟩
Article dans une revue istex hal-00805439 v1
Image document

Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging

Emilie Gerardin , Gaël Chételat , Marie Chupin , Rémi Cuingnet , Béatrice Desgranges et al.
NeuroImage, 2009, 47 (4), pp.1476-86. ⟨10.1016/j.neuroimage.2009.05.036⟩
Article dans une revue hal-00805434 v1

Fully automatic hippocampus segmentation and classification in Alzheimer's disease and mild cognitive impairment applied on data from ADNI

Marie Chupin , Emilie Gérardin , Rémi Cuingnet , Claire Boutet , Louis Lemieux et al.
Hippocampus, 2009, 19 (6), pp.579-87. ⟨10.1002/hipo.20626⟩
Article dans une revue hal-00805428 v1

Can voxel based morphometry, manual segmentation and automated segmentation equally detect hippocampal volume differences in acute depression?

Loretxu Bergouignan , Marie Chupin , Yvonne Czechowska , Serge Kinkingnéhun , Cédric Lemogne et al.
NeuroImage, 2009, 45 (1), pp.29-37. ⟨10.1016/j.neuroimage.2008.11.006⟩
Article dans une revue istex hal-00805422 v1

Automatic segmentation of the hippocampus and the amygdala driven by hybrid constraints: method and validation

Marie Chupin , A. Hammers , R. S. N. Liu , Olivier Colliot , J. Burdett et al.
NeuroImage, 2009, 46 (3), pp.749-61. ⟨10.1016/j.neuroimage.2009.02.013⟩
Article dans une revue hal-00805390 v1
Image document

3D brain tumor segmentation in MRI using fuzzy classification, symmetry analysis and spatially constrained deformable models

Hassan Khotanlou , Olivier Colliot , Jamal Atif , Isabelle Bloch
Fuzzy Sets and Systems, 2009, 160 (10), ⟨10.1016/j.fss.2008.11.016⟩
Article dans une revue hal-01251278 v1

Basal temporal sulcal morphology in healthy controls and patients with temporal lobe epilepsy

H. Kim , N. Bernasconi , B. Bernhardt , Olivier Colliot , A. Bernasconi
Neurology, 2008, 70 (22 Pt 2), pp.2159-65. ⟨10.1212/01.wnl.0000313150.62832.79⟩
Article dans une revue hal-00805437 v1
Image document

Using anatomical knowledge expressed as fuzzy constraints to segment the heart in CT images

A. Moreno , C.M. Takemura , Olivier Colliot , O. Camara , Isabelle Bloch
Pattern Recognition, 2008, 41 (8), ⟨10.1016/j.patcog.2008.01.020⟩
Article dans une revue hal-01251275 v1
Image document

L'apport de la neuroimagerie dans la maladie d'Alzheimer

Olivier Colliot , Marie Chupin , Marie Sarazin , Marie-Odile Habert , Didier Dormont et al.
PSN – Psychiatrie, Sciences humaines, Neurosciences, 2008
Article dans une revue hal-01413895 v1
Image document

Discrimination between Alzheimer disease, mild cognitive impairment, and normal aging by using automated segmentation of the hippocampus.

Olivier Colliot , Gaël Chételat , Marie Chupin , Béatrice Desgranges , Benoît Magnin et al.
Radiology, 2008, 248 (1), pp.194-201. ⟨10.1148/radiol.2481070876⟩
Article dans une revue inserm-00383265 v1

Explicit incorporation of prior anatomical information into a nonrigid registration of thoracic and abdominal CT and 18-FDG whole-body emission PET images.

Oscar Camara , Gaspar Delso , Olivier Colliot , Antonio Moreno-Ingelmo , Isabelle Bloch
IEEE Transactions on Medical Imaging, 2007, 26 (2), pp.164-78
Article dans une revue hal-01366555 v1
Image document

Integration of fuzzy spatial relations in deformable models - application to brain MRI segmentation

Olivier Colliot , Oscar Camara , Isabelle Bloch
Pattern Recognition, 2006, 39 (8), pp.1401-1414. ⟨10.1016/j.patcog.2006.02.022⟩
Article dans une revue hal-00878443 v1
Image document

Individual voxel-based analysis of gray matter in focal cortical dysplasia.

Olivier Colliot , Neda Bernasconi , Najmeh Khalili , Samson B Antel , Véronique Naessens et al.
NeuroImage, 2006, 29 (1), pp.162-71. ⟨10.1016/j.neuroimage.2005.07.021⟩
Article dans une revue hal-01259130 v1
Image document

On the ternary spatial relation "Between

Isabelle Bloch , Olivier Colliot , Roberto M. Cesar
IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics, 2006, 36 (2), pp.312-327. ⟨10.1109/TSMCB.2005.857095⟩
Article dans une revue hal-01251251 v1

In vivo profiling of focal cortical dysplasia on high-resolution MRI with computational models.

Olivier Colliot , Samson B Antel , Veronique B Naessens , Neda Bernasconi , Andrea Bernasconi
Epilepsia, 2006, 47 (1), pp.134-42
Article dans une revue hal-01259128 v1
Image document

Segmentation of focal cortical dysplasia lesions on MRI using level set evolution

Olivier Colliot , Tommaso Mansi , N. Bernasconi , V. Naessens , D. Klironomos et al.
NeuroImage, 2006, 32 (4), pp.1621-1630. ⟨10.1016/j.neuroimage.2006.04.225⟩
Article dans une revue inria-00614998 v1
Image document

Fusion of spatial relationships for guiding recognition, example of brain structure recognition in 3D MRI

Isabelle Bloch , Olivier Colliot , Oscar Camara , Thierry Géraud
Pattern Recognition Letters, 2005, 26 (4), pp.449-457. ⟨10.1016/j.patrec.2004.08.009⟩
Article dans une revue hal-01251245 v1
Image document

Un modèle déformable intégrant des relations spatiales pour la segmentation de structures cérébrales

Olivier Colliot , Oscar Camara , Isabelle Bloch
Revue I3 - Information Interaction Intelligence, 2005, 5 (1), pp.29-58
Article dans une revue hal-01413894 v1
Image document

Approximate reflectional symmetries of fuzzy objects with an application in model-based object recognition

Olivier Colliot , Alexander V. Tuzikov , Roberto M. Cesar , Isabelle Bloch
Fuzzy Sets and Systems, 2004, 147 (1), pp.141-163. ⟨10.1016/j.fss.2003.07.003⟩
Article dans une revue hal-01251244 v1
Image document

Computational modeling of thoracic and abdominal anatomy using spatial relationships for image segmentation

