Pierre-Alexandre Gagnaire

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Publications

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Genome divergence between European anchovy ecotypes fuelled by structural variants originating from trans-equatorial admixture

Laura Meyer , Pierre Barry , Alan Le Moan , Christine Arbiol , Rita Castilho et al.

Proceedings of the Royal Society B: Biological Sciences, 2025, 292 (2058), ⟨10.1098/rspb.2025.1416⟩

Article dans une revue hal-05348288v1

A mosaic of modular variation at a single gene underpins convergent plumage coloration

Dave Lutgen , Valentina Peona , Madeline Chase , Niloofar Alaei Kakhki , Fritjof Lammers et al.

Science, 2025, 390 (6770), ⟨10.1126/science.ado8005⟩

Article dans une revue (data paper) hal-05544508v1

Comparative Population Genomics Unveils Congruent Secondary Suture Zone in Southwest Pacific Hydrothermal Vents

Adrien Tran Lu Y , Stéphanie Ruault , Claire Daguin-Thiebaut , Anne-Sophie Le Port , Marion Ballenghien et al.

Molecular Biology and Evolution, 2025, 42 (2), ⟨10.1093/molbev/msaf024⟩

Article dans une revue hal-05557471v1
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PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids fish

Marie Raynaud , Paola Sanna , Julien Joseph , Julie A. J. Clément , Yukiko Imai et al.

PLoS Biology, 2025, 23 (1), pp.e3002950. ⟨10.1371/journal.pbio.3002950⟩

Article dans une revue hal-04880059v1
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Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents

Adrien Tran Lu Y , Stéphanie Ruault , Claire Daguin-Thiébaut , Anne‐sophie Le Port , Marion Ballenghien et al.

Molecular Biology and Evolution, 2025, 42 (2), pp.msaf024. ⟨10.1093/molbev/msaf024⟩

Article dans une revue hal-04973623v2

High residual additive genetic variability in a Pacific blue shrimp Litopenaeus stylirostris population after 36 generations of domestication from only 4 estimated founders

Pierrick Haffray , F. Enez , H. Mahunon , B. Lorgeoux , P.P. Blanc et al.

Aquaculture, 2025, 609, pp.742835. ⟨10.1016/j.aquaculture.2025.742835⟩

Article dans une revue hal-05168308v1

Sex chromosomes and chromosomal rearrangements are key to behavioural sexual isolation in Jaera albifrons marine isopods

Ambre Ribardiere , Claire Daguin-Thiebaut , Jerome Coudret , Gildas Le Corguille , Komlan Avia et al. Article dans une revue hal-05557629v1
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Divergence and gene flow history at two large chromosomal inversions underlying ecotype differentiation in the long‐snouted seahorse

Laura Meyer , Pierre Barry , Florentine Riquet , Andrew Foote , Anaïs Bordes et al.

Molecular Ecology, 2024, 33 (24), pp.e17277. ⟨10.1111/mec.17277⟩

Article dans une revue hal-04788167v1

Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents

Adrien Tran Lu Y , Stéphanie Ruault , Claire Daguin-Thiébaut , Anne-Sophie Le Port , Marion Ballenghien et al.

Frontiers in Ecology and Evolution, 2024, 12 (42), pp.18969-18979. ⟨10.1101/2024.05.31.596862⟩

Article dans une revue hal-05013556v1

The fate of a polygenic phenotype within the genomic landscapes of introgression in the European seabass hybrid zone

Maeva Leitwein , G Durif , E Delpuech , P Gagnaire , B Ernande et al.

Molecular Biology and Evolution, 2024, 41 (9), pp.msae194. ⟨10.1093/molbev/msae194⟩

Article dans une revue hal-04705605v1
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Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study

Marie Raynaud , Pierre-Alexandre Gagnaire , Nicolas Galtier

Peer Community Journal, 2023, 3, pp.e27. ⟨10.24072/pcjournal.254⟩

Article dans une revue hal-03879740v1
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Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha

Jade Castel , Stéphane Hourdez , Florence Pradillon , Claire Daguin-Thiébaut , Marion Ballenghien et al.

Genes, 2022, 13 (6), pp.985. ⟨10.3390/genes13060985⟩

Article dans une revue hal-03771381v1
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Age-specific survivorship and fecundity shape genetic diversity in marine fishes

Pierre Barry , Thomas Broquet , Pierre-Alexandre Gagnaire

Evolution Letters, 2022, 6 (1), pp.46-62. ⟨10.1002/evl3.265⟩

Article dans une revue hal-03443785v2
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Introgression between highly divergent sea squirt genomes: an adaptive breakthrough?

