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Plankton biogeography in the 21st century and impacts of climate change: advances through genomics
Paul Frémont
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Marion Gehlen
,
Olivier Jaillon
Article dans une revue
hal-04026636
v1
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Climate genomics—Geoscientists, ecologists, and geneticists must reinforce their collaborations to confront climate change
Jilda Alicia Caccavo
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Paul Frémont
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Olivier Jaillon
,
Marion Gehlen
Article dans une revue
hal-04196622
v1
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Mirusviruses link herpesviruses to giant viruses
Morgan Gaïa
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Lingjie Meng
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Eric Pelletier
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Patrick Forterre
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Chiara Vanni
et al.
Article dans une revue
pasteur-04085734
v1
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Pan-Arctic plankton community structure and its global connectivity
Federico M Ibarbalz
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Nicolas Henry
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Frédéric Mahé
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Mathieu Ardyna
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Adriana Zingone
et al.
Article dans une revue
hal-04267640
v1
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Computing marine plankton connectivity under thermal constraints
Darshika Manral
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Doroteaciro Iovino
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Olivier Jaillon
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Simona Masina
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Hugo Sarmento
et al.
Article dans une revue
cea-04286502
v1
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Ocean-wide comparisons of mesopelagic planktonic community structures
Janaina Rigonato
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Marko Budinich
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Alejandro Murillo
,
Manoela Brandão
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Juan Pierella Karlusich
et al.
Article dans une revue
hal-04184772
v1
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Predicting global distributions of eukaryotic plankton communities from satellite data
Hiroto Kaneko
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Hisashi Endo
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Nicolas Henry
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Cédric Berney
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Frédéric Mahé
et al.
Article dans une revue
hal-04394784
v1
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Giant viruses encode actin-related proteins
Violette da Cunha
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Morgan Gaia
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Hiroyuki Ogata
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Olivier Jaillon
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Tom O Delmont
et al.
Article dans une revue
cea-04281384
v1
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Restructuring of plankton genomic biogeography in the surface ocean under climate change
Paul Frémont
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Marion Gehlen
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Mathieu Vrac
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Jade Leconte
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Tom O. Delmont
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Article dans une revue
insu-03659872
v1
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Tom Delmont
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Morgan Gaia
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Damien Hinsinger
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Paul Frémont
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Chiara Vanni
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Article dans une revue
hal-03872935
v2
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Genomic adaptation of the picoeukaryote $Pelagomonas\ calceolata$ to iron-poor oceans revealed by a chromosome-scale genome sequence
Nina Guérin
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Marta Ciccarella
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Elisa Flamant
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Paul Frémont
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Sophie Mangenot
et al.
Article dans une revue
cea-03791710
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Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
Ahmed Zayed
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James Wainaina
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Guillermo Dominguez-Huerta
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Eric Pelletier
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Jiarong Guo
et al.
Article dans une revue
hal-03872940
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Daniel Richter
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Romain Watteaux
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Thomas Vannier
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Jade Leconte
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Paul Frémont
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Article dans une revue
hal-02399723
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Environmental vulnerability of the global ocean epipelagic plankton community interactome
Samuel Chaffron
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Erwan Delage
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Marko Budinich
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Damien Vintache
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Nicolas Henry
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Article dans une revue
hal-03443359
v2
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Comparative genomics reveals new functional insights in uncultured MAST species
Aurelie Labarre
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David López-Escardó
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Francisco Latorre
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Guy Leonard
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François Bucchini
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Article dans une revue
hal-04288985
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Niche adaptation promoted the evolutionary diversification of tiny ocean predators
Francisco Latorre
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Ina M. Deutschmann
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Aurélie Labarre
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Aleix Obiol
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Anders K. Krabberod
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Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (25), pp.e2020955118. ⟨10.1073/pnas.2020955118⟩
Article dans une revue
hal-04288986
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Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
Hiroto Kaneko
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Romain Blanc-Mathieu
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Hisashi Endo
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Samuel Chaffron
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Tom Delmont
et al.
