Patrice Baa-Puyoulet

Documents

Researcher identifiers

pbaapuyoulet
0000-0002-7033-7245

Presentation

Publications

	PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects François Renoz , Nicolas Parisot , Patrice Baa-Puyoulet , Léo Gerlin , Samir Fakhour Scientific Data , 2024, 11 (1), pp.450. ⟨10.1038/s41597-024-03297-x⟩ Journal articles hal-04705816v1
	Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum Natacha Koenig , Patrice Baa-Puyoulet , Amélie Lafont , Isis Lorenzo-Colina , Vincent Navratil Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2024, 52, pp.101323. ⟨10.1016/j.cbd.2024.101323⟩ Journal articles hal-04704294v1
	PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects François Renoz , Nicolas Parisot , Patrice Baa-Puyoulet , Léo Gerlin , Samir Fakhour Scientific Data , 2024, 11 (1), pp.450. ⟨10.1038/s41597-024-03297-x⟩ Journal articles hal-04632873v1
	Detection of Aphids on Hyperspectral Images Using One-Class SVM and Laplacian of Gaussians Sergio Peignier , Virginie Lacotte , Marie-Gabrielle Duport , Patrice Baa-Puyoulet , Jean-Christophe Simon Remote Sensing, 2023, 15 (8), pp.2103. ⟨10.3390/rs15082103⟩ Journal articles hal-04122402v1
	At the Gate of Mutualism: Identification of Genomic Traits Predisposing to Insect-Bacterial Symbiosis in Pathogenic Strains of the Aphid Symbiont Serratia symbiotica François Renoz , Vincent Foray , Jérôme Ambroise , Patrice Baa-Puyoulet , Bertrand Bearzatto Frontiers in Cellular and Infection Microbiology, 2021, 11, pp.660007. ⟨10.3389/fcimb.2021.660007⟩ Journal articles hal-03297041v1
	The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩ Journal articles hal-03627264v1
	Draft Genome Sequences of Two Cultivable Strains of the Bacterial Symbiont Serratia symbiotica François Renoz , Jérôme Ambroise , Bertrand Bearzatto , Patrice Baa-Puyoulet , Federica Calevro Microbiology Resource Announcements, 2020, 9 (10), pp.e01579-19. ⟨10.1128/MRA.01579-19⟩ Journal articles hal-02505875v1
	Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth Jessika Consuegra , Théodore Grenier , Patrice Baa-Puyoulet , Isabelle Rahioui , Houssam Akherraz PLoS Biology, 2020, 18 (3), pp.e3000681. ⟨10.1371/journal.pbio.3000681⟩ Journal articles hal-02919023v1
	The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩ Journal articles hal-02917617v1
	Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera Jan Philip Oeyen , Patrice Baa-Puyoulet , Joshua Benoit , Leo Beukeboom , Erich Bornberg-Bauer Genome Biology and Evolution, 2020, 12 (7), pp.1099-1118. ⟨10.1093/gbe/evaa106⟩ Journal articles hal-02618254v1
	Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome Kristen Panfilio , Iris Vargas Jentzsch , Joshua Benoit , Deniz Erezyilmaz , Yuichiro Suzuki Genome Biology, 2019, 20 (1), pp.64. ⟨10.1186/s13059-019-1660-0⟩ Journal articles hal-02139052v1
	Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum Stefano Colella , Nicolas Parisot , Pierre Simonet , Karen Gaget , Gabrielle Duport Frontiers in Physiology, 2018, 9, pp.1498. ⟨10.3389/fphys.2018.01498⟩ Journal articles hal-01905508v1
	Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩ Journal articles hal-01588181v1
	Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩ Journal articles hal-01500475v1
	ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods Patrice Baa-Puyoulet , Nicolas Parisot , Gérard Febvay , Jaime Huerta-Cepas , Augusto F Vellozo Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩ Journal articles hal-01352558v1
	Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development Andréane Rabatel , Gérard Febvay , Karen Gaget , Gabrielle Duport , Patrice Baa-Puyoulet BMC Genomics, 2013, 14 (1), pp.235. ⟨10.1186/1471-2164-14-235⟩ Journal articles hal-00824527v1
	CycADS: an annotation database system to ease the development and update of BioCyc databases. Augusto F Vellozo , Amélie S Véron , Patrice Baa-Puyoulet , Jaime Huerta-Cepas , Ludovic Cottret Database - The journal of Biological Databases and Curation, 2011, 2011, pp.bar008. ⟨10.1093/database/bar008⟩ Journal articles hal-00632965v1

