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Olivier Rué

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Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy

Maxence Jollet , Mahendra Mariadassou , Olivier Rué , Laurence Pessemesse , Vincent Ollendorff
American Journal of Pathology, inPress, ⟨10.1016/j.ajpath.2023.10.010⟩
Journal articles hal-04383411v1
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Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Vergès , Marie-Hélène Desmonts , Dalal Werner
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1286661⟩
Journal articles hal-04282392v1
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Artisanal and farmer bread making practices differently shape fungal species community composition in French sourdoughs

Elisa Michel , Estelle Masson , Sandrine Bubbendorf , Léocadie Lapicque , Thibault Nidelet
Peer Community Journal, 2023, 3, pp.e11. ⟨10.24072/pcjournal.237⟩
Journal articles hal-04206586v1
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Towards a more accurate metabarcoding approach for studying fungal communities of fermented foods

Olivier Rué , Monika Coton , Eric Dugat-Bony , Kate Howell , Françoise Irlinger
Peer Community Journal, 2023, ⟨10.24072/pci.microbiol.100007⟩
Journal articles hal-04234976v1

Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Vergès , Marie-Hélène Desmonts , Dalal Werner
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1286661⟩
Journal articles hal-04302764v1
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Comparative analysis of bacterial diversity in clouds and aerosols

Raphaëlle Péguilhan , Florent Rossi , Olivier Rué , Muriel Joly , Pierre Amato
Atmospheric Environment, 2023, 298, pp.119635. ⟨10.1016/j.atmosenv.2023.119635⟩
Journal articles hal-04042603v1
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Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd

Mahendra Mariadassou , Laurent-Xavier Nouvel , Fabienne Constant , Diego P. Morgavi , Lucie Rault
Animal Microbiome, 2023, 5 (1), pp.32. ⟨10.1186/s42523-023-00252-w⟩
Journal articles hal-04126196v1

Experimental and methodological framework for the assessment of nucleic acids in airborne microorganisms

Raphaëlle Péguilhan , Florent Rossi , Olivier Rué , Muriel Joly , Pierre Amato
bioRxiv : the preprint server for biology, 2023, ⟨10.1101/2023.10.10.561683⟩
Journal articles hal-04271307v1
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Microbial communities of a variety of 75 homemade fermented vegetables

Anne Thierry , Marie-Noelle Madec , Victoria Chuat , Anne-Sophie Bage , Olivier Picard
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1323424⟩
Journal articles hal-04350660v1
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Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory

Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Cédric Midoux , Olivier Rué
Viruses, 2022, 14 (8), pp.1620. ⟨10.3390/v14081620⟩
Journal articles hal-03738602v1

Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs

Semi Zouiouich , Mahendra Mariadassou , Olivier Rué , Emily Vogtmann , Inge Huybrechts
Cancer Epidemiology, Biomarkers and Prevention, 2022, 31 (2), pp. 305-314. ⟨10.1158/1055-9965.EPI-21-0188⟩
Journal articles hal-03625845v1
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Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes

Núria Mach , Cédric Midoux , Sébastien Leclercq , Samuel Pennarun , Laurence Le Moyec
Communications Biology, 2022, 5, pp.1032. ⟨10.1038/s42003-022-03977-7⟩
Journal articles hal-03794437v2
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The ileal fungal microbiota is altered in Crohn's disease and is associated with the disease course

Maya Olaisen , Mathias Richard , Vidar Beisvåg , Atle van Beelen Granlund , Elin Røyset
Frontiers in Medicine, 2022, 9, pp.868812. ⟨10.3389/fmed.2022.868812⟩
Journal articles hal-04007387v1
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Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage

Pierre Ledormand , Nathalie Desmasures , Cédric Midoux , Olivier Rué , Marion Dalmasso
Microorganisms, 2022, 10 (6), pp.1203. ⟨10.3390/microorganisms10061203⟩
Journal articles hal-03693766v1
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Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota

Marie Frétin , Amaury Gérard , Anne Ferlay , Bruno Martin , S Buchin
Microorganisms, 2022, 10 (2), ⟨10.3390/microorganisms10020334⟩
Journal articles hal-03579395v1
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Microbial community dispersal from wheat grains to sourdoughs : a contribution of participatory research

Lucas von Gastrow , Elisa Michel , Judith Legrand , Rémy Amelot , Diego Segond
Molecular Ecology, 2022, 32 (10), pp.2413-2427. ⟨10.1111/mec.16630⟩
Journal articles hal-03741463v2

Insights into the cyanosphere: capturing the respective metabolisms of cyanobacteria and chemotrophic bacteria in natural conditions?

