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Patrick Wincker

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Sea surface temperature reconstruction in the Pacific Ocean using multi-elemental proxy in Porites and Diploastrea corals: Application to Palau Archipelago

Marine Canesi , Éric Douville , Paolo Montagna , Louise Bordier , Sandrine Caquineau
Chemical Geology, 2024, 645, pp.121884. ⟨10.1016/j.chemgeo.2023.121884⟩
Journal articles hal-04337163v1
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Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions

Clemens Schauberger , Bo Thamdrup , Clarisse Lemonnier , Blandine Trouche , Julie Poulain
ISME Communications, 2024, 4 (1), pp.ycad005. ⟨10.1093/ismeco/ycad005⟩
Journal articles hal-04492228v1
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Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

Ana Paula Zotta Mota , Georgios Koutsovoulos , Laetitia Perfus-Barbeoch , Evelin Despot-Slade , Karine Labadie
Nature Communications, 2024, 15 (1), pp.773. ⟨10.1038/s41467-024-44914-y⟩
Journal articles hal-04489824v1
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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

Corentin Hochart , Lucas Paoli , Hans-Joachim Ruscheweyh , Guillem Salazar , Emilie Boissin
Nature Communications, 2023, 14 (1), pp.3037. ⟨10.1038/s41467-023-38502-9⟩
Journal articles hal-04176293v1
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Different environmental response strategies in sympatric corals from Pacific Islands

Barbara Porro , Thamilla Zamoum , Didier Forcioli , Eric Gilson , Adrien Poquet
Communications Earth & Environment, 2023, 4 (1), pp.311. ⟨10.1038/s43247-023-00946-8⟩
Journal articles hal-04205154v1
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Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean

Maggie M Reddy , Corentine Goossens , Yuxiang Zhou , Slimane Chaib , Delphine Raviglione
Communications Earth & Environment, 2023, 4 (1), pp.281. ⟨10.1038/s43247-023-00942-y⟩
Journal articles hal-04184949v1
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Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean

Eric J Armstrong , Julie Lê-Hoang , Quentin Carradec , Jean-Marc Aury , Benjamin Noel
Nature Communications, 2023, 14, pp.3056. ⟨10.1038/s41467-023-38610-6⟩
Journal articles cea-04171796v1
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Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies

Hugo Doré , Ulysse Guyet , Jade Leconte , Gregory Farrant , Benjamin Alric
The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩
Journal articles hal-04238382v1
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Pervasive tandem duplications and convergent evolution shape coral genomes

Benjamin Noel , France Denoeud , Alice Rouan , Carol Buitrago-López , Laura Capasso
Genome Biology, 2023, 24 (1), pp.123. ⟨10.1186/s13059-023-02960-7⟩
Journal articles hal-04117388v1

Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood

Stefanie Wagner , Andaine Seguin-Orlando , Jean-Charles Leplé , Thibault Leroy , Céline Lalanne
Molecular Ecology, 2023, ⟨10.1111/mec.16859⟩
Journal articles hal-04158430v1

Pan-Arctic plankton community structure and its global connectivity

Federico Ibarbalz , Nicolas Henry , Frédéric Mahé , Mathieu Ardyna , Adriana Zingone
Elementa: Science of the Anthropocene, 2023, 11 (1), ⟨10.1525/elementa.2022.00060⟩
Journal articles hal-04295751v1
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Predicting global distributions of eukaryotic plankton communities from satellite data

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé
ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩
Journal articles hal-04394784v1
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Differences in carbonate chemistry up-regulation of long-lived reef-building corals

Marine Canesi , Éric Douville , Paolo Montagna , Marco Taviani , Jarosław Stolarski
Scientific Reports, 2023, 13 (1), pp.11589. ⟨10.1038/s41598-023-37598-9⟩
Journal articles cea-04170119v1
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Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich
ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩
Journal articles hal-04184772v1
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Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Fabien Lombard , Guillaume Bourdin , Stéphane Pesant , Sylvain Agostini , Alberto Baudena
Scientific Data , 2023, 10 (1), pp.324. ⟨10.1038/s41597-022-01757-w⟩
Journal articles hal-04164118v1
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Mission Tara Microplastics: a holistic set of protocols and data resources for the field investigation of plastic pollution along the land-sea continuum in Europe

