Rafael Muñoz-Tamayo

67%
Libre accès
93
Documents
Affiliation actuelle
  • Modélisation Systémique Appliquée aux Ruminants (MoSAR)
Contact

Présentation

I am a mathematical modeller of biological systems. I am from Colombia. I have an undergraduate in chemical engineering and a MSc automatic control degree from Universidad Nacional de Colombia. I did my PhD in applied mathematics at Université Paris-Sud (France).

I am a researcher at INRAE (France) in the MoSAR team since 2014. My research motivation is to develop a quantitative understanding of biological processes using modelling to combine and structure information across disciplines. My research project aims to enhance understanding of the dynamic interplay between the diet, the rumen microbiota and the ruminant animal via an interdisciplinary approach covering microbiology, chemistry, thermodynamics, animal nutrition, computational biology and mathematical modelling. My ultimate goal is to produce innovative model-based solutions to major challenges facing agriculture such as efficient ruminant production. I have an international path with significant experience in being the fulcrum in interdisciplinary projects within a network of more than 60 international scientists and 41 publications. I am strongly engaged in the open science movement with leading roles at institutional and international levels for enhancing open science practices and thus contributing to make open science the new normal. I am founder of the Open Science initiative Peer Community In ( PCI) Animal Science. For more information about my research please visit my web site.

Domaines de recherche

Modélisation et simulation

Compétences

modelling microbial ecosystems dynamic systems Open Science

Publications

38
22
6
4
3
3
3
2
2
2
1
1
1
1
1
1
1
1
19
9
7
5
5
5
4
4
4
4
4
4
4
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
12
10
9
8
8
8
8
7
7
7
7
7
7
6
5
5
5
5
5
4
4
4
4
4
4
3
3
3
3
3
3
3
3
3
3
3
3
3
3
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
6
3
3
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
2
6
10
14
4
3
10
13
3
5
4
8
1
2
2
3
1
2
4
3
1
1
3
1
1
1
27
39
14
6
5
3
2
2
2
2
2
2
2
1
1

Publications

Image document

Desarrollo de un modelo dinámico mecanicista para predecir el crecimiento de cuyes (Cavia porcellus) machos del genotipo Perúcir el crecimiento de cuyes (Cavia porcellus) machos del genotipo Perú

William Armando Tapie , Sandra Lucía Posada-Ochoa , Jaime Ricardo Rosero-Noguera , Rafael Muñoz-Tamayo
Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales, 2024, 48, pp.859 - 870. ⟨10.18257/raccefyn.2997⟩
Article dans une revue hal-04912246 v1
Image document

Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling

Mohsen Davoudkhani , Francesco Rubino , Christopher J Creevey , Seppo Ahvenjärvi , Ali R Bayat et al.
PLoS ONE, 2024, 19 (3), pp.e0298930. ⟨10.1371/journal.pone.0298930⟩
Article dans une revue hal-04558514 v1
Image document

Disentangling the dynamics of energy allocation to provide a proxy of robustness in fattening pigs

Guillaume Lenoir , Loïc Flatres-Grall , Rafael Muñoz-Tamayo , Ingrid David , Nicolas C Friggens
Genetics Selection Evolution, 2023, 55 (1), pp.77. ⟨10.1186/s12711-023-00851-w⟩
Article dans une revue hal-03871410 v2
Image document

Review: Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

D.P. Morgavi , Gonzalo Cantalapiedra-Hijar , Maguy Eugène , Cécile Martin , Pierre Noziere et al.
Animal, 2023, 17, pp.100830. ⟨10.1016/j.animal.2023.100830⟩
Article dans une revue (article de synthèse) hal-04174171 v1
Image document

ASAS-NANP symposium: Mathematical Modeling in Animal Nutrition: The power of identifiability analysis for dynamic modeling in animal science:a practitioner approach

Rafael Muñoz-Tamayo , Luis O Tedeschi
Journal of Animal Science, 2023, 101, pp.1-13. ⟨10.1093/jas/skad320⟩
Article dans une revue hal-04302072 v1
Image document

Review: Towards the next-generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies

R. Muñoz-Tamayo , M. Davoudkhani , I. Fakih , C.E. Robles-Rodriguez , F. Rubino et al.
Animal, 2023, 17 (Suppl. 5), pp.100984. ⟨10.1016/j.animal.2023.100984⟩
Article dans une revue hal-04255485 v1
Image document

Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium <i>Fibrobacter succinogenes</i> S85