	Modélisation du métabolisme et des interactions symbiotiques chez les pucerons Léo Gerlin , Patrice Baa-Puyoulet , Federica Calevro , Hubert Charles Journée de l'Enjeu Santé Globale et Bioingénierie de l'INSA, Apr 2023, Villeurbane, France Conference papers hal-04121080v1
	A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb Nicolas Parisot , Mélanie Ribeiro Lopes , Hubert Charles , Sergio Peignier , Patrice Baa-Puyoulet BAPOA 2023 - 13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés, Nov 2023, Villeurbanne, France Conference papers hal-04524595v1
	Deciphering growth/nutrition dynamics at the aphid – symbiont interface through metabolic modeling Léo Gerlin , Patrice Baa-Puyoulet , Karen Gaget , Isabelle Rahioui , Marie-Gabrielle Duport 3e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Conference papers hal-04524579v1
	Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications Mélanie Ribeiro Lopes , Jousselin Emmanuelle , Patrice Baa-Puyoulet , C. Huygens , Karen Gaget Incontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy Conference papers hal-03514196v1
	Intégration de données multi-omiques pour l’identification d’enzymes clés du métabolisme lipidique chez l’espèce sentinelle Gammarus fossarum Natacha Koenig , Patrice Baa-Puyoulet , Maxime Leprêtre , Jean-Charles Gaillard , J. Armengaud GDR Ecotoxicologie, Nov 2021, Rennes, France Conference papers hal-03810311v1
	The challenge of annotating and reconstructing metabolic networks for the comprehension of the physiology of aphids and other insects Hubert Charles , Patrice Baa-Puyoulet 2. Annual meeting of Japan-France Plant-Insect-Symbiont Interaction network (PISI-net), Nov 2019, Le Rheu, France Conference papers hal-03513078v1
	AphidCyc, une collection de bases de données métaboliques dédiée à l'étude et la comparaison du métabolisme chez les pucerons Patrice Baa-Puyoulet , Hubert Charles , Federica Calevro 11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France Conference papers hal-03510642v1
	Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels Federica Calevro , Nicolas Parisot , Mélanie Ribeiro Lopes , Stefano Colella , Karen Gaget 11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France Conference papers hal-03514026v1
	Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum Nicolas Parisot , Stefano Colella , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France Conference papers hal-03514034v1
	Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum Nicolas Parisot , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France Conference papers hal-03514051v1
	Atelier Bases de données génomiques et métaboliques : présentation des bases BioCyc développées dans l’UMR BF2I Hubert Charles , Patrice Baa-Puyoulet 11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA),, Nov 2018, Rennes, France Conference papers hal-03510598v1
	Effecteurs et inhibiteurs de l’apoptose chez le puceron du pois : annotation et implication dans la mort cellulaire bactériocytaire Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Severine Balmand 10. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2017, Colmar, France Conference papers hal-03506807v1
	Systems biology of symbiosis: from partners’ genomics to physiology of interactions Hubert Charles , Federica Calevro , Gérard Febvay , Patrice Baa-Puyoulet , Marie-Gabrielle Duport First Meeting of the PRC Israel-France, Sep 2016, Villeurbanne, France Conference papers hal-03506791v1
