Rafael Muñoz-Tamayo

Research Director at the MoSAR team (INRAE)
82 %
Libre accès
100
Documents
Affiliation actuelle
  • Modélisation Systémique Appliquée aux Ruminants (MoSAR)
Contact

Présentation

I am a mathematical modeller of biological systems. I am from Colombia. I have an undergraduate in chemical engineering and a MSc automatic control degree from Universidad Nacional de Colombia. I did my PhD in applied mathematics at Université Paris-Sud (France).

I am a researcher at INRAE (France) in the MoSAR team since 2014. My research motivation is to develop a quantitative understanding of biological processes using modelling to combine and structure information across disciplines. My research project aims to enhance understanding of the dynamic interplay between the diet, the rumen microbiota and the ruminant animal via an interdisciplinary approach covering microbiology, chemistry, thermodynamics, animal nutrition, computational biology and mathematical modelling. My ultimate goal is to produce innovative model-based solutions to major challenges facing agriculture such as efficient ruminant production. I have an international path with significant experience in being the fulcrum in interdisciplinary projects within a network of more than 60 international scientists and 41 publications. I am strongly engaged in the open science movement with leading roles at institutional and international levels for enhancing open science practices and thus contributing to make open science the new normal. I am founder of the Open Science initiative Peer Community In ( PCI) Animal Science. For more information about my research please visit my web site.

Domaines de recherche

Modélisation et simulation

Compétences

modelling microbial ecosystems dynamic systems Open Science

Publications

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Publications

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Réduction des émissions de méthane entérique chez les ruminants : enjeux, solutions et perspectives à l’échelle de l’animal et des systèmes d’élevage

Florence Gondret , Donato Andueza , Mohamed Habibou Assouma , Valérie Berthelot , Didier Boichard et al.

INRAE Productions Animales, 2026, 39 (1), pp.9470. ⟨10.20870/productions-animales.2026.39.1.9470⟩

Article dans une revue hal-05526674v1
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Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on rumen fermentation and methane production under in vitro continuous conditions

Paul Blondiaux , Tristan Senga Kiessé , Maguy Eugène , Rafael Muñoz-Tamayo

Peer Community In Animal Science, 2025, 5, pp.e126. ⟨10.19189/001c.143644⟩

Article dans une revue hal-05363255v1
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Desarrollo de un modelo dinámico mecanicista para predecir el crecimiento de cuyes (Cavia porcellus) machos del genotipo Perúcir el crecimiento de cuyes (Cavia porcellus) machos del genotipo Perú

William Armando Tapie , Sandra Lucía Posada-Ochoa , Jaime Ricardo Rosero-Noguera , Rafael Muñoz-Tamayo

Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 2024, 48, pp.859 - 870. ⟨10.18257/raccefyn.2997⟩

Article dans une revue hal-04912246v1
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Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling

Mohsen Davoudkhani , Francesco Rubino , Christopher J Creevey , Seppo Ahvenjärvi , Ali R Bayat et al.

PLoS ONE, 2024, 19 (3), pp.e0298930. ⟨10.1371/journal.pone.0298930⟩

Article dans une revue hal-04558514v1
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Disentangling the dynamics of energy allocation to provide a proxy of robustness in fattening pigs

Guillaume Lenoir , Loïc Flatres-Grall , Rafael Muñoz-Tamayo , Ingrid David , Nicolas C Friggens

Genetics Selection Evolution, 2023, 55 (1), pp.77. ⟨10.1186/s12711-023-00851-w⟩

Article dans une revue hal-03871410v2
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Review: Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

D.P. Morgavi , Gonzalo Cantalapiedra-Hijar , Maguy Eugène , Cécile Martin , Pierre Noziere et al.