Noémie Pascault , Olivier Rué , Valentin Loux , Jacques Pédron , Véronique Martin
Environmental Microbiology Reports, 2021, 13 (3), pp.364-374. ⟨10.1111/1758-2229.12944⟩
Journal articles hal-03287195v1
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Nitric Oxide Impacts Human Gut Microbiota Diversity and Functionalities

Marion Leclerc , Cassandre Bedu-Ferrari , Lucie Etienne-Mesmin , Mahendra Mariadassou , Lucie Lebreuilly
mSystems, 2021, 6 (5), ⟨10.1128/mSystems.00558-21⟩
Journal articles hal-03413913v1

The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network

Malik Aydin , Cornelius Weisser , Olivier Rué , Mahendra Mariadassou , Sandra Maass
Frontiers in Allergy, 2021, 2, ⟨10.3389/falgy.2021.667562⟩
Journal articles hal-03244864v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers

Maria Bernard , Olivier Rué , Mahendra Mariadassou , Géraldine Pascal
Briefings in Bioinformatics, 2021, 22 (6), ⟨10.1093/bib/bbab318⟩
Journal articles hal-03323846v1

Diversity and dynamics of bacterial and fungal communities in cider for distillation

B. Misery , Patrick Legendre , Olivier Rué , Valérie Bouchart , H. Guichard
International Journal of Food Microbiology, 2021, 339, pp.108987. ⟨10.1016/j.ijfoodmicro.2020.108987⟩
Journal articles hal-03287173v1
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A Yarrowia lipolytica Strain Engineered for Pyomelanin Production

Macarena Larroude , Djamila Onésime , Olivier Rué , Jean-Marc Nicaud , Tristan Rossignol
Microorganisms, 2021, 9 (4), pp.838. ⟨10.3390/microorganisms9040838⟩
Journal articles hal-03274344v1
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Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model

Maxence Jollet , Kevin Nay , Angèle Chopard , Marie-Pierre Bareille , Arnaud Beck
Nutrients, 2021, 13 (11), ⟨10.3390/nu13113865⟩
Journal articles hal-03415988v1
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Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used for Soft-Cheese Manufacture

Sabrina Saltaji , Olivier Rué , Valérie Sopena , Sophie Sablé , Fatoumata Tambadou
Foods, 2020, 9 (5), pp.622. ⟨10.3390/foods9050622⟩
Journal articles hal-03516147v1
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Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere

Simon Poirier , Ngoc-Du Martin Luong , Valérie Anthoine , Sandrine Guillou , Jeanne-Marie Membré
Data in Brief, 2020, 30, pp.1-8. ⟨10.1016/j.dib.2020.105453⟩
Journal articles hal-02914971v1
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Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

Emilie Lejal , Agustin Estrada-Peña , Maud Marsot , Jean-Francois J.-F. Cosson , Olivier Rué
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01093⟩
Journal articles hal-02790980v1
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A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats

Valérie Daugé , Catherine Philippe , Mahendra Mariadassou , Olivier Rué , Jean-Charles Martin
Frontiers in Behavioral Neuroscience, 2020, 14, ⟨10.3389/fnbeh.2020.581296⟩
Journal articles hal-03225018v1
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First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice

Laurent Naudon , Adrien François , Mahendra Mariadassou , Magali Monnoye , Catherine Philippe
Behavioural Brain Research, 2020, 384, ⟨10.1016/j.bbr.2020.112549⟩
Journal articles hal-02503302v1
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Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro‐organism and histamine analysis using NGS, qPCR and HPLC‐DAD