	Life history traits and tissue-specific gene expression changes underlying the symbiotic pea aphid resilience to a tyrosine and phenylalanine depleted diet Nicolas Parisot , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet 9. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2016, Amiens, France Conference papers hal-03506796v1
	From SymbAphidBase to SymbAphidCyc: two companion databases to study and compare aphid symbionts from genomes to metabolic pathways Patrice Baa-Puyoulet , Mathieu Labernardiere , Nicolas Parisot , Jean-Pierre Gauthier , Gérard Febvay JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France. 1 p Conference papers hal-01208786v1
	SymbAphidBase : une base de données nouvelle dédiée aux symbiotes de pucerons pour stocker et visualiser les génomes séquencés en standardisant leurs annotations Mathieu Labernardiere , Patrice Baa-Puyoulet , Jean-Pierre Gauthier , Gérard Febvay , Federica Calevro 7. Rencontres du réseau Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). Le Rheu, FRA., Nov 2014, Avignon, France. 1 p Conference papers hal-01208785v1
	Symbiose puceron – Buchnera : approche métabolomique chez Acyrthosiphon pisum Marjolaine Rey , Floriant Bellvert , Marie-Gabrielle Duport , Patrice Baa-Puyoulet , Federica Calevro 6èmes journées du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés, Oct 2013, Montpellier, France Conference papers hal-03506758v1
	Analyse métabolomique de la symbiose entre le puceron Acyrthosiphon pisum et la bactérie Buchnera aphidicola Marjolaine Rey , Floriant Bellvert , Marie-Gabrielle Duport , Patrice Baa-Puyoulet , Federica Calevro 7èmes Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France Conference papers hal-03506751v1
	The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc Patrice Baa-Puyoulet , Augusto F. Vellozo , Jaime Huerta-Cepas , Gérard Febvay , Toni Gabaldon 13. Journées Ouvertes en Biologie, Informatique et Mathématiques, Institut National de Recherche en Informatique et en Automatique (INRIA). Rennes, FRA., Jul 2012, Rennes, France. Pagination multiple Conference papers hal-02747415v1
	ArthropodaCyc: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods Patrice Baa-Puyoulet , Augusto F Vellozo , Jaime Huerta-Cepas , Gérard Febvay , T. Gabaldon 5th Annual Arthropod Genomics Symposium "Arthropod Genomics 2011: Exploring Diversity, Relating Similarity", Jun 2011, Kansas City, United States Conference papers hal-00748601v1
	Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development Andréane Rabatel , Gérard Febvay , Karen Gaget , Gabrielle Duport , Nadia Bendridi Sixth International Symposium on Molecular Insect Science, 2011, Amsterdam, Netherlands Conference papers hal-00748785v1
	Exploration génomique et fonctionnelle des insectes et de leurs partenaires symbiotiques Hubert Charles , Stefano Colella , Federica Calevro , Gérard Febvay , Yvan Rahbé Journée Sciences Croisées "Modélisation et Sciences Numériques : nouveaux instruments et opportunités", Institut National des Sciences Appliquées de Lyon (INSA Lyon). Conseil Scientifique de l'INSA, Villeurbanne, FRA., Oct 2010, Villeurbanne, France. n. p Conference papers hal-02804281v1
	CycADS: an annotation management system for the development and update of BioCyc metabolic network databases A. Vellozo , Patrice Baa-Puyoulet , A. Veron , Jaime Huerta-Cepas , Ludovic Cottret 1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE, 2009, France Conference papers hal-00496032v1

