Patrick Wincker

460
Documents
Affiliation actuelle
  • Laboratoire d'Analyses Génomiques des Eucaryotes (LAGE)

Publications

Publications

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Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors

Guillaume Martin , Benjamin Istace , Franc-Christophe Baurens , Caroline Belser , Catherine Hervouet et al.
Nature Communications, 2025, 16, pp.961. ⟨10.1038/s41467-025-56329-4⟩
Article dans une revue hal-04911301 v1
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Genome sequences of four Ixodes species expands understanding of tick evolution

Alexandra Cerqueira de Araujo , Benjamin Noël , Anthony Bretaudeau , Karine Labadie , Matéo Boudet et al.
BMC Biology, 2025, 23, pp.17. ⟨10.1186/s12915-025-02121-1⟩
Article dans une revue hal-04707197 v1

First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples

Christina Pavloudi , Ioulia Santi , Iñigo Azua , Zuriñe Baña , Mauro Bastianini et al.
Biodiversity Data Journal, 2025, 13, ⟨10.3897/BDJ.13.e143585⟩
Article dans une revue (data paper) cea-05046943 v1
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On the way to diploidization and unexpected ploidy in the grass Sporobolus section Spartina mesopolyploids

Armel Salmon , Yan Hao , Morgane Milin , Oscar Lima , Armand Cave-Radet et al.
Nature Communications, 2025, 16 (1), pp.1997. ⟨10.1038/s41467-025-56983-8⟩
Article dans une revue hal-04976572 v1

Transcriptomic response of the picoalga Pelagomonas calceolata to nitrogen availability: new insights into cyanate lyase function

Nina Guérin , Chloé Seyman , Céline Orvain , Laurie Bertrand , Priscillia Gourvil et al.
Microbiology Spectrum, 2025, ⟨10.1128/spectrum.02654-24⟩
Article dans une revue cea-05010706 v1
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Emergent patterns of patchiness differ between physical and planktonic properties in the ocean

Patrick Clifton Gray , Emmanuel Boss , Guillaume Bourdin , A Bourdais , C Bowler et al.
Nature Communications, 2025, 16 (1), pp.1808. ⟨10.1038/s41467-025-56794-x⟩
Article dans une revue hal-04976225 v1

Straight from the Horse’s Mouth: Timing and Zoogeography of Domesticated Horse Arrivals in Mongolia and China

William Honeychurch , Rong Fan , Leland Rogers , Mark E. Hall , Chunag Amartuvshin et al.
Journal of Archaeological Method and Theory, 2025, 32 (1), pp.27. ⟨10.1007/s10816-024-09691-4⟩
Article dans une revue cea-05047023 v1
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Unraveling biogeographical patterns and environmental drivers of soil fungal diversity at the French national scale

Christophe Djemiel , Samuel Dequiedt , Walid Horrigue , Arthur Bailly , Mélanie Lelièvre et al.
Soil, 2024, 10 (1), pp.251-273. ⟨10.5194/soil-10-251-2024⟩
Article dans une revue hal-04874922 v1
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Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

France Denoeud , Olivier Godfroy , Corinne Cruaud , Svenja Heesch , Zofia Nehr et al.
Cell, In press, 187 (24), pp.6943-+. ⟨10.1016/j.cell.2024.10.049⟩
Article dans une revue hal-04794231 v1

Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

France Denoeud , Olivier Godfroy , Corinne Cruaud , Svenja Heesch , Zofia Nehr et al.
Cell, 2024, 187 (24), pp.6943-6965.e39. ⟨10.1016/j.cell.2024.10.049⟩
Article dans une revue hal-05027497 v1
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Sea surface temperature reconstruction in the Pacific Ocean using multi-elemental proxy in Porites and Diploastrea corals: Application to Palau Archipelago

Marine Canesi , Éric Douville , Paolo Montagna , Louise Bordier , Sandrine Caquineau et al.
Chemical Geology, 2024, 645, pp.121884. ⟨10.1016/j.chemgeo.2023.121884⟩
Article dans une revue hal-04337163 v1
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Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

Ana Paula Zotta Mota , Georgios Koutsovoulos , Laetitia Perfus-Barbeoch , Evelin Despot-Slade , Karine Labadie et al.
Nature Communications, 2024, 15 (1), pp.773. ⟨10.1038/s41467-024-44914-y⟩
Article dans une revue hal-04489824 v1

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Ann Mc Cartney , Giulio Formenti , Alice Mouton , Diego de Panis , Luísa Marins et al.
npj Biodiversity, 2024, 3 (1), pp.28. ⟨10.1038/s44185-024-00054-6⟩
Article dans une revue hal-04733220 v1
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Genome-wide population affinities and signatures of adaptation in hydruntines, sussemiones and Asian wild asses

Jianfei Pan , Xuexue Liu , Mateusz Baca , Laure Calvière-Tonasso , Stéphanie Schiavinato et al.
Molecular Ecology, 2024, 33 (19), pp.e17527. ⟨10.1111/mec.17527⟩
Article dans une revue hal-04729863 v1

High altitude horse use and early horse transport in eastern Eurasia: New evidence from melting ice

William Timothy Treal Taylor , Isaac Hart , Tumurbaatar Tuvshinjargal , Jamsranjav Bayarsaikhan , Nicholas Jarman et al.
The Holocene, 2024, 34 (9), pp.1204-1213. ⟨10.1177/09596836241254484⟩
Article dans une revue hal-04780801 v1
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The genome of the simultaneously hermaphroditic snail Lymnaea stagnalis reveals an evolutionary expansion of FMRFamide-like receptors

Joris M Koene , Daniel J. Jackson , Yumi Nakadera , Nicolas Cerveau , Mohammed‐amin Madoui et al.
Scientific Reports, 2024, 14 (1), pp.29213. ⟨10.1038/s41598-024-78520-1⟩
Article dans une revue hal-04465013 v2
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Widespread horse-based mobility arose around 2,200 BCE in Eurasia

Pablo Librado , Gaetan Tressières , Lorelei Chauvey , Antoine Fages , Naveed Khan et al.
Nature, 2024, 631 (8022), ⟨10.1038/s41586-024-07597-5⟩
Article dans une revue hal-04607980 v1
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Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions

Clemens Schauberger , Bo Thamdrup , Clarisse Lemonnier , Blandine Trouche , Julie Poulain et al.
ISME Communications, 2024, 4 (1), pp.ycad005. ⟨10.1093/ismeco/ycad005⟩
Article dans une revue hal-04492228 v1
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Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals

Alice Rouan , Mélanie Pousse , Nadir Djerbi , Barbara Porro , Guillaume Bourdin et al.
Nature Communications, 2023, 14 (1), pp.3038. ⟨10.1038/s41467-023-38499-1⟩
Article dans une revue cea-04171809 v1
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Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation

Christian R Voolstra , Benjamin C C Hume , Eric J Armstrong , Guinther Mitushasi , Barbara Porro et al.
npj Biodiversity, 2023, 2 (1), pp.15. ⟨10.1038/s44185-023-00020-8⟩
Article dans une revue hal-04157744 v1
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Early dispersal of domestic horses into the Great Plains and northern Rockies

William Timothy Treal Taylor , Pablo Librado , Mila Hunska Tašunke Icu , Carlton Shield Chief Gover , Jimmy Arterberry et al.
Science, 2023, 379 (6639), pp.1316-1323. ⟨10.1126/science.adc9691⟩
Article dans une revue hal-04065852 v1
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Mirusviruses link herpesviruses to giant viruses

Morgan Gaïa , Lingjie Meng , Eric Pelletier , Patrick Forterre , Chiara Vanni et al.
Nature, 2023, 616 (7958), pp.783-789. ⟨10.1038/s41586-023-05962-4⟩
Article dans une revue pasteur-04085734 v1
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The defensome of complex bacterial communities

Angelina Beavogui , Auriane Lacroix , Nicolas Wiart , Julie Poulain , Tom O Delmont et al.
Nature Communications, 2023, 15, pp.2146. ⟨10.1101/2023.08.12.553040⟩
Article dans une revue hal-04406189 v2
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Diversity of the Pacific Ocean coral reef microbiome

Pierre Galand , Hans-Joachim Ruscheweyh , Guillem Salazar , Corentin Hochart , Nicolas Henry et al.
Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩
Article dans une revue hal-04176291 v1
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Imputed genomes of historical horses provide insights into modern breeding

Evelyn T Todd , Aurore Fromentier , Richard Sutcliffe , Yvette Running , Horse Collin et al.
iScience, 2023, 26 (7), pp.107104. ⟨10.1016/j.isci⟩
Article dans une revue hal-04242127 v1
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Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation

Isabel Sanz-Sáez , Pablo Sánchez , Guillem Salazar , Shinichi Sunagawa , Colomban de Vargas et al.
ISME Communications, 2023, 3 (1), ⟨10.1038/s43705-023-00290-0⟩
Article dans une revue cea-04481824 v1
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Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes

Ferdinand Marlétaz , Arnaud Couloux , Julie Poulain , Karine Labadie , Corinne da Silva et al.
Cell Genomics, 2023, 3 (4), pp.100295. ⟨10.1016/j.xgen.2023.100295⟩
Article dans une revue (data paper) hal-04093287 v1

Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov et al.
Life Science Alliance, 2023, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Article dans une revue (article de synthèse) cea-04321515 v1
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DNA methylation-based profiling of horse archaeological remains for age-at-death and castration

Xuexue Liu , Andaine Seguin- Orlando , Lorelei Chauvey , Gaëtan Tressières , Laure Tonasso-Calvie et al.
iScience, 2023, 26 (3), pp.106144. ⟨10.1016/j.isci.2023.106144⟩
Article dans une revue cea-04286440 v1
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Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean

Eric J Armstrong , Julie Lê-Hoang , Quentin Carradec , Jean-Marc Aury , Benjamin Noel et al.
Nature Communications, 2023, 14, pp.3056. ⟨10.1038/s41467-023-38610-6⟩
Article dans une revue cea-04171796 v1
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Pervasive tandem duplications and convergent evolution shape coral genomes

Benjamin Noel , France Denoeud , Alice Rouan , Carol Buitrago-López , Laura Capasso et al.
Genome Biology, 2023, 24 (1), pp.123. ⟨10.1186/s13059-023-02960-7⟩
Article dans une revue hal-04117388 v1
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Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean

Maggie M Reddy , Corentine Goossens , Yuxiang Zhou , Slimane Chaib , Delphine Raviglione et al.
Communications Earth & Environment, 2023, 4 (1), pp.281. ⟨10.1038/s43247-023-00942-y⟩
Article dans une revue hal-04184949 v1

Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood

Stefanie Wagner , Andaine Seguin-Orlando , Jean-Charles Leplé , Thibault Leroy , Céline Lalanne et al.
Molecular Ecology, 2023, 33 (3), ⟨10.1111/mec.16859⟩
Article dans une revue hal-04717422 v1
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Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies

Hugo Doré , Ulysse Guyet , Jade Leconte , Gregory Farrant , Benjamin Alric et al.
The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩
Article dans une revue hal-04238382 v2
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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Caroline Belser , Julie Poulain , Karine Labadie , Frederick Gavory , Adriana Alberti et al.
Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩
Article dans une revue hal-04176297 v3
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Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes

Alex Veglia , Kalia Bistolas , Christian Voolstra , Benjamin Hume , Hans-Joachim Ruscheweyh et al.
Communications Biology, 2023, 6 (1), pp.566. ⟨10.1038/s42003-023-04917-9⟩
Article dans une revue hal-04176296 v2
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Pan-Arctic plankton community structure and its global connectivity

Federico M Ibarbalz , Nicolas Henry , Frédéric Mahé , Mathieu Ardyna , Adriana Zingone et al.
Elementa: Science of the Anthropocene, 2023, 11 (1), pp.00060. ⟨10.1525/elementa.2022.00060⟩
Article dans une revue hal-04267640 v1
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Differences in carbonate chemistry up-regulation of long-lived reef-building corals

Marine Canesi , Éric Douville , Paolo Montagna , Marco Taviani , Jarosław Stolarski et al.
Scientific Reports, 2023, 13 (1), pp.11589. ⟨10.1038/s41598-023-37598-9⟩
Article dans une revue cea-04170119 v1
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Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Fabien Lombard , Guillaume Bourdin , Stéphane Pesant , Sylvain Agostini , Alberto Baudena et al.
Scientific Data , 2023, 10 (1), pp.324. ⟨10.1038/s41597-022-01757-w⟩
Article dans une revue hal-04164118 v1
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Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich et al.
ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩
Article dans une revue hal-04184772 v1
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Mission Tara Microplastics: a holistic set of protocols and data resources for the field investigation of plastic pollution along the land-sea continuum in Europe

Jean-François Ghiglione , Valérie Barbe , Stéphane Bruzaud , Gaëtan Burgaud , Jérôme Cachot et al.
Environmental Science and Pollution Research, 2023, ⟨10.1007/s11356-023-26883-9⟩
Article dans une revue hal-04302147 v1
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Predicting global distributions of eukaryotic plankton communities from satellite data

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé et al.
ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩
Article dans une revue hal-04394784 v1
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Different environmental response strategies in sympatric corals from Pacific Islands

Barbara Porro , Thamilla Zamoum , Didier Forcioli , Eric Gilson , Adrien Poquet et al.
Communications Earth & Environment, 2023, 4 (1), pp.311. ⟨10.1038/s43247-023-00946-8⟩
Article dans une revue hal-04205154 v1
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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

Corentin Hochart , Lucas Paoli , Hans-Joachim Ruscheweyh , Guillem Salazar , Emilie Boissin et al.
Nature Communications, 2023, 14 (1), pp.3037. ⟨10.1038/s41467-023-38502-9⟩
Article dans une revue hal-04176293 v1
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Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments

Blandine Trouche , Clemens Schauberger , Feriel Bouderka , Jean-Christophe Auguet , Caroline Belser et al.
ISME Communications, 2023, 3 (1), pp.133. ⟨10.1038/s43705-023-00341-6⟩
Article dans une revue hal-04388214 v1
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Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Jean-Marc Aury , Stefan Engelen , Benjamin Istace , Cécile Monat , Pauline Lasserre-Zuber et al.
GigaScience, 2022, 11, pp.1-18. ⟨10.1093/gigascience/giac034⟩
Article dans une revue hal-03658639 v1
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Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Aurélie Canaguier , Romane Guilbaud , Erwan Denis , Ghislaine Magdelenat , Caroline Belser et al.
BMC Genomics, 2022, 23 (1), pp.317. ⟨10.1186/s12864-022-08499-4⟩
Article dans une revue hal-03977388 v1

Reply to: When did mammoths go extinct?

Yucheng Wang , Ana Prohaska , Haoran Dong , Adriana Alberti , Inger Greve Alsos et al.
Nature, 2022, 612 (7938), pp.E4-E6. ⟨10.1038/s41586-022-05417-2⟩
Article dans une revue hal-04242151 v1

Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans

Naama Lang-Yona , J. Michel Flores , Rotem Haviv , Adriana Alberti , Julie Poulain et al.
Communications Earth & Environment, 2022, 3 (1), pp.121. ⟨10.1038/s43247-022-00441-6⟩
Article dans une revue hal-04382382 v1
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Restructuring of plankton genomic biogeography in the surface ocean under climate change

Paul Frémont , Marion Gehlen , Mathieu Vrac , Jade Leconte , Tom O. Delmont et al.
Nature Climate Change, 2022, 12 (4), pp.393-401. ⟨10.1038/s41558-022-01314-8⟩
Article dans une revue insu-03659872 v1
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni et al.
Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩
Article dans une revue hal-03872935 v2

Historical management of equine resources in France from the Iron Age to the Modern Period: a cross disciplinary approach

Pierre Clavel , Jean Dumoncel , Clio Der Sarkissian , Andaine Seguin-Orlando , Laure Calvière-Tonasso et al.
Bulletins et Mémoires de la Société d'anthropologie de Paris, 2022, 34 ((S)), pp.4627-4647. ⟨10.4000/bmsap.8460⟩
Article dans une revue hal-05023241 v1
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A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Juan José Pierella Karlusich , Eric Pelletier , Lucie Zinger , Fabien Lombard , Adriana Zingone et al.
Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩
Article dans une revue hal-03559541 v1

Biosynthetic potential of the global ocean microbiome

Lucas Paoli , Hans-Joachim Ruscheweyh , Clarissa Forneris , Florian Hubrich , Satria Kautsar et al.
Nature, 2022, 607 (7917), pp.111-118. ⟨10.1038/s41586-022-04862-3⟩
Article dans une revue hal-04376240 v1

ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications

Charles Pouchon , Frédéric Boyer , Cristina Roquet , France Denoeud , Jérôme Chave et al.
Molecular Ecology Resources, 2022, 22 (5), pp.2018-2037. ⟨10.1111/1755-0998.13584⟩
Article dans une revue hal-03839343 v1
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Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Tristan Cordier , Inès Barrenechea Angeles , Nicolas Henry , Franck Lejzerowicz , Cédric Berney et al.
Science Advances , 2022, 8 (5), ⟨10.1126/sciadv.abj9309⟩
Article dans une revue hal-03561462 v1
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Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

Richard Dorrell , Alan Kuo , Zoltan Füssy , Elisabeth Richardson , Asaf Salamov et al.
Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩
Article dans une revue hal-03859139 v1
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The genomic history and global expansion of domestic donkeys

Evelyn Todd , Laure Tonasso-Calvière , Loreleï Chauvey , Stéphanie Schiavinato , Antoine Fages et al.
Science, 2022, 377 (6611), pp.1172-1180. ⟨10.1126/science.abo3503⟩
Article dans une revue hal-03827857 v1

High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change

Sandra Garcés-Pastor , Eric Coissac , Sébastien Lavergne , Christoph Schwörer , Jean-Paul Theurillat et al.
Nature Communications, 2022, 13 (1), pp.6559. ⟨10.1038/s41467-022-34010-4⟩
Article dans une revue hal-04757586 v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas et al.
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Article dans une revue hal-03781942 v1
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Author Correction: Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Yucheng Wang , Mikkel Winther Pedersen , Inger Greve Alsos , Bianca de Sanctis , Fernando Racimo et al.
Nature, 2022, 603, pp.E31-E31. ⟨10.1038/s41586-022-04628-x⟩
Article dans une revue insu-03745285 v1
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Diversity and evolution of pigment types in marine $Synechococcus$ cyanobacteria