Alessandra Danile de Lira , Caroline Isabel Kothe , Olivier Rué , Cédric Midoux , Michele Bertoni Mann
Journal of Applied Microbiology, 2020, 128 (5), pp.1448-1459. ⟨10.1111/jam.14566⟩
Journal articles hal-02903118v1

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater

Tiago P. Delforno , Thais Z. Macedo , Cedric Midoux , Gileno V. Lacerda , Olivier Rué
Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩
Journal articles hal-01888286v1
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Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses

Eric Dugat-Bony , Pascal Bonnarme , Sébastien Fraud , Jessie Catellote , Anne-Sophie Sarthou
Food Research International, 2019, 125, pp.108643. ⟨10.1016/j.foodres.2019.108643⟩
Journal articles hal-02349939v1
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Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué
Le Cahier des Techniques de l'INRA, 2019, 2019 (97), pp.1-23
Journal articles hal-02311421v1
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Gut bacteria are critical for optimal muscle functiona potential link with glucose homeostasis

Kevin Nay , Maxence Jollet , Benedicte Goustard , Narjes Baati , Barbara Vernus
AJP - Endocrinology and Metabolism, 2019, 317 (1), pp.E158-E171. ⟨10.1152/ajpendo.00521.2018⟩
Journal articles hal-02152871v1
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Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products

Simon Poirier , Olivier Rué , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Valentin Loux
BMC Research Notes, 2018, 11 (1), pp.1-5. ⟨10.1186/s13104-018-3908-2⟩
Journal articles hal-02048857v1
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Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing

Simon Poirier , Olivier Rué , Raphaelle Peguilhan , Gwendoline Coeuret , Monique Zagorec
PLoS ONE, 2018, 13 (9), ⟨10.1371/journal.pone.0204629⟩
Journal articles hal-02621350v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Journal articles hal-01820559v1
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Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

Amélie Juanchich , Philippe Bardou , Olivier Rué , Jean-Charles Gabillard , Christine Gaspin
BMC Genomics, 2016, 17:164 (1), pp.1-12. ⟨10.1186/s12864-016-2505-9⟩
Journal articles hal-01509042v1
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Draft Anaplasma phagocytophilum Genome Sequences from Five Cows, Two Horses, and One Roe Deer Collected in Europe.

Thibaud Dugat , Marie-Noelle Rossignol , Olivier Rué , Valentin Loux , Sylvain Marthey
Genome Announcements, 2016, 4 (6), 2 p. ⟨10.1128/genomeA.00950-16⟩
Journal articles hal-01594527v1
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Ingredients for in silico miRNA identification and annotation

Christine Gaspin , Olivier Rué , Matthias Zytnicki
JSM Biotechnology and Biomedical Engineering, 2016, 3 (5), pp.1-5
Journal articles hal-01607400v1

MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheeses

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Cécile Neuvéglise , Olivier Rué
FORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France
Conference papers hal-04221356v1

Variable and core functional rhizosphere microbiota associated with seven Medicago truncatula genotypes

Zhu, Liya , Olivier Rué , Florence Deau , Julie Cremaschi , Valentin Loux
Journée doctorants UMR Agroécologie, Nov 2023, Dijon, France
Conference papers hal-04317070v1

Variable and core functional microbiota associated with seven Medicago truncatula genotypes

Zhu, Liya , Olivier Rué , Florence Deau , Julie Cremaschi , Valentin Loux
12th International PGPR Workshop 2023, May 2023, Toulouse, France
Conference papers hal-04139303v1

Transcriptomic and proteomic response of a Liquorilactobacillus mali strain from cider to a lytic phage infection

Pierre Ledormand , Nathalie Desmasures , Benoit Bernay , Olivier Rué , Cédric Midoux
Société Francaise Microbiologie, 2021, Nantes, France
Conference papers hal-03896401v1

Shotgun metagenomics sequencing of the rhizosphere microbiota associated to seven ecotypes of Medicago truncatula

Julie Cremaschi , Olivier Rué , Florence Deau , Philippe Lemanceau , Valentin Loux
Rhizosphere 5, Jul 2019, Saskatoon, Saskatchewan, Canada
Conference papers hal-02735116v1

