
Patrick Wincker
460
Documents
Affiliation actuelle
- Laboratoire d'Analyses Génomiques des Eucaryotes (LAGE)
Identifiants chercheurs
Publications
Publications
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Plan de Gestion des Données : PEPR ATLASea : Atlas des génomes marinsZenodo. 2024
Rapport
(plan de gestion de données/data management plan)
hal-04709361
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ADN et ARN environnementaux : découverte et fonctionsColloque ADNe/ARNe L’ADN (ADNe) : marqueurs du vivant dans les écosystèmes, Académie d'Agriculture de France, Sep 2023, Paris, France
Communication dans un congrès
cea-04482722
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Role of cyanate lyase in low-nitrate acclimation in the picophytoplankton Pelagomonas calceolata8th European Phycological Congress, Aug 2023, Brest, France
Communication dans un congrès
hal-04406043
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European mink (Mustela lutreola) reference genome and population genomics34th European Mustelid Colloquium, Sep 2022, Online conference, France
Communication dans un congrès
hal-03787589
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High-quality genome assemblies of corals highlight the specifics of their long lifespanEAGS, France Génomique, Oct 2021, Tours (France), France
Communication dans un congrès
hal-04440766
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Disentangling the effects of genotype, environment, and symbiotype on coral holobiont gene expression across the PacificEnvironmental and Agronomical Genomics 2021 symposium, Oct 2021, Tours, France
Communication dans un congrès
hal-04410520
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La révolution génomique : de nouvelles approches pour étudier le vivantColloque AFBV 2021 : les biotechnologies végétales entre science et société, Association Française des Biotechnologies Végétales, Oct 2021, Paris, France
Communication dans un congrès
cea-04482731
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Global-scale functional genomic and population genetic analyses of Millepora, Pocillopora, and Porites coral host diversityInternational Coral Reef Society Symposium, Jul 2020, Bremen, France
Communication dans un congrès
hal-04406087
v1
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Genome-centered approaches for eukaryotes in complex microbial communitiesFourth Microbial Single Cell Genomics (SCGC) Workshop, Sep 2019, Boothbay Harbor, United States
Communication dans un congrès
cea-04482711
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Co-evolution of chloroplast and nuclear genomes in flowering plants and impact of allopolyploidy on fine tune cytonuclear interactions.International Conference on Polyploidy, Jun 2019, Ghent, Belgium
Communication dans un congrès
hal-03318182
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated wholegenome duplications21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint Malo, France
Communication dans un congrès
hal-04665569
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How build up soil bacterial co-occurrence networks from wide spatial scale sampling?JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Communication dans un congrès
hal-02953290
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Biogeographical design of soil microbial habitats5ème colloque du GDR de Génomique Environnementale, Oct 2019, La Rochelle, France
Communication dans un congrès
hal-02951841
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Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France
Communication dans un congrès
hal-03318226
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Challenges in the analysis of large-scale meta-omics data for marine eukaryotesGordon Research Conference- Marine Microbes, Gordon Research Conference, Jul 2018, Lucca (Barga), Italy
Communication dans un congrès
cea-04482704
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Innovative tools to diagnose the impact of land use practices on soil microbial communities21st World Congress of Soil Science, Aug 2018, Rio de Janeiro, Brazil. pp.96
Communication dans un congrès
hal-03103798
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The Pisum Genus: Getting out of Pea Soup!Plant and Animal Genome XXVI Conference, 2018, San Diego (CA), United States
Communication dans un congrès
hal-04331722
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How a polyploid becomes a new species: example from the Brassica model.International Conference on Environmental and Agronomical Genomics, 2018, Paris, France
Communication dans un congrès
hal-03318223
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Mapping, understanding and predicting soil microbial diversity across France21st World Congress of Soil Science, Aug 2018, Rio de Janeiro, Brazil
Communication dans un congrès
hal-03102542
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Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doublingSecond Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Communication dans un congrès
hal-03318235
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Bacterial social networks across the French National territoryJournée d’Ecologie Fonctionnelle AnaEE, AnaEE Analyses et Expérimentations sur les Ecosystèmes - France., Mar 2017, La Grande Motte, France
Communication dans un congrès
hal-01605623
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A transcriptomic approach to study marine plankton holobiontsInternational Conference on Holobionts, Apr 2017, Paris, France
Communication dans un congrès
hal-01575069
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The pea genome8. International Conference on Legume Genetics and Genomics (ICLGG), Noble Research Institute., Sep 2017, Siófok, Hungary. 128 p
Communication dans un congrès
hal-02735156
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Mapping and predictive variations of soil microbial richness, bacterial and archaeal phyla across France4. International Conference on Microbial Diversity 2017 (MD 2017), Oct 2017, Bari, Italy. pp.209-211
Communication dans un congrès
hal-02738142
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Bacterial "social" network in french soils : a Metagenomics insightJournée d’Ecologie Fonctionnelle AnaEE, AnaEE Analyses et Expérimentations sur les Ecosystèmes - France., Mar 2017, La Grande Motte, France
Communication dans un congrès
hal-01608367
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Soil bacterial interaction networks on a wide scale4. International Conference on Microbial Diversity 2017 (MD 2017), Oct 2017, Bari, Italy. pp.414-415
Communication dans un congrès
hal-02735708
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Le pois, espèce modèle ?1. Rencontres Francophones sur les Légumineuses (RFL1), Institut National de la Recherche Agronomique (INRA). FRA., May 2016, Dijon, France
Communication dans un congrès
hal-02741352
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Is soil an island for bacteria ? Contribution of the soil bacterial taxa area relationship unsing new generation sequencing16. International Symposium on Microbial Ecology - ISME16, International Society for Microbial Ecology (ISME). INT., Aug 2016, Montréal, Canada
Communication dans un congrès
hal-02798699
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Towards the genome sequence of pea : a tribute to Mendel2. International Legume Society Conference - Legumes for a Sustainable World, Legume Society., Oct 2016, Lisbone, Portugal. 358 p
Communication dans un congrès
hal-01602206
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Biogeographical patterns of soil bacterial diversity at the scale of France16. International Symposium on Microbial Ecology - ISME16, Aug 2016, Montréal, Canada
Communication dans un congrès
hal-01603633
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Oak genome sequencing and evolutionGenomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès
hal-02741698
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Sequencing and Analysis of Wheat Chromosome 1BPlant and Animal Genome XXIV Conference; IWGSC Standards and Protocoles Workshop, Jan 2016, San Diego, CA, United States
Communication dans un congrès
hal-02306172
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Towards the rose genome sequence and its use in research and breedingVI International Symposium on Rose Research and Cultivation, 2015, Hanovre, Germany. pp.167-175
Communication dans un congrès
hal-01393815
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Pea in the genomic eraSéminaire IFR AIB (Agrobiosciences, Interactions & Biodiversité), Feb 2015, Toulouse, France, 24 février 2015, France
Communication dans un congrès
hal-01536570
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Towards an universal genome-based DNA barcode-The PhyloAlps project6th International Barcode of Life Conference, Aug 2015, Guelph, Canada. pp.206-206
Communication dans un congrès
cea-04573288
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A reference sequence of wheat chromosome 3B3. Plant Genomics Congress, May 2015, London, United Kingdom
Communication dans un congrès
hal-02740971
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Pea genomic tools for functional and structural approachesMendel's legacy - 150 years of the genius of genetics, Masaryk University. CZE., Sep 2015, Brno, Czech Republic
Communication dans un congrès
hal-02743963
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Assembling a pseudomolecule for a wheat chromosome: the 3B experience22. Conference on Plant and Animal Genome, Jan 2014, San Diego, Californie, United States
Communication dans un congrès
hal-02743902
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A reference sequence of wheat chromosome 3B22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States
Communication dans un congrès
hal-02742303
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Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass familyRéunion du groupe « Cytogénétique et Polyploïdie », May 2014, Clermont-Ferrand, France
Communication dans un congrès
hal-01108395
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Le séquençage massif pour caractériser la diversité microbienne des sols, standardisation et applications au sein de la plateforme GenoSolColloque Etude du Polymorphisme des Génomes Végétaux (EPGV), Jun 2014, Évry, France
Communication dans un congrès
hal-02740417
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Pea in the genomic era2. Adam Kondorosi Symposium "Frontiers in Legume Biology",, Dec 2014, Gif-sur-Yvette, France
Communication dans un congrès
hal-02797923
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Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3BIWGSC Wheat Genome Sequencing Strategy and Funding Workshop, International Wheat Genome Sequencing Consortium (IWGSC). USA., Apr 2013, Evry, France
