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Pierre-Alexandre Gagnaire

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Researcher identifiers
  • IdHAL pierre-alexandre-gagnaire
  • ResearcherId : S-2352-2019
  • IdRef : 137765401
  • ORCID 0000-0002-1908-3235
  • Google Scholar : https://scholar.google.com/citations?user=orGqHhAAAAAJ&hl=fr
  • ResearcherId : http://www.researcherid.com/rid/S-2352-2019

Presentation

**Pierre-Alexandre Gagnaire** Born 07/02/1982 CNRS Researcher UMR5554 – Montpellier Institute for Evolutionary Sciences, University of Montpellier, France **Research area** My research focuses on the evolutionary processes involved in adaptation and speciation, with a particular interest in the population genetic mechanisms underlying the build-up of reproductive isolation between divergent populations. Related interests concern the inference of the demographic history, the molecular evolution and the genetic architecture of phenotypic traits involved in local adaptation. My approaches are based on the analysis of population genomic data. **Previous positions** 2013 ––, CNRS “Chargé de Recherches”, ISEM UMR5554, Montpellier 2011 –13, Post-doc ANR fellow, ISEM UMR5554, Montpellier 2009 –11, Post-doc fellow, Louis Bernatchez Lab, IBIS, Laval University, Canada **Education** 2009, PhD, Population genetics, UMR5554, Montpellier (Superviser Dr. Patrick Berrebi) 2006, MSc, Molecular and Cellular Biology, Ecole Nomale Supérieure de Lyon **Co-supervision of PhD students** 2016–19, Maud Duranton \[co-superviser F. Bonhomme\] 2014–19, Clément Rougeux \[co-superviser L. Bernatchez\] 2015–18, Maeva Leitwein \[co-superviser P. Berrebi & B. Guinand\] 2014–16, Ahmed Soussi \[co-superviser F. Bonhomme & Lilia Bahri-Sfar\] **Teaching** 2011–, 2–5 hours per year at Master level, University of Montpellier 2007–09, 64 hours per year at Licence-Master level, University of Montpellier **Grants** 2018–21, ***CoGeDiv*** project, ANR JCJC (307 kE) 2013–14, ***ArchiGen*** project, CNRS-INEE (15 kE) 2011–14, ***Labrad-Seq*** project, ANR « retour de postdoc » (210 kE) 2009–10, Post-Doc Fellowship, Canada Foreign Affairs, Trade and Development (32 k$)

Publications

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Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study

Marie Raynaud , Pierre-Alexandre Gagnaire , Nicolas Galtier
Peer Community Journal, 2023, 3, pp.e27. ⟨10.1101/2022.03.30.486352⟩
Journal articles hal-03879740v1
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Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha

Jade Castel , Stéphane Hourdez , Florence Pradillon , Claire Daguin-Thiébaut , Marion Ballenghien
Genes, 2022, 13 (6), pp.985. ⟨10.3390/genes13060985⟩
Journal articles hal-03771381v1
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Age-specific survivorship and fecundity shape genetic diversity in marine fishes

Pierre Barry , Thomas Broquet , Pierre-Alexandre Gagnaire
Evolution Letters, 2022, 6 (1), pp.46-62. ⟨10.1002/evl3.265⟩
Journal articles hal-03443785v2
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Introgression between highly divergent sea squirt genomes: an adaptive breakthrough?

Christelle Fraïsse , Alan Le Moan , Camille Roux , Guillaume Dubois , Claire Daguin-Thiébaut
Peer Community Journal, 2022, 2, pp.e54. ⟨10.24072/pcjournal.172⟩
Journal articles hal-03817700v1
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Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep-sea hydrothermal gastropod Ifremeria nautilei

Adrien Tran Y. Lu , Stephanie Ruault , Claire Daguin-Thiébaut , Jade Castel , Nicolas Bierne
Molecular Ecology, 2022, 31 (10), pp.2796-2813. ⟨10.1111/mec.16430⟩
Journal articles hal-03669635v1
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Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish

Israel Guerrero-Cózar , Jessica Gomez-Garrido , Concha Berbel , Juan Martinez-Blanch , Tyler Alioto
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-92601-5⟩
Journal articles hal-03443762v1
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Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream

Carine Rey , Audrey M. Darnaude , Franck Ferraton , Bruno Guinand , François Bonhomme
Genes, 2020, 11 (4), pp.398. ⟨10.3390/genes11040398⟩
Journal articles hal-02887670v1
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Genetic characterization of cupped oyster resources in Europe using informative single nucleotide polymorphism (SNP) panels

Sylvie Lapègue , Serge Heurtebise , Florence Cornette , Erwan Guichoux , Pierre-Alexandre Gagnaire
Genes, 2020, 11 (4), pp.1-17. ⟨10.3390/genes11040451⟩
Journal articles hal-03065752v1

Speciation history of European (Anguilla anguilla) and American eel (A. rostrata), analysed using genomic data

Natacha Nikolic , Shenglin Liu , Magnus W Jacobsen , Bjarni Jónsson , Louis Bernatchez
Molecular Ecology, 2020, 29 (3), pp.565-577. ⟨10.1111/mec.15342⟩
Journal articles hal-03065758v1
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Comparative genomics approach to evolutionary process connectivity

Pierre-Alexandre Gagnaire
Evolutionary Applications, 2020, 13 (6), pp.1320-1334. ⟨10.1111/eva.12978⟩
Journal articles hal-03065737v1
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The contribution of ancient admixture to reproductive isolation between European sea bass lineages

Maud Duranton , François Allal , Sophie Valière , Olivier Bouchez , François Bonhomme
Evolution Letters, 2020, 4 (3), pp.226-242. ⟨10.1002/evl3.169⟩
Journal articles hal-03065745v1
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Spatial gradients of introgressed ancestry reveal cryptic connectivity patterns in a high gene flow marine fish

Tony Robinet , Valérie Roussel , Karine Cheze , Pierre-Alexandre Gagnaire
Molecular Ecology, 2020, ⟨10.1111/mec.15611⟩
Journal articles hal-02925509v1

Model‐based demographic inference of introgression history in European whitefish species pairs'

Clément Rougeux , Pierre-Alexandre Gagnaire , Louis Bernatchez
Journal of Evolutionary Biology, 2019, 32 (8), pp.806-817. ⟨10.1111/jeb.13482⟩
Journal articles hal-02395921v1
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The spatial scale of dispersal revealed by admixture tracts

Maud Duranton , François Bonhomme , Pierre-Alexandre Gagnaire
Evolutionary Applications, 2019, 12 (9), pp.1743-1756. ⟨10.1111/eva.12829⟩
Journal articles hal-02395949v1
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Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics

Keoni Saint-Pé , Maeva Leitwein , Laurence Tissot , Nicolas Poulet , Bruno Guinand
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-5958-9⟩
Journal articles hal-02395980v1
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Using Haplotype Information for Conservation Genomics

Maeva Leitwein , Maud Duranton , Quentin Rougemont , Pierre-Alexandre Gagnaire , Louis Bernatchez
Trends in Ecology and Evolution, 2019, ⟨10.1016/j.tree.2019.10.012⟩
Journal articles hal-02395119v1

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

Sara Faggion , Marc Vandeputte , Béatrice Chatain , Pierre-Alexandre Gagnaire , François Allal
Heredity, 2019, 122 (5), pp.612-621. ⟨10.1038/s41437-018-0157-z⟩
Journal articles hal-02395931v1

The role of recombination on genome‐wide patterns of local ancestry exemplified by supplemented brook charr populations

Maeva Leitwein , Hugo Cayuela , Anne‐laure Ferchaud , Eric Normandeau , Pierre-Alexandre Gagnaire
Molecular Ecology, 2019, 28 (21), pp.4755-4769. ⟨10.1111/mec.15256⟩
Journal articles hal-02395970v1

Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex

Clément Rougeux , Pierre-Alexandre Gagnaire , Kim Praebel , Ole Seehausen , Louis Bernatchez
Molecular Ecology, 2019, 28 (19), pp.4388-4403. ⟨10.1111/mec.15226⟩
Journal articles hal-02395961v1
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Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

Florentine Riquet , Cathy Liautard‐haag , Lucy Woodall , Carmen Bouza , Patrick Louisy
Evolution - International Journal of Organic Evolution, 2019, 73 (4), pp.817-835. ⟨10.1111/evo.13696⟩
Journal articles hal-02395914v1