Jean-François Ghiglione , Valérie Barbe , Stéphane Bruzaud , Gaëtan Burgaud , Jérôme Cachot
Environmental Science and Pollution Research, 2023, ⟨10.1007/s11356-023-26883-9⟩
Journal articles hal-04302147v1
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Imputed genomes of historical horses provide insights into modern breeding

Evelyn T Todd , Aurore Fromentier , Richard Sutcliffe , Yvette Running , Horse Collin
iScience, 2023, 26 (7), pp.107104. ⟨10.1016/j.isci⟩
Journal articles hal-04242127v1
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Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation

Isabel Sanz-Sáez , Pablo Sánchez , Guillem Salazar , Shinichi Sunagawa , Colomban de Vargas
ISME Communications, 2023, 3 (1), ⟨10.1038/s43705-023-00290-0⟩
Journal articles cea-04481824v1
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Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes

Ferdinand Marlétaz , Arnaud Couloux , Julie Poulain , Karine Labadie , Corinne da Silva
Cell Genomics, 2023, 3 (4), pp.100295. ⟨10.1016/j.xgen.2023.100295⟩
Journal articles hal-04093287v1
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Diversity of the Pacific Ocean coral reef microbiome

Pierre Galand , Hans-Joachim Ruscheweyh , Guillem Salazar , Corentin Hochart , Nicolas Henry
Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩
Journal articles hal-04176291v1

Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments

Blandine Trouche , Clemens Schauberger , Feriel Bouderka , Jean-Christophe Auguet , Caroline Belser
ISME Communications, 2023, 3 (1), pp.133. ⟨10.1038/s43705-023-00341-6⟩
Journal articles hal-04388214v1

Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov
Life Science Alliance, 2023, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Journal articles cea-04321515v1
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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Caroline Belser , Julie Poulain , Karine Labadie , Frederick Gavory , Adriana Alberti
Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩
Journal articles hal-04176297v1
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Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes

Alex Veglia , Kalia Bistolas , Christian Voolstra , Benjamin Hume , Hans-Joachim Ruscheweyh
Communications Biology, 2023, 6 (1), pp.566. ⟨10.1038/s42003-023-04917-9⟩
Journal articles hal-04176296v1
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Pan-Arctic plankton community structure and its global connectivity

Federico M Ibarbalz , Nicolas Henry , Frédéric Mahé , Mathieu Ardyna , Adriana Zingone
Elementa: Science of the Anthropocene, 2023, 11 (1), pp.00060. ⟨10.1525/elementa.2022.00060⟩
Journal articles hal-04267640v1
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DNA methylation-based profiling of horse archaeological remains for age-at-death and castration

Xuexue Liu , Andaine Seguin- Orlando , Lorelei Chauvey , Gaëtan Tressières , Laure Tonasso-Calvie
iScience, 2023, 26 (3), pp.106144. ⟨10.1016/j.isci.2023.106144⟩
Journal articles cea-04286440v1
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Early dispersal of domestic horses into the Great Plains and northern Rockies

William Timothy Treal Taylor , Pablo Librado , Mila Hunska Tašunke Icu , Carlton Shield Chief Gover , Jimmy Arterberry
Science, 2023, 379 (6639), pp.1316-1323. ⟨10.1126/science.adc9691⟩
Journal articles hal-04065852v1
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Mirusviruses link herpesviruses to giant viruses

Morgan Gaïa , Lingjie Meng , Eric Pelletier , Patrick Forterre , Chiara Vanni
Nature, 2023, 616 (7958), pp.783-789. ⟨10.1038/s41586-023-05962-4⟩
Journal articles pasteur-04085734v1
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Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals

Alice Rouan , Melanie Pousse , Nadir Djerbi , Barbara Porro , Guillaume Bourdin
Nature Communications, 2023, 14 (1), pp.3038. ⟨10.1038/s41467-023-38499-1⟩
Journal articles cea-04171809v1
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Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation

Christian R Voolstra , Benjamin C C Hume , Eric J Armstrong , Guinther Mitushasi , Barbara Porro
npj Biodiversity, 2023, 2 (1), pp.15. ⟨10.1038/s44185-023-00020-8⟩
Journal articles hal-04157744v1
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Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei

Adrien Tran Y. Lu , Stephanie Ruault , Claire Daguin-Thiébaut , Jade Castel , Nicolas Bierne
Molecular Ecology, 2022, 31 (10), pp.2796-2813. ⟨10.1111/mec.16430⟩
Journal articles hal-03669635v1
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Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Journal articles hal-03781924v1
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Diversity and ecological footprint of Global Ocean RNA viruses

