Olivier Rué

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Publications

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Gut microbiota dysfunction in Crohn’s disease

Sylvie Buffet-Bataillon , Gabriela Durão , Isabelle Luron Le Huërou-Luron , Olivier Rué , Yann Le Cunff et al.
Frontiers in Cellular and Infection Microbiology, 2025, 15, pp.1540352. ⟨10.3389/fcimb.2025.1540352⟩
Article dans une revue hal-04973386 v1
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A comprehensive, large-scale analysis of “terroir” cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Olivier Rué , Cécile Neuvéglise et al.
ISME Communications, 2024, 4 (1), pp.ycae095. ⟨10.1093/ismeco/ycae095⟩
Article dans une revue hal-04668230 v1

Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data.

Cédric Midoux , Olivier Rué , Olivier Chapleur , Ariane Bize , Valentin Loux et al.
Journal of Open Source Software, 2024, 9 (103), pp.6704. ⟨10.21105/joss.06704⟩
Article dans une revue hal-04785149 v1
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Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy

Maxence Jollet , Mahendra Mariadassou , Olivier Rué , Laurence Pessemesse , Vincent Ollendorff et al.
American Journal of Pathology, 2024, 194 (2), pp.264-279. ⟨10.1016/j.ajpath.2023.10.010⟩
Article dans une revue hal-04383411 v1
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Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd

Mahendra Mariadassou , Laurent-Xavier Nouvel , Fabienne Constant , Diego P. Morgavi , Lucie Rault et al.
Animal Microbiome, 2023, 5 (1), pp.32. ⟨10.1186/s42523-023-00252-w⟩
Article dans une revue hal-04126196 v1
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Comparison of metabarcoding taxonomic markers to describe fungal communities in fermented foods

Olivier Rué , Monika Coton , Eric Dugat-Bony , Kate Howell , Françoise Irlinger et al.
Peer Community Journal, 2023, 3, pp.e97. ⟨10.24072/pcjournal.321⟩
Article dans une revue hal-04234976 v1
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Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Vergès , Marie-Hélène Desmonts , Dalal Werner et al.
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1286661⟩
Article dans une revue hal-04282392 v1
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Artisanal and farmer bread making practices differently shape fungal species community composition in French sourdoughs

Elisa Michel , Estelle Masson , Sandrine Bubbendorf , Léocadie Lapicque , Thibault Nidelet et al.
Peer Community Journal, 2023, 3, pp.e11. ⟨10.24072/pcjournal.237⟩
Article dans une revue hal-04206586 v1
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Comparative analysis of bacterial diversity in clouds and aerosols

Raphaëlle Péguilhan , Florent Rossi , Olivier Rué , Muriel Joly , Pierre Amato
Atmospheric Environment, 2023, 298, pp.119635. ⟨10.1016/j.atmosenv.2023.119635⟩
Article dans une revue hal-04042603 v1
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Microbial communities of a variety of 75 homemade fermented vegetables

Anne Thierry , Marie-Noelle Madec , Victoria Chuat , Anne-Sophie Bage , Olivier Picard et al.
Frontiers in Microbiology, 2023, 14, pp.1323424. ⟨10.3389/fmicb.2023.1323424⟩
Article dans une revue hal-04350660 v1
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Microbial community dispersal from wheat grains to sourdoughs : a contribution of participatory research

Lucas von Gastrow , Elisa Michel , Judith Legrand , Rémy Amelot , Diego Segond et al.
Molecular Ecology, 2023, 32 (10), pp.2413-2427. ⟨10.1111/mec.16630⟩
Article dans une revue hal-03741463 v2
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Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs

Semi Zouiouich , Mahendra Mariadassou , Olivier Rué , Emily Vogtmann , Inge Huybrechts et al.
Cancer Epidemiology, Biomarkers and Prevention, 2022, 31 (2), pp. 305-314. ⟨10.1158/1055-9965.EPI-21-0188⟩
Article dans une revue hal-03625845 v1
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Investigation of the Phageome and Prophages in French Cider, a Fermented Beverage

Pierre Ledormand , Nathalie Desmasures , Cédric Midoux , Olivier Rué , Marion Dalmasso
Microorganisms, 2022, 10 (6), pp.1203. ⟨10.3390/microorganisms10061203⟩
Article dans une revue hal-03693766 v1
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Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota

Marie Frétin , Amaury Gérard , Anne Ferlay , Bruno Martin , S Buchin et al.
Microorganisms, 2022, 10 (2), ⟨10.3390/microorganisms10020334⟩
Article dans une revue hal-03579395 v1
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The ileal fungal microbiota is altered in Crohn's disease and is associated with the disease course

Maya Olaisen , Mathias Richard , Vidar Beisvåg , Atle van Beelen Granlund , Elin Røyset et al.
Frontiers in Medicine, 2022, 9, pp.868812. ⟨10.3389/fmed.2022.868812⟩
Article dans une revue hal-04007387 v1
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Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory

Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Cédric Midoux , Olivier Rué et al.
Viruses, 2022, 14 (8), pp.1620. ⟨10.3390/v14081620⟩
Article dans une revue hal-03738602 v1
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Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes

Núria Mach , Cédric Midoux , Sébastien Leclercq , Samuel Pennarun , Laurence Le Moyec et al.
Communications Biology, 2022, 5, pp.1032. ⟨10.1038/s42003-022-03977-7⟩
Article dans une revue hal-03794437 v2
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A Yarrowia lipolytica Strain Engineered for Pyomelanin Production

Macarena Larroude , Djamila Onésime , Olivier Rué , Jean-Marc Nicaud , Tristan Rossignol
Microorganisms, 2021, 9 (4), pp.838. ⟨10.3390/microorganisms9040838⟩
Article dans une revue hal-03274344 v1
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Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model

Maxence Jollet , Kevin Nay , Angèle Chopard , Marie-Pierre Bareille , Arnaud Beck et al.
Nutrients, 2021, 13 (11), ⟨10.3390/nu13113865⟩
Article dans une revue hal-03415988 v1

Diversity and dynamics of bacterial and fungal communities in cider for distillation

B. Misery , Patrick Legendre , Olivier Rué , Valérie Bouchart , H. Guichard et al.
International Journal of Food Microbiology, 2021, 339, pp.108987. ⟨10.1016/j.ijfoodmicro.2020.108987⟩
Article dans une revue hal-03287173 v1
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The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network

Malik Aydin , Cornelius Weisser , Olivier Rué , Mahendra Mariadassou , Sandra Maaß et al.
Frontiers in Allergy, 2021, 2, ⟨10.3389/falgy.2021.667562⟩
Article dans une revue hal-03244864 v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers

Maria Bernard , Olivier Rué , Mahendra Mariadassou , Géraldine Pascal
Briefings in Bioinformatics, 2021, 22 (6), ⟨10.1093/bib/bbab318⟩
Article dans une revue hal-03323846 v1
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Nitric Oxide Impacts Human Gut Microbiota Diversity and Functionalities

Marion Leclerc , Cassandre Bedu-Ferrari , Lucie Etienne-Mesmin , Mahendra Mariadassou , Lucie Lebreuilly et al.
mSystems, 2021, 6 (5), ⟨10.1128/mSystems.00558-21⟩
Article dans une revue hal-03413913 v1

Insights into the cyanosphere: capturing the respective metabolisms of cyanobacteria and chemotrophic bacteria in natural conditions?

Noémie Pascault , Olivier Rué , Valentin Loux , Jacques Pédron , Véronique Martin et al.
Environmental Microbiology Reports, 2021, 13 (3), pp.364-374. ⟨10.1111/1758-2229.12944⟩
Article dans une revue hal-03287195 v1
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First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice

Laurent Naudon , Adrien François , Mahendra Mariadassou , Magali Monnoye , Catherine Philippe et al.
Behavioural Brain Research, 2020, 384, ⟨10.1016/j.bbr.2020.112549⟩
Article dans une revue hal-02503302 v1
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Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

Emilie Lejal , Agustin Estrada-Peña , Maud Marsot , Jean-Francois J.-F. Cosson , Olivier Rué et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01093⟩
Article dans une revue hal-02790980 v1
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Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere

Simon Poirier , Ngoc-Du Martin Luong , Valérie Anthoine , Sandrine Guillou , Jeanne-Marie Membré et al.
Data in Brief, 2020, 30, pp.1-8. ⟨10.1016/j.dib.2020.105453⟩
Article dans une revue (data paper) hal-02914971 v1
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Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used for Soft-Cheese Manufacture

Sabrina Saltaji , Olivier Rué , Valérie Sopena , Sophie Sablé , Fatoumata Tambadou et al.
Foods, 2020, 9 (5), pp.622. ⟨10.3390/foods9050622⟩
Article dans une revue hal-03516147 v1
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A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats

Valérie Daugé , Catherine Philippe , Mahendra Mariadassou , Olivier Rué , Jean-Charles Martin et al.
Frontiers in Behavioral Neuroscience, 2020, 14, ⟨10.3389/fnbeh.2020.581296⟩
Article dans une revue hal-03225018 v1
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Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro‐organism and histamine analysis using NGS, qPCR and HPLC‐DAD

Alessandra Danile de Lira , Caroline Isabel Kothe , Olivier Rué , Cédric Midoux , Michele Bertoni Mann et al.
Journal of Applied Microbiology, 2020, 128 (5), pp.1448-1459. ⟨10.1111/jam.14566⟩
Article dans une revue hal-02903118 v1
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Gut bacteria are critical for optimal muscle functiona potential link with glucose homeostasis

Kevin Nay , Maxence Jollet , Benedicte Goustard , Narjes Baati , Barbara Vernus et al.
AJP - Endocrinology and Metabolism, 2019, 317 (1), pp.E158-E171. ⟨10.1152/ajpendo.00521.2018⟩
Article dans une revue hal-02152871 v1
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Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses

Eric Dugat-Bony , Pascal Bonnarme , Sébastien Fraud , Jessie Catellote , Anne-Sophie Sarthou et al.
Food Research International, 2019, 125, pp.108643. ⟨10.1016/j.foodres.2019.108643⟩
Article dans une revue hal-02349939 v1

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater

Tiago P. Delforno , Thais Z. Macedo , Cedric Midoux , Gileno V. Lacerda , Olivier Rué et al.
Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩
Article dans une revue hal-01888286 v1
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Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué et al.
Cahier des Techniques de l'INRA, 2019, 97, pp.46-69
Article dans une revue (article de synthèse) hal-02311421 v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat et al.
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Article dans une revue hal-01820559 v1
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Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing

Simon Poirier , Olivier Rué , Raphaelle Peguilhan , Gwendoline Coeuret , Monique Zagorec et al.
PLoS ONE, 2018, 13 (9), ⟨10.1371/journal.pone.0204629⟩
Article dans une revue hal-02621350 v1
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Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products

Simon Poirier , Olivier Rué , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Valentin Loux et al.
BMC Research Notes, 2018, 11 (1), pp.1-5. ⟨10.1186/s13104-018-3908-2⟩
Article dans une revue hal-02048857 v1
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Ingredients for in silico miRNA identification and annotation

Christine Gaspin , Olivier Rué , Matthias Zytnicki
JSM Biotechnology and Biomedical Engineering, 2016, 3 (5), pp.1-5
Article dans une revue (article de synthèse) hal-01607400 v1
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Draft Anaplasma phagocytophilum Genome Sequences from Five Cows, Two Horses, and One Roe Deer Collected in Europe.

Thibaud Dugat , Marie-Noelle Rossignol , Olivier Rué , Valentin Loux , Sylvain Marthey et al.
Genome Announcements, 2016, 4 (6), 2 p. ⟨10.1128/genomeA.00950-16⟩
Article dans une revue hal-01594527 v1
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Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

Amélie Juanchich , Philippe Bardou , Olivier Rué , Jean-Charles Gabillard , Christine Gaspin et al.
BMC Genomics, 2016, 17:164 (1), pp.1-12. ⟨10.1186/s12864-016-2505-9⟩
Article dans une revue hal-01509042 v1

Microbiome, disease-resistant varieties, and wine quality

Gabriela Pinto Miguel , Martine Pradal , Olivier Rué , Evelyne Aguera , Cécile Neuvéglise
45ème congrès mondial de la vigne et du vin, Oct 2024, Dijon, France. ⟨10.58233/d4ACq14T⟩
Communication dans un congrès hal-04954449 v1
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Présentation du service d'analyse de données

Olivier Rué
Migale & Vous, May 2024, Jouy-en-Josas (FR), France
Communication dans un congrès hal-04963446 v1

Impact of superchilling technique on the microbiological quality of fresh salmon

Pierre Collin , Maud Darsonval , Olivier Rué , Fatou Toutie Ndoye , Graciela Alvarez et al.
FoodMicro 2024, ICFMH, Jul 2024, Burgos, Spain
Communication dans un congrès hal-04760035 v1