The European sea bass: a key marine fish model in the wild and in aquaculture

Marc Vandeputte , P.-A. Gagnaire , F. Allal
Animal Genetics, 2019, 50 (3), pp.195-206. ⟨10.1111/age.12779⟩
Journal articles hal-02395941v1
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The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies

Christelle Fraïsse , Camille Roux , Pierre-Alexandre Gagnaire , Jonathan Romiguier , Nicolas Faivre
PeerJ, 2018, 6, ⟨10.7717/peerj.5198⟩
Journal articles hal-01882981v1
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The origin and remolding of genomic islands of differentiation in the European sea bass

Maud Duranton , François Allal , Christelle Fraïsse , Nicolas Bierne , François Bonhomme
Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-04963-6⟩
Journal articles hal-01825457v1

Genomic and geographic footprints of differential introgression between two divergent fish species (Solea spp.)

Ahmed Souissi , François Bonhomme , Manuel Manchado , Lilia Bahri-Sfar , Pierre-Alexandre Gagnaire
Heredity, 2018, 121 (6), pp.579-593. ⟨10.1038/s41437-018-0079-9⟩
Journal articles hal-02395886v1

Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts

Maeva Leitwein , Pierre-Alexandre Gagnaire , Erick Desmarais , Patrick Berrebi , Bruno Guinand
Molecular Ecology, 2018, 27 (17), pp.3466 - 3483. ⟨10.1111/mec.14816⟩
Journal articles hal-01922616v1
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Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata

Pierre-Alexandre Gagnaire , Jean-Baptiste Lamy , Florence Cornette , Serge Heurtebise , Lionel Degremont
Genome Biology and Evolution, 2018, 10 (9), pp.2518-2534. ⟨10.1093/gbe/evy194⟩
Journal articles hal-02395878v1
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RAD-Seq Reveals Patterns of Additive Polygenic Variation Caused by Spatially-Varying Selection in the American Eel (Anguilla rostrata)

Charles Babin , Pierre-Alexandre Gagnaire , Scott Pavey , Louis Bernatchez
Genome Biology and Evolution, 2017, 9 (11), pp.2974-2986. ⟨10.1093/gbe/evx226⟩
Journal articles hal-02395860v1
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A Dense Brown Trout ( Salmo trutta ) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity

Maeva Leitwein , Bruno Guinand , Juliette Pouzadoux , Erick Desmarais , Patrick Berrebi
G3, 2017, 7 (4), pp.1365 - 1376. ⟨10.1534/g3.116.038497⟩
Journal articles hal-01922619v1
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Introgressive hybridization and morphological transgression in the contact zone between two Mediterranean Solea species

Ahmed Souissi , Pierre-Alexandre Gagnaire , François Bonhomme , Lilia Bahri-Sfar
Ecology and Evolution, 2017, 7 (5), pp.1394-1402. ⟨10.1002/ece3.2533⟩
Journal articles hal-02395842v1
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Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

Clément Rougeux , Louis Bernatchez , Pierre-Alexandre Gagnaire
Genome Biology and Evolution, 2017, 9 (8), pp.2057-2074. ⟨10.1093/gbe/evx150⟩
Journal articles hal-02395854v1

Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes

Quentin Rougemont , Pierre-Alexandre Gagnaire , Charles Perrier , Clémence Genthon , Anne-Laure Besnard
Molecular Ecology, 2017, 26 (1), pp.142-162. ⟨10.1111/mec.13664⟩
Journal articles hal-01606314v1
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Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

Pierre-Alexandre Gagnaire , Oscar Gaggiotti
Current zoology, 2016, 62 (6), pp.603-616. ⟨10.1093/cz/zow088⟩
Journal articles hal-02395790v1
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Candidate gene variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats

B. Guinand , C. Chauvel , M. Lechene , J. Tournois , C.S. Tsigenopoulos
Marine Ecology Progress Series, 2016, 558, pp.115-127. ⟨10.3354/meps11851⟩
Journal articles hal-03046445v1

Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy explained by differential introgression after secondary contact

