Philippe Deschamps

36
Documents

Publications

Publications

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Parasitic connections: a patescibacterial epibiont, its methylotrophic gammaproteobacterial host, and their phages

Feriel Bouderka , Purificación López-García , Philippe Deschamps , Yifan Zhou , Mart Krupovic et al.

mBio, In press, ⟨10.1128/mbio.00025-26⟩

Article dans une revue hal-05555718v1
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Molecular Phylogeny of the SELMA Translocation Machinery Recounts the Evolution of Complex Photosynthetic Eukaryotes

Rafael Ponce-Toledo , David Moreira , Purificación López-García , Philippe Deschamps

Molecular Biology and Evolution, 2025, 42 (9), ⟨10.1093/molbev/msaf167⟩

Article dans une revue hal-05387665v1
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An alternative pathway to starch granule initiation unraveled in Chlamydomonas reinhardtii

Adeline Courseaux , Philippe Deschamps , David Dauvillée

Plant and Cell Physiology, 2025, ⟨10.1093/pcp/pcaf019⟩

Article dans une revue hal-04931710v1
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BE3 is the major branching enzyme isoform required for amylopectin synthesis in Chlamydomonas reinhardtii

Adeline Courseaux , Océane George , Philippe Deschamps , Coralie Bompard , Thierry Duchêne et al.

Frontiers in Plant Science, 2023, 14, pp.1201386. ⟨10.3389/fpls.2023.1201386⟩

Article dans une revue hal-04112980v1
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Metagenome-derived virus-microbe ratios across ecosystems

Purificación López-García , Ana Gutiérrez-Preciado , Mart Krupovic , Maria Ciobanu , Philippe Deschamps et al.

The International Society of Microbiologial Ecology Journal, 2023, 17 (10), pp.1552-1563. ⟨10.1038/s41396-023-01431-y⟩

Article dans une revue hal-04108767v1
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Core microbial communities of lacustrine microbialites sampled along an alkalinity gradient

Miguel Iniesto , David Moreira , Guillaume Reboul , Philippe Deschamps , Karim Benzerara et al.

Environmental Microbiology, 2021, 23, pp.51-68. ⟨10.1111/1462-2920.15252⟩

Article dans une revue hal-02988545v1
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Archaeal overdominance close to life-limiting conditions in geothermally influenced hypersaline lakes at the Danakil Depression, Ethiopia

Jodie Belilla , Miguel Iniesto , David Moreira , Karim Benzerara , José María López‐garcía et al.

Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15771⟩

Article dans une revue hal-03384106v1
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Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns

Gwendoline David , Purificación López‐garcía , David Moreira , Benjamin Alric , Philippe Deschamps et al.

Molecular Ecology, 2021, 30 (9), pp.2162-2177. ⟨10.1111/mec.15864⟩

Article dans une revue hal-03327969v1
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Large-scale geography survey provides insights into the colonization history of a major aphid pest on its cultivated apple host in Europe, North America and North Africa

S.G. Olvera-Vazquez , C. Remoué , A. Venon , A. Rousselet , O. Grandcolas et al.

Peer Community Journal, 2021, 1, pp.e34. ⟨10.24072/pcjournal.26⟩

Article dans une revue hal-03605093v1
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Secondary Plastids of Euglenids and Chlorarachniophytes Function with a Mix of Genes of Red and Green Algal Ancestry

Rafael I Ponce-Toledo , David Moreira , Purificacion Lopez-Garcia , Philippe Deschamps

Molecular Biology and Evolution, 2018, 35 (9), pp.2198-2204. ⟨10.1093/molbev/msy121⟩

Article dans une revue hal-02108901v1
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Functional shifts in microbial mats recapitulate early Earth metabolic transitions

Ana Gutiérrez-Preciado , Aurélien Saghaï , David Moreira , Yvan Zivanovic , Philippe Deschamps et al.

Nature Ecology & Evolution, 2018, 2 (11), pp.1700-1708. ⟨10.1038/s41559-018-0683-3⟩

Article dans une revue hal-02996248v1

The Chlamydomonas mex1 mutant shows impaired starch mobilization without maltose accumulation

Justin Findinier , Hande Tunçay , Miriam Schulz-Raffelt , Philippe Deschamps , Corentin Spriet et al.