Ibrahim Fakih , Jeanne Got , Carlos Eduardo Robles-Rodriguez , Anne Siegel , Evelyne Forano et al.
mSystems, 2023, 8 (3), pp.1-23. ⟨10.1128/msystems.01027-22⟩
Article dans une revue hal-04131368 v1
Image document

Animal board invited review: Quantification of resilience in farm animals

M. Taghipoor , M. Pastell , Olivier Martin , Hieu Nguyen-Ba , Jaap J. van Milgen et al.
Animal, 2023, 17 (9), pp.100925. ⟨10.1016/j.animal.2023.100925⟩
Article dans une revue (article de synthèse) hal-04214047 v1
Image document

Dynamic data of body weight and feed intake in fattening pigs, and the determination of energetic allocation factors using a dynamic linear model

Guillaume Lenoir , K. Kashefifard , C. Chesnet , Loïc Flatres-Grall , Rafael Munoz Tamayo
Animal - Open Space, 2022, 1 (1), ⟨10.1016/j.anopes.2022.100014⟩
Article dans une revue hal-03747370 v1
Image document

Seven steps to enhance Open Science practices in animal science

Rafael Muñoz-Tamayo , Birte L Nielsen , Mohammed Gagaoua , Florence Gondret , E Tobias Krause et al.
PNAS Nexus, 2022, 1 (3), pp.1-6. ⟨10.1093/pnasnexus/pgac106⟩
Article dans une revue hal-03749515 v1
Image document

Rumen microbial genomics: from cells to genes (and back to cells)

Milka Popova , Ibrahim Fakih , Evelyne Forano , Anne Siegel , Rafael Muñoz-Tamayo et al.
CAB Reviews Perspectives in Agriculture Veterinary Science Nutrition and Natural Resources, 2022, 2022, ⟨10.1079/cabireviews202217025⟩
Article dans une revue (article de synthèse) hal-03929845 v1
Image document

Quantifying growth perturbations over the fattening period in swine via mathematical modelling

Manuel Revilla , Guillaume Lenoir , Flatres-Grall Loïc , Rafael Munoz Tamayo , Nicolas C Friggens
Peer Community Journal, 2022, 2, pp.e9. ⟨10.24072/pcjournal.82⟩
Article dans une revue hal-03545140 v1
Image document

Predicting the dynamics of enteric methane emissions based on intake kinetic patterns in dairy cows fed diets containing either wheat or corn

Rafael Munoz Tamayo , B. Ruiz , Pierre Blavy , Sylvie Giger-Reverdin , Daniel Sauvant et al.
Animal - Open Space, 2022, 1 (1), pp.100003. ⟨10.1016/j.anopes.2021.100003⟩
Article dans une revue hal-03561639 v1
Image document

Dynamic data for determining the accuracy of four open-circuit respiration chambers designed to quantify methane emissions from goats

Ophelie Dhumez , J. Tessier , Maguy Eugène , A.I. Martín-García , Alexandra Eymard et al.
Animal - Open Space, 2022, 1 (1), pp.100006. ⟨10.1016/j.anopes.2022.100006⟩
Article dans une revue hal-03594433 v1
Image document

Modelling the impact of the macroalgae <i>Asparagopsis taxiformis</i> on rumen microbial fermentation and methane production

Rafael Munoz Tamayo , Juana C Chagas , Mohammad Ramin , Sophie J Krizsan
Peer Community Journal, 2021, 1, pp.e7. ⟨10.24072/pcjournal.11⟩
Article dans une revue hal-03545126 v1
Image document

A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle

Rafael Munoz Tamayo , J. Ramírez Agudelo , R. Dewhurst , G. Miller , T. Vernon et al.
Animal, 2019, 13 (06), pp.1180-1187. ⟨10.1017/S1751731118002550⟩
Article dans une revue hal-02369429 v1
Image document

Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach

Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier , Fany Blanc et al.
Animal, 2019, First view (11), pp.1-11. ⟨10.1017/S1751731119000843⟩
Article dans une revue hal-02192515 v1
Image document

Hydrogenotrophic methanogens of the mammalian gut: Functionally similar, thermodynamically different—A modelling approach

Rafael Munoz Tamayo , Milka Popova , Maxence Tillier , Diego Morgavi , Jean-Pierre Morel et al.
PLoS ONE, 2019, 14 (12), pp.e0226243. ⟨10.1371/journal.pone.0226243⟩
Article dans une revue hal-02473686 v1
Image document

On parameter interpretability of phenomenological-based semiphysical models in biology

Laura Lema-Perez , Rafael Munoz Tamayo , Jose Garcia-Tirado , Hernan Alvarez
Informatics in Medicine Unlocked, 2019, 15, pp.100158. ⟨10.1016/j.imu.2019.02.002⟩
Article dans une revue hal-02192507 v1
Image document

Review: to be or not to be an identifiable model. Is this a relevant question in animal science modelling?