Christelle Fraïsse , Alan Le Moan , Camille Roux , Guillaume Dubois , Claire Daguin-Thiébaut et al.

Peer Community Journal, 2022, 2, pp.e54. ⟨10.24072/pcjournal.172⟩

Article dans une revue hal-03817700v1
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Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei

Adrien Tran Y. Lu , Stephanie Ruault , Claire Daguin-Thiébaut , Jade Castel , Nicolas Bierne et al.

Molecular Ecology, 2022, 31 (10), pp.2796-2813. ⟨10.1111/mec.16430⟩

Article dans une revue hal-03669635v1
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Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish

Israel Guerrero-Cózar , Jessica Gomez-Garrido , Concha Berbel , Juan Martinez-Blanch , Tyler Alioto et al.

Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-92601-5⟩

Article dans une revue hal-03443762v1
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Systematics of European coastal anchovies (genus Engraulis Cuvier)

François Bonhomme , Laura Meyer , Christine Arbiol , Daniela Bănaru , Lilia Bahri‐sfar et al.

Journal of Fish Biology, 2021, 100 (2), pp.594-600. ⟨10.1111/jfb.14964⟩

Article dans une revue hal-03589330v1
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Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen et al.

Aquaculture, 2021, 530, pp.735930. ⟨10.1016/j.aquaculture.2020.735930⟩

Article dans une revue hal-03544239v1
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Spatial gradients of introgressed ancestry reveal cryptic connectivity patterns in a high gene flow marine fish

Tony Robinet , Valérie Roussel , Karine Cheze , Pierre-Alexandre Gagnaire

Molecular Ecology, 2020, ⟨10.1111/mec.15611⟩

Article dans une revue hal-02925509v1
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The contribution of ancient admixture to reproductive isolation between European sea bass lineages

Maud Duranton , François Allal , Sophie Valière , Olivier Bouchez , François Bonhomme et al.

Evolution Letters, 2020, 4 (3), pp.226-242. ⟨10.1002/evl3.169⟩

Article dans une revue hal-03065745v1
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Genetic characterization of cupped oyster resources in Europe using informative single nucleotide polymorphism (SNP) panels

Sylvie Lapègue , Serge Heurtebise , Florence Cornette , Erwan Guichoux , Pierre-Alexandre Gagnaire

Genes, 2020, 11 (4), pp.1-17. ⟨10.3390/genes11040451⟩

Article dans une revue hal-03065752v1
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Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream

Carine Rey , Audrey M. Darnaude , Franck Ferraton , Bruno Guinand , François Bonhomme et al.

Genes, 2020, 11 (4), pp.398. ⟨10.3390/genes11040398⟩

Article dans une revue hal-02887670v1

Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data

Natacha Nikolic , Shenglin Liu , Magnus W Jacobsen , Bjarni Jónsson , Louis Bernatchez et al.

Molecular Ecology, 2020, 29 (3), pp.565-577. ⟨10.1111/mec.15342⟩

Article dans une revue hal-03065758v1
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Comparative genomics approach to evolutionary process connectivity

Pierre-Alexandre Gagnaire

Evolutionary Applications, 2020, 13 (6), pp.1320-1334. ⟨10.1111/eva.12978⟩

Article dans une revue hal-03065737v1
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Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics

Keoni Saint-Pé , Maeva Leitwein , Laurence Tissot , Nicolas Poulet , Bruno Guinand et al.

BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-5958-9⟩

Article dans une revue hal-02395980v1
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Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

Florentine Riquet , Cathy Liautard‐haag , Lucy Woodall , Carmen Bouza , Patrick Louisy et al.