Oscar Camara , Olivier Colliot , Isabelle Bloch
Real Time Imaging, 2004, 10 (4), pp.263-273. ⟨10.1016/j.rti.2004.05.005⟩
Article dans une revue hal-01251241 v1
Image document

Evaluation of the symmetry plane in 3D MR brain images

Alexander V. Tuzikov , Olivier Colliot , Isabelle Bloch
Pattern Recognition Letters, 2003, 24 (14), pp.2219-2233. ⟨10.1016/S0167-8655(03)00049-7⟩
Article dans une revue hal-01227827 v1
Image document

Comparing foundation models and nnU-Net for segmentation of primary brain lymphoma on clinical routine post-contrast T1-weighted MRI

Guanghui Fu , Lucia Nichelli , Dario Herran , Romain Valabregue , Agusti Alentorn et al.
SPIE Medical Imaging, SPIE, Feb 2025, San diego (Californie), United States
Communication dans un congrès hal-04447318 v4
Image document

Detecting Brain Anomalies in Clinical Routine with the β-VAE: Feasibility Study on Age-Related White Matter Hyperintensities

Sophie Loizillon , Yannick Jacob , Aurelien Maire , Didier Dormont , Olivier Colliot et al.
Medical Imaging with Deep Learning - MIDL 2024, Jul 2024, Paris, France
Communication dans un congrès hal-04674025 v1
Image document

Recent advances in the open-source ClinicaDL software for reproducible neuroimaging with deep learning

Ravi Hassanaly , Camille Brianceau , Mauricio Diaz , Sophie Loizillon , Elina Thibeau-Sutre et al.
SPIE Medical Imaging, Feb 2024, San Diego, United States. pp.519-524, ⟨10.1117/12.3006039⟩
Communication dans un congrès hal-04419141 v1
Image document

Clinica, an open-source software to facilitate neuroimaging studies

Matthieu Joulot , Nicolas Gensollen , Ghislain Vaillant , Ninon Burgos , Olivier Colliot
Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), Mar 2024, Grenoble, France
Communication dans un congrès hal-04653352 v1
Image document

Leveraging noise and contrast simulation for the automatic quality control of routine clinical T1-weighted brain MRI

Sophie Loizillon , Stéphane Mabille , Simona Bottani , Yannick Jacob , Aurélien Maire et al.
SPIE Medical Imaging 2024: Image Processing, Feb 2024, San Diego (CA), United States. ⟨10.1117/12.3005781⟩
Communication dans un congrès hal-04674029 v1
Image document

Confidence intervals uncovered: Are we ready for real-world medical imaging AI?

Evangelia Christodoulou , Annika Reinke , Rola Houhou , Piotr Kalinowski , Selen Erkan et al.
MICCAI 2024 - 27th International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2024, Marrakech, Morocco. pp.124-132, ⟨10.1007/978-3-031-72117-5_12⟩
Communication dans un congrès hal-04715638 v1
Image document

The intriguing effect of frequency disentangled learning on medical image segmentation

Guanghui Fu , Gabriel Jiménez , Sophie Loizillon , Lydia Chougar , Didier Dormont et al.
Medical Imaging 2024, Feb 2024, San Diego, CA, United States. pp.49, ⟨10.1117/12.2692286⟩
Communication dans un congrès hal-04654627 v1
Image document

Automatic quality control of segmentation results using early epochs as data augmentation: application to choroid plexuses

Arya Yazdan-Panah , Bruno Stankoff , Olivier Colliot
2024 SPIE Medical Imaging, Feb 2024, San Diego, United States. pp.44, ⟨10.1117/12.3006580⟩
Communication dans un congrès hal-04660077 v1
Image document

Border irregularity loss for automated segmentation of primary brain lymphomas on post-contrast MRI

Rosana El Jurdi , Lucia Nichelli , Agusti Alentorn , Ghislain Vaillant , Guanghui Fu et al.
SPIE Medical Imaging 2024, Feb 2024, San Diego, CA, United States
Communication dans un congrès hal-04454942 v1
Image document

Generating PET-derived maps of myelin content from clinical MRI using curricular discriminator training in generative adversarial networks

Théodore Soulier , Mariem Hamzaoui , Milena Sales Pitombeira , Daniele De Paula Faria , Arya Yazdan-Panah et al.
SPIE Medical Imaging, Feb 2024, San Diego, United States. ⟨10.1117/12.3004975⟩
Communication dans un congrès hal-04362506 v1
Image document

How precise are performance estimates for typical medical image segmentation tasks?

Rosana El Jurdi , Olivier Colliot
IEEE International Symposium on Biomedical Imaging (ISBI 2023), IEEE, Apr 2023, Cartagena de Indias, Colombia
Communication dans un congrès hal-04104891 v1
Image document

Transfer learning from synthetic to routine clinical data for motion artefact detection in brain T1-weighted MRI

Sophie Loizillon , Simona Bottani , Aurélien Maire , Sebastian Stroer , Didier Dormont et al.
SPIE Medical Imaging 2023: Image Processing, Feb 2023, San Diego, United States
Communication dans un congrès hal-03831746 v2
Image document

Unsupervised anomaly detection in 3D brain FDG PET: A benchmark of 17 VAE-based approaches

Ravi Hassanaly , Camille Brianceau , Olivier Colliot , Ninon Burgos
Deep Generative Models workshop at the 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Oct 2023, Vancouver, Canada
Communication dans un congrès hal-04185304 v1
Image document

From Nipype to Pydra: a Clinica story

Ghislain Vaillant , Nicolas Gensollen , Matthieu Joulot , Omar El-Rifai , Mauricio Diaz et al.
OHBM 2023 - Annual meeting of the Organization for Human Brain Mapping, Jul 2023, Montreal, Canada
Communication dans un congrès hal-04278898 v1
Image document

Semi-supervised Domain Adaptation for Automatic Quality Control of FLAIR MRIs in a Clinical Data Warehouse

Sophie Loizillon , Olivier Colliot , Lydia Chougar , Sebastian Stroer , Yannick Jacob et al.
DART 2023 - 5th MICCAI Workshop on Domain Adaptation and Representation Transfer, Oct 2023, Vancouver (BC), Canada. pp.84-93, ⟨10.1007/978-3-031-45857-6_9⟩
Communication dans un congrès hal-04273997 v1
Image document

Introducing Soft Topology Constraints in Deep Learning-based Segmentation using Projected Pooling Loss

Guanghui Fu , Rosana El Jurdi , Lydia Chougar , Didier Dormont , Romain Valabregue et al.
SPIE Medical Imaging 2023, Feb 2023, San Diego, United States
Communication dans un congrès hal-03832309 v2
Image document

Simulation-based evaluation framework for deep learning unsupervised anomaly detection on brain FDG PET

Ravi Hassanaly , Simona Bottani , Benoît Sauty , Olivier Colliot , Ninon Burgos
SPIE Medical Imaging, Feb 2023, San Diego, United States
Communication dans un congrès hal-03835015 v2
Image document

How can data augmentation improve attribution maps for disease subtype explainability?