Journal of Experimental Botany, 2017, 68 (18), pp.5177-5189. ⟨10.1093/jxb/erx343⟩

Article dans une revue cea-02023216v1

Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond

Aurélien Saghaï , Ana Gutiérrez-Preciado , Philippe Deschamps , David Moreira , Paola Bertolino et al.

Environmental Microbiology, 2017, 19 (6), pp.2405-2421. ⟨10.1111/1462-2920.13754⟩

Article dans une revue hal-03872172v1
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An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids

Rafael I Ponce-Toledo , Philippe Deschamps , Purificación López-García , Yvan Zivanovic , Karim Benzerara et al.

Current Biology, 2017, 27 (3), pp.386-391. ⟨10.1016/j.cub.2016.11.056⟩

Article dans une revue hal-01741643v1
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Resilience of Freshwater Communities of Small Microbial Eukaryotes Undergoing Severe Drought Events

Marianne Simon , Purificación López-García , Philippe Deschamps , Gwendal Restoux , Paola Bertolino et al.

Frontiers in Microbiology, 2016, 7, pp.812. ⟨10.3389/fmicb.2016.00812⟩

Article dans une revue hal-01587905v1
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Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites

Aurélien Saghaï , Yvan Zivanovic , Nina Zeyen , David Moreira , Karim Benzerara et al.

Frontiers in Microbiology, 2015, 6, pp.797. ⟨10.3389/fmicb.2015.00797⟩

Article dans une revue hal-01221204v1

Bacterial gene import and mesophilic adaptation in archaea

Purificación López-García , Yvan Zivanovic , Philippe Deschamps , David Moreira

Nature Reviews Microbiology, 2015, 13 (7), pp.447 - 456. ⟨10.1038/nrmicro3485⟩

Article dans une revue hal-01438307v1

Extending the conserved phylogenetic core of \textitarchaea disentangles the evolution of the third domain of life

C. Petitjean , P. Deschamps , P. Lopez-Garcia , D. Moreira , Céline Brochier-Armanet

Molecular Biology and Evolution, 2015, 32, pp.1242-54

Article dans une revue hal-02025628v1
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Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems

Marianne Simon , Ludwig Jardillier , Philippe Deschamps , David Moreira , Gwendal Restoux et al.

Environmental Microbiology, 2015, 17 (10), pp.3610-3627. ⟨10.1111/1462-2920.12591⟩

Article dans une revue hal-03022575v1
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Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria

Kamil M. Szafranski , Philippe Deschamps , Marina R. Cunha , Sylvie Marylène Gaudron , Sébastien Duperron

Frontiers in Microbiology, 2015, 6, pp.162. ⟨10.3389/fmicb.2015.00162⟩

Article dans une revue hal-01221485v1

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

Charles Bachy , John R. Dolan , Purificación López-García , Philippe Deschamps , David Moreira

The International Society of Microbiologial Ecology Journal, 2013, 7 (2), pp.244-255. ⟨10.1038/ismej.2012.106⟩

Article dans une revue hal-03502641v1
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Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Jonas Collén , Betina Porcel , Wilfrid Carré , Steven G Ball , Cristian Chaparro et al.

Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩

Article dans une revue hal-01073830v1

Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Céline Brochier-Armanet , Philippe Deschamps , Purificación López-García , Yvan Zivanovic , Francisco Rodríguez-Valera et al.

The International Society of Microbiologial Ecology Journal, 2011, 5 (8), pp.1291-302. ⟨10.1038/ismej.2011.16⟩

Article dans une revue hal-00662567v1

Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis.

Christophe Colleoni , Marc Linka , Philippe Deschamps , Michael G Handford , Paul Dupree et al.

Molecular Biology and Evolution, 2010, epub ahead of print. ⟨10.1093/molbev/msq158⟩

Article dans une revue hal-00495914v1
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Genetic dissection of floridean starch synthesis in the cytosol of the model dinoflagellate Crypthecodinium cohnii.

David Dauvillée , Philippe Deschamps , Jean-Philippe Ral , Charlotte Plancke , Jean-Luc Putaux et al.

Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (50), pp.21126-21130. ⟨10.1073/pnas.0907424106⟩

Article dans une revue hal-00436589v1

The relocation of starch metabolism to chloroplasts: when, why and how.