Evolution - International Journal of Organic Evolution, 2019, 73 (4), pp.817-835. ⟨10.1111/evo.13696⟩

Article dans une revue hal-02395914v1
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The European sea bass: a key marine fish model in the wild and in aquaculture

Marc Vandeputte , P.-A. Gagnaire , F. Allal

Animal Genetics, 2019, 50 (3), pp.195-206. ⟨10.1111/age.12779⟩

Article dans une revue hal-02395941v1
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The spatial scale of dispersal revealed by admixture tracts

Maud Duranton , François Bonhomme , Pierre-Alexandre Gagnaire

Evolutionary Applications, 2019, 12 (9), pp.1743-1756. ⟨10.1111/eva.12829⟩

Article dans une revue hal-02395949v1

Model‐based demographic inference of introgression history in European whitefish species pairs

Clément Rougeux , Pierre-Alexandre Gagnaire , Louis Bernatchez

Journal of Evolutionary Biology, 2019, 32 (8), pp.806-817. ⟨10.1111/jeb.13482⟩

Article dans une revue hal-02395921v1
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Using Haplotype Information for Conservation Genomics

Maeva Leitwein , Maud Duranton , Quentin Rougemont , Pierre-Alexandre Gagnaire , Louis Bernatchez

Trends in Ecology & Evolution, 2019, ⟨10.1016/j.tree.2019.10.012⟩

Article dans une revue hal-02395119v1

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

Sara Faggion , Marc Vandeputte , Béatrice Chatain , Pierre-Alexandre Gagnaire , François Allal

Heredity, 2019, 122 (5), pp.612-621. ⟨10.1038/s41437-018-0157-z⟩

Article dans une revue hal-02395931v1

The role of recombination on genome‐wide patterns of local ancestry exemplified by supplemented brook charr populations

Maeva Leitwein , Hugo Cayuela , Anne‐laure Ferchaud , Eric Normandeau , Pierre-Alexandre Gagnaire et al.

Molecular Ecology, 2019, 28 (21), pp.4755-4769. ⟨10.1111/mec.15256⟩

Article dans une revue hal-02395970v1

Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex

Clément Rougeux , Pierre-Alexandre Gagnaire , Kim Praebel , Ole Seehausen , Louis Bernatchez

Molecular Ecology, 2019, 28 (19), pp.4388-4403. ⟨10.1111/mec.15226⟩

Article dans une revue hal-02395961v1
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The origin and remolding of genomic islands of differentiation in the European sea bass

Maud Duranton , François Allal , Christelle Fraïsse , Nicolas Bierne , François Bonhomme et al.

Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-04963-6⟩

Article dans une revue hal-01825457v1
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Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata

Pierre-Alexandre Gagnaire , Jean-Baptiste Lamy , Florence Cornette , Serge Heurtebise , Lionel Degremont et al.

Genome Biology and Evolution, 2018, 10 (9), pp.2518-2534. ⟨10.1093/gbe/evy194⟩

Article dans une revue hal-02395878v1

Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts

Maeva Leitwein , Pierre-Alexandre Gagnaire , Erick Desmarais , Patrick Berrebi , Bruno Guinand

Molecular Ecology, 2018, 27 (17), pp.3466 - 3483. ⟨10.1111/mec.14816⟩

Article dans une revue hal-01922616v1

Genomic and geographic footprints of differential introgression between two divergent fish species (Solea spp.)

Ahmed Souissi , François Bonhomme , Manuel Manchado , Lilia Bahri-Sfar , Pierre-Alexandre Gagnaire

Heredity, 2018, 121 (6), pp.579-593. ⟨10.1038/s41437-018-0079-9⟩

Article dans une revue hal-02395886v1
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The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies

Christelle Fraïsse , Camille Roux , Pierre-Alexandre Gagnaire , Jonathan Romiguier , Nicolas Faivre et al.

PeerJ, 2018, 6, ⟨10.7717/peerj.5198⟩

Article dans une revue hal-01882981v1

Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes

Quentin Rougemont , Pierre-Alexandre Gagnaire , Charles Perrier , Clémence Genthon , Anne-Laure Besnard et al.

Molecular Ecology, 2017, 26 (1), pp.142-162. ⟨10.1111/mec.13664⟩

Article dans une revue hal-01606314v1
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Introgressive hybridization and morphological transgression in the contact zone between two Mediterranean Solea species

Ahmed Souissi , Pierre-Alexandre Gagnaire , François Bonhomme , Lilia Bahri-Sfar

Ecology and Evolution, 2017, 7 (5), pp.1394-1402. ⟨10.1002/ece3.2533⟩

Article dans une revue hal-02395842v1
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A Dense Brown Trout ( Salmo trutta ) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity

Maeva Leitwein , Bruno Guinand , Juliette Pouzadoux , Erick Desmarais , Patrick Berrebi et al.