Elina Thibeau-Sutre , Jelmer M Wolterink , Olivier Colliot , Ninon Burgos
SPIE Medical Imaging, Feb 2023, San Diego, United States
Communication dans un congrès hal-03966737 v1
Image document

Interpretable automatic detection of incomplete hippocampal inversions using anatomical criteria

Lisa J Hemforth , Claire Cury , Vincent Frouin , Sylvane Desrivières , Antoine Grigis et al.
SPIE Medical Imaging 2023, Feb 2023, San Diego (California), United States. pp.1-7, ⟨10.1117/12.2651427⟩
Communication dans un congrès hal-03994348 v1
Image document

Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont et al.
SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, United States. pp.576-582, ⟨10.1117/12.2608565⟩
Communication dans un congrès hal-03478798 v1
Image document

Advances in the Clinica software platform for clinical neuroimaging studies

Omar El Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier et al.
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-03728243 v1
Image document

Axial multi-layer perceptron architecture for automatic segmentation of choroid plexus in multiple sclerosis

Marius Schmidt-Mengin , Vito A. G. Ricigliano , Benedetta Bodini , Emanuele Morena , Annalisa Colombi et al.
SPIE Medical Imaging 2022, Feb 2022, San Diego, United States. ⟨10.1117/12.2612912⟩
Communication dans un congrès hal-03343735 v1
Image document

ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Olivier Colliot , Ninon Burgos
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-04279014 v1
Image document

MRI field strength predicts Alzheimer's disease: a case example of bias in the ADNI data set

Elina Thibeau-Sutre , Baptiste Couvy-Duchesne , Didier Dormont , Olivier Colliot , Ninon Burgos
ISBI 2022 - International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. ⟨10.1109/ISBI52829.2022.9761504⟩
Communication dans un congrès hal-03542213 v1
Image document

A multimodal variational autoencoder for estimating progression scores from imaging and microRNA data in rare neurodegenerative diseases

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Vincent Anquetil , Daisy Rinaldi et al.
SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, California, United States. pp.376-382, ⟨10.1117/12.2607250⟩
Communication dans un congrès hal-03576117 v1

Highlight on Computing disease progression scores using multimodal variational autoencoders trained with neuroimaging and microRNA data

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Vincent Anquetil , Daisy Rinaldi et al.
Jobim 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France
Communication dans un congrès hal-03877191 v1
Image document

Clinica: an open-source software platform for reproducible clinical neuroscience studies

Omar El-Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier et al.
MRI Together 2021 - A global workshop on Open Science and Reproducible MR Research, Dec 2021, Online, France
Communication dans un congrès hal-03513920 v1
Image document

Segmentation of new multiple sclerosis lesions on FLAIR MRI using online hard example mining

Marius Schmidt-Mengin , Arya Yazdan-Panah , Théodore Soulier , Mariem Hamzaoui , Nicholas Ayache et al.
MICCAI-MSSEG-2 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention - challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure, Sep 2021, Strasbourg, France
Communication dans un congrès hal-03826787 v1
Image document

Intensity based Regions Of Interest (ROIs) preselection followed by Convolutional Neuronal Network (CNN) based segmentation for new lesions detection in Multiple Sclerosis

Mariem Hamzaoui , Théodore Soulier , Arya Yazdan-Panah , Marius Schmidt- Mengin , Olivier Colliot et al.
MICCAI 2021 MSSEG2 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention - Challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure — MICCAI-MSSEG-2, Sep 2021, Strasbourg, France
Communication dans un congrès hal-03826791 v1
Image document

Association and prediction of phenotypic traits from neuroimaging data using a multi-component mixed model excluding the target vertex

Baptiste Couvy-Duchesne , Futao Zhang , Kathryn E Kemper , Julia Sidorenko , Naomi R Wray et al.
SPIE Medical Imaging 2021, Feb 2021, Virtual, United States. pp.10, ⟨10.1117/12.2581022⟩
Communication dans un congrès hal-03174495 v1
Image document

Hierarchical modeling of Alzheimer's disease progression from a large longitudinal MRI data set

Alexandre Bône , Benoît Martin , Maxime Louis , Olivier Colliot , Stanley Durrleman
VPH 2020 - Virtual Physiological Human 2020, Aug 2020, Paris / Virtual, France
Communication dans un congrès hal-02979176 v1
Image document

A step-wise criterion to determine target control centrality in the aging brain network

Giulia Bassignana , Olivier Colliot , Fabrizio de Vico Fallani
NetSci 2020 - International School and Conference on Network Science, Sep 2020, Rome / Virtual, Italy
Communication dans un congrès hal-03022301 v1
Image document

Linear Mixed Models Minimise False Positive Rate and Enhance Precision of Mass Univariate Vertex-Wise Analyse of Grey-Matter

Baptiste Couvy-Duchesne , Futao Zhang , Kathryn E Kemper , Julia Sidorenko , Naomi R. Wray et al.
ISBI 2020 - International Symposium on Biomedical Imaging, Apr 2020, Iowa City / Virtual, United States
Communication dans un congrès hal-02477130 v1
Image document

Multilevel Survival Analysis with Structured Penalties for Imaging Genetics data

Pascal Lu , Olivier Colliot
SPIE Medical Imaging Conference, Feb 2020, Houston, United States
Communication dans un congrès hal-02473825 v1
Image document

New longitudinal and deep learning pipelines in the Clinica software platform

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jorge Samper-González , Adam Wild et al.
OHBM 2020 - Annual meeting of the Organization for Human Brain Mapping, Jun 2020, Montreal / Virtual, Canada
Communication dans un congrès hal-02549242 v1
Image document

Visualization approach to assess the robustness of neural networks for medical image classification

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
SPIE Medical Imaging 2020, Feb 2020, Houston, United States. ⟨10.1117/12.2548952⟩
Communication dans un congrès hal-02370532 v3
Image document

Learning joint shape and appearance representations with metamorphic auto-encoders

Alexandre Bône , Paul Vernhet , Olivier Colliot , Stanley Durrleman​
MICCAI 2020 - 23rd International Conference on Image Computing and Computer Assisted Interventions, Oct 2020, Lima / Virtual, Peru
Communication dans un congrès hal-03136537 v1
Image document

Reproducible evaluation of methods for predicting progression to Alzheimer's disease from clinical and neuroimaging data