	Genome assembly of the cereal aphid Sipha maydis, a model for the study of dual endosymbiosis in insects François Renoz , Nicolas Parisot , Patrice Baa-Puyoulet , Léo Gerlin , Samir Fakhour 13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France Conference poster hal-04524568v1
	From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts. Patrice Baa-Puyoulet , Nicolas Parisot , Sergio Peignier , Federica Calevro , Hubert Charles 12. Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France Conference poster hal-03810352v1
	High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae andSodalis pierantonius endosymbiotic association Nicolas Parisot , Mariana Galvão Ferrarini , Clément Goubert , Carlos Vargas-Chávez , Agnès Vallier ISS 2022 - 10th Congress of the International Symbiosis Society, Jul 2022, Lyon, France Conference poster hal-03810657v1
	From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts Patrice Baa-Puyoulet , Nicolas Parisot , Sergio Peignier , Federica Calevro , Hubert Charles 13. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2020, Nice (virtuel), France Conference poster hal-03514174v1
	Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum Nicolas Parisot , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet UK-France joint Meeting Aphid Special Interest Group – BAPOA, Apr 2019, Harpenden, United Kingdom Conference poster hal-03741333v1
	Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis Nicolas Parisot , Stefano Colella , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport UK-France joint Meeting Aphid Special Interest Group – BAPOA, Apr 2019, Rothamsted, United Kingdom Conference poster hal-03513048v1
	Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis Carlos Vargas-Chavez , Nicolas Parisot , C. Goubert , Patrice Baa-Puyoulet , Severine Balmand VI Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma de Mallorca, Spain Conference poster hal-03514015v1
	Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis Nicolas Parisot , Stefano Colella , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport XIth European Congress of Entomology, Jul 2018, Naples, Italy Conference poster hal-03509885v1
	The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis Carlos Vargas-Chavez , Nicolas Parisot , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France Conference poster hal-03506786v1
	Annotating arthropods genome to study and compare their metabolism: the ArthropodaCyc collection of Cyc databases powered by CycADS Patrice Baa-Puyoulet , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay , Federica Calevro 13. European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , 1 p., 2014 Conference poster hal-02798101v1
	SymbAphidBase: a new database dedicated to aphid symbionts to store novel sequenced genomes and standardize their annotations Mathieu Labernardiere , Patrice Baa-Puyoulet , Jean-Pierre Gauthier , Gérard Febvay , Federica Calevro 13. European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , 1 p., 2014 Conference poster hal-02798649v1
	« ArthropodaCyc » : une collection de bases de données enrichies à l’aide de CycADS pour étudier et comparer le métabolisme des arthropodes. Patrice Baa-Puyoulet , Stefano Colella , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay 17. Colloque de Biologie de l’Insecte - CBI-2013, Oct 2013, Montpellier, France Conference poster hal-03506713v1
	The CycADS annotation database system to support the development and update of enriched BioCyc databases: development of ad hoc BioCyc DB (AcypiCyc, ArthropodaCyc Patrice Baa-Puyoulet , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay , Federica Calevro 8. Meeting of the International Aphid Genomics Consortium, Jan 2013, Harpenden, United Kingdom Conference poster hal-03506707v1
	The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc Patrice Baa-Puyoulet , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay , Toni Gabaldon 5. Réunion Réseau BAPOA, Nov 2012, Villeurbanne, France. 2012 Conference poster hal-02806092v1
	Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development Andréane Rabatel , Gérard Febvay , Karen Gaget , Marie-Gabrielle Duport , Nadia Bendridi 6. International Symposium on Molecular Insect Science, Oct 2011, Amsterdam, Netherlands. Elsevier, 2011, Conference poster hal-02747829v1
	Using the “CycADS” annotation management system to develop a BioCyc metabolic network database for sequenced arthropods genomes: first steps towards “ArthropodsCyc” Patrice Baa-Puyoulet , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay , Toni Gabaldon Rencontres bioinformaticiens et statisticiens de l’INRA, Mar 2011, Versailles, France. 1 p., 2011 Conference poster hal-02806205v1
	“ArthropodaCyc”: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods Patrice Baa-Puyoulet , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay , Toni Gabaldon 5. Annual Arthropod Genomics Symposium “Arthropod Genomics 2011: Exploring Diversity, Relating Similarity”, Jun 2011, Kansas City, United States. , 33 p., 2011, Fifth Annual Arthropod Genomics Symposium Conference poster hal-02749029v1
	Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development Andréane Rabatel , Gérard Febvay , Karen Gaget , Marie-Gabrielle Duport , Nadia Bendridi 4. Réunion Réseau BAPOA, Nov 2011, Paris, France. 1 p., 2011 Conference poster hal-02805925v1
	Using the “CycADS” annotation management system to develop a BioCyc metabolic network database for sequenced arthropods genomes: first steps towards “ArthropodsCyc” Augusto Vellozo , Patrice Baa-Puyoulet , Jaime Huerta-Cepas , Gérard Febvay , Federica Calevro 4. Annual Arthropod Genomics Symposium on “Arthropod Genomics: New Approaches and Outcomes”, Jun 2010, Kansas City, United States. 45 p., 2010, Fourth Annual Arthropod Genomics Symposium Conference poster hal-02753908v1
	A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources Fabrice Legeai , Stefano Colella , Jaime Huerta-Cepas , Jean-Pierre Gauthier , Augusto Vellozo 10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom. 1 p., 2010 Conference poster hal-01231276v1