Communication dans un congrès
hal-02747374
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Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in the hexaploid Spartina maritime (Poaceae)Rencontres ALPHY/PhyloSIB, Feb 2013, Lyon, France
Communication dans un congrès
hal-01108442
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3BTGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom
Communication dans un congrès
hal-02809032
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Genomic resources for functional analysis in <em>Medicago truncatula</em> and related crop species6. International Conference on Legume Genetics and Genomics, International Crops Research Institute for the Semi-Arid Tropics, CGIAR (ICRISAT). Patancheru, IND., Oct 2012, Hyderabad, India
Communication dans un congrès
hal-02747944
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Apport des nouvelles générations de séquençage pour accéder à la diversité et la richesse des communautés microbiennes de sols issus d'échantillonnage de grande ampleurEcole Thématique Expert Génomique Environnementale ETEGE, Apr 2012, Aussois, France
Communication dans un congrès
hal-01208719
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Towards a reference sequence of the 1 Gb wheat chromosome 3B16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, Floride, United States
Communication dans un congrès
hal-02807639
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Influence of Soil DNA Extraction Procedure to Assess Bacterial Diversity using Pyrosequencing of 16S rDNANENUN ISME-Workshop: Extraction of Microbial DNA & RNA in Environmental Samples, Aug 2012, Copenhague, Denmark
Communication dans un congrès
hal-01208718
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Ecological genomics of invasive polyploids: Case study from hexaploid and allo-dodecaploid Spartina species colonizing salt marshesInternational Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Pruhonice, Czech Republic
Communication dans un congrès
hal-01108907
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GENOTROUT - Apport des nouvelles technologies de séquençage (NGS) à l'analyse du génome de la truite arc-en-ciel (2010-2013)9. Colloque Agenae/ANR, Mar 2012, La Rochelle, France. pp.18
Communication dans un congrès
hal-01019800
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Apport des nouvelles générations de séquençage pour accéder à la diversité des communautés microbiennes du sol : nécessité d’un ‘pipeline’ bio-informatique pour les biologistesJournées d'animation "MEM Days" organisées par l'INRA, Jan 2012, Ecully, France
Communication dans un congrès
hal-02809171
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Development of genomic resources for <em>Medicago truncatula</em> and related legume cropsModel Legume Congress 2011, Institut National Polytechnique (Toulouse) (Toulouse INP). Castanet Tolosan, FRA., May 2011, Sainte Maxime, France
Communication dans un congrès
hal-02746654
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Influence of Soil DNA Extraction Procedure to Assess Bacterial Diversity using Pyrosequencing of 16S rDNA6. ISMOM: International Symposium of Interactions of Soil Minerals withOrganic Components and Microorganisms.3. InterCongress of Commission 2.5 IUSSSoil chemical, physical and biological interfacial reactions, Labo/service de l'auteur, Ville service, Pays service., Jun 2011, Montpellier, France
Communication dans un congrès
hal-02746836
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Comparative genomics of the Nakaseomyces clade: Candida glabrata and enew merging pathogensComparative Genomics of Eukaryotic Microorganisms,, Oct 2011, Sant Feliu de Guixols, Spain
Communication dans un congrès
hal-00674241
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Report on sequencing the wheat chromosome 3B19. Plant and Animal Genome Conference, Jan 2011, San Diego, Californie, United States. 1 p
Communication dans un congrès
hal-02808854
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Vers la caractérisation des compartiments codant et répété du génome des spartines polyploïdes par séquençage en masseColloque « Biodiversité, Histoire des Espèces, Evolution des Génomes », Jun 2011, Rennes, France
Communication dans un congrès
hal-01108953
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Sequencing and Analyses of the Hexaploid Wheat Chromosome 3B19. Conference on Plant and Animal Genome, Jan 2011, San Diego, CA, United States
Communication dans un congrès
hal-02747876
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Nature, nurture and the structure of macroalgal genomes5. European Phycological Congress, Sep 2011, Rhodes, Greece
Communication dans un congrès
hal-02749757
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Naissance et diversification des effecteurs dans les génomes fongiques: le projet ANR FungIsochore8. Rencontres de Phytopathologie - Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Ausois, France
Communication dans un congrès
hal-02753379
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Bioinformatic analysis of Sanger and 454 ESTs in oakConference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73
Communication dans un congrès
hal-00964385
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Sequencing and analyses of the hexaploid wheat chromosome 3B10. conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom
Communication dans un congrès
hal-02753841
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GENOTROUT - Apport des nouvelles technologies de séquençage (NGS) à l'analyse du génome pseudotétraploide de la truite arc-en-ciel (2010-2012)8. Journées AGENAE, Nov 2010, Bordeaux, France
Communication dans un congrès
hal-01193660
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Development of resources for comparative physical mapping between Muscadinia rotundifolia and Vitis vinifera6. International Workshop of Grapevine Downy and Powdery Mildew. GDPM 2010, Jul 2010, BORDEAUX, France
Communication dans un congrès
hal-02754937
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AT-rich isochores as ecological niches for effectors in the genome of Leptosphaeria maculans14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Quebec City, Canada
Communication dans un congrès
hal-02756559
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Towards sequencing the 1 Gb wheat chromosome 3B1. Workshop of StatSeq COST Action TD0801, Oct 2009, Barcelona, Spain
Communication dans un congrès
hal-02818225
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Development of genomic resources in oak to study the structure, variability, evolution and functioning of its genomeInternational Plant & Animal genomes XV Conferences, Jan 2007, San Diego, United States
Communication dans un congrès
hal-00337980
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A SNP detection project using one million reads from WGS libraries produced from one pig from seven different breeds.International Plant & Animal Genomes XV Conference, San Diego, 2007, California, France
Communication dans un congrès
hal-02751166
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Prospective scientifique pour la recherche française sur la biodiversité - 2023Fondation pour la Recherche sur la Biodiversité, 50 p., 2023, 979-10-91015-66-0
Ouvrages
hal-04637987
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Transcriptomic response of the picophytoplankton Pelagomonas calceolata to nitrogen depleted environmentsResilience and Recovery in Aquatic Systems, Jun 2023, Palma de Mallorca, Spain
Poster de conférence
hal-04405314
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Ocean-wide comparisons of plankton composition clarify differences in the structure and regulation of mesopelagic communities18th International Symposium on Microbial Ecology, Oct 2022, Lausanne ( CH), Switzerland.
Poster de conférence
hal-04391705
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Genomic adaptation of Pelagomonas calceolata to temperate iron-poor oceans revealed by a chromosome-scale assembled genomeEnvironmental and Agronomical Genomics 2021 symposium, Oct 2021, Tours, France
Poster de conférence
hal-04410501
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Transcriptional and functional analyses of Symbiodiniaceae across the Pacific OceanInternational Coral Reef Society Symposium, Jul 2020, Bremen, Germany
Poster de conférence
hal-04405200
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LONG DNA TECHNOLOGIES EVALUATION FOR PLANT STRUCTURAL VARIATIONS DETECTION : NANOPORE ONT SEQUENCING vs BIONANO GENOMICS OPTICAL MAPPINGPlant and Animal Genome XXVIII Conference, Jan 2020, San Diego, United States.
Poster de conférence
hal-02925940
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Long DNA technologies evaluation for plant structural variations detection: Nanopore ONT sequencing vs Bionano Genomics optical mapping- Plant and Animal Genome XXVIII Conference, 2020, San Diego, CA, United States
Poster de conférence
hal-04331757
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Transcriptional activity of coral holobiont eukaryotes in the framework of Tara Pacific expeditionMarine Molecular Ecology, Jul 2019, Hong-Kong, China
Poster de conférence
hal-04405109
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Genome skimming at the scale of the whole Alpine ecosystem : insights into genome size, gene family amplifications and functional signaturesConference on Plant Genome Evolution, Sep 2019, Sitges, Spain
Poster de conférence
hal-04440668
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Chromosome-scale assemblies of Brassica oleracea and Brassica rapa using nanopore long reads and optical maps21st Crucifer Genetics Conference on Brassica - Bassica 2018, Jul 2018, Saint-Malo, France
Poster de conférence
hal-03318378
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Comparative approaches for metagenomic biogeography and population structures of eukaryotes4th Environmental Genomics symposium, Sep 2017, Marseille, France
Poster de conférence
hal-04391650
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Contrasting Spatial Patterns and Ecological Attributes of Soil Bacterial Taxa across French National TerritoryJournée d’Ecologie Fonctionnelle AnaEE, Mar 2017, La Grande Motte, France. , 2017
Poster de conférence
hal-01605429
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Contrasting Spatial Patterns and Ecological Attributes of Soil Bacterial Taxa across French National TerritoryCongrès de la Société Française d'Ecologie, Oct 2016, Marseille, France. 2016
Poster de conférence
hal-01602852
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Pea Genomics : What Else ?ASA-CSSA-SSSA Meeting “Resilience Emerging from Scarcity and Abundance”, Nov 2016, Phoenix, United States. ASA CSSA SSSA Annual Meeting Presentations, 2016, ASA CSSA SSSA Annual Meeting Presentations