Animal, 2023, 17, pp.100830. ⟨10.1016/j.animal.2023.100830⟩

Article dans une revue (article de synthèse) hal-04174171v1
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Review: Towards the next-generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies

R. Muñoz-Tamayo , M. Davoudkhani , I. Fakih , C.E. Robles-Rodriguez , F. Rubino et al.

Animal, 2023, 17 (Suppl. 5), pp.100984. ⟨10.1016/j.animal.2023.100984⟩

Article dans une revue hal-04255485v1
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ASAS-NANP symposium: Mathematical Modeling in Animal Nutrition: The power of identifiability analysis for dynamic modeling in animal science:a practitioner approach

Rafael Muñoz-Tamayo , Luis O Tedeschi

Journal of Animal Science, 2023, 101, pp.1-13. ⟨10.1093/jas/skad320⟩

Article dans une revue hal-04302072v1
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Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium <i>Fibrobacter succinogenes</i> S85

Ibrahim Fakih , Jeanne Got , Carlos Eduardo Robles-Rodriguez , Anne Siegel , Evelyne Forano et al.

mSystems, 2023, 8 (3), pp.1-23. ⟨10.1128/msystems.01027-22⟩

Article dans une revue hal-04131368v1
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Animal board invited review: Quantification of resilience in farm animals

M. Taghipoor , M. Pastell , Olivier Martin , Hieu Nguyen-Ba , Jaap J. van Milgen et al.

Animal, 2023, 17 (9), pp.100925. ⟨10.1016/j.animal.2023.100925⟩

Article dans une revue (article de synthèse) hal-04214047v1
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Seven steps to enhance Open Science practices in animal science

Rafael Muñoz-Tamayo , Birte L Nielsen , Mohammed Gagaoua , Florence Gondret , E Tobias Krause et al.

PNAS Nexus, 2022, 1 (3), pp.1-6. ⟨10.1093/pnasnexus/pgac106⟩

Article dans une revue hal-03749515v1
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Dynamic data of body weight and feed intake in fattening pigs, and the determination of energetic allocation factors using a dynamic linear model

Guillaume Lenoir , K. Kashefifard , C. Chesnet , Loïc Flatres-Grall , Rafael Munoz Tamayo

Animal - Open Space, 2022, 1 (1), ⟨10.1016/j.anopes.2022.100014⟩

Article dans une revue hal-03747370v1
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Rumen microbial genomics: from cells to genes (and back to cells)

Milka Popova , Ibrahim Fakih , Evelyne Forano , Anne Siegel , Rafael Muñoz-Tamayo et al.

CAB Reviews Perspectives in Agriculture Veterinary Science Nutrition and Natural Resources, 2022, 2022, ⟨10.1079/cabireviews202217025⟩

Article dans une revue (article de synthèse) hal-03929845v1
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Quantifying growth perturbations over the fattening period in swine via mathematical modelling

Manuel Revilla , Guillaume Lenoir , Flatres-Grall Loïc , Rafael Munoz Tamayo , Nicolas C Friggens

Peer Community Journal, 2022, 2, pp.e9. ⟨10.24072/pcjournal.82⟩

Article dans une revue hal-03545140v1
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Predicting the dynamics of enteric methane emissions based on intake kinetic patterns in dairy cows fed diets containing either wheat or corn

Rafael Munoz Tamayo , B. Ruiz , Pierre Blavy , Sylvie Giger-Reverdin , Daniel Sauvant et al.

Animal - Open Space, 2022, 1 (1), pp.100003. ⟨10.1016/j.anopes.2021.100003⟩

Article dans une revue hal-03561639v1
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Dynamic data for determining the accuracy of four open-circuit respiration chambers designed to quantify methane emissions from goats

Ophelie Dhumez , Joseph-Alexandre J.-A. Tessier , Maguy Eugène , A.I. Martín-García , Alexandra Eymard et al.