Patrice Baa-Puyoulet

Presentation

Publications

PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects

Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum

PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects

Detection of Aphids on Hyperspectral Images Using One-Class SVM and Laplacian of Gaussians

At the Gate of Mutualism: Identification of Genomic Traits Predisposing to Insect-Bacterial Symbiosis in Pathogenic Strains of the Aphid Symbiont Serratia symbiotica

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Draft Genome Sequences of Two Cultivable Strains of the Bacterial Symbiont Serratia symbiotica

Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development

CycADS: an annotation database system to ease the development and update of BioCyc databases.

Modélisation du métabolisme et des interactions symbiotiques chez les pucerons

A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb

Deciphering growth/nutrition dynamics at the aphid – symbiont interface through metabolic modeling

Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications

Intégration de données multi-omiques pour l’identification d’enzymes clés du métabolisme lipidique chez l’espèce sentinelle Gammarus fossarum

The challenge of annotating and reconstructing metabolic networks for the comprehension of the physiology of aphids and other insects

AphidCyc, une collection de bases de données métaboliques dédiée à l'étude et la comparaison du métabolisme chez les pucerons

Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Atelier Bases de données génomiques et métaboliques : présentation des bases BioCyc développées dans l’UMR BF2I

Effecteurs et inhibiteurs de l’apoptose chez le puceron du pois : annotation et implication dans la mort cellulaire bactériocytaire

Systems biology of symbiosis: from partners’ genomics to physiology of interactions

Life history traits and tissue-specific gene expression changes underlying the symbiotic pea aphid resilience to a tyrosine and phenylalanine depleted diet

From SymbAphidBase to SymbAphidCyc: two companion databases to study and compare aphid symbionts from genomes to metabolic pathways

SymbAphidBase : une base de données nouvelle dédiée aux symbiotes de pucerons pour stocker et visualiser les génomes séquencés en standardisant leurs annotations

Symbiose puceron – Buchnera : approche métabolomique chez Acyrthosiphon pisum

Analyse métabolomique de la symbiose entre le puceron Acyrthosiphon pisum et la bactérie Buchnera aphidicola

The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc

ArthropodaCyc: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods

Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development

Exploration génomique et fonctionnelle des insectes et de leurs partenaires symbiotiques

CycADS: an annotation management system for the development and update of BioCyc metabolic network databases

Genome assembly of the cereal aphid Sipha maydis, a model for the study of dual endosymbiosis in insects

From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts.

High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae andSodalis pierantonius endosymbiotic association

From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis

The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Annotating arthropods genome to study and compare their metabolism: the ArthropodaCyc collection of Cyc databases powered by CycADS

SymbAphidBase: a new database dedicated to aphid symbionts to store novel sequenced genomes and standardize their annotations

« ArthropodaCyc » : une collection de bases de données enrichies à l’aide de CycADS pour étudier et comparer le métabolisme des arthropodes.

The CycADS annotation database system to support the development and update of enriched BioCyc databases: development of ad hoc BioCyc DB (AcypiCyc, ArthropodaCyc

The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc

Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development

Using the “CycADS” annotation management system to develop a BioCyc metabolic network database for sequenced arthropods genomes: first steps towards “ArthropodsCyc”

“ArthropodaCyc”: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods

Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development

Using the “CycADS” annotation management system to develop a BioCyc metabolic network database for sequenced arthropods genomes: first steps towards “ArthropodsCyc”

A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources