Rafael Muñoz-Tamayo
76
Documents
Presentation
I am a mathematical modeller of biological systems. I am from Colombia. I have an undergraduate in chemical engineering and a MSc automatic control degree from Universidad Nacional de Colombia. I did my PhD in applied mathematics at Inra (FR) on modelling fermentation by human gut microbiota. Further, I participated in various research projects in the domains of biotechnology, agriculture and life sciences at Inra, Wageningen University (NL) and Inria (FR). My research motivation is to develop a quantitative understanding of complex biological processes using modelling to combine and structure knowledge across disciplines. In 2014, I was appointed as researcher at the [MoSAR team](http://www6.jouy.inra.fr/mosar_eng/) (Inra). My current research project aims to enhance understanding of the dynamic interplay between the diet, the rumen microbiota and the ruminant animal via and interdisciplinary approach covering microbiology, chemistry, thermodynamics, animal science and mathematical modelling. For more information about my research please visit [my web site](https://sites.google.com/site/rafaelmunoztamayo/).
Publications
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The power of theoretical and practical identifiability analysis for modeling (micro-) biological processesASAS-CSAS Annual Meeting, Jun 2022, Oklahoma, United States. pp.33
Conference papers
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Towards the characterisation of animal robustness by dynamic energy allocation indicators in fattening pigsWCGALP 2022, Jul 2022, Rotterdam, Netherlands
Conference papers
hal-03725117v1
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Genome-scale network reconstruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S852021 - 12th International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France
Conference papers
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The shades of gray in model building and its opportunities for precision livestock farming72. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland
Conference papers
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Predictive capabilities of a dynamic mechanistic model of in vitro fermentation by rumen microbiota61. Annual Meeting of the European Associationfor Animal Production (EAAP), 2019, NA, France
Conference papers
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How complex does a mathematical model need to be to describe the dynamics of methane production in cattle?MODNUT, 2019
Conference papers
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Combining a process-based model of rumen fermentation with methane production data from respiration chambers75. Annual Conference of the British Society of Animal Science (BSAS), Apr 2019, Edinburgh, United Kingdom. ⟨10.1017/S2040470019000013⟩
Conference papers
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Tous les modèles doivent-ils être identifiables ?Journées Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. pp.1
Conference papers
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Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approachJournées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Conference papers
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Multivariate and network analysis identified microbial biomarkers linked to methane emission69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia
Conference papers
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Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approachJournées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Conference papers
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Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approachGut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom
Conference papers
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A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvationBioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France
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Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvationMetabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal
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Optimization of lipid production by oleaginous yeast in continuous culture19. World Congress of the International Federation of Automatic Control, Aug 2014, Cape Town, South Africa
Conference papers
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A closed-loop controller for optimizing nitrogen removal in a microalgal outdoor pond11. IWA Conference on Instrumentation Control and Automation, Sep 2013, Narbonne, France
Conference papers
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Design of Optimal Experiments for Parameter Estimation of Microalgae Growth ModelsInternational Symposium on Computer Applications to Biotechnology (CAB 2013), Dec 2013, Mumbai, India
Conference papers
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Driving Species Competition in a Light-limited Chemostat9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Sep 2013, Toulouse, France
Conference papers
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Driving microalgal production in raceway systems to near optimal productivities.European Control Conference (ECC13), Jul 2013, Zurich, Switzerland
Conference papers
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A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgaeCAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India
Conference papers
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A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle.Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
Conference papers
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Adaptive control for optimizing microalgae productionComputer Application in Biotechnology (CAB2013), Dec 2013, Mumbai, India
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IDEAS: a parameter identification toolbox with symbolic analysis of uncertainty and its application to biological modelling15. IFAC Symposium on System Identication (SYSID 2009), Jul 2009, Saint Malo, France. ⟨10.3182/20090706-3-FR-2004.00211⟩
Conference papers
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Modelling and identification of in vitro homoacetogenesis by human-colon bacteria16. Mediterranean Conference on Control and Automation, 2008, Ajaccio, France
Conference papers
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Control of a bioreactor using feedback linearization2007 Mediterranean Conference on Control & Automation (MED 2007), Jun 2007, Athènes, Greece. ⟨10.1109/MED.2007.4433763⟩
Conference papers
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Human colon: a complex bioreactor. Conceptual modelling for the anaerobic digestion of the functional trophic chain11. World Congress on Anaerobic Digestion, Sep 2007, Brisbane, Australia. 6 p
Conference papers
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Peer Community In Animal Science: A free publication model for transparent and open science10. Workshop on modelling nutrient digestion and utilization in farm animals (Modnut), Sep 2022, Alghero, Italy. Animal - science proceedings, 13 (4), pp.603, 2022, Proceedings of the 10th Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT). ⟨10.1016/j.anscip.2022.07.470⟩
Conference poster
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Animal modelling meets identifiability: a practioner perspectiveJournées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. , 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés
Conference poster
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Rumen methanogens exhibit specific energetic and growth dynamics: a modelling approach10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France. Cambridge University Press, Advances in Animal Biosciences, 9 (3), 2018, 10th. International Symposium on the Nutrition of Herbivores (ISNH10)
Conference poster
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Predicting ruminal pH dynamics by linking microbial metabolism and the host: a theoretical study10. INRA-Rowett symposium on gut microbiology “Twenty years and counting”, Jun 2016, Clermont-Ferrand, France. 2016
Conference poster
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Breve elogio a la lentitud en cienciaCiencia y Humanismo 50 años Revista Aleph (1996-2016), Carlos Enrique Ruiz, 594 p., 2016, 978-958-8730-75-2
Book sections
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IDEAS2009
Other publications
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Modélisation mathématique de la dégradation des hydrates de carbone dans le côlon humainMathématiques [math]. Université Paris Sud - Paris 11, 2010. Français. ⟨NNT : ⟩
Theses
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A modelling odyssey in the tree of lifeModeling and Simulation. Université Paris Sud (Paris 11), 2019
Habilitation à diriger des recherches
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