Animal - Open Space, 2022, 1 (1), pp.100006. ⟨10.1016/j.anopes.2022.100006⟩

Article dans une revue hal-03594433v1
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Modelling the impact of the macroalgae <i>Asparagopsis taxiformis</i> on rumen microbial fermentation and methane production

Rafael Munoz Tamayo , Juana C Chagas , Mohammad Ramin , Sophie J Krizsan

Peer Community Journal, 2021, 1, pp.e7. ⟨10.24072/pcjournal.11⟩

Article dans une revue hal-03545126v1
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A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle

Rafael Munoz Tamayo , J. Ramírez Agudelo , R. Dewhurst , G. Miller , T. Vernon et al.

Animal, 2019, 13 (06), pp.1180-1187. ⟨10.1017/S1751731118002550⟩

Article dans une revue hal-02369429v1
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Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach

Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier , Fany Blanc et al.

Animal, 2019, First view (11), pp.1-11. ⟨10.1017/S1751731119000843⟩

Article dans une revue hal-02192515v1
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Hydrogenotrophic methanogens of the mammalian gut: Functionally similar, thermodynamically different—A modelling approach

Rafael Munoz Tamayo , Milka Popova , Maxence Tillier , Diego Morgavi , Jean-Pierre Morel et al.

PLoS ONE, 2019, 14 (12), pp.e0226243. ⟨10.1371/journal.pone.0226243⟩

Article dans une revue hal-02473686v1
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On parameter interpretability of phenomenological-based semiphysical models in biology

Laura Lema-Perez , Rafael Munoz Tamayo , Jose Garcia-Tirado , Hernan Alvarez

Informatics in Medicine Unlocked, 2019, 15, pp.100158. ⟨10.1016/j.imu.2019.02.002⟩

Article dans une revue hal-02192507v1
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Review: to be or not to be an identifiable model. Is this a relevant question in animal science modelling?

Rafael Munoz Tamayo , Laurence Puillet , J. Daniel , Daniel Sauvant , Olivier Martin et al.

Animal, 2018, 12 (04), pp.701 - 712. ⟨10.1017/S1751731117002774⟩

Article dans une revue (article de synthèse) hal-01526307v1
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Modeling and optimization of lipid accumulation by Yarrowia lipolytica from glucose under nitrogen depletion conditions

Carlos Robles Rodriguez , Rafael Munoz Tamayo , Carine Bideaux , Nathalie Gorret , Stéphane Guillouet et al.

Biotechnology and Bioengineering, 2018, 115 (5), pp.1-15. ⟨10.1002/bit.26537⟩

Article dans une revue hal-01713779v1
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Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present, and future

Sharon A. Huws , Christopher J. Creevey , Linda B. Oyama , Itzhak Mizrahi , Stuart E. Denman et al.

Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02161⟩

Article dans une revue (article de synthèse) hal-01890696v1
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Mechanistic modelling of in vitro fermentation and methane production by rumen microbiota

Rafael Munoz Tamayo , Sylvie Giger-Reverdin , Daniel Sauvant

Animal Feed Science and Technology, 2016, 220, pp.1-21. ⟨10.1016/j.anifeedsci.2016.07.005⟩

Article dans une revue hal-01349548v1
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Reply to the Comment on “Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production” by Baroukh et al. [Curr. Opin. Biotechnol. 2015, 33:198–205]

Caroline Baroukh , Rafael Munoz Tamayo , Olivier A. Bernard , Jean-Philippe Steyer

Current Opinion in Biotechnology, 2016, 38, pp.200 - 202. ⟨10.1016/j.copbio.2016.02.018⟩

Article dans une revue istex hal-01410975v1
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Adaptive control of light attenuation for optimizing microalgae production

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard

Journal of Process Control, 2015, 30, pp.117-124. ⟨10.1016/j.jprocont.2015.03.010⟩

Article dans une revue istex hal-01163455v1
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Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Olivier Bernard , Jean-Philippe Steyer

Current Opinion in Biotechnology, 2015, 33, pp.198-205. ⟨10.1016/j.copbio.2015.03.002⟩

Article dans une revue (article de synthèse) istex hal-01163456v1
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A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard

Metabolic Engineering, 2015, 30, pp.49-60. ⟨10.1016/j.ymben.2015.03.019⟩

Article dans une revue (article de synthèse) istex hal-01163453v1
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DRUM: A new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard

PLoS ONE, 2014, 9 (8), pp.e104499. ⟨10.1371/journal.pone.0104499⟩

Article dans une revue hal-01123224v1
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Getting the most out of it: optimal experiments for parameter estimation of microalgae growth models

Rafael Munoz Tamayo , Pierre Martinon , Gaël Bougaran , Francis Mairet , Olivier Bernard

Journal of Process Control, 2014, 24 (6), pp.991-1001. ⟨10.1016/j.jprocont.2014.04.021⟩

Article dans une revue hal-00998525v1
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Optimizing microalgal production in raceway systems

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard

Biotechnology Progress, 2013, 29 (2), pp.543--552. ⟨10.1002/btpr.1699⟩

Article dans une revue hal-00850376v1

Modeling peptide formation during the hydrolysis of β-casein by Lactococcus lactis

Rafael Munoz Tamayo , Jolan de Groot , Peter A. Wierenga , Harry Gruppen , Marcel H. Zwietering et al.

Process Biochemistry, 2012, 47 (1), pp.83-93. ⟨10.1016/j.procbio.2011.10.012⟩

Article dans une revue istex hal-02643666v1

Hydrolysis of β-casein by the cell-envelope-located PI-type protease of Lactococcus lactis: A modelling approach

Rafael Munoz Tamayo , Jolan de Groot , Edwin Bakx , Peter A. Wierenga , Harry Gruppen et al.

International Dairy Journal, 2011, 21 (10), pp.755-762. ⟨10.1016/j.idairyj.2011.03.012⟩

Article dans une revue istex hal-02648605v1
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Kinetic modelling of lactate utilization and butyrate production by key human colonic bacterial species

Rafael Munoz Tamayo , Béatrice Laroche , Eric Walter , Joel Dore , Sylvia Duncan et al.

FEMS Microbiology Ecology, 2011, 76 (3), pp.615-624. ⟨10.1111/j.1574-6941.2011.01085.x⟩

Article dans une revue hal-00655932v1
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Mathematical modelling of carbohydrate degradation by human colonic microbiota

Rafael Munoz Tamayo , Béatrice Laroche , Eric Walter , Joel Doré , Marion Leclerc

Journal of Theoretical Biology, 2010, 266 (1), pp.189-20. ⟨10.1016/j.jtbi.2010.05.040⟩

Article dans une revue istex hal-00521148v1

Towards the human intestinal microbiota phylogenetic core

Julien Tap , Stanislas Mondot , Florence Levenez , Eric Pelletier , Christophe Caron et al.

Environmental Microbiology, 2009, 11 (10), pp.2574-2584. ⟨10.1111/j.1462-2920.2009.01982.x⟩

Article dans une revue istex hal-02667864v1
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A theoretical optimal experiment design for accurate estimation of key parameters of a dynamic mechanistic model representing the effect of Asparagopsis taxiformis on rumen fermentation and methane production under in vitro continuous conditions

Rafael Muñoz-Tamayo , Tristan Senga Kiessé , Maguy Eugène , Paul Blondiaux

11. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut 2025), Agroscope, Sep 2025, Engelberg, Switzerland. pp.456, ⟨10.1016/j.anscip.2025.07.285⟩

Communication dans un congrès hal-05372609v1
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Use of a mechanistic model simulating in vitro rumen fermentation to evaluate the effect of nutritional strategies on rumen production and farm indices in intensive dairy farms

E. Fiorbelli , A.S. Atzori , Rafael Muñoz-Tamayo , A. Gallo

11. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut 2025), Agroscope, Sep 2025, Engelberg, Switzerland. pp.458-459, ⟨10.1016/j.anscip.2025.07.288⟩