Jorge Samper-Gonzalez , Ninon Burgos , Simona Bottani , Marie-Odile Habert , Theodoros Evgeniou et al.
SPIE Medical Imaging 2019, Feb 2019, San Diego, United States. ⟨10.1117/12.2512430⟩
Communication dans un congrès hal-02025880 v2
Image document

Prediction of future cognitive scores and dementia onset in Mild Cognitive Impairment patients

Manon Ansart , Ninon Burgos , Olivier Colliot , Didier Dormont , Stanley Durrleman
OHBM 2019 - Organization for Human Brain Mapping Conference, Jun 2019, Rome, Italy
Communication dans un congrès hal-02098427 v2
Image document

Predicting Impulse Control Disorders in Parkinson's Disease: A Challenging Task

Johann Faouzi , Samir Bekadar , Olivier Colliot , Jean-Christophe Corvol
International Congress of Parkinson's Disease and Movement Disorders, Sep 2019, Nice, France
Communication dans un congrès hal-02315533 v1
Image document

Hierarchical modeling of Alzheimer's disease progression from a large longitudinal MRI data set

Alexandre Bône , Benoît Martin , Maxime Louis , Olivier Colliot , Stanley Durrleman
OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Roma, Italy
Communication dans un congrès hal-02090275 v1
Image document

Conciliation of process description and molecular interaction networks using logical properties of ontology

Vincent J. Henry , Giulia Bassignana , Violetta Zujovic , Fabrizio de Vico Fallani , Olivier Dameron et al.
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Communication dans un congrès hal-02301702 v1
Image document

Learning low-dimensional representations of shape data sets with diffeomorphic autoencoders

Alexandre Bône , Maxime Louis , Olivier Colliot , Stanley Durrleman
IPMI 2019 : Information Processing in Medical Imaging, Jun 2019, Hong-Kong, China
Communication dans un congrès hal-01963736 v2
Image document

Beware of feature selection bias! Example on Alzheimer's disease classification from diffusion MRI

Junhao Wen​ , Jorge Samper-González​ , Alexandre M Routier , Simona Bottani​ , Stanley Durrleman​ et al.
2019 OHBM Annual Meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Communication dans un congrès hal-02105134 v2
Image document

Deciphering the progression of PET alterations using surface-based spatiotemporal modeling

Igor Koval , Arnaud Marcoux , Ninon Burgos , Stéphanie Allassonnière , Olivier Colliot et al.
OHBM 2019 - Annual meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Communication dans un congrès hal-02134909 v1
Image document

Auto-encoding meshes of any topology with the current-splatting and exponentiation layers

Alexandre Bône , Olivier Colliot , Stanley Durrleman
Geometry Meets Deep Learning @ ICCV 2019, Oct 2019, Séoul, South Korea
Communication dans un congrès hal-02087586 v2
Image document

How serious is data leakage in deep learning studies on Alzheimer's disease classification?

Junhao Wen​ , Elina Thibeau--Sutre​ , Jorge Samper-González​ , Alexandre M Routier , Simona Bottani​ et al.
2019 OHBM Annual meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Communication dans un congrès hal-02105133 v2
Image document

Predicting progression to Alzheimer’s disease from clinical and imaging data: a reproducible study

Jorge Samper-Gonzalez , Ninon Burgos , Simona Bottani , Marie-Odile Habert , Theodoros Evgeniou et al.
OHBM 2019 - Organization for Human Brain Mapping Annual Meeting 2019, Jun 2019, Rome, Italy
Communication dans un congrès hal-02142315 v1

Target controllability in genetic networks of macrophage activation

Giulia Bassignana , Jennifer Fransson , Olivier Colliot , Violetta Zujovic , Fabrizio de Vico Fallani
Netsci 2019, May 2019, Burlington, United States
Communication dans un congrès hal-02314001 v1
Image document

New advances in the Clinica software platform for clinical neuroimaging studies

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jérémy Guillon , Jorge Samper-González et al.
OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨10.1016/j.neuroimage.2011.09.015⟩
Communication dans un congrès hal-02132147 v2
Image document

A pipeline for the analysis of 18F-FDG PET data on the cortical surface and its evaluation on ADNI

Arnaud Marcoux , Ninon Burgos , Anne Bertrand , Alexandre Routier , Junhao Wen et al.
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01757646 v1

Conciliation of medicine systems disease maps and other molecular interaction networks using logical properties of ontology

Vincent J. Henry , Giulia Bassignana , Violetta Zujovic , Fabrizio de Vico Fallani , Olivier Dameron et al.
Data Integration in the Life Sciences 5DILS 2018), Nov 2018, Hannover, Germany
Communication dans un congrès hal-02301626 v1
Image document

FLAIR MR Image Synthesis By Using 3D Fully Convolutional Networks for Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Olivier Colliot et al.
ISMRM-ESMRMB 2018 - Joint Annual Meeting, Jun 2018, Paris, France. pp.1-6
Communication dans un congrès hal-01723070 v1
Image document

Comparison of DTI Features for the Classification of Alzheimer's Disease: A Reproducible Study

Junhao Wen , Jorge Samper-Gonzalez , Simona Bottani , Alexandre Routier , Ninon Burgos et al.
OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01758206 v3
Image document

Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants

Alexandre Routier , Marie-Odile Habert , Anne Bertrand , Aurélie Kas , Pierre-Maxime David et al.
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapore, Singapore
Communication dans un congrès hal-01764289 v1
Image document

Three simple ideas for predicting progression to Alzheimer's disease

Jorge Samper-Gonzalez , Ninon Burgos , Simona Bottani , Marie-Odile Habert , Theodoros Evgeniou et al.
8th International Workshop on Pattern Recognition in Neuroimaging, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01891996 v1
Image document

Clinica: an open source software platform for reproducible clinical neuroscience studies

Alexandre Routier , Jérémy Guillon , Ninon Burgos , Jorge Samper-Gonzalez , Junhao Wen et al.
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapore, Singapore
Communication dans un congrès hal-01760658 v1
Image document

Identification of Driver Nodes in Genetic Networks Regulating Macrophage Activation

Giulia Bassignana , Jennifer Fransson , Olivier Colliot , Violetta Zujovic , Fabrizio de Vico Fallani
Conference on Complex Systems - CSS, Sep 2018, Thessaloniki, Greece
Communication dans un congrès hal-01967797 v1
Image document

Learning distributions of shape trajectories from longitudinal datasets: a hierarchical model on a manifold of diffeomorphisms

Alexandre Bône , Olivier Colliot , Stanley Durrleman
CVPR 2018 - Computer Vision and Pattern Recognition 2018, Jun 2018, Salt Lake City, United States
Communication dans un congrès hal-01744538 v3
Image document