Théophile Grébert , Laurence Garczarek , Vincent Daubin , Florian Humily , Dominique Marie et al.
Genome Biology and Evolution, 2022, 14 (4), pp.evac035. ⟨10.1093/gbe/evac035⟩
Article dans une revue hal-03641745 v1
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Genomic adaptation of the picoeukaryote $Pelagomonas\ calceolata$ to iron-poor oceans revealed by a chromosome-scale genome sequence

Nina Guérin , Marta Ciccarella , Elisa Flamant , Paul Frémont , Sophie Mangenot et al.
Communications Biology, 2022, 5 (1), pp.983. ⟨10.1038/s42003-022-03939-z⟩
Article dans une revue cea-03791710 v1
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Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France

Benoît Clavel , Sébastien Lepetz , Loreleï Chauvey , Stéphanie Schiavinato , Laure Tonasso-Calvière et al.
Journal of Archaeological Science: Reports, 2022, 41, pp.103341. ⟨10.1016/j.jasrep.2022.103341⟩
Article dans une revue halshs-03755076 v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont et al.
eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩
Article dans une revue hal-02399723 v2

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo et al.
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Article dans une revue hal-03872940 v1
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Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo et al.
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Article dans une revue hal-03781924 v1
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Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei

Adrien Tran Y. Lu , Stephanie Ruault , Claire Daguin-Thiébaut , Jade Castel , Nicolas Bierne et al.
Molecular Ecology, 2022, 31 (10), pp.2796-2813. ⟨10.1111/mec.16430⟩
Article dans une revue hal-03669635 v1
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Diversity and ecological footprint of Global Ocean RNA viruses

Guillermo Dominguez-Huerta , Ahmed Zayed , James Wainaina , Jiarong Guo , Funing Tian et al.
Science, 2022, 376 (6598), pp.1202-1208. ⟨10.1126/science.abn6358⟩
Article dans une revue hal-03781935 v1
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Comparative genomics reveals new functional insights in uncultured MAST species

Aurelie Labarre , David López-Escardó , Francisco Latorre , Guy Leonard , François Bucchini et al.
The International Society of Microbiologial Ecology Journal, 2021, 15 (6), pp.1767-1781. ⟨10.1038/s41396-020-00885-8⟩
Article dans une revue hal-04288985 v1
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Male differentiation in the marine Copepod Oithona nana reveals the development of a new nervous ganglion and Lin12-Notch-repeat protein-associated proteolysis

Kevin Sugier , Romuald Laso-Jadart , Benoît Vacherie , Jos Käfer , Laurie Bertrand et al.
Biology, 2021, 10 (7), pp.657. ⟨10.3390/biology10070657⟩
Article dans une revue hal-03286235 v1
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Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids

Pierre Clavel , Jean Dumoncel , Clio Der Sarkissian , Andaine Seguin-Orlando , Laure Calvière-Tonasso et al.
Journal of Archaeological Science, 2021, 131, pp.105383. ⟨10.1016/j.jas.2021.105383⟩
Article dans une revue hal-03413040 v1
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Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes

Laurence Garczarek , Ulysse Guyet , Hugo Doré , Gregory Farrant , Mark Hoebeke et al.
Nucleic Acids Research, 2021, 49 (D1), pp.D667-D676. ⟨10.1093/nar/gkaa958⟩
Article dans une revue hal-02988562 v1
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Juan José Pierella Karlusich , Eric Pelletier , Fabien Lombard , Madeline Carsique , Etienne Dvorak et al.
Nature Communications, 2021, 12, pp.4160. ⟨10.1038/s41467-021-24299-y⟩
Article dans une revue hal-03334117 v2
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The complete genome of Propionibacterium freudenreichii CIRM-BIA1T, a Hardy actinobacterium with food and probiotic applications

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A Plasmodium Falciparum FcB1-Schizont-EST Collection Providing Clues to Schizont Specific Gene Structure and Polymorphism

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Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase

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The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii

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Genome Biology, 2008, 9 (12), ⟨10.1186/gb-2008-9-12-r175⟩
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A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.

Lucie Hanriot , Céline Keime , Nadine Gay , Claudine Faure , Carole Dossat et al.
BMC Genomics, 2008, 9, pp.418. ⟨10.1186/1471-2164-9-418⟩
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Quantitative gene expression profiling of mouse brain regions reveals differential transcripts conserved in human and affected in disease models.

Camille Brochier , Marie-Claude Gaillard , Elsa Diguet , Nicolas Caudy , Carole Dossat et al.
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Translational control of intron splicing in eukaryotes

Olivier Jaillon , Khaled Bouhouche , Jean-François Gout , Jean-Marc Aury , Benjamin Noel et al.
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Complete circular DNA in the mitochondria-like organelles of Blastocystis hominis.

Ivan Wawrzyniak , Michaël Roussel , Marie Diogon , Arnaud Couloux , Catherine Texier et al.
International Journal for Parasitology, 2008, 38 (12), pp.1377-1382. ⟨10.1016/j.ijpara.2008.06.001⟩
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The genome sequence of the model ascomycete fungus Podospora anserina

Eric Espagne , Olivier Lespinet , Fabienne Malagnac , Corinne da Silva , Olivier Jaillon et al.
Genome Biology, 2008, 9 (5), pp.R77. ⟨10.1186/gb-2008-9-5-r77⟩
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Sur le terrain du respect

Dominique Bodin , P. Wincker , P. Fournel , J.-P. Dubois
Module étrange, 2008, pp.1-24
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The genome sequence of the model ascomycete fungus Podospora anserina.

Eric Espagne , Olivier Lespinet , Fabienne Malagnac , Corinne da Silva , Olivier Jaillon et al.
Genome Biology, 2008, 9 (5), pp.R77. ⟨10.1186/gb-2008-9-5-r77⟩
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Transcriptome of Aphanomyces euteiches: new oomycete putative pathogenicity factors and metabolic pathways.

Elodie Gaulin , Mohammed-Amine Madoui , Arnaud Bottin , Christophe Jacquet , Catherine Mathé et al.
PLoS ONE, 2008, 3 (3), pp.e1723. ⟨10.1371/journal.pone.0001723⟩
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Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis.

Ana C Fierro , Raphaël Thuret , Laurent Coen , Muriel Perron , Barbara A Demeneix et al.
BMC Genomics, 2007, 8, pp.118. ⟨10.1186/1471-2164-8-118⟩
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Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina

Cecile Rinaldi , Annegret Kohler , Pascal Frey , Frédéric Duchaussoy , Francois Ningre et al.
Plant Physiology, 2007, 144 (1), pp.347-366. ⟨10.1104/pp.106.094987⟩
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Olivier Jaillon , Jean-Marc Aury , Benjamin Noel , Alberto Policriti , Christian Clepet et al.
Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩
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AphanoDB: a genomic resource for Aphanomyces pathogens.

Mohammed-Amine Madoui , Elodie Gaulin , Catherine Mathé , Hélène San Clemente , Arnaud Couloux et al.
BMC Genomics, 2007, 8, pp.471. ⟨10.1186/1471-2164-8-471⟩
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Large-scale identification of human genes implicated in epidermal barrier function.

N. Mattiuzzo , E. Toulza , Mf Galliano , N. Jonca , C. Dossat et al.
Genome Biology, 2007, 8, pp.67-74
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Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance

Javier Terol , Ana Conesa , Jose M Colmenero , Manuel Cercos , Francisco Tadeo et al.
BMC Genomics, 2007, 8, ⟨10.1186/1471-2164-8-31⟩
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Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.

Nicolas Vodovar , David Vallenet , Stéphane Cruveiller , Zoé Rouy , Valérie Barbe et al.
Nat Biotechnol, 2006, 24 (6), pp.673-9. ⟨10.1038/nbt1212⟩
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Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome

Didier Lamoureux , Anne Bernole , Isabelle Le Clainche , Sarah Tual , Vincent Thareau et al.
TAG Theoretical and Applied Genetics, 2006, 113 (2), pp.344-356. ⟨10.1007/s00122-006-0301-7⟩
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Global trends of whole genome duplications revealed by the genome sequence of the ciliate Paramecium tetraurelia

Jean-Marc Aury , Olivier Jaillon , * Laurent Duret , Benjamin Noel , Claire Jubin et al.
Nature, 2006, 444 (7116), pp.171-178. ⟨10.1038/nature05230⟩
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Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

Beatriz Sabater-Munoz , Fabrice Legeai , Claude Rispe , Joël Bonhomme , Peter Dearden et al.
Genome Biology, 2006, 7-3 (r21), pp.1-11. ⟨10.1186/gb-2006-7-3-r21⟩
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Chaetognath phylogenomics: a protostome with deuterostome-like development

E. Martin , X. Caubit , L. Fasano , F. Marletaz , Y. Perez et al.
Current Biology, 2006, 16, pp.R577-578
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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.