News about FROGS

Olivier Rué , Lucas Auer , Gabryelle Agoutin , Maria Bernard , Géraldine Pascal
PEPI IBIS, Nov 2024, Visio Conférence, France
Communication dans un congrès hal-04786277 v1

Drivers of microbial diversity in French Protected designation of Origin (PDO) cheeses

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Cécile Neuvéglise , Olivier Rué et al.
IDF World Dairy Science, Oct 2024, Paris, France
Communication dans un congrès hal-04820075 v1

Metagenomics reveal contrasted and dynamic responses of microbial soil communities to in situ wheat straw amendment in croplands or grasslands

Domitille Jarrige , Vincent Tardy , Valentin Loux , Olivier Rué , Abad Chabbi et al.
Symposium on Environmental and Agronomical Genomics organisé par France Génomique and the Research Group “Environmental Genomics", Feb 2024, Toulouse, France
Communication dans un congrès hal-04654371 v1

Variable and core functional rhizosphere microbiota associated with seven Medicago truncatula genotypes

Zhu, Liya , Olivier Rué , Florence Deau , Julie Cremaschi , Valentin Loux et al.
Journée doctorants UMR Agroécologie, Nov 2023, Dijon, France
Communication dans un congrès hal-04317070 v1

MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheeses

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Cécile Neuvéglise , Olivier Rué et al.
FORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France
Communication dans un congrès hal-04221356 v1

Variable and core functional microbiota associated with seven Medicago truncatula genotypes

Zhu, Liya , Olivier Rué , Florence Deau , Julie Cremaschi , Valentin Loux et al.
12th International PGPR Workshop 2023, May 2023, Toulouse, France
Communication dans un congrès hal-04139303 v1

Transcriptomic and proteomic response of a Liquorilactobacillus mali strain from cider to a lytic phage infection

Pierre Ledormand , Nathalie Desmasures , Benoit Bernay , Olivier Rué , Cédric Midoux et al.
Société Francaise Microbiologie, 2021, Nantes, France
Communication dans un congrès hal-03896401 v1
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Élément du portfolio - projet METABARFOOD

Olivier Rué
visite HCERES unité MaIAGE, Dec 2024, Jouy-En-Josas, France. ⟨10.1093/bib/bbab318⟩
Communication dans un congrès hal-04963473 v1

Domestication of microbial communities for bread making: insights from a participatory research project

Elisa Michel , Judith Legrand , Estelle Masson , Sandrine Bubendorff , Stephane Guezenec et al.
The 2019 Congress of the European Society for Evolutionary Biology, ESEB, Aug 2019, Turku, Finland
Communication dans un congrès hal-02950758 v1

Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiota

Olivier Rué , Simon Poirier , Raphaelle Peguilhan , Valentin Loux , Marie-Christine Champomier-Vergès et al.
JOBIM 20. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France
Communication dans un congrès hal-02947091 v1

Baker’s bread-making practices and house microbiota shape fungal species diversity in french sourdoughs

Delphine Sicard , Elisa Michel , Judith Legrand , Estelle Masson , Sandrine Bubendorff et al.
Harlan III, Jun 2019, Montpellier, France
Communication dans un congrès hal-02950822 v1

Shotgun metagenomics sequencing of the rhizosphere microbiota associated to seven ecotypes of <em>Medicago truncatula</em>

Julie Cremaschi , Olivier Rué , Florence Deau , Philippe Lemanceau , Valentin Loux et al.
Rhizosphere 5, Jul 2019, Saskatoon, Saskatchewan, Canada
Communication dans un congrès hal-02735116 v1

Is skeletal muscle remodeling associated with gut microbiota signature?

Maxence Jollet , Barbara Vernus , Anne Bonnieu , Mahendra Mariadassou , Olivier Rué et al.
6th World Congress on Targeting Microbiota, Oct 2018, Porto, Portugal. pp.1
Communication dans un congrès hal-02736948 v1

Deciphering intra-species bacterial diversity using gyrB amplicon sequencing

Olivier Rué
JOBIM 2019, Société Française de Bio-Informatique (SFBI). FRA.; Centre National de la Recherche Scientifique (CNRS). FRA.; Institut Français de Bioinformatique (IFB). FRA., Jul 2019, Nantes, France. 422 p
Communication dans un congrès hal-02266901 v1
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An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury et al.
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Communication dans un congrès hal-01839185 v1