Guillermo Dominguez-Huerta , Ahmed Zayed , James Wainaina , Jiarong Guo , Funing Tian
Science, 2022, 376 (6598), pp.1202-1208. ⟨10.1126/science.abn6358⟩
Journal articles hal-03781935v1
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Genomic adaptation of the picoeukaryote $Pelagomonas\ calceolata$ to iron-poor oceans revealed by a chromosome-scale genome sequence

Nina Guérin , Marta Ciccarella , Elisa Flamant , Paul Frémont , Sophie Mangenot
Communications Biology, 2022, 5 (1), pp.983. ⟨10.1038/s42003-022-03939-z⟩
Journal articles cea-03791710v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Journal articles hal-03781942v1
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Diversity and evolution of pigment types in marine $Synechococcus$ cyanobacteria

Théophile Grébert , Laurence Garczarek , Vincent Daubin , Florian Humily , Dominique Marie
Genome Biology and Evolution, 2022, 14 (4), pp.evac035. ⟨10.1093/gbe/evac035⟩
Journal articles hal-03641745v1

Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Yucheng Wang , Mikkel Winther Pedersen , Inger Greve Alsos , Bianca de Sanctis , Fernando Racimo
Nature, 2022, 603, pp.E31-E31. ⟨10.1038/s41586-022-04628-x⟩
Journal articles insu-03745285v1
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Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov
Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Journal articles hal-03859139v1
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Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Tristan Cordier , Inès Barrenechea Angeles , Nicolas Henry , Franck Lejzerowicz , Cédric Berney
Science Advances , 2022, 8 (5), ⟨10.1126/sciadv.abj9309⟩
Journal articles hal-03561462v1

High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change

Sandra Garcés-Pastor , Eric Coissac , Sébastien Lavergne , Christoph Schwörer , Jean-Paul Theurillat
Nature Communications, 2022, 13 (1), pp.6559. ⟨10.1038/s41467-022-34010-4⟩
Journal articles hal-04387667v1
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Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France

Benoît Clavel , Sébastien Lepetz , Loreleï Chauvey , Stéphanie Schiavinato , Laure Tonasso-Calvière
Journal of Archaeological Science: Reports, 2022, 41, pp.103341. ⟨10.1016/j.jasrep.2022.103341⟩
Journal articles halshs-03755076v1

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Journal articles hal-03872940v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont
eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩
Journal articles hal-02399723v2
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A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Juan José Pierella Karlusich , Eric Pelletier , Lucie Zinger , Fabien Lombard , Adriana Zingone
Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩
Journal articles hal-03559541v1
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The genomic history and global expansion of domestic donkeys

Evelyn Todd , Laure Tonasso-Calvière , Loreleï Chauvey , Stéphanie Schiavinato , Antoine Fages
Science, 2022, 377 (6611), pp.1172-1180. ⟨10.1126/science.abo3503⟩
Journal articles hal-03827857v1

ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications

Charles Pouchon , Frédéric Boyer , Cristina Roquet , France Denoeud , Jérome Chave
Molecular Ecology Resources, 2022, 22 (5), pp.2018-2037. ⟨10.1111/1755-0998.13584⟩
Journal articles hal-03839343v1

Biosynthetic potential of the global ocean microbiome

Lucas Paoli , Hans-Joachim Ruscheweyh , Clarissa Forneris , Florian Hubrich , Satria Kautsar
Nature, 2022, 607 (7917), pp.111-118. ⟨10.1038/s41586-022-04862-3⟩
Journal articles hal-04376240v1

Reply to: When did mammoths go extinct?

Yucheng Wang , Ana Prohaska , Haoran Dong , Adriana Alberti , Inger Greve Alsos
Nature, 2022, 612 (7938), pp.E4-E6. ⟨10.1038/s41586-022-05417-2⟩
Journal articles hal-04242151v1
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Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Aurélie Canaguier , Romane Guilbaud , Erwan Denis , Ghislaine Magdelenat , Caroline Belser
BMC Genomics, 2022, 23 (1), pp.317. ⟨10.1186/s12864-022-08499-4⟩
Journal articles hal-03977388v1
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Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Jean-Marc Aury , Stefan Engelen , Benjamin Istace , Cécile Monat , Pauline Lasserre-Zuber
GigaScience, 2022, 11, pp.1-18. ⟨10.1093/gigascience/giac034⟩
Journal articles hal-03658639v1

Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans

Naama Lang-Yona , J. Michel Flores , Rotem Haviv , Adriana Alberti , Julie Poulain
Communications Earth & Environment, 2022, 3 (1), pp.121. ⟨10.1038/s43247-022-00441-6⟩
Journal articles hal-04382382v1
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Restructuring of plankton genomic biogeography in the surface ocean under climate change

Paul Frémont , Marion Gehlen , Mathieu Vrac , Jade Leconte , Tom O. Delmont
Nature Climate Change, 2022, 12 (4), pp.393-401. ⟨10.1038/s41558-022-01314-8⟩
Journal articles insu-03659872v1

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni
Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩
Journal articles hal-03872935v2
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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

Sarah Farhat , Phuong Le , Ehsan Kayal , Benjamin Noel , Estelle Bigeard
BMC Biology, 2021, 19 (1), ⟨10.1186/s12915-020-00927-9⟩
Journal articles hal-03114990v1
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Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Yucheng Wang , Mikkel Winther Pedersen , Inger Greve Alsos , Bianca de Sanctis , Fernando Racimo
Nature, 2021, 598 (7882), pp.634-640. ⟨10.1038/s41586-021-04016-x⟩
Journal articles hal-03431961v1
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Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant

Elise J Gay , Jessica L Soyer , Nicolas Lapalu , Juliette Linglin , Isabelle Fudal
BMC Biology, 2021, 19 (1), pp.e041118. ⟨10.1186/s12915-021-00989-3⟩
Journal articles hal-03190704v1
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Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

Benjamin Istace , Caroline Belser , Cyril Falentin , Karine Labadie , Franz Boideau
Biology, 2021, 10 (8), ⟨10.3390/biology10080732⟩
Journal articles hal-03318024v1
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Diversity and biogeography of bathyal and abyssal seafloor bacteria and archaea along a Mediterranean-Atlantic gradient

Blandine Trouche , Miriam Brandt , Caroline Belser , Covadonga Orejas , Stephane Pesant
Frontiers in Microbiology, 2021, 12, pp.702016. ⟨10.3389/fmicb.2021.702016⟩
Journal articles hal-03589735v1
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Population genomics of apricots unravels domestication history and adaptive events

Alexis Groppi , Shuo Liu , A. Cornille , David Tricon , Quynh Trang Bui
Nature Communications, 2021, 12 (1), pp.3956. ⟨10.1038/s41467-021-24283-6⟩
Journal articles hal-03282504v1
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Historical management of equine resources in France from the Iron Age to the Modern Period

Sébastien Lepetz , Benoît Clavel , Duha Alioğlu , Lorelei Chauvey , Stéphanie Schiavinato
Journal of Archaeological Science: Reports, 2021, 40 (B), pp.103250. ⟨10.1016/j.jasrep.2021.103250⟩
Journal articles hal-03431948v1
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The origins and spread of domestic horses from the Western Eurasian steppes

Pablo Librado , Naveed Khan , Antoine Fages , Mariya A Kusliy , Tomasz Suchan
Nature, 2021, 598 (7882), pp.634-640. ⟨10.1038/s41586-021-04018-9⟩
Journal articles hal-03425363v1

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean

Tom Delmont , Juan José Pierella Karlusich , Iva Veseli , Jessika Fuessel , A. Murat Eren
The International Society of Microbiologial Ecology Journal, 2021, 16 (4), pp.927-936. ⟨10.1038/s41396-021-01135-1⟩
Journal articles hal-03480646v1

Author Correction: A framework for in situ molecular characterization of coral holobionts using nanopore sequencing

Quentin Carradec , Julie Poulain , Emilie Boissin , Benjamin Hume , Christian Voolstra
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-81544-6⟩
Journal articles hal-03368783v1
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Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean

Marta Royo-Llonch , Pablo Sánchez , Clara Ruiz-González , Guillem Salazar , Carlos Pedrós-Alió
Nature Microbiology, 2021, 6 (12), pp.1561-1574. ⟨10.1038/s41564-021-00979-9⟩
Journal articles hal-03781908v1
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Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients.