Jean-Marc Aury , Olivier Jaillon , L. Duret , Benjamin Noel , Claire Jubin et al.
Nature, 2006, 444 (7116), pp.171-8. ⟨10.1038/nature05230⟩
Article dans une revue hal-00132091 v1

Mutator-like element in the yeast Yarrowia lipolytica displays multiple alternative splicings.

Cécile Neuvéglise , Fabienne Chalvet , Patrick Wincker , Claude Gaillardin , Serge Casaregola
Eukaryotic Cell, 2005, 4 (3), pp.615-624. ⟨10.1128/EC.4.3.615-624.2005⟩
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Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation

Karin Eiglmeier , Patrick Wincker , Laurence Cattolico , Véronique Anthouard , Inge Holm et al.
Insect Biochemistry and Molecular Biology, 2005, 35 (8), pp.799-814. ⟨10.1016/j.ibmb.2005.02.020⟩
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Vertebrate-Type Intron-Rich Genes in the Marine Annelid Platynereis dumerilii

Florian Raible , Kristin Tessmar-Raible , Kazutoyo Osoegawa , Patrick Wincker , Claire Jubin et al.
Science, 2005, 310 (5752), pp.1325-1326. ⟨10.1126/science.1119089⟩
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Complete nucleotide sequence of the mitochondrial DNA from Kluyveromyces lactis.

Yvan Zivanovic , Patrick Wincker , Benoit Vacherie , Monique Bolotin-Fukuhara , Hiroshi Fukuhara
FEMS Yeast Research, 2005, 5 (4-5), pp.315-22. ⟨10.1016/j.femsyr.2004.09.003⟩
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Genome duplication in the teleost fish Tretraodon nigroviridis reveals the early vertebrate proto-karyotype

Olivier Jaillon , Jean-Marc Aury , Frédéric Brunet , Jean-Louis Petit , Nicole Stange-Thomann et al.
Nature, 2004, 431 (7011), pp.946-957. ⟨10.1038/nature03025⟩
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Genome evolution in yeasts.

Bernard Dujon , David Sherman , Gilles Fischer , Pascal Durrens , Serge Casaregola et al.
Nature, 2004, 430 (6995), pp.35-44. ⟨10.1038/nature02579⟩
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Whole Genome Sequence Comparisons and “Full-Length” cDNA Sequences: A Combined Approach to Evaluate and Improve Arabidopsis Genome Annotation

Vanina Castelli , Jean-Marc Aury , Olivier Jaillon , Patrick Wincker , Christian Clepet et al.
Genome Research, 2004, 14 (3), pp.406-413. ⟨10.1101/gr.1515604⟩
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Whole genome sequence comparisons and "full-lenght" cDNA sequences: a combined approach to evaluate and improve Arabidopdid genome annotation

V. Castelli , J.M. Aury , Olivier Jaillon , Patrick Wincker , Christian Clepet et al.
Genome Research, 2004, 14 (3), pp.406-413
Article dans une revue hal-02672600 v1

Genome duplication in the teleost fish <i>Tetraodon nigroviridis</i> reveals the early vertebrate proto-karyotype

O. Jaillon , J.-M. Aury , F. Brunet , J.L. Petit , N. Stange-Thomann et al.
Nature, 2004, 431, pp.946-957. ⟨10.1038/nature03025⟩
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The complete mitochondrial genome sequence of the pathogenic yeast Candida ( Torulopsis ) glabrata

Romain Koszul , Alain Malpertuy , Lionel Frangeul , Christiane Bouchier , Patrick Wincker et al.
FEBS Letters, 2003, 534 (1-3), pp.39-48. ⟨10.1016/s0014-5793(02)03749-3⟩
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The DNA sequence and analysis of human chromosome 14

Roland Heilig , Ralph Eckenberg , Jean-Louis Petit , Núria Fonknechten , Corinne da Silva et al.
Nature, 2003, 421 (6923), pp.601-607. ⟨10.1038/nature01348⟩
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Genome sequence of the plant pathogen Ralstonia solanacearum.

Marcel Salanoubat , S. Genin , François Artiguenave , J. Gouzy , S. Mangenot et al.
Nature, 2002, 415 (6871), pp.497-502. ⟨10.1038/415497a⟩
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Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

M.D. Katinka , S. Duprat , E. Cornillot , G. Metenier , F. Thomarat et al.
Nature, 2001, 414, pp.450-453. ⟨10.1038/35106579⟩
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The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403

Alexander Bolotin , Patrick Wincker , Stéphane Mauger , Olivier Jaillon , Karine Malarme et al.
Genome Research, 2001, 11 (5), pp.731-753. ⟨10.1101/gr.gr-1697r⟩
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Initial sequencing and analysis of the human genome

Eric Lander , Lauren Linton , Bruce Birren , Chad Nusbaum , Michael Zody et al.
Nature, 2001, 409 (6822), pp.860-921. ⟨10.1038/35057062⟩
Article dans une revue hal-04419732 v1

The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403

A. Bolotin , Patrick Wincker , S. Mauger , Olivier Jaillon , Karine Malarme et al.
Genome Research, 2001, 11, pp.731-753
Article dans une revue hal-02681585 v1

Genomic exploration of the hemiascomycetous yeasts: 6. Saccharomyces exiguus

E. Bon , Cécile Neuvéglise , A. Lépingle , Patrick Wincker , Francois Artiguenave et al.
FEBS Letters, 2000, 487, pp.42-46
Article dans une revue hal-02694290 v1

Genomic exploration of the hemiascomycetous yeasts: 14. Debaryomyces hansenii var. hansenii

A. Lépingle , Serge Casaregola , Cécile Neuvéglise , E. Bon , H.V. Nguyen et al.
FEBS Letters, 2000, 2000, pp.82-86
Article dans une revue hal-02694689 v1

Genomic exploration of the hemiascomycetous yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae

B. Llorente , P. Durrens , A. Malpertuy , M. Aigle , Francois Artiguenave et al.
FEBS Letters, 2000, 487, pp.122-133
Article dans une revue hal-02696721 v1

Genomic exploration of the hemiascomycetous yeasts: 5. Saccharomyces bayanus var. uvarum

E. Bon , Cécile Neuvéglise , Serge Casaregola , Francois Artiguenave , Patrick Wincker et al.
FEBS Letters, 2000, 487, pp.37-41
Article dans une revue hal-02694284 v1

Genomic exploration of the hemiascomycetous yeasts: 17. Yarrowia lipolytica

Serge Casaregola , Cécile Neuvéglise , A. Lépingle , E. Bon , C. Feynerol et al.
FEBS Letters, 2000, 487, pp.95-100
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Genomic exploration of the hemiascomycetous yeasts: 21. Comparative functional classification of genes.

C. Gaillardin , G. Duchateau-Nguyen , F. Tekaia , B. Llorente , S. Casaregola et al.
FEBS Letters, 2000, 487 (1), pp.134-49. ⟨10.1016/S0014-5793(00)02292-4⟩
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Genomic exploration of the hemiascomycetous yeasts: 7. Saccharomyces servazzii

Serge Casaregola , A. Lépingle , E. Bon , Cécile Neuvéglise , H.V. Nguyen et al.
FEBS Letters, 2000, 487, pp.47-51
Article dans une revue hal-02694291 v1

Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

Hugues Roest Crollius , Olivier Jaillon , Alain Bernot , Corinne Dasilva , Laurence Bouneau et al.
Nature Genetics, 2000, 25 (2), pp.235-238. ⟨10.1038/76118⟩
Article dans une revue hal-03772374 v1

Genomic exploration of the hemiascomycetous yeasts: 9. Saccharomyces kluyveri

Cécile Neuvéglise , E. Bon , A. Lépingle , Patrick Wincker , Francois Artiguenave et al.
FEBS Letters, 2000, 487, pp.56-60
Article dans une revue hal-02694289 v1

PCR-based diagnosis for Chagas' disease in bolivian children living in an active transmission area : comparison with conventional serological and parasitological diagnosis

P. Wincker , Jenny Telleria , Marie-France Bosseno , M.A. Cardoso , P. Marques et al.
Memórias do Instituto Oswaldo Cruz, 1996, 91 (no spécial), pp.297
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Unrelated sequences at the 5′ end of mouse LINE-1 repeated elements define two distinct sub-families

Patrick Wincker , Véronique Jubier-Maurin , Gérard Roizès
Nucleic Acids Research, 1987, 15 (21), pp.8593-8606. ⟨10.1093/nar/15.21.8593⟩
Article dans une revue hal-02170275 v1

The relationships between the 5′ end repeats and the largest members of the LI interspersed repeated family in the mouse genome

Véronique Jubier-Maurin , Patrick Wincker , Gérard G. Cuny , Gérard Roizès
Nucleic Acids Research, 1987, 15 (18), pp.7395-7410. ⟨10.1093/nar/15.18.7395⟩
Article dans une revue hal-02171107 v1

Origin and evolutionary trajectories of brown algal sex chromosomes

Josué Barrera-Redondo , Agnieszka Lipinska , Pengfei Liu , Erica Dinatale , Guillaume Cossard et al.
2024
Pré-publication, Document de travail hal-04453200 v1

Genome-resolved diversity and biosynthetic potential of the coral reef microbiome