A. Le Moan , P.-A. Gagnaire , F. Bonhomme
Molecular Ecology, 2016, 25 (13), pp.3187-3202. ⟨10.1111/mec.13627⟩
Journal articles hal-02395752v1
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Population genomic footprints of fine-scale differentiation between habitats in Mediterranean blue tits

M. Szulkin , P.-A. Gagnaire , N. Bierne , A. Charmantier
Molecular Ecology, 2016, 25 (2), pp.542-558. ⟨10.1111/mec.13486⟩
Journal articles hal-02326694v1

Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations

M. Leitwein , P. Gagnaire , E. Desmarais , S. Guendouz , Marine Rohmer
Journal of Fish Biology, 2016, 89 (6), pp.2717 - 2734. ⟨10.1111/jfb.13131⟩
Journal articles hal-01922655v1
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Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

Pierre-Alexandre Gagnaire , Thomas Broquet , D. Aurelle , Frédérique Viard , Ahmed Souissi
Evolutionary Applications, 2015, 8 (8), pp.769-786. ⟨10.1111/eva.12288⟩
Journal articles hal-01187735v1
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RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish ( Coregonus clupeaformis ) Species Pairs

Martin Laporte , Sean Rogers , Anne-Marie Dion-Côté , Eric Normandeau , Pierre-Alexandre Gagnaire
G3, 2015, 5 (7), pp.1481-1491. ⟨10.1534/g3.115.019067⟩
Journal articles hal-02395342v1

Biodiversity and distribution of leptocephali west of the Mascarene Plateau in the southwestern Indian Ocean

Michael J. Miller , Eric Feunteun , Jun Aoyama , Shun Watanabe , Mari Kuroki
Progress in Oceanography, 2015, 137, pp.84-102. ⟨10.1016/j.pocean.2015.05.026⟩
Journal articles hal-01192848v1
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European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

Mbaye Tine , Heiner Kuhl , Pierre-Alexandre Gagnaire , Bruno Louro , Erick Desmarais
Nature Communications, 2014, 5 (1), ⟨10.1038/ncomms6770⟩
Journal articles hal-01922671v1
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Do North Atlantic eels show parallel patterns of spatially varying selection?

Malene G Ulrik , José Martín Pujolar , Anne-Laure Ferchaud , Magnus W Jacobsen , Thomas D Als
BMC Evolutionary Biology, 2014, 14 (1), pp.138. ⟨10.1186/1471-2148-14-138⟩
Journal articles hal-02395323v1
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The geography of introgression in a patchy environment and the thorn in the side of ecological speciation

Nicolas Bierne , Pierre-Alexandre Gagnaire , Patrice David
Current zoology, 2013, 59 (1), pp.72 - 86. ⟨10.1093/czoolo/59.1.72⟩
Journal articles hal-02395293v1

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

Pierre-Alexandre Gagnaire , Scott Pavey , Eric Normandeau , Louis Bernatchez
Evolution - International Journal of Organic Evolution, 2013, 67 (9), pp.2483-2497. ⟨10.1111/evo.12075⟩
Journal articles hal-02395314v1

Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish ( Coregonus clupeaformis ) species pairs as revealed by next-generation sequencing

Scott Pavey , Maelle Sevellec , William Adam , Eric Normandeau , Fabien Lamaze
Molecular Ecology, 2013, 22 (14), pp.3833-3849. ⟨10.1111/mec.12358⟩
Journal articles hal-02395312v1

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)

Pierre-Alexandre Gagnaire , Eric Normandeau , Scott Pavey , Louis Bernatchez
Molecular Ecology, 2013, 22 (11), pp.3036-3048. ⟨10.1111/mec.12127⟩
Journal articles hal-02395307v1

Population genetics of the American eel ( Anguilla rostrata ): F ST = 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species

Caroline Côté , Pierre-Alexandre Gagnaire , Vincent Bourret , Guy Verreault , Martin Castonguay
Molecular Ecology, 2013, 22 (7), pp.1763-1776. ⟨10.1111/mec.12142⟩
Journal articles hal-02395299v1

Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor

Yuki Minegishi , Pierre-Alexandre Gagnaire , Jun Aoyama , Pierre Bosc , Eric Feunteun
Journal of Biogeography, 2012, 39 (2), pp.408-420. ⟨10.1111/j.1365-2699.2011.02603.x⟩
Journal articles hal-02395267v1

The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel ( Anguilla rostrata )

Pierre-Alexandre Gagnaire , Eric Normandeau , Caroline Côté , Michael Møller Hansen , Louis Bernatchez
Genetics, 2012, 190 (2), pp.725-736. ⟨10.1534/genetics.111.134825⟩
Journal articles hal-02395275v1
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RNA/DNA ratios in American glass eels ( Anguilla rostrata ): evidence for latitudinal variation in physiological status and constraints to oceanic migration?