Poster de conférence
hal-01607090
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Genome assembly using Nanopore-guided Long and Error-free DNA readsJournées Ouvertes en Biologie, Informatique et Mathématiques 2015, Jul 2015, Clermont-Ferrand, France
Poster de conférence
hal-04862540
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Impact of meiotic recombination on gene admixture for wheat improvement9. International Wheat Conference, Sep 2015, Sydney, Australia. 195 p., 2015, 9th International Wheat Conference 20-25 September 2015, Sydney, Australia : Program and Abstracts
Poster de conférence
hal-02741010
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Recent pea genomic resources will enhance complementary improvement strategies in this crop6. International Food Legumes Research Conference (IFLRC VI), Jul 2014, Saskatoon, Canada. , 225 p., 2014
Poster de conférence
hal-02743375
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Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass familyInternational Conference on Invasive Spartina 2014, Jul 2014, Rennes, France. , 1 p., 2014
Poster de conférence
hal-01109652
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The hexaploid Spartina maritime (Poaceae, Chloridoidea) genome: Composition and evolution in the grass familyPlant Genome Evolution Meeting, Sep 2013, Amsterdam, Netherlands. , 2013
Poster de conférence
hal-01110188
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Genome and transcriptome analyses in hexaploid Spartina species (Poaceae) colonizing salt marshesPAG XIX Plant and Animal Genome Conference, Jan 2012, San Diego, United States
Poster de conférence
hal-01110212
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Deep sequencing of 16S rRNA gene to efficiently assess bacterial richness and the rare biosphere in soils14. International Symposium on Microbial Ecology (ISME 14), Aug 2012, Copenhague, Danemark, Netherlands. 1 p., 2012
Poster de conférence
hal-02806957
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Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in hexaploid Spartina species (Poaceae)International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Prague, Czech Republic
Poster de conférence
hal-01110201
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Genetic diversity of Tuber aestivum / uncinatumALPHY Meeting, Mar 2012, Banyuls sur Mer, France. , 2012
Poster de conférence
hal-01268765
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Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des sols5ième colloque de l’Association Francophone Ecologie Microbienne (AFEM), Nov 2011, Hammamet, Tunisie. , 1 p., 2011
Poster de conférence
hal-02808211
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Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des solsColloque Génomique Environnementale, Nov 2011, Ecully, France. , 1 p., 2011
Poster de conférence
hal-02807955
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The complete genome of Propionibacterium freudenreichii CIRM 1 a hardy actinobacteria with food and probiotic applications3 International Symposium on Propionibacteria and Bifidobacteria: Dairy and Probiotic, Jun 2010, Oviédo, Spain. , International Journal of Food Microbiology, Volume 149, Issue 1, Pages 1-112 (1 September 2011), 2010, International Journal of Food Microbiology
Poster de conférence
hal-01454344
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TARA Pacific bleaching prevalence of sampling sites (Islands)2022, ⟨10.5281/zenodo.6511406⟩
Autre publication scientifique
hal-04384087
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TARA Pacific CTAX colony morphological annotations release version 1_12022, ⟨10.5281/zenodo.6384774⟩
Autre publication scientifique
hal-04384090
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Tara Pacific V9 18S rDNA metabarcoding dataset2021, ⟨10.5281/zenodo.5041070⟩
Autre publication scientifique
hal-04384095
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Tara Pacific 16S rRNA data analysis release2020, ⟨10.5281/ZENODO.4073269⟩
Autre publication scientifique
hal-04384109
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Tara Pacific metabarcoding sequencing (16S, 18S, ITS2) reference & replication tables version 12020, ⟨10.5281/ZENODO.4073035⟩
Autre publication scientifique
hal-04384100
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Tara Pacific ITS2 Symbiodiniaceae data release version 12020, ⟨10.5281/zenodo.4061797⟩
Autre publication scientifique
hal-04384112
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Tara Pacific 18S-based coral host genetic analysis data release version 12020, ⟨10.5281/zenodo.4265266⟩
Autre publication scientifique
hal-04384097
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Génétique et génomique du pois : what else ?Société Nationale d'Horticulture de France, pp.33-37, 2016, 978-2-913793-16-3
Proceedings/Recueil des communications
hal-02794125
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Whole genome sequencing projects of the plant pathogenic fungi Botrytis Cinerea and Sclerotinia SclerotiorumMacromolecules and secondary metabolites of grapevine and wine : fruit development, biotic and abiotic stresses, mechanisms of plant defense responses, proteins, glycoproteins, polysaccharides, polyphenolics, aroma compounds and secondar, EDITIONS TEC ET DOC, 2007, 978-2-7430-0965-9
Chapitre d'ouvrage
hal-02820038
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