Lucas Paoli , Fabienne Wiederkehr , Hans-Joachim Ruscheweyh , Samuel Miravet-Verde , Kalia S.I. Bistolas et al.
2024
Pré-publication, Document de travail hal-04807685 v1
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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Ann M Mc Cartney , Giulio Formenti , Alice Mouton , Diego de Panis , Luísa S Marins et al.
2024
Pré-publication, Document de travail hal-04406124 v1
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Global observation of plankton communities from space

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé et al.
2022
Pré-publication, Document de travail hal-03855690 v1
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Mirusviruses provide a missing link in the evolution of giant viruses Plankton-infecting relatives of herpesviruses clarify the evolutionary trajectory of giant viruses

Morgan Gaïa , Lingjie Meng , Eric Pelletier , Patrick Forterre , Chiara Vanni et al.
2022
Pré-publication, Document de travail (preprint/prepublication) hal-03876463 v1
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From genome wide SNPs to genomic islands of differentiation: the quest for species diagnostic markers in two scleractinian corals,<i>Pocillopora</i>and<i>Porites</i>

Romane Deshuraud , Alexandre Ottaviani , Julie Poulain , Marine Leprêtre , Odette Beluche et al.
2023
Pré-publication, Document de travail (working paper) hal-04195332 v1
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Insights into biotic and abiotic modulation of ocean mesopelagic communities

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Karlusich et al.
2022
Pré-publication, Document de travail hal-03166899 v1

Changes in functional composition and gene expression in eukaryotic plankton at the Atlantic-Arctic Polar front

Paul Frémont , Corinne da Silva , Lucia Campese , Émilie Villar , Achal Rastogi et al.
2023
Pré-publication, Document de travail (preprint/prepublication) hal-04328288 v1
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Restructuring of genomic provinces of surface ocean plankton under climate change

Paul Frémont , Marion Gehlen , Mathieu Vrac , Jade Leconte , Tom O. Delmont et al.
2021
Pré-publication, Document de travail cea-03166589 v2

Equatorial to Polar genomic variability of the microalgae <i>Bathycoccus prasinos</i>

Jade Leconte , Youri Timsit , Tom O Delmont , Magali Lescot , Gwenael Piganeau et al.
2023
Pré-publication, Document de travail (preprint/prepublication) hal-04308022 v1
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Ecogenomics of key prokaryotes in the arctic ocean

Marta Royo-Llonch , Pablo Sánchez , Clara Ruiz-González , Guillem Salazar , Carlos Pedrós-Alió et al.
2020
Pré-publication, Document de travail hal-02946895 v1

Environmental vulnerability of the global ocean plankton community interactome

S. Chaffron , E. Delage , M. Budinich , D. Vintache , N. Henry et al.
2020
Pré-publication, Document de travail hal-03971893 v1
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Linking Allele-Specific Expression And Natural Selection In Wild Populations

Romuald Laso-Jadart , Kevin Sugier , Emmanuelle Petit , Karine Labadie , Pierre Peterlongo et al.
2019
Pré-publication, Document de travail hal-02275928 v1

ADN et ARN environnementaux : découverte et fonctions

Patrick Wincker
Colloque ADNe/ARNe L’ADN (ADNe) : marqueurs du vivant dans les écosystèmes, Académie d'Agriculture de France, Sep 2023, Paris, France
Communication dans un congrès cea-04482722 v1

Role of cyanate lyase in low-nitrate acclimation in the picophytoplankton Pelagomonas calceolata

Nina Guerin , Quentin Carradec , Patrick Wincker , Adrien Thurotte
8th European Phycological Congress, Aug 2023, Brest, France
Communication dans un congrès hal-04406043 v1
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European mink (Mustela lutreola) reference genome and population genomics

Alice Mouton , Christine Fournier-Chambrillon , Pascal Fournier , Jakub Skorupski , Przemysław Śmietana et al.
34th European Mustelid Colloquium, Sep 2022, Online conference, France
Communication dans un congrès hal-03787589 v1

High-quality genome assemblies of corals highlight the specifics of their long lifespan

France Denoeud , Benjamin Noel , Julie Poulain , Carol Bruitago , Quentin Carradec et al.
EAGS, France Génomique, Oct 2021, Tours (France), France
Communication dans un congrès hal-04440766 v1

Disentangling the effects of genotype, environment, and symbiotype on coral holobiont gene expression across the Pacific

Eric Armstrong , Quentin Carradec , Julie Lê-Hoang , Patrick Wincker
Environmental and Agronomical Genomics 2021 symposium, Oct 2021, Tours, France
Communication dans un congrès hal-04410520 v1

La révolution génomique : de nouvelles approches pour étudier le vivant

Patrick Wincker
Colloque AFBV 2021 : les biotechnologies végétales entre science et société, Association Française des Biotechnologies Végétales, Oct 2021, Paris, France
Communication dans un congrès cea-04482731 v1

Global-scale functional genomic and population genetic analyses of Millepora, Pocillopora, and Porites coral host diversity

Eric Armstrong , Quentin Carradec , Julie Lê-Hoang , Patrick Wincker
International Coral Reef Society Symposium, Jul 2020, Bremen, France
Communication dans un congrès hal-04406087 v1

Genome-centered approaches for eukaryotes in complex microbial communities

Patrick Wincker
Fourth Microbial Single Cell Genomics (SCGC) Workshop, Sep 2019, Boothbay Harbor, United States
Communication dans un congrès cea-04482711 v1

Co-evolution of chloroplast and nuclear genomes in flowering plants and impact of allopolyploidy on fine tune cytonuclear interactions.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin et al.
International Conference on Polyploidy, Jun 2019, Ghent, Belgium
Communication dans un congrès hal-03318182 v1

Cytonuclear interactions remain stable during allopolyploid evolution despite repeated wholegenome duplications

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint Malo, France
Communication dans un congrès hal-04665569 v1

How build up soil bacterial co-occurrence networks from wide spatial scale sampling?

Battle Karimi , Samuel Dequiedt , Sébastien Terrat , Claudy Jolivet , Dominique Arrouays et al.
JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Communication dans un congrès hal-02953290 v1

Biogeographical design of soil microbial habitats

Battle Karimi , Jean Villerd , Samuel Dequiedt , Sébastien Terrat , Nicolas Chemidlin Prévost-Bouré et al.
5ème colloque du GDR de Génomique Environnementale, Oct 2019, La Rochelle, France
Communication dans un congrès hal-02951841 v1

Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus

Mathieu Rousseau-Gueutin , Jérémy Lucas , France Denoeud , Julie Ferreira de Carvalho , Zhesi He et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France
Communication dans un congrès hal-03318226 v1

Challenges in the analysis of large-scale meta-omics data for marine eukaryotes

Patrick Wincker
Gordon Research Conference- Marine Microbes, Gordon Research Conference, Jul 2018, Lucca (Barga), Italy
Communication dans un congrès cea-04482704 v1

Innovative tools to diagnose the impact of land use practices on soil microbial communities

Sébastien Terrat , Walid Horrigue , Battle Karimi , Samuel Dequiedt , Nicolas Chemidlin Prévost-Bouré et al.
21st World Congress of Soil Science, Aug 2018, Rio de Janeiro, Brazil. pp.96
Communication dans un congrès hal-03103798 v1

The Pisum Genus: Getting out of Pea Soup!

Jonathan Kreplak , Mohammed-Amin Madoui , Karine Labadie , Grégoire Aubert , Petr Capal et al.
Plant and Animal Genome XXVI Conference, 2018, San Diego (CA), United States
Communication dans un congrès hal-04331722 v1

How a polyploid becomes a new species: example from the Brassica model.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , J. Lucas , France Denoeud , Fabrice Legeai et al.
International Conference on Environmental and Agronomical Genomics, 2018, Paris, France
Communication dans un congrès hal-03318223 v1

Mapping, understanding and predicting soil microbial diversity across France

Nicolas Chemidlin Prévost-Bouré , Sébastien Terrat , Battle Karimi , Samuel Dequiedt , Walid Horrigue et al.
21st World Congress of Soil Science, Aug 2018, Rio de Janeiro, Brazil
Communication dans un congrès hal-03102542 v1

Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling

Julie Ferreira de Carvalho , Jérémy Lucas , Cyril Falentin , Gwenaëlle Deniot , Olivier Filangi et al.
Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Communication dans un congrès hal-03318235 v1

Bacterial social networks across the French National territory

Battle Karimi , Nicolas Chemidlin Prévost-Bouré , Sébastien Terrat , Samuel S. Dequiedt , Nicolas Saby et al.
Journée d’Ecologie Fonctionnelle AnaEE, AnaEE Analyses et Expérimentations sur les Ecosystèmes - France., Mar 2017, La Grande Motte, France
Communication dans un congrès hal-01605623 v1

A transcriptomic approach to study marine plankton holobionts

Arnaud Meng , Erwan Corre , Pierre Peterlongo , Camille Marchet , Adriana A. Alberti et al.
International Conference on Holobionts, Apr 2017, Paris, France
Communication dans un congrès hal-01575069 v1
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The pea genome

Jonathan Kreplak , Mohammed-Amin Madoui , Karine Labadie , Gregoire Aubert , Philippe Bayer et al.
8. International Conference on Legume Genetics and Genomics (ICLGG), Noble Research Institute., Sep 2017, Siófok, Hungary. 128 p
Communication dans un congrès hal-02735156 v1
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Mapping and predictive variations of soil microbial richness, bacterial and archaeal phyla across France

Sébastien Terrat , Battle Karimi , Walid Horrigue , Samuel Dequiedt , Nicolas Saby et al.
4. International Conference on Microbial Diversity 2017 (MD 2017), Oct 2017, Bari, Italy. pp.209-211
Communication dans un congrès hal-02738142 v1

Bacterial "social" network in french soils : a Metagenomics insight

Battle Karimi , Nicolas Chemidlin Prévost-Bouré , Sébastien Terrat , Samuel S. Dequiedt , Nicolas Saby et al.
Journée d’Ecologie Fonctionnelle AnaEE, AnaEE Analyses et Expérimentations sur les Ecosystèmes - France., Mar 2017, La Grande Motte, France
Communication dans un congrès hal-01608367 v1

Soil bacterial interaction networks on a wide scale

Battle Karimi , Nicolas Chemidlin Prévost-Bouré , Sébastien Terrat , Samuel Dequiedt , Claudy Jolivet et al.
4. International Conference on Microbial Diversity 2017 (MD 2017), Oct 2017, Bari, Italy. pp.414-415
Communication dans un congrès hal-02735708 v1
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Le pois, espèce modèle ?