Rafael Munoz Tamayo , Laurence Puillet , J. Daniel , Daniel Sauvant , Olivier Martin et al.
Animal, 2018, 12 (04), pp.701 - 712. ⟨10.1017/S1751731117002774⟩
Article dans une revue (article de synthèse) hal-01526307 v1
Image document

Modeling and optimization of lipid accumulation by Yarrowia lipolytica from glucose under nitrogen depletion conditions

Carlos Robles Rodriguez , Rafael Munoz Tamayo , Carine Bideaux , Nathalie Gorret , Stéphane Guillouet et al.
Biotechnology and Bioengineering, 2018, 115 (5), pp.1-15. ⟨10.1002/bit.26537⟩
Article dans une revue hal-01713779 v1
Image document

Addressing global ruminant agricultural challenges through understanding the rumen microbiome: Past, present, and future

Sharon A. Huws , Christopher J. Creevey , Linda B. Oyama , Itzhak Mizrahi , Stuart E. Denman et al.
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02161⟩
Article dans une revue (article de synthèse) hal-01890696 v1
Image document

Mechanistic modelling of in vitro fermentation and methane production by rumen microbiota

Rafael Munoz Tamayo , Sylvie Giger-Reverdin , Daniel Sauvant
Animal Feed Science and Technology, 2016, 220, pp.1-21. ⟨10.1016/j.anifeedsci.2016.07.005⟩
Article dans une revue hal-01349548 v1

Reply to the Comment on “Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production” by Baroukh et al. [Curr. Opin. Biotechnol. 2015, 33:198–205]

Caroline Baroukh , Rafael Munoz Tamayo , Olivier A. Bernard , Jean-Philippe Steyer
Current Opinion in Biotechnology, 2016, 38, pp.200 - 202. ⟨10.1016/j.copbio.2016.02.018⟩
Article dans une revue hal-01410975 v1

Adaptive control of light attenuation for optimizing microalgae production

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard
Journal of Process Control, 2015, 30, pp.117-124. ⟨10.1016/j.jprocont.2015.03.010⟩
Article dans une revue hal-01163455 v1

A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Engineering, 2015, 30, pp.49-60. ⟨10.1016/j.ymben.2015.03.019⟩
Article dans une revue (article de synthèse) hal-01163453 v1

Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production

Caroline Baroukh , Rafael Munoz Tamayo , Olivier Bernard , Jean-Philippe Steyer
Current Opinion in Biotechnology, 2015, 33, pp.198-205. ⟨10.1016/j.copbio.2015.03.002⟩
Article dans une revue (article de synthèse) hal-01163456 v1
Image document

DRUM: A new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
PLoS ONE, 2014, 9 (8), pp.e104499. ⟨10.1371/journal.pone.0104499⟩
Article dans une revue hal-01123224 v1
Image document

Getting the most out of it: optimal experiments for parameter estimation of microalgae growth models

Rafael Munoz Tamayo , Pierre Martinon , Gaël Bougaran , Francis Mairet , Olivier Bernard
Journal of Process Control, 2014, 24 (6), pp.991-1001. ⟨10.1016/j.jprocont.2014.04.021⟩
Article dans une revue hal-00998525 v1
Image document

Optimizing microalgal production in raceway systems

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard
Biotechnology Progress, 2013, 29 (2), pp.543--552. ⟨10.1002/btpr.1699⟩
Article dans une revue hal-00850376 v1

Modeling peptide formation during the hydrolysis of β-casein by Lactococcus lactis

Rafael Munoz Tamayo , Jolan de Groot , Peter A. Wierenga , Harry Gruppen , Marcel H. Zwietering et al.
Process Biochemistry, 2012, 47 (1), pp.83-93. ⟨10.1016/j.procbio.2011.10.012⟩
Article dans une revue istex hal-02643666 v1

Hydrolysis of β-casein by the cell-envelope-located PI-type protease of Lactococcus lactis: A modelling approach

Rafael Munoz Tamayo , Jolan de Groot , Edwin Bakx , Peter A. Wierenga , Harry Gruppen et al.
International Dairy Journal, 2011, 21 (10), pp.755-762. ⟨10.1016/j.idairyj.2011.03.012⟩
Article dans une revue istex hal-02648605 v1
Image document