Functional signatures of soil fungal communities in response to forest tree phenology revealed by metatranscriptome analysis

Marc Buée , Lucas Auer , Patricia Luis , Olivier Rué , Valentin Loux et al.
3rd MPItM-Labex ARBRE Workshop, Nov 2018, cologne, Germany
Communication dans un congrès hal-03339776 v1
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Domestication of microbial community in action : a participatory research and multidisciplinary study of sourdough bread

Elisa Michel , Maria Belen Carbonetto , Charlotte Urien , Emilie Lhomme , Stephane Guezenec et al.
Second Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France
Communication dans un congrès hal-02008729 v1

Annotation of the oak genome sequence and associated bioinformatic resources

Joelle J. Amselem , Jean Marc Aury , Nicolas Francillonne , Tina Alaeitabar , Corinne da Silva et al.
IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès hal-02741128 v1

Biomechanical evaluation for the identification of free kick determinants in soccer

Guillaume Nicolas , Benoit Bideau , Richard Kulpa , Olivier Rué , Maxime Billien et al.
European Workshop On Movement Science, 2009, Lisbon, Portugal
Communication dans un congrès hal-04783543 v1

Exploration of dairy cow holobiont revealed an important sharing of microbes between anatomic sites within individual hosts throughout lactation but sharing was limited in the herd

Mahendra Mariadassou , Laurent-Xavier Nouvel , Fabienne Constant , Diego Morgavi , Lucie Rault et al.
https://www.adsa.org/Meetings/2023-Annual-Meeting. ADSA annual meeting 2023, Jun 2023, Ottawa, Canada. , 2023
Poster de conférence hal-04164713 v1
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Exploring the microbiota of resistant varieties in organic farming

Evelyne Aguera , Romain Maindron , Erick Casalta , Laurent Deliere , Aarti Jaswa et al.
8th Conference on Physiology of Yeasts and Filamentous Fungi - PYFF8, Jun 2023, Cork, Ireland.
Poster de conférence hal-04665549 v1
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Bacteriophages infecting surface bacteria from a smear-ripened cheese are persistent and contaminate the dairy plant

Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Inès Pedros , Cédric Midoux et al.
Viruses of Microbes (VoM) 2022, Jul 2022, Guimarães, Portugal
Poster de conférence hal-04416527 v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou et al.
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Poster de conférence hal-04176761 v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline

Vincent Darbot , Moussa Samb , Maria Bernard , Olivier Rué , Géraldine Pascal
JOBIM 2022, Jul 2022, Rennes, France.
Poster de conférence hal-03806133 v1
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Rôle du microbiote dans la relation entre activité physique, santé et bien-être

Benedicte Goustard , Barbara Vernus , Olivier Rué , Mahendra Mariadassou , Laurence Pessemesse et al.
Journées d'Animation Scientifiques, May 2022, Poitiers, France. 317, pp.E158 - E171
Poster de conférence hal-04804882 v1

Different Medicago truncatula genotypes, expressing different phenotypes, modulate microbial functional genes in the rhizosphere

Zhu, Liya , Olivier Rué , Florence Deau , Julie Cremaschi , Valentin Loux et al.
miCROPe 2022, international Symposium microbe-assisted crop production opportunities, challenges & needs, Jul 2022, Vienne, France
Poster de conférence hal-04199757 v1

Exploring the microbiota of resistant varieties in organic farming

Evelyne Aguera , Romain Maindron , Marine Touret , Laurent Deliere , Aarti Jaswa et al.
International seminar of Montpellier Vine & Wine Sciences, Oct 2022, Montpellier, France
Poster de conférence hal-04667137 v1

Le cidre est une matrice délicate pour l’étude des bactériophages et des phageomes.

Pierre Ledormand , Nathalie Desmasures , Céline Caillard , Erwan Renard , Didier Goux et al.
Société Française de Microbiologie 2022, 2022, Nantes, France
Poster de conférence hal-03896438 v1
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Implementing a Text Mining Service Offer on the Migale Bioinformatics Platform

Mouhamadou Ba , Véronique Martin , Olivier Rué , Sophie Schbath , Valérie Vidal et al.
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Poster de conférence hal-04176740 v1

Gut microbiota and skeletal muscle crosstalk : lessons from muscle remarkable phenotypes.