Communication dans un congrès hal-05372651v1
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A conceptual model of the synergetic effect of combining the anti-methanogenic macroalgae Asparagopsis taxiformis with the hydrogen acceptor phloroglucinol: a strategy for methane mitigation with fermentation co-benefits for ruminants

A. Roger , Milka Popova , D. Yañez-Ruiz , R. Muñoz-Tamayo

11. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut 2025), Agroscope, Sep 2025, Engelberg, Switzerland. pp.482-483, ⟨10.1016/j.anscip.2025.07.315⟩

Communication dans un congrès hal-05372639v1
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Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on methane production in a rumen in vitro continuous system

Paul Blondiaux , Tristan Senga Kiessé , Maguy Eugène , Rafael Muñoz-Tamayo

75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Jan 2024, Florence, Italy. pp.329

Communication dans un congrès hal-04750366v1
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Degré d'infection : Proposition d'un modèle pour prendre en compte le caractère dynamique de l'état de santé et le lien avec la résilience au travers de l'exemple d'une infection mammaire

Pauline Martin , Gilles Foucras , Rafael Muñoz-Tamayo , Nicolas Friggens

27. Rencontres autour des recherches sur les ruminants (3R 2024), Institut de l'élevage [IDELE], INRAE, Dec 2024, Paris, France

Communication dans un congrès hal-05109049v1
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Exploring modelling approaches to address the dynamic nature of animal health

Pauline Martin , Foucras G. , Rafael Muñoz-Tamayo , Nicolas N.C. Friggens

75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Sep 2024, Florence, Italy. pp.805

Communication dans un congrès hal-04777992v1
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Using risk analysis to compare the accuracy of enteric methane emissions models of dairy cattle

Paul Blondiaux , E.H. Cabezas-Garcia , Tristan Senga Kiessé , Rafael Muñoz-Tamayo , K.F. Reed et al.

75. Annual Meeting of the European Federation of Animal Science (EAAP 2024), European Federation of Animal Science (EAAP), Jan 2024, Florence, Italy. pp.329

Communication dans un congrès hal-04750397v1

Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

D.P. Morgavi , Gonzalo Cantalapiedra-Hijar , Maguy Eugène , Cécile Martin , Pierre Noziere et al.

International Symposium on Energy and Protein Metabolism and Nutrition (ISEP 2022), EAAP, Sep 2022, Granada, Spain. pp.100830

Communication dans un congrès hal-04174207v1
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A dynamic mechanistic model of microbial fermentation and methane production in the cow rumen

Rafael Munoz Tamayo , Seppo Ahvenjärvi , Ali Reza Bayat , Ilma Tapio

ADSA Annual Meeting, ADSA, Jun 2023, Ottawa, Canada

Communication dans un congrès hal-04181482v1
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A dynamic in silico model of rumen microbial fermentation and methane production

Rafael Munoz Tamayo , S. Ahvenjärvi , A.R. Bayat , I. Tapio

74. Annual meeting of the european federation of animal science (EAAP), INRAE; EAAP, Aug 2023, Lyon, France. pp.325

Communication dans un congrès hal-04199208v1
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Peer Community In Animal Science: A free publication model for transparent and open science

Rafael Munoz Tamayo , Mohammed Gagaoua , Florence Gondret , M. Hess , Diego Morgavi et al.

2022 ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma City, United States. pp.80-81, ⟨10.1093/jas/skac247.158⟩

Communication dans un congrès hal-04138498v1
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The power of theoretical and practical identifiability analysis for modeling (micro-) biological processes

Rafael Munoz Tamayo

ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma, United States. pp.33

Communication dans un congrès hal-03748944v1
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Sensitivity analysis of a mechanistic model of the rumen in-vitro fermentation: Study of the impact of 3 sampling methods on Sobol indices of accuracy