Judith Burstin , Nadim N. Tayeh , Anthony Klein , Jonathan Kreplak , Françoise Jacquin et al.
1. Rencontres Francophones sur les Légumineuses (RFL1), Institut National de la Recherche Agronomique (INRA). FRA., May 2016, Dijon, France
Communication dans un congrès hal-02741352 v1

Is soil an island for bacteria ? Contribution of the soil bacterial taxa area relationship unsing new generation sequencing

Nicolas Chemidlin Prévost-Bouré , Sébastien Terrat , Samuel Dequiedt , Nicolas Saby , Claudy Jolivet et al.
16. International Symposium on Microbial Ecology - ISME16, International Society for Microbial Ecology (ISME). INT., Aug 2016, Montréal, Canada
Communication dans un congrès hal-02798699 v1
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Towards the genome sequence of pea : a tribute to Mendel

Mohammed-Amin Madoui , K. Labadie , Jonathan Kreplak , Gregoire Aubert , Léo d'Agata et al.
2. International Legume Society Conference - Legumes for a Sustainable World, Legume Society., Oct 2016, Lisbone, Portugal. 358 p
Communication dans un congrès hal-01602206 v1

Biogeographical patterns of soil bacterial diversity at the scale of France

Sébastien Terrat , Samuel S. Dequiedt , Nicolas Saby , Walid Horrigue , Mélanie M. Lelievre et al.
16. International Symposium on Microbial Ecology - ISME16, Aug 2016, Montréal, Canada
Communication dans un congrès hal-01603633 v1

Oak genome sequencing and evolution

Jerome J. Salse , Jean Marc Aury , Florent Murat , Sébastien Faye , Karine Labadie et al.
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès hal-02741698 v1

Sequencing and Analysis of Wheat Chromosome 1B

Frédéric Choulet , Hélène Rimbert , Ambre-Aurore Josselin , Benoît Darrier , Pierre Sourdille et al.
Plant and Animal Genome XXIV Conference; IWGSC Standards and Protocoles Workshop, Jan 2016, San Diego, CA, United States
Communication dans un congrès hal-02306172 v1

Towards the rose genome sequence and its use in research and breeding

Fabrice Foucher , Laurence Hibrand-Saint Oyant , Latifa Hamama , Soulaiman Sakr , H. Nybom et al.
VI International Symposium on Rose Research and Cultivation, 2015, Hanovre, Germany. pp.167-175
Communication dans un congrès hal-01393815 v1

Pea in the genomic era

Judith Burstin , Susete Alves Carvalho , Christelle Aluome , Nadim Tayeh , Anne-Lise Brochot et al.
Séminaire IFR AIB (Agrobiosciences, Interactions & Biodiversité), Feb 2015, Toulouse, France, 24 février 2015, France
Communication dans un congrès hal-01536570 v1

Towards an universal genome-based DNA barcode-The PhyloAlps project

Eric Coissac , Pierre Taberlet , Cristina Roquet , Marti Boleda , Ludovic Gielly et al.
6th International Barcode of Life Conference, Aug 2015, Guelph, Canada. pp.206-206
Communication dans un congrès cea-04573288 v1

A reference sequence of wheat chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe et al.
3. Plant Genomics Congress, May 2015, London, United Kingdom
Communication dans un congrès hal-02740971 v1
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Pea genomic tools for functional and structural approaches

Nadim N. Tayeh , Susete Alves Carvalho , Christelle Aluome , Sébastien Carrere , Jonathan Kreplak et al.
Mendel's legacy - 150 years of the genius of genetics, Masaryk University. CZE., Sep 2015, Brno, Czech Republic
Communication dans un congrès hal-02743963 v1
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Assembling a pseudomolecule for a wheat chromosome: the 3B experience

Frédéric Choulet , Adriana A. Alberti , Valérie Barbe , Sébastien Theil , Pierre Sourdille et al.
22. Conference on Plant and Animal Genome, Jan 2014, San Diego, Californie, United States
Communication dans un congrès hal-02743902 v1
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A reference sequence of wheat chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe et al.
22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States
Communication dans un congrès hal-02742303 v1

Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass family

Carine Charron , Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Houda Chelaifa , Julien Boutte et al.
Réunion du groupe « Cytogénétique et Polyploïdie », May 2014, Clermont-Ferrand, France
Communication dans un congrès hal-01108395 v1

Le séquençage massif pour caractériser la diversité microbienne des sols, standardisation et applications au sein de la plateforme GenoSol

Sébastien Terrat , Samuel Dequiedt , Nicolas Chemidlin Prévost-Bouré , Nicolas N. Saby , Mélanie M. Lelievre et al.
Colloque Etude du Polymorphisme des Génomes Végétaux (EPGV), Jun 2014, Évry, France
Communication dans un congrès hal-02740417 v1

Pea in the genomic era

Susete Alves Carvalho , Christelle Aluome , Gregoire G. Aubert , Corinne Cruaud , Anthony Klein et al.
2. Adam Kondorosi Symposium "Frontiers in Legume Biology",, Dec 2014, Gif-sur-Yvette, France
Communication dans un congrès hal-02797923 v1
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Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3B

Frédéric Choulet , Sébastien Theil , Josquin Daron , Natasha Marie Glover , Nicolas N. Guilhot et al.
IWGSC Wheat Genome Sequencing Strategy and Funding Workshop, International Wheat Genome Sequencing Consortium (IWGSC). USA., Apr 2013, Evry, France
Communication dans un congrès hal-02747374 v1

Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in the hexaploid Spartina maritime (Poaceae)

Julien Boutte , Benoit Aliaga , Julie Ferreira de Carvalho , Oscar Lima , Sophie Coudouel et al.
Rencontres ALPHY/PhyloSIB, Feb 2013, Lyon, France
Communication dans un congrès hal-01108442 v1
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A strategy to assemble a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Josquin Daron , Natasha Marie Glover , Nicolas N. Guilhot et al.
TGAC/ESF-LESC workshop, Strategies for de novo assemblies of complex crop genomes, Genome Analysis Centre (TGAC). Norwich, GBR., Oct 2012, Norwich, United Kingdom
Communication dans un congrès hal-02809032 v1

Genomic resources for functional analysis in <em>Medicago truncatula</em> and related crop species

Frederic Debellé , C. Belser , J.M. Aury , K. Labadie , Brice Roux et al.
6. International Conference on Legume Genetics and Genomics, International Crops Research Institute for the Semi-Arid Tropics, CGIAR (ICRISAT). Patancheru, IND., Oct 2012, Hyderabad, India
Communication dans un congrès hal-02747944 v1
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Apport des nouvelles générations de séquençage pour accéder à la diversité et la richesse des communautés microbiennes de sols issus d'échantillonnage de grande ampleur

Sébastien Terrat , Samuel S. Dequiedt , Richard Christen , Dipankar Bachar , Mélanie M. Lelievre et al.
Ecole Thématique Expert Génomique Environnementale ETEGE, Apr 2012, Aussois, France
Communication dans un congrès hal-01208719 v1
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Towards a reference sequence of the 1 Gb wheat chromosome 3B

Frédéric Choulet , Sébastien Theil , Adriana A. Alberti , Valérie Barbe , Sophie Mangenot et al.
16. Annual Advances in Genome Biology and Technology (AGBT), Feb 2012, Marco Island, Floride, United States
Communication dans un congrès hal-02807639 v1
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Influence of Soil DNA Extraction Procedure to Assess Bacterial Diversity using Pyrosequencing of 16S rDNA

Sébastien Terrat , Richard Christen , Samuel S. Dequiedt , Christophe Mougel , Mélanie M. Lelievre et al.
NENUN ISME-Workshop: Extraction of Microbial DNA & RNA in Environmental Samples, Aug 2012, Copenhague, Denmark
Communication dans un congrès hal-01208718 v1