Maxence Jollet , Kévin Nay , Mahendra Mariadassou , Olivier Rué , A Chopard et al.
19th Congress of Association of Researchers in Physical and Sport Activities ACAPS, Nov 2021, Montpellier, France
Poster de conférence hal-04829963 v1

Bacteriophage ecology of cider, an alcoholic fermented beverage: phages, are you there?

Pierre Ledormand , Nathalie Desmasures , Didier Goux , Cédric Midoux , Olivier Rué et al.
LAB symposium, 2021, Egmond aan Zee, Netherlands
Poster de conférence hal-03896414 v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou et al.
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021
Poster de conférence hal-04176768 v1
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New virulent bacteriophages isolated from the surface of Epoisses cheese infect ripening bacteria

Thomas Paillet , Julien Lossouarn , Inès Pedros , Cédric Midoux , Olivier Rué et al.
Sixth symposium of the French PHAGE Network, Oct 2021, Roscoff, France
Poster de conférence hal-03441698 v1
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New insights into cow holobiont in relation to heath

Sergine Even , Mahendra Mariadassou , Xavier Nouvel , Fabienne F. Constant , Diego Morgavi et al.
16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France
Poster de conférence hal-03361039 v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Damien Berry , David Christiany , Hélène Chiapello , Olivier Inizan et al.
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Poster de conférence hal-04176782 v1
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Testing markers to characterize microbial communities in food ecosystems using a metagenomics approach

Claire Vincent , Serge Casaregola , Monika Coton , Céline Delbès , Hugo Devillers et al.
JOBIM, Jun 2020, Montpellier, France
Poster de conférence hal-02914960 v1
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste

Cedric Midoux , Franciele Camargo , Olivier Rué , Mahendra Mariadassou , Valentin Loux et al.
JOBIM, Jun 2020, Montpellier, France
Poster de conférence hal-02902758 v1
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Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?

Benoit Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Valentin Loux , Olivier Rué et al.
JOBIM, Jun 2020, Montpellier, France.
Poster de conférence hal-03451271 v1
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Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data

Cédric Midoux , Guillaume Perréal , Marion Predhumeau , Olivier Rué , Yannick Fayolle et al.
AD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands
Poster de conférence hal-04361137 v1
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Feedback on a c omparative metatranscriptomic analysis

Cedric Midoux , Tiago P. Delforno , Thais Z. Macedo , Gileno V. Lacerda , Olivier Rué et al.
JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019
Poster de conférence hal-02735859 v1
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Plateforme bioinformatique MIGALE

Hélène Chiapello , Sandra Dérozier , Olivier Inizan , Mahendra Mariadassou , Véronique Martin et al.
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019
Poster de conférence hal-04176805 v1
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Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes

Vuong Quoc Hoang Ngo , Cédric Midoux , Olivier Rué , Mahendra Mariadassou , Violette Da Cunha et al.
Phages in Grenoble, Oct 2019, Grenoble, France.
Poster de conférence hal-04360160 v1
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Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.

Maria Bernard , Olivier Rué , Malo Le Boulch , Jean Mainguy , Laurent Cauquil et al.
DefisPHASE 2019, 2019, Rennes, France
Poster de conférence hal-03851900 v1

Evaluation of gyrB amplicon sequencing in comparison to 16S rDNA amplicon sequencing to evaluate intra-species bacterial diversity in food microbiotaImproving

Simon Poirier , Raphaelle Peguilhan , Olivier Rué , Valentin Loux , Marie-Christine Champomier-Verges et al.
Food Micro 2018, Sep 2018, Berlin, Germany. , 2018
Poster de conférence hal-02786728 v1
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data

Cedric Midoux , Olivier Rué , Olivier Chapleur , Mahendra Mariadassou , Théodore Bouchez et al.
JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018
Poster de conférence hal-02737257 v1

Domestication of microbial community in action : a participatory research and multidisciplinary study of sourdough bread

Elisa Michel , Maria Belen Carbonetto , Charlotte Urien , Emilie Lhomme , Stephane Guezenec et al.
II Joint Congress on Evolutionary Biology • Montpellier 2018, Aug 2018, Montpellier, France
Poster de conférence hal-02954338 v1
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New -omics data analysis activity on Migale platform for MEM community

Olivier Rué , Valentin Loux , Sophie Schbath
Journées d'Animation MEM 2017, Jan 2017, Paris la Vilklette, France. 2017
Poster de conférence hal-01730003 v1