Philippe Deschamps , Ilka Haferkamp , Christophe d'Hulst , H Ekkehard Neuhaus , Steven G Ball

Trends in Plant Science, 2008, epub ahead of print. ⟨10.1016/j.tplants.2008.08.009⟩

Article dans une revue istex hal-00326081v1

The heterotrophic dinoflagellate Crypthecodinium cohnii defines a model genetic system to investigate cytoplasmic starch synthesis.

Philippe Deschamps , Delphine Guillebeault , Jimi Devassine , David Dauvillée , Sophie Haebel et al.

Eukaryotic Cell, 2008, 7 (5), pp.872-80. ⟨10.1128/EC.00461-07⟩

Article dans une revue hal-00267765v1

Early Gene Duplication within Chloroplastida and its correspondence with Relocation of Starch Metabolism to Chloroplasts.

Philippe Deschamps , Hervé Moreau , Alexandra Z Worden , David Dauvillée , Steven Ball

Genetics, 2008, 178, pp.2373-2387. ⟨10.1534/genetics.108.087205⟩

Article dans une revue hal-00247313v1

THE PATHWAY OF CYTOSOLIC STARCH SYNTHESIS IN THE MODEL GLAUCOPHYTE CYANOPHORA PARADOXA.

Charlotte Plancke , Christophe Colleoni , Philippe Deschamps , David Dauvillée , Yasunori Nakamura et al.

Eukaryotic Cell, 2007, 7 (2), epub ahead of print. ⟨10.1128/EC.00373-07⟩

Article dans une revue hal-00198810v1

Metabolic Symbiosis and the Birth of the Plant Kingdom.

Philippe Deschamps , Christophe Colleoni , Yasunori Nakamura , Eiji Suzuki , Jean-Luc Putaux et al.

Molecular Biology and Evolution, 2007, 25 (3), epub ahead of print. ⟨10.1093/molbev/msm280⟩

Article dans une revue hal-00250123v1

Nature of the periplastidial pathway of starch synthesis in the cryptophyte Guillardia theta.

Philippe Deschamps , Ilka Haferkamp , David Dauvillée , Sophie Haebel , Martin Steup et al.

Eukaryotic Cell, 2006, 5 (6), pp.954-63. ⟨10.1128/EC.00380-05⟩

Article dans une revue hal-00198811v1

Circadian clock regulation of starch metabolism establishes GBSSI as a major contributor to amylopectin synthesis in Chlamydomonas reinhardtii

Jean-Philippe Ral , Christophe Colleoni , Fabrice Wattebled , David Dauvillee , Clement Nempont et al.

Plant Physiology, 2006, 142, pp.305-317

Article dans une revue hal-00092079v1

Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii

David Dauvillee , Vincent Chochois , Martin Steup , Sophie Haebel , Nora Eckermann et al.

The Plant Journal, 2006, 48, pp.274-285

Article dans une revue hal-00092272v1

Molecular and Biochemical Analysis of Periplastidial Starch Metabolism in the Cryptophyte Guillardia theta

Ilka Haferkamp , Philippe Deschamps , Michelle Ast , Wolfgang Jeblick , Uwe Maier et al.

Eukaryotic cell., 2006, 5, pp.964-971

Article dans une revue hal-00085428v1

The Comparative, Biochemistry, Genetics and Evolution of Starch Metabolism in Chlamydomonas reinhardtii

Philippe Deschamps , Steven Ball , David Dauvillee

Goodenough, Ursula; Grossman, Arthur; Wollman, Francis-André. The Chlamydomonas Sourcebook: Volume 2 Organellar and Metabolic Processes 3rd edition, Elsevier, 2022, 9780128224571. ⟨10.1016/C2019-0-02810-5⟩

Chapitre d'ouvrage hal-03798391v1

Genome Sequence Databases: Types of Data and Bioinformatic Tools

Ana Gutiérrez-Preciado , Philippe Deschamps , Tom Delmont , Claudia Chica , Nathan A.M. Chrismas et al.

Reference Module in Biomedical Sciences, Elsevier, 2019, ⟨10.1016/b978-0-12-801238-3.99223-7⟩

Chapitre d'ouvrage hal-02378810v1