Paul Blondiaux , Tristan Senga Kiessé , Maguy Eugène , Rafael Muñoz-Tamayo

Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT), Sep 2022, Alghero, Italy. pp.532-533, ⟨10.1016/j.anscip.2022.07.411⟩

Communication dans un congrès hal-04396965v1
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Towards the characterisation of animal robustness by dynamic energy allocation indicators in fattening pigs

Guillaume Lenoir , Rafael Munoz Tamayo , Loïc Flatres-Grall , Ingrid David , Nicolas N.C. Friggens

WCGALP 2022, Jul 2022, Rotterdam, Netherlands

Communication dans un congrès hal-03725117v1
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The shades of gray in model building and its opportunities for precision livestock farming

Rafael Munoz Tamayo

72. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland

Communication dans un congrès hal-03347173v1
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Genome-scale network reconstruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85

Fakih Ibrahim , Jeanne Got , Anne Siegel , Evelyne Forano , Rafael Munoz Tamayo

2021 - 12th International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France. pp.1 P;

Communication dans un congrès hal-03402155v1

Combining a process-based model of rumen fermentation with methane production data from respiration chambers

Helen Kettle , Rafael Munoz Tamayo , R.J. Dewhurst

75. Annual Conference of the British Society of Animal Science (BSAS), Apr 2019, Edinburgh, United Kingdom. ⟨10.1017/S2040470019000013⟩

Communication dans un congrès hal-02193900v1

Predictive capabilities of a dynamic mechanistic model of in vitro fermentation by rumen microbiota

Rafael Munoz Tamayo , Alberto Stanislao Atzori , Antonello Cannas , Francesco Masoero , Sylvie Giger-Reverdin et al.

61. Annual Meeting of the European Associationfor Animal Production (EAAP), 2019, NA, France

Communication dans un congrès hal-02193905v1
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How complex does a mathematical model need to be to describe the dynamics of methane production in cattle?

Rafael Munoz Tamayo , Helen Kettle , Baptiste Ruiz , Richard Williams , Peter J. Moate et al.

9. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (Modnut), Sep 2019, Ubatuba, Brazil

Communication dans un congrès hal-02790648v1
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Assessing the predictive capabilities of a dynamic mechanistic model of in vitro rumen fermentation and methane production

Rafael Muñoz-Tamayo , Alberto Stanislao Atzori , Antonello Cannas , Francesco Masoero , Sylvie Giger-Reverdin et al.

9. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT), Sep 2019, Ubatuba, Brazil. pp.320, ⟨10.1017/S2040470019000025⟩

Communication dans un congrès hal-04485501v1

Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approach

Rafael Munoz Tamayo , Milka Popova , Diego Morgavi , Dominique Graviou , Jean-Pierre Morel et al.

Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France

Communication dans un congrès hal-01840971v1

Tous les modèles doivent-ils être identifiables ?

Rafael Munoz Tamayo , Pierre Blavy , Laurence Puillet , Olivier Martin , Jean-Baptiste Daniel et al.

Journées Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. pp.1

Communication dans un congrès hal-01840968v1

Multivariate and network analysis identified microbial biomarkers linked to methane emission

Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura M. Zingaretti , Milka Popova , Núria Mach et al.

69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia

Communication dans un congrès hal-02881487v1

Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approach

Rafael Munoz Tamayo , Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier et al.

Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France

Communication dans un congrès hal-01840967v1

Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approach

Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura Zingaretti , Milka Popova , Núria Mach et al.

Gut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom

Communication dans un congrès hal-02738326v1

Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvation

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard

Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal

Communication dans un congrès hal-01603450v1
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A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvation

Caroline Baroukh , Olivier Bernard , Jean-Philippe Steyer , Rafael Munoz Tamayo , Benoit Chachuat

BioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France

Communication dans un congrès hal-01601441v1

Model-based optimization of lipid production by the oleaginous yeast Yarrowia lipolytica

Rafael Muñoz-Tamayo , Abril Ochoa Estopier , Stéphane Guillouet , Carole Molina-Jouve , C. Bideaux et al.