Baker’s bread-making practices and house microbiota shape fungal species diversity in french sourdoughs

Delphine Sicard , Elisa Michel , Judith Legrand , Estelle Masson , Sandrine Bubendorff
Harlan III, Jun 2019, Montpellier, France
Conference papers hal-02950822v1

Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiota

Olivier Rué , Simon Poirier , Raphaelle Peguilhan , Valentin Loux , Marie-Christine Champomier-Vergès
JOBIM 20. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France
Conference papers hal-02947091v1

Domestication of microbial communities for bread making: insights from a participatory research project

Elisa Michel , Judith Legrand , Estelle Masson , Sandrine Bubendorff , Stephane Guezenec
The 2019 Congress of the European Society for Evolutionary Biology, ESEB, Aug 2019, Turku, Finland
Conference papers hal-02950758v1

Deciphering intra-species bacterial diversity using gyrB amplicon sequencing

Olivier Rué
JOBIM 2019, Société Française de Bio-Informatique (SFBI). FRA.; Centre National de la Recherche Scientifique (CNRS). FRA.; Institut Français de Bioinformatique (IFB). FRA., Jul 2019, Nantes, France. 422 p
Conference papers hal-02266901v1

Is skeletal muscle remodeling associated with gut microbiota signature?

Maxence Jollet , Barbara Vernus , Anne Bonnieu , Mahendra Mariadassou , Olivier Rué
6th World Congress on Targeting Microbiota, Oct 2018, Porto, Portugal. pp.1
Conference papers hal-02736948v1

Functional signatures of soil fungal communities in response to forest tree phenology revealed by metatranscriptome analysis

Marc Buée , Lucas Auer , Patricia Luis , Olivier Rué , Valentin Loux
3rd MPItM-Labex ARBRE Workshop, Nov 2018, cologne, Germany
Conference papers hal-03339776v1
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Domestication of microbial community in action : a participatory research and multidisciplinary study of sourdough bread

Elisa Michel , Maria Belen Carbonetto , Charlotte Urien , Emilie Lhomme , Stephane Guezenec
Second Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France
Conference papers hal-02008729v1
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An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Conference papers hal-01839185v1

Annotation of the oak genome sequence and associated bioinformatic resources

Joelle J. Amselem , Jean Marc Aury , Nicolas Francillonne , Tina Alaeitabar , Corinne da Silva
IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02741128v1

Exploration of dairy cow holobiont revealed an important sharing of microbes between anatomic sites within individual hosts throughout lactation but sharing was limited in the herd

Mahendra Mariadassou , Laurent-Xavier Nouvel , Fabienne Constant , Diego Morgavi , Lucie Rault
https://www.adsa.org/Meetings/2023-Annual-Meeting. ADSA annual meeting 2023, Jun 2023, Ottawa, Canada. , 2023
Conference poster hal-04164713v1

Le cidre est une matrice délicate pour l’étude des bactériophages et des phageomes.

Pierre Ledormand , Nathalie Desmasures , Céline Caillard , Erwan Renard , Didier Goux
Société Française de Microbiologie 2022, 2022, Nantes, France
Conference poster hal-03896438v1

Different Medicago truncatula genotypes, expressing different phenotypes, modulate microbial functional genes in the rhizosphere

Zhu, Liya , Olivier Rué , Florence Deau , Julie Cremaschi , Valentin Loux
miCROPe 2022, international Symposium microbe-assisted crop production opportunities, challenges & needs, Jul 2022, Vienne, France
Conference poster hal-04199757v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline

Vincent Darbot , Moussa Samb , Maria Bernard , Olivier Rué , Géraldine Pascal
JOBIM 2022, Jul 2022, Rennes, France.
Conference poster hal-03806133v1
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Implementing a Text Mining Service Offer on the Migale Bioinformatics Platform

Mouhamadou Ba , Véronique Martin , Olivier Rué , Sophie Schbath , Valérie Vidal
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Conference poster hal-04176740v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Conference poster hal-04176761v1
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Bacteriophages infecting surface bacteria from a smear-ripened cheese are persistent and contaminate the dairy plant

Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Inès Pedros , Cédric Midoux
Viruses of Microbes (VoM) 2022, Jul 2022, Guimarães, Portugal
Conference poster hal-04416527v1
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New virulent bacteriophages isolated from the surface of Epoisses cheese infect ripening bacteria

Thomas Paillet , Julien Lossouarn , Inès Pedros , Cédric Midoux , Olivier Rué
Sixth symposium of the French PHAGE Network, Oct 2021, Roscoff, France
Conference poster hal-03441698v1
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New insights into cow holobiont in relation to heath

Sergine Even , Mahendra Mariadassou , Xavier Nouvel , Fabienne F. Constant , Diego Morgavi
16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France
Conference poster hal-03361039v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021
Conference poster hal-04176768v1

Bacteriophage ecology of cider, an alcoholic fermented beverage: phages, are you there?

Pierre Ledormand , Nathalie Desmasures , Didier Goux , Cédric Midoux , Olivier Rué
LAB symposium, 2021, Egmond aan Zee, Netherlands
Conference poster hal-03896414v1
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Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?

Benoit Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Valentin Loux , Olivier Rué
JOBIM, Jun 2020, Montpellier, France.
Conference poster hal-03451271v1
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste

Cedric Midoux , Franciele Camargo , Olivier Rué , Mahendra Mariadassou , Valentin Loux
JOBIM, Jun 2020, Montpellier, France
Conference poster hal-02902758v1
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Testing markers to characterize microbial communities in food ecosystems using a metagenomics approach

Claire Vincent , Serge Casaregola , Monika Coton , Céline Delbes , Hugo Devillers
JOBIM, Jun 2020, Montpellier, France
Conference poster hal-02914960v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Damien Berry , David Christiany , Hélène Chiapello , Olivier Inizan
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Conference poster hal-04176782v1
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Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.

Maria Bernard , Olivier Rué , Malo Le Boulch , Jean Mainguy , Laurent Cauquil
DefisPHASE 2019, 2019, Rennes, France
Conference poster hal-03851900v1
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Plateforme bioinformatique MIGALE

Hélène Chiapello , Sandra Dérozier , Olivier Inizan , Mahendra Mariadassou , Véronique Martin
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019
Conference poster hal-04176805v1
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Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes

Vuong Quoc Hoang Ngo , Cédric Midoux , Olivier Rué , Mahendra Mariadassou , Violette Da Cunha
Phages in Grenoble, Oct 2019, Grenoble, France.
Conference poster hal-04360160v1
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Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data

Cédric Midoux , Guillaume Perréal , Marion Predhumeau , Olivier Rué , Yannick Fayolle
AD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands
Conference poster hal-04361137v1
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Feedback on a c omparative metatranscriptomic analysis

Cedric Midoux , Tiago P. Delforno , Thais Z. Macedo , Gileno V. Lacerda , Olivier Rué
JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019
Conference poster hal-02735859v1

Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiotaImproving

Simon Poirier , Raphaelle Peguilhan , Olivier Rué , Valentin Loux , Marie-Christine Champomier-Verges
Food Micro 2018, Sep 2018, Berlin, Germany. , 2018
Conference poster hal-02786728v1
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data

Cedric Midoux , Olivier Rué , Olivier Chapleur , Mahendra Mariadassou , Théodore Bouchez
JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018
Conference poster hal-02737257v1

Domestication of microbial community in action : a participatory research and multidisciplinary study of sourdough bread

Elisa Michel , Maria Belen Carbonetto , Charlotte Urien , Emilie Lhomme , Stephane Guezenec
II Joint Congress on Evolutionary Biology • Montpellier 2018, Aug 2018, Montpellier, France
Conference poster hal-02954338v1
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New -omics data analysis activity on Migale platform for MEM community

Olivier Rué , Valentin Loux , Sophie Schbath
Journées d'Animation MEM 2017, Jan 2017, Paris la Vilklette, France. 2017
Conference poster hal-01730003v1