G3, 2017, 7 (4), pp.1365 - 1376. ⟨10.1534/g3.116.038497⟩

Article dans une revue hal-01922619v1
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Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

Clément Rougeux , Louis Bernatchez , Pierre-Alexandre Gagnaire

Genome Biology and Evolution, 2017, 9 (8), pp.2057-2074. ⟨10.1093/gbe/evx150⟩

Article dans une revue hal-02395854v1
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RAD-Seq Reveals Patterns of Additive Polygenic Variation Caused by Spatially-Varying Selection in the American Eel (Anguilla rostrata)

Charles Babin , Pierre-Alexandre Gagnaire , Scott Pavey , Louis Bernatchez

Genome Biology and Evolution, 2017, 9 (11), pp.2974-2986. ⟨10.1093/gbe/evx226⟩

Article dans une revue hal-02395860v1

Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy explained by differential introgression after secondary contact

A. Le Moan , P.-A. Gagnaire , F. Bonhomme

Molecular Ecology, 2016, 25 (13), pp.3187-3202. ⟨10.1111/mec.13627⟩

Article dans une revue istex hal-02395752v1
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Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits

M. Szulkin , P.-A. Gagnaire , N. Bierne , Anne Charmantier

Molecular Ecology, 2016, 25 (2), pp.542-558. ⟨10.1111/mec.13486⟩

Article dans une revue hal-02326694v1
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Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

Pierre-Alexandre Gagnaire , Oscar Gaggiotti

Current zoology, 2016, 62 (6), pp.603-616. ⟨10.1093/cz/zow088⟩

Article dans une revue hal-02395790v1

Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations

M. Leitwein , P. Gagnaire , E. Desmarais , S. Guendouz , Marine Rohmer et al.

Journal of Fish Biology, 2016, 89 (6), pp.2717 - 2734. ⟨10.1111/jfb.13131⟩

Article dans une revue istex hal-01922655v1
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Candidate gene variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats

B. Guinand , C. Chauvel , M. Lechene , J. Tournois , C.S. Tsigenopoulos et al.

Marine Ecology Progress Series, 2016, 558, pp.115-127. ⟨10.3354/meps11851⟩

Article dans une revue hal-03046445v1

Biodiversity and distribution of leptocephali west of the Mascarene Plateau in the southwestern Indian Ocean

Michael J. Miller , Éric Feunteun , Jun Aoyama , Shun Watanabe , Mari Kuroki et al.

Progress in Oceanography, 2015, 137, pp.84-102. ⟨10.1016/j.pocean.2015.05.026⟩

Article dans une revue istex hal-01192848v1
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RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish ( Coregonus clupeaformis ) Species Pairs

Martin Laporte , Sean Rogers , Anne-Marie Dion-Côté , Eric Normandeau , Pierre-Alexandre Gagnaire et al.

G3, 2015, 5 (7), pp.1481-1491. ⟨10.1534/g3.115.019067⟩

Article dans une revue hal-02395342v1
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Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

Pierre-Alexandre Gagnaire , Thomas Broquet , Didier Aurelle , Frédérique Viard , Ahmed Souissi et al.

Evolutionary Applications, 2015, 8 (8), pp.769-786. ⟨10.1111/eva.12288⟩

Article dans une revue hal-01187735v1
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Do North Atlantic eels show parallel patterns of spatially varying selection?

Malene G Ulrik , José Martín Pujolar , Anne-Laure Ferchaud , Magnus W Jacobsen , Thomas D Als et al.

BMC Evolutionary Biology, 2014, 14 (1), pp.138. ⟨10.1186/1471-2148-14-138⟩

Article dans une revue hal-02395323v1
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European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

Mbaye Tine , Heiner Kuhl , Pierre-Alexandre Gagnaire , Bruno Louro , Erick Desmarais et al.

Nature Communications, 2014, 5 (1), ⟨10.1038/ncomms6770⟩

Article dans une revue hal-01922671v1

Population genetics of the American eel ( Anguilla rostrata ): F ST = 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species

Caroline Côté , Pierre-Alexandre Gagnaire , Vincent Bourret , Guy Verreault , Martin Castonguay et al.