Clemens Schauberger , Ronnie N. Glud , Bela Hausmann , Blandine Trouche , Lois Maignien
The International Society of Microbiologial Ecology Journal, In press, ⟨10.1038/s41396-021-01021-w⟩
Journal articles hal-03415694v1

Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding

Miriam Brandt , Blandine Trouche , Laure Quintric , Babett Günther , Patrick Wincker
Molecular Ecology Resources, 2021, 21 (6), pp.1904-1921. ⟨10.1111/1755-0998.13398⟩
Journal articles hal-04203425v1
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Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

Miriam I Brandt , Florence Pradillon , Blandine Trouche , Nicolas Henry , Cathy Liautard-Haag
Scientific Reports, 2021, 11 (1), pp.7856. ⟨10.1038/s41598-021-86396-8⟩
Journal articles hal-03198097v1
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Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing

Caroline Belser , Franc-Christophe Baurens , Benjamin Noel , Guillaume Martin , Corinne Cruaud
Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-021-02559-3⟩
Journal articles hal-03352701v1
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Environmental vulnerability of the global ocean epipelagic plankton community interactome

Samuel Chaffron , Erwan Delage , Marko Budinich , Damien Vintache , Nicolas Henry
Science Advances , 2021, 7 (35), pp.eabg1921. ⟨10.1126/sciadv.abg1921⟩
Journal articles hal-03443359v2
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Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes

Laurence Garczarek , Ulysse Guyet , Hugo Doré , Gregory Farrant , Mark Hoebeke
Nucleic Acids Research, 2021, 49 (D1), pp.D667-D676. ⟨10.1093/nar/gkaa958⟩
Journal articles hal-02988562v1
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Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids

Pierre Clavel , Jean Dumoncel , Clio Der Sarkissian , Andaine Seguin-Orlando , Laure Calvière-Tonasso
Journal of Archaeological Science, 2021, 131, pp.105383. ⟨10.1016/j.jas.2021.105383⟩
Journal articles hal-03413040v1
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Male differentiation in the marine Copepod Oithona nana reveals the development of a new nervous ganglion and Lin12-Notch-repeat protein-associated proteolysis

Kevin Sugier , Romuald Laso-Jadart , Benoît Vacherie , Jos Käfer , Laurie Bertrand
Biology, 2021, 10 (7), pp.657. ⟨10.3390/biology10070657⟩
Journal articles hal-03286235v1
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Macroscale patterns of oceanic zooplankton composition and size structure

Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-94615-5⟩
Journal articles hal-03318806v1
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Comparative genomics reveals new functional insights in uncultured MAST species

Aurelie Labarre , David López-Escardó , Francisco Latorre , Guy Leonard , François Bucchini
The International Society of Microbiologial Ecology Journal, 2021, 15 (6), pp.1767-1781. ⟨10.1038/s41396-020-00885-8⟩
Journal articles hal-04288985v1
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Juan José Pierella Karlusich , Eric Pelletier , Fabien Lombard , Madeline Carsique , Etienne Dvorak
Nature Communications, 2021, 12, pp.4160. ⟨10.1038/s41467-021-24299-y⟩
Journal articles hal-03334117v2

Author Correction: Macroscale patterns of oceanic zooplankton composition and size structure

Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson
Scientific Reports, 2021, 11 (1), pp.20226. ⟨10.1038/s41598-021-99772-1⟩
Journal articles hal-04394798v1
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An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities

Miriam Brandt , Blandine Trouche , Nicolas Henry , Cathy Liautard-Haag , Lois Maignien
Frontiers in Marine Science, 2020, 7, pp.234. ⟨10.3389/fmars.2020.00234⟩
Journal articles hal-03410860v1
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A framework for in situ molecular characterization of coral holobionts using nanopore sequencing

Quentin Carradec , Julie Poulain , Emilie Boissin , Benjamin Hume , Christian Voolstra
Scientific Reports, 2020, 10 (1), pp.15893. ⟨10.1038/s41598-020-72589-0⟩
Journal articles hal-02964556v1
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Long-read assembly of the Brassica napus reference genome Darmor-bzh

Mathieu Rousseau-Gueutin , Caroline Belser , Corinne Da silva , Gautier Richard , Benjamin Istace
GigaScience, 2020, 9 (12), pp.giaa137. ⟨10.1093/gigascience/giaa137⟩
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Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

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Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

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Scientific Reports, 2015, 5 (1), ⟨10.1038/srep11571⟩
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Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Guillaume Morel , Lieven Sterck , Dominique Swennen , Marina Marcet-Houben , Djamila Onesime
Scientific Reports, 2015, 5, ⟨10.1038/srep11571⟩
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Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

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Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus

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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

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Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

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The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants

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