Article dans une revue
hal-03097258
v3
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Genome Resolved Biogeography of Mamiellales
Jade Leconte
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L. Felipe Felipe Benites
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Thomas Vannier
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Patrick Wincker
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Gwenael Piganeau
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Article dans une revue
hal-02505108
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Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal
Shinya Sato
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Deepak Nanjappa
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Richard G Dorrell
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Fabio Rocha Jimenez Vieira
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Elena Kazamia
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Article dans une revue
inserm-02886223
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Tara Oceans: towards global ocean ecosystems biology
Shinichi Sunagawa
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Silvia Acinas
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Peer Bork
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Chris Bowler
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Silvia Acinas
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Article dans une revue
hal-04394809
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Marine DNA viral macro- and microdiversity from Pole to Pole
Ann Gregory
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Ahmed Zayed
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Nádia Conceição-Neto
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Ben Temperton
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Ben Bolduc
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Article dans une revue
hal-02387010
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Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics
Yaiza M. Castillo
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Jean-François Mangot
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Luiz Felipe Benites
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Ramiro Logares
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Megumi Kuronishi
et al.
Article dans une revue
cea-04307624
v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Luigi Caputi
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Quentin Carradec
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Damien Eveillard
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Amos Kirilovsky
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Eric Pelletier
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Article dans une revue
hal-02999805
v1
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Global Trends in Marine Plankton Diversity across Kingdoms of Life
Federico Ibarbalz
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Nicolas Henry
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Manoela Brandão
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Severine Martini
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Greta Busseni
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Article dans une revue
hal-03094778
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Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems
M. E Sieracki
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N. J Poulton
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O. Jaillon
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P. Wincker
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Colomban de Vargas
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Article dans une revue
hal-02113815
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Elucidation of codon usage signatures across the domains of life
Eva Maria Novoa
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Irwin Jungreis
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Olivier Jaillon
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Manolis Kellis
Article dans une revue
cea-04309465
v1
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A global ocean atlas of eukaryotic genes
Quentin Carradec
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Eric Pelletier
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Corinne da Silva
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Adriana A. Alberti
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Yoann Seeleuthner
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Article dans une revue
cea-01874711
v1
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Discovering Millions of Plankton Genomic Markers from the Atlantic Ocean and the Mediterranean Sea
Majda Arif
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Jérémy Gauthier
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Kevin Sugier
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Daniele Iudicone
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Olivier Jaillon
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Article dans une revue
hal-01987200
v1
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Yoann Seeleuthner
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Samuel Mondy
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Vincent Lombard
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Quentin Carradec
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Eric Pelletier
et al.
Article dans une revue
hal-01771839
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Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
Adriana A. Alberti
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Julie Poulain
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Stefan Engelen
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Karine Labadie
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Sarah Romac
et al.
Article dans une revue
hal-01771844
v1
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A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
Roberto Arrigoni
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Benoît Vacherie
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Francesca Benzoni
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Fabrizio Stefani
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Eric Karsenti
et al.
Article dans une revue
hal-03971503
v1
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Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Jean-François Mangot
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Ramiro Logares
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Pablo Sánchez
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Fran Latorre
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Yoann 6 Seeleuthner
et al.
Article dans une revue
hal-01466618
v1
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Survey of the green picoalga Bathycoccus genomes in the global ocean
Thomas Vannier
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Jade Leconte
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Yoann Seeleuthner
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Samuel Mondy
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Eric Pelletier
et al.
Article dans une revue
hal-01410203
v1
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Eukaryotic plankton diversity in the sunlit ocean
Noan Le Bescot
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Ian Probert
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Margaux Carmichael
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Julie Poulain
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Sarah Romac
et al.
Article dans une revue
hal-01253979
v1
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Open science resources for the discovery and analysis of Tara Oceans data
Stéphane Pesant
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Fabrice Not
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Marc Picheral
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Stefanie Kandels-Lewis
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Noan Le Bescot
et al.
Article dans une revue
hal-01253984
v1
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Magali Lescot
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Pascal Hingamp
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Kenji K Kojima
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Emilie Villar
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Sarah Romac
et al.
Article dans une revue
hal-01258212
v1
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Structure and function of the global ocean microbiome
Shinichi Sunagawa
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Luis Pedro Coelho
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Samuel Chaffron
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Jens Roat Kultima
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Karine Labadie
et al.
Article dans une revue
hal-01233742
v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
Ramon Massana
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Angélique Gobet
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Stéphane Audic
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David Bass
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Lucie Bittner
et al.
Article dans une revue
hal-01191731
v1
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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
G Albert Wu
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Simon Prochnik
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Jerry Jenkins
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Jérôme Salse
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Uffe Hellsten
et al.