Reproducible evaluation of Alzheimer's Disease classification from MRI and PET data

Jorge Samper-Gonzalez , Simona Bottani , Ninon Burgos , Sabrina Fontanella , Pascal Lu et al.
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01761666 v1
Image document

Using diffusion MRI for classification and prediction of Alzheimer's Disease: a reproducible study

Junhao Wen , Jorge Samper-Gonzalez , Simona Bottani , Alexandre Routier , Ninon Burgos et al.
AAIC 2018 - Alzheimer's Association International Conference, Jul 2018, Chicago, United States
Communication dans un congrès hal-01758167 v2

Identification of driver nodes in genetic networks regulating macrophage activation

Giulia Bassignana , Jennifer Fransson , Olivier Colliot , Violetta Zujovic , Fabrizio de Vico Fallani
International School and Conference on Network Science (Netsci) 2018, Jun 2018, Paris, France
Communication dans un congrès hal-02315609 v1
Image document

Integrating ontological representation and reasoning into a disease map: application to Alzheimer's disease

Vincent J. Henry , Ivan Moszer , Olivier Dameron , Marie-Claude Potier , Martin Hofmann-Apitius et al.
DMCM 2018 - 3rd Disease Maps Community Meeting, Jun 2018, Paris, France. pp.1-2
Communication dans un congrès hal-01873474 v1
Image document

Converting Alzheimer's disease map into a heavyweight ontology: a formal network to integrate data

Vincent J. Henry , Ivan Moszer , Olivier Dameron , Marie-Claude Potier , Martin Hofmann-Apitius et al.
DILS 2018 - 13th International Conference on Data Integration in the Life Sciences, Nov 2018, Hannover, Germany. pp.1-9
Communication dans un congrès hal-01917742 v1
Image document

NODDI Highlights Promising New Markers In Presymptomatic C9orf72 Carriers

Junhao Wen , Hui Zhang , Daniel Alexander , Stanley Durrleman , Alexandre Routier et al.
OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01758137 v1
Image document

Learning Myelin Content in Multiple Sclerosis from Multimodal MRI through Adversarial Training

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Nicholas Ayache et al.
MICCAI 2018 – 21st International Conference On Medical Image Computing & Computer Assisted Intervention, Sep 2018, Granada, Spain. ⟨10.1007/978-3-030-00931-1_59⟩
Communication dans un congrès hal-01810822 v1
Image document

Diagnosis of Alzheimer’s Disease Through Identification of Abnormality Patterns in FDG PET Data

Ninon Burgos , Jorge Samper-González , Anne Bertrand , Marie-Odile Habert , Sébastien Ourselin et al.
30th Annual Congress of the European Association of Nuclear Medicine (EANM), Oct 2017, Vienna, Austria. pp.253 - 254, ⟨10.1007/s00259-017-3822-1⟩
Communication dans un congrès hal-01632509 v1
Image document

Multi-modal analysis of genetically-related subjects using SIFT descriptors in brain MRI

Kuldeep Kumar , Laurent Chauvin , Mathew Toews , Olivier Colliot , Christian Desrosiers
Workshop on Computational Diffusion MRI, CDMRI 2017, MICCAI Workshop, Sep 2017, Quebec, Canada
Communication dans un congrès hal-01589647 v1
Image document

Prediction of the progression of subcortical brain structures in Alzheimer's disease from baseline

Alexandre Bône , Maxime Louis , Alexandre Routier , Jorge Samper , Michael Bacci et al.
6th MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01563587 v2
Image document

Selection of amyloid positive pre-symptomatic subjects using automatic analysis of neuropsychological and MRI data for cost effective inclusion procedures in clinical trials

Manon Ansart , Stéphane Epelbaum , Olivier Colliot , Didier Dormont , Bruno Dubois et al.
Clinical Trials for Alzheimer's Disease, Nov 2017, Boston, United States. pp.295
Communication dans un congrès hal-02098434 v2
Image document

Multilevel Modeling with Structured Penalties for Classification from Imaging Genetics data

Pascal Lu , Olivier Colliot
3rd MICCAI Workshop on Imaging Genetics (MICGen 2017), Sep 2017, Québec City, Canada. pp.230-240
Communication dans un congrès hal-01578441 v1
Image document

Prediction of amyloidosis from neuropsychological and MRI data for cost effective inclusion of pre-symptomatic subjects in clinical trials

Manon Ansart , Stéphane Epelbaum , Geoffroy Gagliardi , Olivier Colliot , Didier Dormont et al.
Multimodal Learning for Clinical Decision Support, Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01578422 v1
Image document

Étude quantitative des anomalies de signal flair de la substance blanche dans les pathologies neurodégénératives

Sébastian Ströer , Ludovic Fillon , Stéphane Epelbaum , Marc Teichmann , Agnès Michon et al.
SFNR 2017 - 44ème Congrès de la Société Française de Neuroradiologie, Mar 2017, Paris, France. pp.1, ⟨10.1016/j.neurad.2017.01.011⟩
Communication dans un congrès hal-01562645 v1
Image document

Individual Analysis of Molecular Brain Imaging Data Through Automatic Identification of Abnormality Patterns

Ninon Burgos , Jorge Samper-González , Anne Bertrand , Marie-Odile Habert , Sébastien Ourselin et al.
Computational Methods for Molecular Imaging - [MICCAI 2017 Satellite Workshop], Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01567343 v1
Image document

Statistical learning of spatiotemporal patterns from longitudinal manifold-valued networks

Igor Koval , Jean-Baptiste Schiratti , Alexandre Routier , Michael Bacci , Olivier Colliot et al.
Medical Image Computing and Computer Assisted Intervention, Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01540828 v1
Image document

White Matter Fiber Segmentation Using Functional Varifolds

Kuldeep Kumar , Pietro Gori , Benjamin Charlier , Stanley Durrleman , Olivier Colliot et al.
MFCA 2017 - 6th MICCAI workshop on Mathematical Foundations of Computational Anatomy, Sep 2017, Québec, Canada. pp.92-100
Communication dans un congrès hal-01589649 v1

Accuracy of MRI classification algorithms in a tertiary memory center clinical routine cohort

Alexandre Morin , Jorge Samper-Gonzales , Anne Bertrand , Enrica Cavedo , Simone Lista et al.
AAIC 2017 - Alzheimer's Association International Conference, Jul 2017, London, United Kingdom. pp.P772-P774, ⟨10.1016/j.jalz.2017.06.1034⟩
Communication dans un congrès hal-02192444 v1
Image document

