
Rafael Muñoz-Tamayo
- Modélisation Systémique Appliquée aux Ruminants (MoSAR)
Présentation
I am a mathematical modeller of biological systems. I am from Colombia. I have an undergraduate in chemical engineering and a MSc automatic control degree from Universidad Nacional de Colombia. I did my PhD in applied mathematics at Université Paris-Sud (France).
I am a researcher at INRAE (France) in the MoSAR team since 2014. My research motivation is to develop a quantitative understanding of biological processes using modelling to combine and structure information across disciplines. My research project aims to enhance understanding of the dynamic interplay between the diet, the rumen microbiota and the ruminant animal via an interdisciplinary approach covering microbiology, chemistry, thermodynamics, animal nutrition, computational biology and mathematical modelling. My ultimate goal is to produce innovative model-based solutions to major challenges facing agriculture such as efficient ruminant production. I have an international path with significant experience in being the fulcrum in interdisciplinary projects within a network of more than 60 international scientists and 41 publications. I am strongly engaged in the open science movement with leading roles at institutional and international levels for enhancing open science practices and thus contributing to make open science the new normal. I am founder of the Open Science initiative Peer Community In ( PCI) Animal Science. For more information about my research please visit my web site.
Domaines de recherche
Compétences
Publications
Publications
Exploring modelling approaches to address the dynamic nature of animal health75. Annual meeting of the european federation of animal science (EAAP), EAAP, Sep 2024, Florence, Italy. pp.805
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hal-04777992
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Using risk analysis to compare the accuracy of enteric methane emissions models of dairy cattle75. Annual Meeting of the European Federation of Animal Science, EAAP, Jan 2024, Florence, Italy. pp.329
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hal-04750397
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Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on methane production in a rumen in vitro continuous system75. Annual Meeting of the European Federation of Animal Science, EAAP, Jan 2024, Florence, Italy. pp.329
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hal-04750366
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Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?International Symposium on Energy and Protein Metabolism and Nutrition (ISEP 2022), EAAP, Sep 2022, Granada, Spain. pp.100830
Communication dans un congrès
hal-04174207
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A dynamic in silico model of rumen microbial fermentation and methane productionBook of Abstracts of the 74. Annual Meeting of the European Federation of Animal Science, INRAE, Aug 2023, Lyon, France. pp.325
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hal-04199208
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A dynamic mechanistic model of microbial fermentation and methane production in the cow rumenADSA Annual Meeting, ADSA, Jun 2023, Ottawa, Canada
Communication dans un congrès
hal-04181482
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Peer Community In Animal Science: A free publication model for transparent and open science2022 ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma City, United States. pp.80-81, ⟨10.1093/jas/skac247.158⟩
Communication dans un congrès
hal-04138498
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The power of theoretical and practical identifiability analysis for modeling (micro-) biological processesASAS-CSAS Annual Meeting, Jun 2022, Oklahoma, United States. pp.33
Communication dans un congrès
hal-03748944
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Towards the characterisation of animal robustness by dynamic energy allocation indicators in fattening pigsWCGALP 2022, Jul 2022, Rotterdam, Netherlands
Communication dans un congrès
hal-03725117
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Genome-scale network reconstruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S852021 - 12th International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France
Communication dans un congrès
hal-03402155
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The shades of gray in model building and its opportunities for precision livestock farming72. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland
Communication dans un congrès
hal-03347173
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Genome-scale network recostruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S8512th International Symposium on Gut Microbiology, Oct 2021, Virtual conference, France
Communication dans un congrès
hal-04843685
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Combining a process-based model of rumen fermentation with methane production data from respiration chambers75. Annual Conference of the British Society of Animal Science (BSAS), Apr 2019, Edinburgh, United Kingdom. ⟨10.1017/S2040470019000013⟩
Communication dans un congrès
hal-02193900
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How complex does a mathematical model need to be to describe the dynamics of methane production in cattle?MODNUT, 2019
Communication dans un congrès
hal-02790648
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Predictive capabilities of a dynamic mechanistic model of in vitro fermentation by rumen microbiota61. Annual Meeting of the European Associationfor Animal Production (EAAP), 2019, NA, France
Communication dans un congrès
hal-02193905