Kinetic modelling of lactate utilization and butyrate production by key human colonic bacterial species

Rafael Munoz Tamayo , Béatrice Laroche , Eric Walter , Joel Dore , Sylvia Duncan et al.
FEMS Microbiology Ecology, 2011, 76 (3), pp.615-624. ⟨10.1111/j.1574-6941.2011.01085.x⟩
Article dans une revue hal-00655932 v1

Mathematical modelling of carbohydrate degradation by human colonic microbiota

Rafael Munoz Tamayo , Béatrice Laroche , Eric Walter , Joel Doré , Marion Leclerc
Journal of Theoretical Biology, 2010, 266 (1), pp.189-20. ⟨10.1016/j.jtbi.2010.05.040⟩
Article dans une revue istex hal-00521148 v1

Towards the human intestinal microbiota phylogenetic core

Julien Tap , Stanislas Mondot , Florence F. Levenez , Eric Pelletier , Christophe C. Caron et al.
Environmental Microbiology, 2009, 11 (10), pp.2574-2584. ⟨10.1111/j.1462-2920.2009.01982.x⟩
Article dans une revue istex hal-02667864 v1

Exploring modelling approaches to address the dynamic nature of animal health

Pauline Martin , Foucras G. , Rafael Muñoz-Tamayo , Nicolas N.C. Friggens
75. Annual meeting of the european federation of animal science (EAAP), EAAP, Sep 2024, Florence, Italy. pp.805
Communication dans un congrès hal-04777992 v1

Using risk analysis to compare the accuracy of enteric methane emissions models of dairy cattle

Paul Blondiaux , E.H. Cabezas-Garcia , Tristan Senga Kiessé , Rafael Muñoz-Tamayo , K.F. Reed et al.
75. Annual Meeting of the European Federation of Animal Science, EAAP, Jan 2024, Florence, Italy. pp.329
Communication dans un congrès hal-04750397 v1

Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on methane production in a rumen in vitro continuous system

Paul Blondiaux , Tristan Senga Kiessé , Maguy Eugène , Rafael Muñoz-Tamayo
75. Annual Meeting of the European Federation of Animal Science, EAAP, Jan 2024, Florence, Italy. pp.329
Communication dans un congrès hal-04750366 v1

Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

D.P. Morgavi , Gonzalo Cantalapiedra-Hijar , Maguy Eugène , Cécile Martin , Pierre Noziere et al.
International Symposium on Energy and Protein Metabolism and Nutrition (ISEP 2022), EAAP, Sep 2022, Granada, Spain. pp.100830
Communication dans un congrès hal-04174207 v1

A dynamic in silico model of rumen microbial fermentation and methane production

Rafael Munoz Tamayo , S. Ahvenjärvi , A.R. Bayat , I. Tapio
Book of Abstracts of the 74. Annual Meeting of the European Federation of Animal Science, INRAE, Aug 2023, Lyon, France. pp.325
Communication dans un congrès hal-04199208 v1
Image document

A dynamic mechanistic model of microbial fermentation and methane production in the cow rumen

Rafael Munoz Tamayo , Seppo Ahvenjärvi , Ali Reza Bayat , Ilma Tapio
ADSA Annual Meeting, ADSA, Jun 2023, Ottawa, Canada
Communication dans un congrès hal-04181482 v1
Image document

Peer Community In Animal Science: A free publication model for transparent and open science

Rafael Munoz Tamayo , Mohammed Gagaoua , Florence Gondret , M. Hess , Diego Morgavi et al.
2022 ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma City, United States. pp.80-81, ⟨10.1093/jas/skac247.158⟩
Communication dans un congrès hal-04138498 v1
Image document

The power of theoretical and practical identifiability analysis for modeling (micro-) biological processes

Rafael Munoz Tamayo
ASAS-CSAS Annual Meeting, Jun 2022, Oklahoma, United States. pp.33
Communication dans un congrès hal-03748944 v1
Image document

Towards the characterisation of animal robustness by dynamic energy allocation indicators in fattening pigs

Guillaume Lenoir , Rafael Munoz Tamayo , Loïc Flatres-Grall , Ingrid David , Nicolas N.C. Friggens
WCGALP 2022, Jul 2022, Rotterdam, Netherlands
Communication dans un congrès hal-03725117 v1

Genome-scale network reconstruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85