Early Diagnosis of Alzheimer’s Disease Using Subject-Specific Models of FDG-PET Data

Ninon Burgos , Jorge Samper-González , Jorge M. Cardoso , Stanley Durrleman , Sébastien Ourselin et al.
AAIC 2017 - Alzheimer's Association International Conference, Jul 2017, London, United Kingdom. pp.1-2, ⟨10.1016/j.jalz.2017.06.1618⟩
Communication dans un congrès hal-01621383 v1
Image document

Yet Another ADNI Machine Learning Paper? Paving The Way Towards Fully-reproducible Research on Classification of Alzheimer's Disease

Jorge Samper-Gonzalez , Ninon Burgos , Sabrina Fontanella , Hugo Bertin , Marie-Odile Habert et al.
Machine Learning in Medical Imaging 2017, Sep 2017, Quebec City, Canada. pp.8
Communication dans un congrès hal-01578479 v1

The INSIGHT cohort: baseline analysis of structural MR imaging in asymptomatic subjects at risk for Alzheimer's disease

Anne Bertrand , Stephane Epelbaum , Marie-Odile Habert , Harald Hampel , Hovagim Bakardjian et al.
AAIC, Jul 2016, Toronto, Canada. ⟨10.1016/j.jalz.2016.06.612⟩
Communication dans un congrès hal-01439571 v1

Suspected non-alzheimer disease pathophysiology (SNAP) categorization in the insight cohort

Stephane Epelbaum , Anne Bertrand , Aline Mendes , Marcel Levy , Geoffroy Gagliardi et al.
AAIC, 2016, Toronto, Canada. pp.P1073 - P1074, ⟨10.1016/j.jalz.2016.06.2246⟩
Communication dans un congrès hal-01562646 v1
Image document

Mixed-effects model for the spatiotemporal analysis of longitudinal manifold-valued data

Jean-Baptiste Schiratti , Stéphanie Allassonnière , Olivier Colliot , Stanley Durrleman
5th MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Oct 2015, Munich, Germany
Communication dans un congrès hal-01245905 v1
Image document

Learning spatiotemporal trajectories from manifold-valued longitudinal data

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Olivier Colliot , Stanley Durrleman
Neural Information Processing Systems, Dec 2015, Montréal, Canada
Communication dans un congrès hal-01163373 v3

Imaging of hippocampal inner structure at 7T: robust in-vivo acquisition protocol

Linda Marrakchi-Kacem , Alexandre Vignaud , Julien Sein , Johanne Germain , Stéphane Epelbaum et al.
Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States
Communication dans un congrès hal-01188843 v1
Image document

Multi-template approaches for segmenting the hippocampus: the case of the SACHA software

Ludovic Fillon , Olivier Colliot , Dominique Hasboun , Bruno Dubois , Didier Dormont et al.
Organization for Human Brain Mapping (OHBM), Jun 2015, Honolulu, United States. pp.5
Communication dans un congrès hal-01188794 v1

Segmentation of hippocampal inner structure using 7T in-vivo MRI: a robust anatomical protocol

Marie Chupin , Johanne Germain , Linda Marrakchi-Kacem , Emilie Gerardin , Claire Boutet et al.
Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States
Communication dans un congrès hal-01188838 v1
Image document

Unified analysis of shape and structural connectivity of neural pathways

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Alexandre Routier et al.
Organisation for Human Brain Mapping, 2015, Honolulu, United States
Communication dans un congrès hal-01187461 v1
Image document

A mixed-effects model with time reparametrization for longitudinal univariate manifold-valued data

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Alexandre Routier , Olivier Colliot , Stanley Durrleman
IPMI - Information Processing in Medical Imaging , Sebastien Ourselin, Daniel C. Alexander, Carl-Fredrik Westin, M. Jorge Cardoso, Jun 2015, Sleat, Isle of Skye, United Kingdom. pp.564-575
Communication dans un congrès hal-01163213 v1

Statistical shape analysis of large datasets using diffeomorphic iterative centroids

Claire Cury , Joan Glaunés , Roberto Toro , Gunter D Schumann , Vincent Frouin et al.
Human Brain Mapping - 2015, Jun 2015, Honolulu, United States
Communication dans un congrès hal-01212226 v1

Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI

Emilie Gérardin , Joan Alexis Glaunès , Marie Chupin , Ana B. Graciano Fouquier , Kevin Roussel et al.
Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States
Communication dans un congrès hal-01188833 v1
Image document

Characterization of Incomplete Hippocampal Inversions in a large dataset of young healthy subjects

Claire Cury , Roberto Toro , Fanny Cohen , Amel Mhaya , Dominique Hasboun et al.
Human Brain Mapping - 2015, Jun 2015, Honolulu, United States
Communication dans un congrès hal-01212219 v1
Image document

Joint Morphometry of Fiber Tracts and Gray Matter structures using Double Diffeomorphisms

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Alexandre Routier et al.
IPMI - Information Processing in Medical Imaging, Jun 2015, Isle of Skye, United Kingdom. pp.275-287, ⟨10.1007/978-3-319-19992-4_21⟩
Communication dans un congrès hal-01142628 v1
Image document

A Prototype Representation to Approximate White Matter Bundles with Weighted Currents

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Fabrizio de Vico Fallani et al.
MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2014, Boston, United States
Communication dans un congrès hal-01010702 v1

Slab registration as a first step towards hippocampus subparts high resolution imaging at 7T

Linda Marrakchi-Kacem , Alexandre Vignaud , Johanne Germain , Julien Sein , Thomas R Henry et al.
ISMRM 2014 - Annual Meeting of the International Society for Magnetic Resonance in Medicine, May 2014, Milan, Italy
Communication dans un congrès hal-01114137 v1

Genetic Frontotemporal Dementia with TDP-43 Inclusions:Distinct Radiological Phenotypes between Patients with PGRN and C9ORF72 Mutations

Anne Bertrand , Fatima Ameur , Paola Caroppo , Didier Dormont , Alexis Brice et al.
RSNA, Nov 2014, Chicago, United States
Communication dans un congrès hal-01439623 v1

Multimodal neuroimaging study in presymptomatic GRN mutations carriers

Paola Caroppo , Marie-Odile Habert , Stanley Durrleman , Hugo Bertin , Alexandre Routier et al.
9th International Conference on Frontotemporal Dementias (ICFTD), Oct 2014, Vancouver, Canada
Communication dans un congrès hal-01114134 v1
Image document

Evaluation of morphometric descriptors of deep brain structures for the automatic classification of patients with Alzheimer’s disease, mild cognitive impairment and elderly controls