Simon Laflamme , Caroline Côté , Pierre-Alexandre Gagnaire , Martin Castonguay , Louis Bernatchez
Ecology and Evolution, 2012, 2 (5), pp.875-884. ⟨10.1002/ece3.212⟩
Journal articles hal-02395286v1

Comparative Genomics Reveals Adaptive Protein Evolution and a Possible Cytonuclear Incompatibility between European and American Eels

Pierre-Alexandre Gagnaire , Eric Normandeau , Louis Bernatchez
Molecular Biology and Evolution, 2012, 29 (10), pp.2909-2919. ⟨10.1093/molbev/mss076⟩
Journal articles hal-02395279v1

Microsatellite length variation in candidate genes correlates with habitat in the gilthead sea bream Sparus aurata

Lamya Chaoui , Pierre-Alexandre Gagnaire , Bruno Guinand , Jean-Pierre Quignard , Costas Tsigenopoulos
Molecular Ecology, 2012, 21 (22), pp.5497 - 5511. ⟨10.1111/mec.12062⟩
Journal articles hal-01922723v1

WITHIN-POPULATION STRUCTURE HIGHLIGHTED BY DIFFERENTIAL INTROGRESSION ACROSS SEMIPERMEABLE BARRIERS TO GENE FLOW IN ANGUILLA MARMORATA

Pierre-Alexandre Gagnaire , Yuki Minegishi , Saliha Zenboudji , Pierre Valade , Jun Aoyama
Evolution - International Journal of Organic Evolution, 2011, 65 (12), pp.3413-3427. ⟨10.1111/j.1558-5646.2011.01404.x⟩
Journal articles hal-02395262v1
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ASSESSMENT OF CRYPTIC SPECIES DIVERSITY WITHIN BLOOMS AND CYST BANK OF THE ALEXANDRIUM TAMARENSE COMPLEX (DINOPHYCEAE) IN A MEDITERRANEAN LAGOON FACILITATED BY SEMI-MULTIPLEX PCR

Benjamin Genovesi , Mi-Sun Shin-Grzebyk , Daniel Grzebyk , Mohamed Laabir , Pierre-Alexandre Gagnaire
Journal of Plankton Research, 2010, ⟨10.1093/plankt/FBQ127⟩
Journal articles hal-00632294v1

Multiplex PCR assay to discriminate four neighbouring species of the Calliptamus genus (Orthoptera: Acrididae) from France

E. Blanchet , L. Blondin , Pierre-Alexandre Gagnaire , A. Foucart , J.M. Vassal
Bulletin of Entomological Research, 2010, 100 (6), pp.701-706. ⟨10.1017/S0007485310000052⟩
Journal articles hal-02395257v1

Development of a key using morphological characters to distinguish south-western Indian Ocean anguillid glass eels

Elodie Reveillac , Pierre-Alexandre Gagnaire , Raymonde R. Lecomte-Finiger , Patrick Berrebi , Tony Robinet
Journal of Fish Biology, 2009, 74 (9), pp.2171-2177. ⟨10.1111/j.1095-8649.2009.02284.x⟩
Journal articles halsde-00420526v1

Ocean currents drive secondary contact between Anguilla marmorata populations in the Indian Ocean

Pierre-Alexandre Gagnaire , Y. Minegishi , J. Aoyama , Elodie Reveillac , Tony Robinet
Marine Ecology Progress Series, 2009, 379, pp.267-278. ⟨10.3354/meps07895⟩
Journal articles halsde-00372244v1

Natural selection influences AFLP intraspecific genetic variability and introgression patterns in Atlantic eels