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Assessing the predictive capabilities of a dynamic mechanistic model of in vitro rumen fermentation and methane production9. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT), Sep 2019, Ubatuba, Brazil. pp.320, ⟨10.1017/S2040470019000025⟩
Communication dans un congrès
hal-04485501
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Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approachJournées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Communication dans un congrès
hal-01840967
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Multivariate and network analysis identified microbial biomarkers linked to methane emission69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia
Communication dans un congrès
hal-02881487
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Tous les modèles doivent-ils être identifiables ?Journées Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. pp.1
Communication dans un congrès
hal-01840968
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Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approachJournées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Communication dans un congrès
hal-01840971
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Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approachGut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom
Communication dans un congrès
hal-02738326
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A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvationBioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France
Communication dans un congrès
hal-01601441
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Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvationMetabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal
Communication dans un congrès
hal-01603450
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Model-based optimization of lipid production by the oleaginous yeast Yarrowia lipolytica10. European Symposium on Biochemical Engineering Sciences, Sep 2014, Lille, France
Communication dans un congrès
hal-05004228
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Optimization of lipid production by oleaginous yeast in continuous culture19. World Congress of the International Federation of Automatic Control, Aug 2014, Cape Town, South Africa
Communication dans un congrès
hal-01268860
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A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgaeCAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India
Communication dans un congrès
hal-00856042
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Design of Optimal Experiments for Parameter Estimation of Microalgae Growth ModelsInternational Symposium on Computer Applications to Biotechnology (CAB 2013), Dec 2013, Mumbai, India
Communication dans un congrès
hal-00856749
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A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle.Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
Communication dans un congrès
hal-01601779
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Adaptive control for optimizing microalgae productionComputer Application in Biotechnology (CAB2013), Dec 2013, Mumbai, India
Communication dans un congrès
hal-00921486
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Driving microalgal production in raceway systems to near optimal productivities.European Control Conference (ECC13), Jul 2013, Zurich, Switzerland
Communication dans un congrès
hal-00852259
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Driving Species Competition in a Light-limited Chemostat9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Sep 2013, Toulouse, France
Communication dans un congrès
hal-00852258
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A closed-loop controller for optimizing nitrogen removal in a microalgal outdoor pond11. IWA Conference on Instrumentation Control and Automation, Sep 2013, Narbonne, France
Communication dans un congrès
hal-02747879
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IDEAS: a parameter identification toolbox with symbolic analysis of uncertainty and its application to biological modelling15. IFAC Symposium on System Identication (SYSID 2009), Jul 2009, Saint Malo, France. ⟨10.3182/20090706-3-FR-2004.00211⟩
Communication dans un congrès
hal-01204242
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Modelling and identification of in vitro homoacetogenesis by human-colon bacteria16. Mediterranean Conference on Control and Automation, 2008, Ajaccio, France
Communication dans un congrès
hal-01204248
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Human colon: a complex bioreactor. Conceptual modelling for the anaerobic digestion of the functional trophic chain11. World Congress on Anaerobic Digestion, Sep 2007, Brisbane, Australia. 6 p
Communication dans un congrès
hal-01204246
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Control of a bioreactor using feedback linearization2007 Mediterranean Conference on Control & Automation (MED 2007), Jun 2007, Athènes, Greece. ⟨10.1109/MED.2007.4433763⟩
Communication dans un congrès
hal-02755197
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Breve elogio a la lentitud en cienciaCiencia y Humanismo 50 años Revista Aleph (1996-2016), Carlos Enrique Ruiz, 594 p., 2016, 978-958-8730-75-2
Chapitre d'ouvrage
hal-02797416
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IDEAS2009
Autre publication scientifique
hal-01204255
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Modélisation mathématique de la dégradation des hydrates de carbone dans le côlon humainMathématiques [math]. Université Paris Sud - Paris 11, 2010. Français. ⟨NNT : ⟩
Thèse
tel-02822888
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A modelling odyssey in the tree of lifeModeling and Simulation. Université Paris Sud (Paris 11), 2019
HDR
tel-02183063
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