Alexandre Routier , Pietro Gori , Ana B. Graciano Fouquier , Sophie Lecomte , Olivier Colliot et al.
MICCAI Workshop, Sep 2014, Cambridge, United States. pp.8
Communication dans un congrès hal-01099081 v1

Incidence and characterization of supratentorial FLAIR hyperintenstities in patients with sporadic and genetic frontotemporal dementia

Anne Bertrand , Fatima Ameur , Paola Caroppo , Didier Dormont , Alexis Brice et al.
AAIC 2014 - Alzheimer’s Association International Conference, Jul 2014, Copenhagen, Denmark
Communication dans un congrès hal-01114135 v1

Improved accuracy of the diagnosis of early Alzheimer’s disease using combined measures of hippocampal volume and sulcal morphology

Lorraine Hamelin , Leonardo Cruz de Souza , Fabian Corlier , Hélène Corne , Marie Chupin et al.
AAN 2014 - Annual Meeting of the American Academy of Neurology, Apr 2014, Philadelphia, United States
Communication dans un congrès hal-01114138 v1
Image document

Fast Template-based Shape Analysis using Diffeomorphic Iterative Centroid

Claire Cury , Joan Alexis Glaunès , Marie Chupin , Olivier Colliot
MIUA 2014 - Medical Image Understanding and Analysis 2014, Jul 2014, Egham, United Kingdom. pp.39-44
Communication dans un congrès hal-01050590 v1
Image document

Towards joint morphometry of white matter tracts and gray matter surfaces

Pietro Gori , Olivier Colliot , Yulia Worbe , Linda Marrakchi-Kacem , Sophie Lecomte et al.
Human Brain Mapping, 2013, Seattle, United States
Communication dans un congrès hal-00816138 v1

Template Estimation for Large Database: A Diffeomorphic Iterative Centroid Method Using Currents

Claire Cury , Joan Alexis Glaunès , Olivier Colliot
GSI 2013 - First International Conference Geometric Science of Information, Aug 2013, Paris, France. pp.103-111, ⟨10.1007/978-3-642-40020-9_10⟩
Communication dans un congrès istex hal-00857440 v1
Image document

Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes

Pietro Gori , Olivier Colliot , Yulia Worbe , Linda Marrakchi-Kacem , Sophie Lecomte et al.
MICCAI 2013 : Medical Image Computing and Computer Assisted Intervention, Sep 2013, Nagoya, Japan. pp.267-274, ⟨10.1007/978-3-642-40811-3_34⟩
Communication dans un congrès hal-01188791 v1

Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability

Thomas Samaille , Olivier Colliot , Rémi Cuingnet , Eric Jouvent , Hugues Chabriat et al.
SPIE 2012 - Symposium on Medical Imaging, Feb 2012, San Diego, United States. pp.1-9, ⟨10.1117/12.910268⟩
Communication dans un congrès hal-00817381 v1

Segmentation of white matter hyperintensities: a comparison of automatic methods on multicentre data

Ludovic Fillon , Thomas Samaille , Eric Jouvent , Hugues Chabriat , Didier Dormont et al.
OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Beijing, China
Communication dans un congrès hal-00817392 v1
Image document

Modelling morphological variability of the hippocampus using manifold learning and large deformations

Claire Cury , Joan Glaunès , Emilie Gerardin , Marie Chupin , Olivier Colliot
OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Pekin, China
Communication dans un congrès hal-00816100 v1

Anatomical Regularization on Statistical Manifolds for the Classification of Patients with Alzheimer's Disease

R. Cuingnet , Joan Alexis Glaunès , Marie Chupin , Habib Benali , Olivier Colliot et al.
MICCAI Workshop on Machine Learning in Medical Imaging, Sep 2011, Toronto, Canada. pp.201-208, ⟨10.1007/978-3-642-24319-6_25⟩
Communication dans un congrès istex hal-00712091 v1
Image document

T 1 mapping, AIF and Pharmacokinetic Parameter Extraction from Dynamic Contrast Enhancement MRI Data

Gilad Liberman , Yoram Louzoun , Olivier Colliot , Dafna Ben Bashat
MICCAI Workshop on Multimodal Brain Image Analysis MBIA 2011, 2011, Toronto, Canada. pp.76 - 83, ⟨10.1007/978-3-642-24446-9_10⟩
Communication dans un congrès hal-01439120 v1

Automatic segmentation of age-related white matter changes on flair images: method and multicentre validation

Thomas Samaille , Olivier Colliot , Didier Dormont , Marie Chupin
ISBI 2011 - 8th IEEE International Symposium on Biomedical Imaging: from Nano to Macro, Mar 2011, Chicago, United States. pp.2014 - 2017, ⟨10.1109/ISBI.2011.5872807⟩
Communication dans un congrès hal-00817386 v1
Image document

Spatial and anatomical regularization of SVM for brain image analysis

Rémi Cuingnet , Marie Chupin , Habib Benali , Olivier Colliot
Neural Information Processing Systems NIPS 2010, 2010, Vancouver, Canada
Communication dans un congrès hal-01439123 v1

Automated segmentation of white matter lesions using FLAIR images.

Thomas Samaille , Olivier Colliot , Didier Dormont , Marie Chupin
OHBM 2010 - 16th International Conference on Functional Mapping of the Human Brain, Jun 2010, Barcelona, Spain
Communication dans un congrès hal-00817395 v1
Image document

Spatially Regularized SVM for the Detection of Brain Areas Associated with Stroke Outcome

Rémi Cuingnet , Charlotte Rosso , Stéphane Lehéricy , Didier Dormont , Habib Benali et al.
Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010, 2010, Beijing, China. pp.316 - 323, ⟨10.1007/978-3-642-15705-9_39⟩
Communication dans un congrès hal-01439126 v1

DISCO: a coherent diffeomorphic framework for brain registration under exhaustive sulcal constraints

Guillaume Auzias , Joan Alexis Glaunès , Olivier Colliot , Perrot Matthieu , Jean-François Mangin et al.
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, Sep 2009, United Kingdom. pp.730-738
Communication dans un congrès hal-00534432 v1

Multi-Scale Diffeomorphic Cortical Registration Under Manifold Sulcal Constraints

Guillaume Auzias , Joan Alexis Glaunès , Arnaud Cachia , Pascal Cathier , Eric Bardinet et al.
2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, France. pp.1127-1130
Communication dans un congrès hal-00534433 v1

Improved segmentation of focal cortical dysplasia lesions on MRI using expansion towards cortical boundaries

Olivier Colliot , Tommaso Mansi , P. Besson , N. Bernasconi , A. Bernasconi
3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro (ISBI), 2006, Arlington, VA, USA, United States. pp.323-326
Communication dans un congrès inria-00615584 v1