Article dans une revue
hal-02285484
v1
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Ramiro Logares
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Shinichi Sunagawa
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Guillem Salazar
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Francisco M. Cornejo-Castillo
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Isabel Ferrera
et al.
Article dans une revue
istex
hal-01258219
v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.
Camille Berthelot
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Frédéric Brunet
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Domitille Chalopin
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Amélie Juanchich
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Maria Bernard
et al.
Article dans une revue
hal-01193812
v1
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Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Pascal Hingamp
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Nigel Grimsley
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Silvia G Acinas
,
Camille Clerissi
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Lucie Subirana
et al.
Article dans une revue
hal-01258223
v1
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.
Angélique d'Hont
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France Denoeud
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Jean-Marc Aury
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Franc-Christophe Baurens
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Françoise Carreel
et al.
Article dans une revue
hal-00855582
v1
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Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.
France Denoeud
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Michaël Roussel
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Benjamin Noel
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Ivan Wawrzyniak
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Corinne da Silva
et al.
Article dans une revue
inserm-00617212
v1
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A Holistic Approach to Marine Eco-Systems Biology
Eric Karsenti
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Silvia G. Acinas
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Peer Bork
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Chris Bowler
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Colomban de Vargas
et al.
Article dans une revue
hal-01893669
v1
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Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
France Denoeud
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Simon Henriet
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Sutada Mungpakdee
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Jean-Marc Aury
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Corinne da Silva
et al.
Article dans une revue
halsde-00544648
v1
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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
Francis Martin
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Annegret Kohler
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Claude Murat
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Raffaella Balestrini
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Pedro M Coutinho
et al.
Article dans une revue
cea-00907731
v1
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Annotating genomes with massive-scale RNA sequencing
France Denoeud
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Jean-Marc Aury
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Corinne da Silva
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Benjamin Noel
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Odile Rogier
et al.
Article dans une revue
hal-02664963
v1
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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.
L. Duret
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Jean Cohen
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Claire Jubin
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Philippe Dessen
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Jean-François Goût
et al.
Article dans une revue
hal-00282468
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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
L. Duret
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J. Cohen
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C. Jubin
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P. Dessen
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J.-F. Gout
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Article dans une revue
hal-00428190
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Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
Pierre Abad
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Jerome Gouzy
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Jean-Marc Aury
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Philippe Castagnone-Sereno
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Etienne Danchin
et al.
Article dans une revue
hal-01189285
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The genome sequence of the model ascomycete fungus Podospora anserina
Eric Espagne
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Olivier Lespinet
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Fabienne Malagnac
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Corinne da Silva
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Olivier Jaillon
et al.
Article dans une revue
hal-04011226
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Translational control of intron splicing in eukaryotes
Olivier Jaillon
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Khaled Bouhouche
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Jean-François Gout
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Jean-Marc Aury
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Benjamin Noel
et al.
Article dans une revue
cea-00945555
v1
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The genome sequence of the model ascomycete fungus Podospora anserina.
Eric Espagne
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Olivier Lespinet
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Fabienne Malagnac
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Corinne da Silva
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Olivier Jaillon
et al.
Article dans une revue
hal-00286300
v1
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Olivier Jaillon
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Jean-Marc Aury
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Benjamin Noel
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Alberto Policriti
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Christian Clepet
et al.
Article dans une revue
inria-00180136
v1
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Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia
Jean-Marc Aury
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Olivier Jaillon
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* Laurent Duret
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Benjamin Noel
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Claire Jubin
et al.
Article dans une revue
hal-00090904
v1
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Gene loss and evolutionary rates following whole genome duplication in Teleost fishes
F. Brunet
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Roest Crollius H.
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M. Paris
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Aury Jm.
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Patricia Gibert
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Molecular Biology and Evolution, 2006, 23, pp.1808-1816
Article dans une revue
hal-00093159
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Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
Frédéric Brunet
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Hugues Roest Crollius
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Mathilde Paris
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Jean-Marc Aury
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Patricia Gibert
et al.
Article dans une revue
hal-02660787
v1
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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.
Jean-Marc Aury
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Olivier Jaillon
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L. Duret
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Benjamin Noel
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Claire Jubin
et al.