10. European Symposium on Biochemical Engineering Sciences, Sep 2014, Lille, France

Communication dans un congrès hal-05004228v1

Optimization of lipid production by oleaginous yeast in continuous culture

Rafael Munoz Tamayo , Cesar Arturo Aceves-Lara , Carine Bideaux

19. World Congress of the International Federation of Automatic Control, Aug 2014, Cape Town, South Africa

Communication dans un congrès hal-01268860v1
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Design of Optimal Experiments for Parameter Estimation of Microalgae Growth Models

Rafael Munoz Tamayo , Pierre Martinon , Gaël Bougaran , Francis Mairet , Olivier Bernard

International Symposium on Computer Applications to Biotechnology (CAB 2013), Dec 2013, Mumbai, India

Communication dans un congrès hal-00856749v1
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A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard

CAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India

Communication dans un congrès hal-00856042v2

A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle.

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard

Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom

Communication dans un congrès hal-01601779v1
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Adaptive control for optimizing microalgae production

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard

Computer Application in Biotechnology (CAB2013), Dec 2013, Mumbai, India

Communication dans un congrès hal-00921486v1
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Driving Species Competition in a Light-limited Chemostat

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard

9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Sep 2013, Toulouse, France

Communication dans un congrès hal-00852258v1
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Driving microalgal production in raceway systems to near optimal productivities.

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard

European Control Conference (ECC13), Jul 2013, Zurich, Switzerland

Communication dans un congrès hal-00852259v1

A closed-loop controller for optimizing nitrogen removal in a microalgal outdoor pond

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard

11. IWA Conference on Instrumentation Control and Automation, Sep 2013, Narbonne, France

Communication dans un congrès hal-02747879v1
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IDEAS: a parameter identification toolbox with symbolic analysis of uncertainty and its application to biological modelling

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc , Eric Walter

15. IFAC Symposium on System Identication (SYSID 2009), Jul 2009, Saint Malo, France. ⟨10.3182/20090706-3-FR-2004.00211⟩

Communication dans un congrès hal-01204242v1
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Modelling and identification of in vitro homoacetogenesis by human-colon bacteria

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc , Eric Walter

16. Mediterranean Conference on Control and Automation, 2008, Ajaccio, France

Communication dans un congrès hal-01204248v1

Control of a bioreactor using feedback linearization

Fabiola Angulo , Rafael Munoz Tamayo , Gerard Olivar

2007 Mediterranean Conference on Control & Automation (MED 2007), Jun 2007, Athènes, Greece. ⟨10.1109/MED.2007.4433763⟩

Communication dans un congrès hal-02755197v1
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Human colon: a complex bioreactor. Conceptual modelling for the anaerobic digestion of the functional trophic chain

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc

11. World Congress on Anaerobic Digestion, Sep 2007, Brisbane, Australia. 6 p

Communication dans un congrès hal-01204246v1

Breve elogio a la lentitud en ciencia

Rafael Munoz Tamayo

Ciencia y Humanismo 50 años Revista Aleph (1996-2016), Carlos Enrique Ruiz, 594 p., 2016, 978-958-8730-75-2

Chapitre d'ouvrage hal-02797416v1
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Evaluation of the precision and accuracy of models of enteric methane emissions from ruminants using Bayesian inference

Paul Blondiaux , Edward Hernando Cabezas-Garcia , Tristan Senga Kiessé , Rafael Muñoz-Tamayo , Kristan Foster Reed et al.

2025

Pré-publication, Document de travail hal-04988924v1
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Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on rumen fermentation and methane production under in vitro continuous conditions

Paul Blondiaux , Tristan Senga Kiessé , Maguy Eugène , Rafael Muñoz-Tamayo

2024

Pré-publication, Document de travail hal-04628905v1
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Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling

Mohsen Davoudkhani , Francesco Rubino , Christopher J Creevey , Seppo Ahvenjärvi , Ali R Bayat et al.