Ecological genomics of invasive polyploids: Case study from hexaploid and allo-dodecaploid Spartina species colonizing salt marshes

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Coudouel et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Pruhonice, Czech Republic
Communication dans un congrès hal-01108907 v1

GENOTROUT - Apport des nouvelles technologies de séquençage (NGS) à l'analyse du génome de la truite arc-en-ciel (2010-2013)

Yann Guiguen , Carine Genet , Edwige Quillet , Mekki Boussaha , Jean-Nicolas Volff et al.
9. Colloque Agenae/ANR, Mar 2012, La Rochelle, France. pp.18
Communication dans un congrès hal-01019800 v1

Apport des nouvelles générations de séquençage pour accéder à la diversité des communautés microbiennes du sol : nécessité d’un ‘pipeline’ bio-informatique pour les biologistes

Sébastien Terrat , Samuel Dequiedt , Richard Christen , Mélanie M. Lelievre , Tiffanie Regnier et al.
Journées d'animation "MEM Days" organisées par l'INRA, Jan 2012, Ecully, France
Communication dans un congrès hal-02809171 v1

Development of genomic resources for <em>Medicago truncatula</em> and related legume crops

Frederic Debellé , Marion Verdenaud , Anne-Marie Dudez , Nicolas Samson , Olivier Saurat et al.
Model Legume Congress 2011, Institut National Polytechnique (Toulouse) (Toulouse INP). Castanet Tolosan, FRA., May 2011, Sainte Maxime, France
Communication dans un congrès hal-02746654 v1
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Influence of Soil DNA Extraction Procedure to Assess Bacterial Diversity using Pyrosequencing of 16S rDNA

Sébastien Terrat , Richard Christen , Samuel Dequiedt , Christophe Mougel , Mélanie M. Lelievre et al.
6. ISMOM: International Symposium of Interactions of Soil Minerals withOrganic Components and Microorganisms.3. InterCongress of Commission 2.5 IUSSSoil chemical, physical and biological interfacial reactions, Labo/service de l'auteur, Ville service, Pays service., Jun 2011, Montpellier, France
Communication dans un congrès hal-02746836 v1

Comparative genomics of the Nakaseomyces clade: Candida glabrata and enew merging pathogens

Cécile Fairhead , Toni Gabaldón , Tiphaine Martin , Pascal Durrens , Olivier Lespinet et al.
Comparative Genomics of Eukaryotic Microorganisms,, Oct 2011, Sant Feliu de Guixols, Spain
Communication dans un congrès hal-00674241 v1
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Report on sequencing the wheat chromosome 3B

Frédéric Choulet , Patrick Wincker , Hadi Quesneville , Dominique D. Brunel , Bikram S. Gill et al.
19. Plant and Animal Genome Conference, Jan 2011, San Diego, Californie, United States. 1 p
Communication dans un congrès hal-02808854 v1

Vers la caractérisation des compartiments codant et répété du génome des spartines polyploïdes par séquençage en masse

Julie Ferreira de Carvalho , Houda Chelaifa , Jiri Macas , Oscar Lima , Sophie Coudouel et al.
Colloque « Biodiversité, Histoire des Espèces, Evolution des Génomes », Jun 2011, Rennes, France
Communication dans un congrès hal-01108953 v1
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Sequencing and Analyses of the Hexaploid Wheat Chromosome 3B

Frédéric Choulet , P. Wincker , Hadi Quesneville , Dominique D. Brunel , B. Gill et al.
19. Conference on Plant and Animal Genome, Jan 2011, San Diego, CA, United States
Communication dans un congrès hal-02747876 v1

Nature, nurture and the structure of macroalgal genomes

J. Mark Cock , Jonas Collen , Lieven Sterck , Pierre Rouzé , Delphine Scornet et al.
5. European Phycological Congress, Sep 2011, Rhodes, Greece
Communication dans un congrès hal-02749757 v1
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Naissance et diversification des effecteurs dans les génomes fongiques: le projet ANR FungIsochore

Thierry T. Rouxel , Bruno Le Cam , Joelle J. Amselem , P. Wincker , Marie-Helene Balesdent
8. Rencontres de Phytopathologie - Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Ausois, France
Communication dans un congrès hal-02753379 v1

Bioinformatic analysis of Sanger and 454 ESTs in oak

Saneyoshi S. Ueno , Grégoire G. Le Provost , Valérie V. Léger , Christophe Klopp , Celine C. Noirot et al.
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73
Communication dans un congrès hal-00964385 v1
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Sequencing and analyses of the hexaploid wheat chromosome 3B

Frédéric Choulet , Etienne Paux , Philippe Leroy , Arnaud Couloux , Michaël Alaux et al.
10. conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom
Communication dans un congrès hal-02753841 v1
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GENOTROUT - Apport des nouvelles technologies de séquençage (NGS) à l'analyse du génome pseudotétraploide de la truite arc-en-ciel (2010-2012)

Yann Guiguen , Carine Genet , Edwige Quillet , Jean-Nicolas Volff , Domitille Chalopin et al.
8. Journées AGENAE, Nov 2010, Bordeaux, France
Communication dans un congrès hal-01193660 v1
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Development of resources for comparative physical mapping between Muscadinia rotundifolia and Vitis vinifera

Iritche Zah-Bi , Sophie Blanc , Marc Bras , Aurelie A. Canaguier , Isabelle I. Le Clainche et al.
6. International Workshop of Grapevine Downy and Powdery Mildew. GDPM 2010, Jul 2010, BORDEAUX, France
Communication dans un congrès hal-02754937 v1

AT-rich isochores as ecological niches for effectors in the genome of Leptosphaeria maculans

Isabelle Fudal-Grolier Fudal , Jonathan J. Grandaubert , Azita A. Dilmaghani , Nicolas Glaser , Patrick Wincker et al.
14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Quebec City, Canada
Communication dans un congrès hal-02756559 v1
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Towards sequencing the 1 Gb wheat chromosome 3B

Frédéric Choulet , Etienne Paux , Philippe Leroy , Pierre Sourdille , Stéphane Schlub et al.
1. Workshop of StatSeq COST Action TD0801, Oct 2009, Barcelona, Spain
Communication dans un congrès hal-02818225 v1

Development of genomic resources in oak to study the structure, variability, evolution and functioning of its genome

Christophe Plomion , Franck Salin , Jean-Marc Frigerio , Catherine Bodenes , Patricia Faivre Rampant et al.
International Plant & Animal genomes XV Conferences, Jan 2007, San Diego, United States
Communication dans un congrès hal-00337980 v1

A SNP detection project using one million reads from WGS libraries produced from one pig from seven different breeds.

Patrice Dehais , Denis Milan , Thomas Faraut , C. Dossat , Patrick Wincker et al.
International Plant & Animal Genomes XV Conference, San Diego, 2007, California, France
Communication dans un congrès hal-02751166 v1

Prospective scientifique pour la recherche française sur la biodiversité - 2023

D. Couvet , A. Delavaud , J. Langridge , H. Soubelet , L. Abbadie et al.
Fondation pour la Recherche sur la Biodiversité, 50 p., 2023, 979-10-91015-66-0
Ouvrages hal-04637987 v1

Transcriptomic response of the picophytoplankton Pelagomonas calceolata to nitrogen depleted environments

Nina Guérin , Quentin Carradec , Patrick Wincker , Chloé Seyman , Adrien Thurotte et al.
Resilience and Recovery in Aquatic Systems, Jun 2023, Palma de Mallorca, Spain
Poster de conférence hal-04405314 v1

Ocean-wide comparisons of plankton composition clarify differences in the structure and regulation of mesopelagic communities

Janaina Rigonato , Patrick Wincker , Olivier Jaillon
18th International Symposium on Microbial Ecology, Oct 2022, Lausanne ( CH), Switzerland.
Poster de conférence hal-04391705 v1

Genomic adaptation of Pelagomonas calceolata to temperate iron-poor oceans revealed by a chromosome-scale assembled genome

Nina Guérin , Quentin Carradec , Marta Ciccarella , Elisa Flamant , Sophie Mangenot et al.
Environmental and Agronomical Genomics 2021 symposium, Oct 2021, Tours, France
Poster de conférence hal-04410501 v1

Transcriptional and functional analyses of Symbiodiniaceae across the Pacific Ocean

Julie Lê-Hoang , Quentin Carradec , Eric Armstrong , Patrick Wincker
International Coral Reef Society Symposium, Jul 2020, Bremen, Germany
Poster de conférence hal-04405200 v1
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LONG DNA TECHNOLOGIES EVALUATION FOR PLANT STRUCTURAL VARIATIONS DETECTION : NANOPORE ONT SEQUENCING vs BIONANO GENOMICS OPTICAL MAPPING

Aurélie Canaguier , Erwan Denis , Romane Guilbaud , Ghislaine Magdelenat , Caroline Belser et al.
Plant and Animal Genome XXVIII Conference, Jan 2020, San Diego, United States.
Poster de conférence hal-02925940 v1

Long DNA technologies evaluation for plant structural variations detection: Nanopore ONT sequencing vs Bionano Genomics optical mapping