Segmentation of Focal Cortical Dysplasia Lesions Using a Feature-Based Level Set

Olivier Colliot , Tommaso Mansi , N. Bernasconi , V. Naessens , D. Klironomos et al.
Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'05), 2005, Palm Springs (CA), USA, United States. pp.375-382, ⟨10.1007/1156646547⟩
Communication dans un congrès inria-00616015 v1

A level set driven by MR features of focal cortical dysplasia for lesion segmentation

Olivier Colliot , Tommaso Mansi , N. Bernasconi , V. Naessens , D. Klironomos et al.
Medical Image Understanding and Analysis (MIUA), 2005, no address, United States. pp.239-242
Communication dans un congrès inria-00616016 v1
Image document

Integration of fuzzy structural information in deformable models

Olivier Colliot , Oscar Camara-Rey , Isabelle Bloch
Information Processing and Management of Uncertainty IPMU 2004, 2004, Perugia, Italy
Communication dans un congrès hal-01930357 v1
Image document

3D nonlinear PET-CT image registration algorithm with constrained Free-Form Deformations

Oscar Camara , Olivier Colliot , Gaspar Delso , Isabelle Bloch
3rd IASTED International Conference on Visualization, Imaging, and Image Processing (VIIP 2003), 2003, Benalmadena, Spain
Communication dans un congrès hal-01930355 v1
Image document

Characterization of approximate plane symmetries for 3D fuzzy objects

Olivier Colliot , Isabelle Bloch , Alexander V Tuzikov
9th International Conference on Information Processing and Management of Uncertainty IPMU 2002), Jul 2002, Annecy, France. pp.1749-1756
Communication dans un congrès hal-01930352 v1
Image document

Brain symmetry plane computation in MR images using inertia axes and optimization

Alexander V Tuzikov , Olivier Colliot , Isabelle Bloch
16th International Conference on Pattern Recognition, Aug 2002, Québec, Canada. ⟨10.1109/ICPR.2002.1044783⟩
Communication dans un congrès hal-01930349 v1
Image document

ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont et al.
3IA Doctoral Workshop, Nov 2021, Toulouse, France
Poster de conférence hal-03423072 v2
Image document

Identification of unlabeled latent subtypes with saliency maps

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
ICM welcome days, Oct 2020, Paris (online), France
Poster de conférence hal-03365788 v1
Image document

Visualization approach to assess the robustness of neural networks for medical image classification

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
ICM days 2019, Jan 2020, Louan, France
Poster de conférence hal-03365775 v1
Image document

How serious is data leakage in deep learning studies on Alzheimer’s disease classification?

Junhao Wen , Elina Thibeau-Sutre , Jorge Samper-Gonzalez , Alexandre M Routier , Simona Bottani et al.
Organization for Human Brain Mapping (OHBM), Jun 2019, Roma, Italy
Poster de conférence hal-03365742 v1
Image document

A log-logistic survival model from multimodal data for prediction of Alzheimer's Disease

Pascal Lu , Olivier Colliot
SAfJR 2019 - Survival Analysis for Junior Researchers, Apr 2019, Copenhague, Denmark
Poster de conférence hal-02430943 v1
Image document

On the genetic bases of incomplete hippocampal inversion: a genome-wide association study

Claire Cury , Marzia A Scelzi , Roberto Toro , Vincent Frouin , Eric Artiges et al.
OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1
Poster de conférence inserm-02074616 v1
Image document

Building disease progression models from longitudinal biomarkers

Clémentine Fourrier , Igor Koval , Simona Bottani , Olivier Colliot , Stanley M Durrleman
5th Annual Human Brain Project Summit, Oct 2017, Glasgow, United Kingdom
Poster de conférence hal-02466386 v1
Image document

Learning spatio-temporal trajectories from manifold-valued longitudinal data

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Olivier Colliot , Stanley Durrleman
Neural Information Processing Systems, Dec 2015, Montréal, Canada. , Advances in Neural Information Processing Systems
Poster de conférence hal-01245909 v1
Image document

Machine Learning for Brain Disorders

Olivier Colliot
Olivier Colliot. Springer, 197, 2023, Neuromethods, 978-1-0716-3195-9. ⟨10.1007/978-1-0716-3195-9⟩
Ouvrages hal-04225627 v1
Image document

Reproducibility in medical image computing: what is it and how is it assessed?

Olivier Colliot , Elina Thibeau-Sutre , Camille Brianceau , Ninon Burgos
Marco Lorenzi and Maria Zuluaga. Trustworthy AI in Medical Imaging, Elsevier, pp.177-204, 2024, MICCAI Book Series, Elsevier, ⟨10.1016/B978-0-44-323761-4.00018-3⟩
Chapitre d'ouvrage hal-04895884 v1
Image document

Evaluating machine learning models and their diagnostic value

Gaël Varoquaux , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03682454 v5
Image document

Machine learning for Parkinson’s disease and related disorders

Johann Faouzi , Olivier Colliot , Jean-Christophe Corvol
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_26⟩
Chapitre d'ouvrage hal-03830073 v2
Image document

Classic machine learning methods

Johann Faouzi , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03830094 v4
Image document

A non-technical introduction to machine learning

Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03957125 v3
Image document

Deep learning: basics and convolutional neural networks (CNN)

Maria Vakalopoulou , Stergios Christodoulidis , Ninon Burgos , Olivier Colliot , Vincent Lepetit
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_3⟩
Chapitre d'ouvrage hal-03957224 v2
Image document

Reproducibility in machine learning for medical imaging

Olivier Colliot , Elina Thibeau-Sutre , Ninon Burgos
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03957240 v2
Image document

Interpretability of Machine Learning Methods Applied to Neuroimaging

Elina Thibeau-Sutre , Sasha Collin , Ninon Burgos , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_22⟩
Chapitre d'ouvrage hal-03615163 v2
Image document

Biomarqueurs IRM de la maladie d’Alzheimer : apport du traitement des images

Olivier Colliot
Tillement Jean-Paul; Hauw Jean-Jacques; Papadopoulos Vassilios. Vieillissement et démences : un défi médical, scientifique et socio-économique, Lavoisier, pp.25-37, 2014, Rapports de l’Académie Nationale de Médecine
Chapitre d'ouvrage hal-01098841 v1
Image document

Diffeomorphic Iterative Centroid Methods for Template Estimation on Large Datasets

Claire Cury , Joan Alexis Glaunès , Olivier Colliot
Frank Nielsen. Geometric Theory of Information, Chapter 10, Springer, pp.273-299, 2014, ⟨10.1007/978-3-319-05317-2_10⟩
Chapitre d'ouvrage hal-00939326 v1