Molecular Ecology, 2013, 22 (7), pp.1763-1776. ⟨10.1111/mec.12142⟩

Article dans une revue hal-02395299v1

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)

Pierre-Alexandre Gagnaire , Eric Normandeau , Scott Pavey , Louis Bernatchez

Molecular Ecology, 2013, 22 (11), pp.3036-3048. ⟨10.1111/mec.12127⟩

Article dans une revue hal-02395307v1
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The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

Nicolas Bierne , Pierre-Alexandre Gagnaire , Patrice David

Current zoology, 2013, 59 (1), pp.72 - 86. ⟨10.1093/czoolo/59.1.72⟩

Article dans une revue hal-02395293v1

Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish ( Coregonus clupeaformis ) species pairs as revealed by next-generation sequencing

Scott Pavey , Maelle Sevellec , William Adam , Eric Normandeau , Fabien Lamaze et al.

Molecular Ecology, 2013, 22 (14), pp.3833-3849. ⟨10.1111/mec.12358⟩

Article dans une revue istex hal-02395312v1

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

Pierre-Alexandre Gagnaire , Scott Pavey , Eric Normandeau , Louis Bernatchez

Evolution - International Journal of Organic Evolution, 2013, 67 (9), pp.2483-2497. ⟨10.1111/evo.12075⟩

Article dans une revue istex hal-02395314v1

The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel ( Anguilla rostrata )

Pierre-Alexandre Gagnaire , Eric Normandeau , Caroline Côté , Michael Møller Hansen , Louis Bernatchez

Genetics, 2012, 190 (2), pp.725-736. ⟨10.1534/genetics.111.134825⟩

Article dans une revue hal-02395275v1

Microsatellite length variation in candidate genes correlates with habitat in the gilthead sea bream Sparus aurata

Lamya Chaoui , Pierre-Alexandre Gagnaire , Bruno Guinand , Jean-Pierre Quignard , Costas Tsigenopoulos et al.

Molecular Ecology, 2012, 21 (22), pp.5497 - 5511. ⟨10.1111/mec.12062⟩

Article dans une revue istex hal-01922723v1

Comparative Genomics Reveals Adaptive Protein Evolution and a Possible Cytonuclear Incompatibility between European and American Eels

Pierre-Alexandre Gagnaire , Eric Normandeau , Louis Bernatchez

Molecular Biology and Evolution, 2012, 29 (10), pp.2909-2919. ⟨10.1093/molbev/mss076⟩

Article dans une revue hal-02395279v1
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RNA/DNA ratios in American glass eels ( Anguilla rostrata ): evidence for latitudinal variation in physiological status and constraints to oceanic migration?

Simon Laflamme , Caroline Côté , Pierre-Alexandre Gagnaire , Martin Castonguay , Louis Bernatchez

Ecology and Evolution, 2012, 2 (5), pp.875-884. ⟨10.1002/ece3.212⟩

Article dans une revue hal-02395286v1

Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor

Yuki Minegishi , Pierre-Alexandre Gagnaire , Jun Aoyama , Pierre Bosc , Eric Feunteun et al.

Journal of Biogeography, 2012, 39 (2), pp.408-420. ⟨10.1111/j.1365-2699.2011.02603.x⟩

Article dans une revue istex hal-02395267v1

WITHIN-POPULATION STRUCTURE HIGHLIGHTED BY DIFFERENTIAL INTROGRESSION ACROSS SEMIPERMEABLE BARRIERS TO GENE FLOW IN ANGUILLA MARMORATA

Pierre-Alexandre Gagnaire , Yuki Minegishi , Saliha Zenboudji , Pierre Valade , Jun Aoyama et al.

Evolution - International Journal of Organic Evolution, 2011, 65 (12), pp.3413-3427. ⟨10.1111/j.1558-5646.2011.01404.x⟩

Article dans une revue hal-02395262v1

Multiplex PCR assay to discriminate four neighbouring species of the Calliptamus genus (Orthoptera: Acrididae) from France

E. Blanchet , L. Blondin , Pierre-Alexandre Gagnaire , A. Foucart , J.M. Vassal et al.

Bulletin of Entomological Research, 2010, 100 (6), pp.701-706. ⟨10.1017/S0007485310000052⟩

Article dans une revue istex hal-02395257v1
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ASSESSMENT OF CRYPTIC SPECIES DIVERSITY WITHIN BLOOMS AND CYST BANK OF THE ALEXANDRIUM TAMARENSE COMPLEX (DINOPHYCEAE) IN A MEDITERRANEAN LAGOON FACILITATED BY SEMI-MULTIPLEX PCR

Benjamin Genovesi , Mi-Sun Shin-Grzebyk , Daniel Grzebyk , Mohamed Laabir , Pierre-Alexandre Gagnaire et al.