2023

Pré-publication, Document de travail hal-04253680v1
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Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium<i>Fibrobacter succinogenes</i>S85

Ibrahim Fakih , Jeanne Got , Carlos Eduardo Robles-Rodriguez , Anne Siegel , Evelyne Forano et al.

2022

Pré-publication, Document de travail hal-03871397v1
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Seven steps to enhance open science practices in animal science

Rafael Munoz Tamayo , Birte L Nielsen , Mohammed Gagaoua , Florence Gondret , E Tobias Krause et al.

2022

Pré-publication, Document de travail (preprint/prepublication) hal-03544902v2
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Towards the next generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies

Rafael Munoz Tamayo , Mohsen Davoudkhani , Ibrahim Fakih , C.E. Robles Rodriguez , Francesco Rubino et al.

2022

Pré-publication, Document de travail hal-03871472v1
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The power of identifiability analysis for dynamic modeling in animal science: A practitioner approach

Rafael Munoz Tamayo , Luis O. Tedeschi

2022

Pré-publication, Document de travail (preprint/prepublication) hal-03878727v1
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Intake time as potential predictor of methane emissions from cattle.

John F. Ramirez-Agudelo , Carlos S. Escobar-Restrepo , Rafael Munoz Tamayo , Sandra L. Posada-Ochoa , Ricardo Rosero-Noguera

2022

Pré-publication, Document de travail (preprint/prepublication) hal-03604356v1
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A filtering algorithm for accurate determination of feed intake dynamics

Pierre Blavy , O Dhumez , B L Nielsen , Rafael Munoz Tamayo , Nicolas N.C. Friggens et al.

2020

Pré-publication, Document de travail hal-02959928v1
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Quantifying growth perturbations over the fattening period in swine via mathematical modelling

Manuel Revilla , Guillaume Lenoir , Loïc Flatres-Grall , Rafael Munoz Tamayo , Nicolas C Friggens

2021

Pré-publication, Document de travail (preprint/prepublication) hal-03346812v1

Modelling the impact of the macroalgae Asparagopsis taxiformis on rumen microbial fermentation

Rafael Munoz Tamayo , Juana Chagas , Mohammad Ramin , Sophie J. Krizsan

2020

Pré-publication, Document de travail hal-03024873v1
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A brief tribute to slowness in science *

Rafael Munoz Tamayo

2019

Pré-publication, Document de travail hal-02369434v1
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Towards the quantitative characterization of piglets' robustness to weaning: A modelling approach

Manuel Revilla , Nicolas N.C. Friggens , Laurent Broudiscou , G. Lemonnier , F. Blanc et al.

2018

Pré-publication, Document de travail (preprint/prepublication) hal-02369432v1
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On Parameter Interpretability of Phenomenological-Based Semiphysical Models

Laura Lema Perez , Rafael Munoz Tamayo , Jose Fernando Garcia Tirado , Hernan Alvarez

2018

Pré-publication, Document de travail (preprint/prepublication) hal-02788220v1
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Hydrogenotrophic methanogens of the mammalian gut: functionally similar, thermodynamically different -A modelling approach

Rafael Munoz Tamayo , Milka Popova , Maxence Tillier , Diego Morgavi , Gérard Fonty et al.

2018

Pré-publication, Document de travail (preprint/prepublication) hal-02369430v1
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A brief tribute to slowness in science

Rafael Munoz Tamayo

2018

Pré-publication, Document de travail (preprint/prepublication) hal-02786714v1
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A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle

Rafael Munoz Tamayo , J F Ramírez Agudelo , R. Dewhurst , G Miller , T Vernon et al.

2018

Pré-publication, Document de travail (preprint/prepublication) hal-02369431v1
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A modelling odyssey in the tree of life

Rafael Munoz Tamayo

Modeling and Simulation. Université Paris Sud (Paris 11), 2019

HDR tel-02183063v1