Aurélie Canaguier , Erwan Denis , Romane Guilbaud , Ghislaine Magdelenat , Caroline Belser et al.
- Plant and Animal Genome XXVIII Conference, 2020, San Diego, CA, United States
Poster de conférence hal-04331757 v1

Transcriptional activity of coral holobiont eukaryotes in the framework of Tara Pacific expedition

Quentin Carradec , Julie Lê-Hoang , Eric Armstrong , Julie Poulain , Karine Labadie et al.
Marine Molecular Ecology, Jul 2019, Hong-Kong, China
Poster de conférence hal-04405109 v1
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Genome skimming at the scale of the whole Alpine ecosystem : insights into genome size, gene family amplifications and functional signatures

France Denoeud , Adriana Alberti , Sébastien Lavergne , Patrick Wincker
Conference on Plant Genome Evolution, Sep 2019, Sitges, Spain
Poster de conférence hal-04440668 v1

Chromosome-scale assemblies of Brassica oleracea and Brassica rapa using nanopore long reads and optical maps

Caroline Belser , Bejamin Istace , Denis Engemann , M Dubarry , Cyril Falentin et al.
21st Crucifer Genetics Conference on Brassica - Bassica 2018, Jul 2018, Saint-Malo, France
Poster de conférence hal-03318378 v1

Comparative approaches for metagenomic biogeography and population structures of eukaryotes

Thomas Vannier , Jade Leconte , Patrick Wincker , Olivier Jaillon
4th Environmental Genomics symposium, Sep 2017, Marseille, France
Poster de conférence hal-04391650 v1

Contrasting Spatial Patterns and Ecological Attributes of Soil Bacterial Taxa across French National Territory

Battle Karimi , Sébastien Terrat , Samuel S. Dequiedt , Nicolas Saby , Walid Horrigue et al.
Journée d’Ecologie Fonctionnelle AnaEE, Mar 2017, La Grande Motte, France. , 2017
Poster de conférence hal-01605429 v1
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Contrasting Spatial Patterns and Ecological Attributes of Soil Bacterial Taxa across French National Territory

Battle Karimi , Sébastien Terrat , Samuel S. Dequiedt , Nicolas Saby , Walid Horrigue et al.
Congrès de la Société Française d'Ecologie, Oct 2016, Marseille, France. 2016
Poster de conférence hal-01602852 v1

Pea Genomics : What Else ?

Gregoire Aubert , Mohammed-Amin Madoui , Jonathan Kreplak , Nadim Tayeh , Karine Labadie et al.
ASA-CSSA-SSSA Meeting “Resilience Emerging from Scarcity and Abundance”, Nov 2016, Phoenix, United States. ASA CSSA SSSA Annual Meeting Presentations, 2016, ASA CSSA SSSA Annual Meeting Presentations
Poster de conférence hal-01607090 v1
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Genome assembly using Nanopore-guided Long and Error-free DNA reads

Guillaume Gautreau , Mohammed‐amin Madoui , Stefan Engelen , Adriana A. Alberti , Caroline Belser et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques 2015, Jul 2015, Clermont-Ferrand, France
Poster de conférence hal-04862540 v1

Impact of meiotic recombination on gene admixture for wheat improvement

Benoît Darrier , Frédéric Choulet , Natasha Marie Glover , Adriana A. Alberti , Sébastien Theil et al.
9. International Wheat Conference, Sep 2015, Sydney, Australia. 195 p., 2015, 9th International Wheat Conference 20-25 September 2015, Sydney, Australia : Program and Abstracts
Poster de conférence hal-02741010 v1
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Recent pea genomic resources will enhance complementary improvement strategies in this crop

Judith Burstin , Susete Alves Carvalho , Nadim N. Tayeh , Christelle Aluome , Virginie Bourion et al.
6. International Food Legumes Research Conference (IFLRC VI), Jul 2014, Saskatoon, Canada. , 225 p., 2014
Poster de conférence hal-02743375 v1

Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass family

Carine Charron , Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Houda Chelaifa , Julien Boutte et al.
International Conference on Invasive Spartina 2014, Jul 2014, Rennes, France. , 1 p., 2014
Poster de conférence hal-01109652 v1

The hexaploid Spartina maritime (Poaceae, Chloridoidea) genome: Composition and evolution in the grass family

Julie Ferreira de Carvalho , Carine Charron , Houda Chelaifa , Julien Boutte , Mathieu Rousseau-Gueutin et al.
Plant Genome Evolution Meeting, Sep 2013, Amsterdam, Netherlands. , 2013
Poster de conférence hal-01110188 v1

Genome and transcriptome analyses in hexaploid Spartina species (Poaceae) colonizing salt marshes

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Coudouel et al.
PAG XIX Plant and Animal Genome Conference, Jan 2012, San Diego, United States
Poster de conférence hal-01110212 v1
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Deep sequencing of 16S rRNA gene to efficiently assess bacterial richness and the rare biosphere in soils

Sébastien Terrat , Samuel Dequiedt , Dipankar Bachar , Richard Christen , Christophe Mougel et al.
14. International Symposium on Microbial Ecology (ISME 14), Aug 2012, Copenhague, Danemark, Netherlands. 1 p., 2012
Poster de conférence hal-02806957 v1

Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in hexaploid Spartina species (Poaceae)

Julien Boutte , Benoit Aliaga , Julie Ferreira de Carvalho , Oscar Lima , Sophie Coudouel et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Prague, Czech Republic
Poster de conférence hal-01110201 v1

Genetic diversity of Tuber aestivum / uncinatum

Virginie Molinier , Claude Murat-Furminieux , Emmanuelle Morin , Patrick Wincker , Armelle Gollotte et al.
ALPHY Meeting, Mar 2012, Banyuls sur Mer, France. , 2012
Poster de conférence hal-01268765 v1

Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des sols

Sébastien Terrat , Pierre Plassart , R. Christen , Samuel Dequiedt , Tiffanie Régnier et al.
5ième colloque de l’Association Francophone Ecologie Microbienne (AFEM), Nov 2011, Hammamet, Tunisie. , 1 p., 2011
Poster de conférence hal-02808211 v1

Optimisation du pyroséquençage haut-débit pour caractériser la diversité taxonomique des communautés bactériennes des sols

Sébastien Terrat , Pierre Plassart , R. Christen , Samuel Dequiedt , Tiffanie Régnier et al.
Colloque Génomique Environnementale, Nov 2011, Ecully, France. , 1 p., 2011
Poster de conférence hal-02807955 v1

The complete genome of Propionibacterium freudenreichii CIRM 1 a hardy actinobacteria with food and probiotic applications

Hélène Falentin , Stéphanie-Marie Deutsch , Sandrine Parayre-Breton , Julien Dherbecourt , Gwénaël Jan et al.
3 International Symposium on Propionibacteria and Bifidobacteria: Dairy and Probiotic, Jun 2010, Oviédo, Spain. , International Journal of Food Microbiology, Volume 149, Issue 1, Pages 1-112 (1 September 2011), 2010, International Journal of Food Microbiology
Poster de conférence hal-01454344 v1

TARA Pacific bleaching prevalence of sampling sites (Islands)

Christian R Voolstra , Benjamin C.C Hume , Kyra Pikaar , Guillaume Bourdin , Stéphane Pesant et al.
Autre publication scientifique hal-04384087 v1

TARA Pacific CTAX colony morphological annotations release version 1_1

Guinther Mitushasi , Sylvain Algostini , Benjamin Hume , Yuko Kitano , Julie Poulain et al.
Autre publication scientifique hal-04384090 v1

Tara Pacific V9 18S rDNA metabarcoding dataset

Frédéric Mahé , Nicolas Henry , Cédric Berney , Julie Poulain , Sarah Romac et al.
Autre publication scientifique hal-04384095 v1

Tara Pacific 16S rRNA data analysis release

Hans-Joachim Ruscheweyh , Guillem Salazar , Julie Poulain , Caroline Belser , Quentin Clayssen et al.
Autre publication scientifique hal-04384109 v1

Tara Pacific metabarcoding sequencing (16S, 18S, ITS2) reference & replication tables version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.
Autre publication scientifique hal-04384100 v1

Tara Pacific ITS2 Symbiodiniaceae data release version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.
Autre publication scientifique hal-04384112 v1

Tara Pacific 18S-based coral host genetic analysis data release version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.
Autre publication scientifique hal-04384097 v1
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Génétique et génomique du pois : what else ?

Judith Burstin , Nadim Tayeh , Anthony Klein , Virginie Bourion , Jonathan Kreplak et al.
Société Nationale d'Horticulture de France, pp.33-37, 2016, 978-2-913793-16-3
Proceedings/Recueil des communications hal-02794125 v1

Whole genome sequencing projects of the plant pathogenic fungi Botrytis Cinerea and Sclerotinia Sclerotiorum

Sabine, Helma Fillinger , Joelle J. Amselem , Francois Artiguenave , Arnaud Billault , Mathias Choquer et al.
Macromolecules and secondary metabolites of grapevine and wine : fruit development, biotic and abiotic stresses, mechanisms of plant defense responses, proteins, glycoproteins, polysaccharides, polyphenolics, aroma compounds and secondar, EDITIONS TEC ET DOC, 2007, 978-2-7430-0965-9
Chapitre d'ouvrage hal-02820038 v1