Article dans une revue
hal-00132091
v1
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Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation
Karin Eiglmeier
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Patrick Wincker
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Laurence Cattolico
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Véronique Anthouard
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Inge Holm
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Article dans une revue
istex
hal-02683098
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Whole Genome Sequence Comparisons and “Full-Length” cDNA Sequences: A Combined Approach to Evaluate and Improve Arabidopsis Genome Annotation
Vanina Castelli
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Jean-Marc Aury
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Olivier Jaillon
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Patrick Wincker
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Christian Clepet
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Article dans une revue
hal-04789187
v1
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Genome duplication in the teleost fish Tretraodon nigroviridis reveals the early vertebrate proto-karyotype
Olivier Jaillon
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Jean-Marc Aury
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Frédéric Brunet
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Jean-Louis Petit
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Nicole Stange-Thomann
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Article dans une revue
hal-02681415
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Whole genome sequence comparisons and "full-lenght" cDNA sequences: a combined approach to evaluate and improve Arabidopdid genome annotation
V. Castelli
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J.M. Aury
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Olivier Jaillon
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Patrick Wincker
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Christian Clepet
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Genome Research, 2004, 14 (3), pp.406-413
Article dans une revue
hal-02672600
v1
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The DNA sequence and analysis of human chromosome 14
Roland Heilig
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Ralph Eckenberg
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Jean-Louis Petit
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Núria Fonknechten
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Corinne da Silva
et al.
Article dans une revue
hal-04312826
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Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis
E.P. Journet
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D. van Tuinen
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J. Gouzy
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H. Crespeau
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V. Carreau
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Nucleic Acids Research, 2002, 30, pp.5579-5592
Article dans une revue
hal-00427223
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Variability of the nonstructural 5A protein of hepatitis C virus type 3a isolates and relation to interferon sensitivity.
Sandrine Castelain
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Hafida Khorsi-Cauet
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J. Roussel
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Catherine François
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O. Jaillon
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Journal of Infectious Diseases, 2002, 185, pp.573-583
Article dans une revue
hal-00313004
v1
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Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis
Etienne-Pascal Journet
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Diederik van Tuinen
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Jerome Gouzy
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Hervé Crespeau
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V. Carreau
et al.
Article dans une revue
hal-02678310
v1
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The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403
Alexander Bolotin
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Patrick Wincker
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Stéphane Mauger
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Olivier Jaillon
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Karine Malarme
et al.
Article dans une revue
hal-04297851
v1
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The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403
A. Bolotin
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Patrick Wincker
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S. Mauger
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Olivier Jaillon
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Karine Malarme
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Genome Research, 2001, 11, pp.731-753
Article dans une revue
hal-02681585
v1
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Karyotype and chromosome location of characteristic tandem repeats in the pufferfish <i>Tetraodon nigroviridis</i>
C. Fischer
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C. Ozouf-Costaz
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H. Roest Crollius
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C. Dasilva
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O. Jaillon
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Article dans une revue
hal-04398482
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The Gene Encoding the Mouse Homologue of the Human Osteoclast-Specific 116-kDa V-ATPase Subunit Bears a Deletion in Osteosclerotic (oc/oc) Mutants
J.-C Scimeca
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A. Franchi
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C. Trojani
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Hugues Parrinello
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J Grosgeorge
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Article dans une revue
hal-02117516
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Characterization and Repeat Analysis of the Compact Genome of the Freshwater Pufferfish Tetraodon nigroviridis
H. Roest Crollius
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O. Jaillon
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C. Dasilva
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C. Ozouf-Costaz
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C. Fizames
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Article dans une revue
hal-03772367
v1
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Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence
Hugues Roest Crollius
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Olivier Jaillon
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Alain Bernot
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Corinne Dasilva
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Laurence Bouneau
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Article dans une revue
hal-03772374
v1
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Amplification and detection of the terminal 3' non-coding region of hepatitis C virus isolates
H. Khorsi
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T. Salabi
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Sandrine Castelain
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O. Jaillon
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P. Zawadzki
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Article dans une revue
istex
hal-03613712
v1
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Sequence analysis of the NS5A protein of European hepatitis C virus 1b isolates and relation to interferon sensitivity.
G. Duverlie
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Hafida Khorsi-Cauet
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Sandrine Castelain
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O. Jaillon
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Jacques Izopet
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J Gen Virol, 1998, 79 ( Pt 6), pp.1373-1381
Article dans une revue
hal-00313715
v1
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Sequence analysis of the NS5A protein of European hepatitis C virus 1b isolates and relation to interferon sensitivity.
F Lunel
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G Duverlie
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F Eb
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O Jaillon
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J Izopet
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Article dans une revue
hal-03613713
v1
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