Journal of Plankton Research, 2010, ⟨10.1093/plankt/FBQ127⟩

Article dans une revue hal-00632294v1

Ocean currents drive secondary contact between Anguilla marmorata populations in the Indian Ocean

Pierre-Alexandre Gagnaire , Y. Minegishi , J. Aoyama , Elodie Reveillac , Tony Robinet et al.

Marine Ecology Progress Series, 2009, 379, pp.267-278. ⟨10.3354/meps07895⟩

Article dans une revue halsde-00372244v1

Development of a key using morphological characters to distinguish south-western Indian Ocean anguillid glass eels

Elodie Reveillac , Pierre-Alexandre Gagnaire , Raymonde R. Lecomte-Finiger , Patrick Berrebi , Tony Robinet et al.

Journal of Fish Biology, 2009, 74 (9), pp.2171-2177. ⟨10.1111/j.1095-8649.2009.02284.x⟩

Article dans une revue istex halsde-00420526v1

Natural selection influences AFLP intraspecific genetic variability and introgression patterns in Atlantic eels

Pierre-Alexandre Gagnaire , V. Albert , B. Jónsson , Louis Bernatchez

Molecular Ecology, 2009, 18 (8), pp.1678 - 1691. ⟨10.1111/j.1365-294X.2009.04142.x⟩

Article dans une revue istex halsde-00373273v1

Anguilla marmorata larval migration plasticity as revealed by otolith microstructural analysis

Elodie Reveillac , Éric Feunteun , Patrick Berrebi , Pierre-Alexandre Gagnaire , Raymonde R. Lecomte-Finiger et al.

Canadian Journal of Fisheries and Aquatic Sciences, 2008, 65 (10), pp.2127-2137. ⟨10.1139/F08-122⟩

Article dans une revue halsde-00367277v1

New clues for freshwater eels (Anguilla spp.) migration routes to eastern Madagascar and surrounding islands

Tony Robinet , Elodie Réveillac , M. Kuroki , J. Aoyama , K. Tsukamoto et al.

Marine Biology, 2008, 154, pp.453-463. ⟨10.1007/s00227-008-0938-7⟩

Article dans une revue istex halsde-00284449v1

Co-occurence of two Alexandrium species in Thau Lagoon

Benjamin Genovesi , Estelle Masseret , M.S. Shin-Grzebyk , Daniel Grzebyk , Patrick Berrebi et al.

Harmful Agae News An IOC Newsletter on toxic algae and algal blooms, 2008, 37, pp.1-2

Article dans une revue halsde-00451663v1

RFLP and semi-multiplex PCR-based identification of four eel species from the south-western Indian Ocean region

Pierre-Alexandre Gagnaire , K. Tsukamoto , J. Aoyama , Y. Minegishi , P. Valade et al.

Journal of Fish Biology, 2007, 71 (Supplement B), pp.279-287. ⟨10.1111/j.1095-8649.2007.01605.x⟩

Article dans une revue istex halsde-00300254v1

Population genomics support PRDM9-dependent recombination landscapes in salmonids

Marie Raynaud , Pierre-Alexandre Gagnaire , Nicolas Galtier

3rd Joint Congress on Evolutionary Biology, Jul 2024, Montreal, Canada

Communication dans un congrès hal-04785772v1

Capturing the diversity of population recombination landscapes in fish and insects

Marie Raynaud , Pierre-Alexandre Gagnaire , Nicolas Galtier

RecomBern, Sep 2024, Bern (CH), Switzerland

Communication dans un congrès hal-04785738v1

Population genomics reveal PRDM9-dependent recombination landscapes in salmonids

Marie Raynaud , Pierre-Alexandre Gagnaire , Nicolas Galtier

GDR ALPHY / AIEM, Jan 2023, Grenoble, France

Communication dans un congrès hal-04785784v1

Integrating recombination information into population genomics: why and how?

Pierre-Alexandre Gagnaire

XIII International symposium on Littorinid Biology and Evolution, Jul 2023, Vila do Conde, Portugal

Communication dans un congrès hal-04780263v1

Using genome-wide ancestry pattern in European sea bass to assess phenotypic variation and ensure sustainable aquaculture

Maeva Leitwein , Ghislain Durif , Pierre-Alexandre Gagnaire , Alain Vergnet , Frédéric Clota et al.

6th Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain

Communication dans un congrès hal-04185352v1

Population-based recombination rates estimates to study genetic connectivity

Marie Raynaud , Pierre-Alexandre Gagnaire , Nicolas Galtier

International Conference on Marine Connectivity, Dec 2021, Paris, France

Communication dans un congrès hal-04785796v1

Genome wide association studies revealed one strong effect QTL for viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen et al.

Aquaculture Europe 2020, Apr 2021, Cork, Ireland

Communication dans un congrès hal-03198222v1

Genomically assisted reconstruction of the ancestral Dicentrarchus labrax L. Mediterranean lineage

Sara Faggion , Duranton Maud , Pierre-Alexandre Gagnaire , Marc Vandeputte , François Allal

Aquaculture Europe 2021, Oct 2021, Funchal, Portugal

Communication dans un congrès hal-03360557v1

Genomically assisted reconstruction of the ancestral Dicentrarchus labrax Mediterranean lineage

Sara Faggion , Maud Duranton , Pierre-Alexandre Gagnaire , Marc Vandeputte , François Allal

6th International Symposium Genomics in Aquaculture, Sep 2020, Granada, Spain

Communication dans un congrès hal-03187502v1

Des puces pour prédire l’avenir…

François Allal , Ronan Griot , Pierre-Alexandre Gagnaire , Romain Morvezen , Sophie Brard et al.

Journées du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2018, Montpelllier, France

Communication dans un congrès hal-03156824v1

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

Sara Faggion , Marc Vandeputte , Béatrice Chatain , Pierre-Alexandre Gagnaire , François Allal

AQUA 2018, Aug 2018, Montpellier, France

Communication dans un congrès hal-03187154v1

GENESEA : développement de la sélection génomique chez le bar et la daurade

François Allal , Ronan Griot , Pierre-Alexandre Gagnaire , Christophe Klopp , Aline Bajek et al.

Journées Techniques du Sysaaf, Dec 2017, Rennes, France

Communication dans un congrès hal-03156734v1

Adaptation-adaptabilité : comprendre la réponse adaptative avec pour objectif de la prédire

Nicolas Bierne , Malika Ainouche , M. Gouy , Pierre-Alexandre Gagnaire , Guillaume Mitta et al.

Prospectives de l’Institut Ecologie et environnement du CNRS : compte-rendu des journées des 22, 23 et 24 février 2017, CNRS, Bordeaux, CNRS, pp.127-141, 2017, Les Cahiers Prospectives CNRS INEE

Chapitre d'ouvrage hal-03132863v1
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Sex chromosomes and chromosomal rearrangements are key to behavioural sexual isolation in Jaera albifrons marine isopods

Ambre Ribardiere , Claire Daguin-Thiebaut , Jerome Coudret , Gildas Le Corguille , Komlan Avia et al.

2025

Pré-publication, Document de travail hal-04923366v1
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PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids

Marie Raynaud , Paola Sanna , Julien Joseph , Julie A. J. Clément , Yukiko Imai et al.

2024

Pré-publication, Document de travail hal-04516336v1
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Ecotype formation in the European anchovy fuelled by structural variants of different origins and genetic interactions with a southern lineage

Laura Meyer , Pierre Barry , Christine Arbiol , Rita Castilho , Carl van der Lingen et al.

2019

Pré-publication, Document de travail hal-04792625v1
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Divergence and gene flow history at two large chromosomal inversions involved in long-snouted seahorse ecotype formation

Laura Meyer , Pierre Barry , Florentine Riquet , Andrew Foote , Clio Der Sarkissian et al.

2023

Pré-publication, Document de travail hal-04306022v1
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Unidirectional trans-Atlantic gene flow and a mixed spawning area shape the genetic connectivity of Atlantic bluefin tuna

Natalia Diaz-Arce , Pierre-Alexandre Gagnaire , David E Richardson , John Walter , Sophie Arnaud-Haond et al.

2023

Pré-publication, Document de travail (preprint/prepublication) hal-04307746v1
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Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

Florentine Riquet , Cathy Liautard-Haag , Lucy Woodall , Carmen Bouza , Patrick Louisy et al.

2018

Pré-publication, Document de travail hal-01869948v1
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Candidate gene variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats

B Guinand , C Chauvel , M Lechene , J Tournois , Costas S Tsigenopoulos et al.

2016

Pré-publication, Document de travail hal-01370327v1