Pierre-Alexandre Gagnaire , V. Albert , B. Jónsson , Louis Bernatchez
Molecular Ecology, 2009, 18 (8), pp.1678 - 1691. ⟨10.1111/j.1365-294X.2009.04142.x⟩
Journal articles halsde-00373273v1

Anguilla marmorata larval migration plasticity as revealed by otolith microstructural analysis

Elodie Reveillac , Eric Feunteun , Patrick Berrebi , Pierre-Alexandre Gagnaire , Raymonde R. Lecomte-Finiger
Canadian Journal of Fisheries and Aquatic Sciences, 2008, 65 (10), pp.2127-2137. ⟨10.1139/F08-122⟩
Journal articles halsde-00367277v1

New clues for freshwater eels (Anguilla spp.) migration routes to eastern Madagascar and surrounding islands

Tony Robinet , Elodie Réveillac , M. Kuroki , J. Aoyama , K. Tsukamoto
Marine Biology, 2008, 154, pp.453-463. ⟨10.1007/s00227-008-0938-7⟩
Journal articles halsde-00284449v1

Co-occurence of two Alexandrium species in Thau Lagoon

Benjamin Genovesi , Estelle Masseret , M.S. Shin-Grzebyk , Daniel Grzebyk , Patrick Berrebi
Harmful Agae News An IOC Newsletter on toxic algae and algal blooms, 2008, 37, pp.1-2
Journal articles halsde-00451663v1

RFLP and semi-multiplex PCR-based identification of four eel species from the south-western Indian Ocean region

Pierre-Alexandre Gagnaire , K. Tsukamoto , J. Aoyama , Y. Minegishi , P. Valade
Journal of Fish Biology, 2007, 71 (Supplement B), pp.279-287. ⟨10.1111/j.1095-8649.2007.01605.x⟩
Journal articles halsde-00300254v1

Using genome-wide ancestry pattern in European sea bass to assess phenotypic variation and ensure sustainable aquaculture

Maeva Leitwein , Ghislain Durif , Pierre-Alexandre Gagnaire , Alain Vergnet , Frédéric Clota
6th Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain
Conference papers hal-04185352v1

Genomically assisted reconstruction of the ancestral Dicentrarchus labrax L. Mediterranean lineage

Sara Faggion , Duranton Maud , Pierre-Alexandre Gagnaire , Marc Vandeputte , François Allal
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal
Conference papers hal-03360557v1

Genome wide association studies revealed one strong effect QTLfor viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Aquaculture Europe 2020, Apr 2021, Cork, Ireland
Conference papers hal-03198222v1

Genomically assisted reconstruction of the ancestral Dicentrarchus labrax Mediterranean lineage

Sara Faggion , Maud Duranton , Pierre-Alexandre Gagnaire , Marc Vandeputte , François Allal
6th International Symposium Genomics in Aquaculture, Sep 2020, Granada, Spain
Conference papers hal-03187502v1

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

Sara Faggion , Marc Vandeputte , Béatrice Chatain , Pierre-Alexandre Gagnaire , François Allal
AQUA 2018, Aug 2018, Montpellier, France
Conference papers hal-03187154v1

Des puces pour prédire l’avenir…

François Allal , Ronan Griot , Pierre-Alexandre Gagnaire , Romain Morvezen , Sophie Brard
Journées du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2018, Montpelllier, France
Conference papers hal-03156824v1

GENESEA : développement de la sélection génomique chez le bar et la daurade

François Allal , Ronan Griot , Pierre-Alexandre Gagnaire , Christophe C. Klopp , Aline Bajek
Journées Techniques du Sysaaf, Dec 2017, Rennes, France
Conference papers hal-03156734v1

Adaptation-adaptabilité : comprendre la réponse adaptative avec pour objectif de la prédire

Nicolas Bierne , Malika Ainouche , M. Gouy , Pierre-Alexandre Gagnaire , Guillaume Mitta
Prospectives de l’Institut Ecologie et environnement du CNRS : compte-rendu des journées des 22, 23 et 24 février 2017, CNRS, Bordeaux, CNRS, pp.127-141, 2017, Les Cahiers Prospectives CNRS INEE
Book sections hal-03132863v1