Fakih Ibrahim , Jeanne Got , Anne Siegel , Evelyne Forano , Rafael Munoz Tamayo
2021 - 12th International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France
Communication dans un congrès hal-03402155 v1
Image document

The shades of gray in model building and its opportunities for precision livestock farming

Rafael Munoz Tamayo
72. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2021, Davos, Switzerland
Communication dans un congrès hal-03347173 v1

Genome-scale network recostruction of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85

Ibrahim Fakih , J. Got , Anne Siegel , Evelyne Forano , Rafael Muñoz-Tamayo
12th International Symposium on Gut Microbiology, Oct 2021, Virtual conference, France
Communication dans un congrès hal-04843685 v1

Combining a process-based model of rumen fermentation with methane production data from respiration chambers

Helen Kettle , Rafael Munoz Tamayo , R.J. Dewhurst
75. Annual Conference of the British Society of Animal Science (BSAS), Apr 2019, Edinburgh, United Kingdom. ⟨10.1017/S2040470019000013⟩
Communication dans un congrès hal-02193900 v1

How complex does a mathematical model need to be to describe the dynamics of methane production in cattle?

Rafael Munoz Tamayo , Helen Kettle , Baptiste Ruiz , Richard Williams , Peter J. Moate et al.
MODNUT, 2019
Communication dans un congrès hal-02790648 v1

Predictive capabilities of a dynamic mechanistic model of in vitro fermentation by rumen microbiota

Rafael Munoz Tamayo , Alberto Stanislao Atzori , Antonello Cannas , Francesco Masoero , Sylvie Giger-Reverdin et al.
61. Annual Meeting of the European Associationfor Animal Production (EAAP), 2019, NA, France
Communication dans un congrès hal-02193905 v1
Image document

Assessing the predictive capabilities of a dynamic mechanistic model of in vitro rumen fermentation and methane production

Rafael Muñoz-Tamayo , Alberto Stanislao Atzori , Antonello Cannas , Francesco Masoero , Sylvie Giger-Reverdin et al.
9. Workshop on Modelling Nutrient Digestion and Utilization in Farm Animals (MODNUT), Sep 2019, Ubatuba, Brazil. pp.320, ⟨10.1017/S2040470019000025⟩
Communication dans un congrès hal-04485501 v1

Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approach

Rafael Munoz Tamayo , Manuel Revilla Sanchez , Nicolas N.C. Friggens , Laurent Broudiscou , Gaetan Lemonnier et al.
Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Communication dans un congrès hal-01840967 v1

Multivariate and network analysis identified microbial biomarkers linked to methane emission

Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura M. Zingaretti , Milka Popova , Núria Mach et al.
69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia
Communication dans un congrès hal-02881487 v1

Tous les modèles doivent-ils être identifiables ?

Rafael Munoz Tamayo , Pierre Blavy , Laurence Puillet , Olivier Martin , Jean-Baptiste Daniel et al.
Journées Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. pp.1
Communication dans un congrès hal-01840968 v1

Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approach

Rafael Munoz Tamayo , Milka Popova , Diego Morgavi , Dominique Graviou , Jean-Pierre Morel et al.
Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France
Communication dans un congrès hal-01840971 v1

Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approach

Yuliaxis Ramayo Caldas , Aurélien Bernard , Laura Zingaretti , Milka Popova , Núria Mach et al.
Gut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom
Communication dans un congrès hal-02738326 v1
Image document

A new approach to unravel metabolic regulations. Application to microalgae growth and lipid production under day/night cycles and nitrogen starvation

Caroline Baroukh , Olivier Bernard , Jean-Philippe Steyer , Rafael Munoz Tamayo , Benoit Chachuat
BioSynSys 2015 : 1er colloque du GDR "Biologie de Synthèse et des Systèmes", Sep 2015, Paris, France
Communication dans un congrès hal-01601441 v1

Metabolic modeling of microalgae growth and lipids production during day/night cycles and nitrogen starvation

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal
Communication dans un congrès hal-01603450 v1

Model-based optimization of lipid production by the oleaginous yeast Yarrowia lipolytica

Rafael Muñoz-Tamayo , Abril Ochoa Estopier , Stéphane Guillouet , Carole Molina-Jouve , C. Bideaux et al.
10. European Symposium on Biochemical Engineering Sciences, Sep 2014, Lille, France
Communication dans un congrès hal-05004228 v1

Optimization of lipid production by oleaginous yeast in continuous culture

Rafael Munoz Tamayo , Cesar Arturo Aceves-Lara , Carine Bideaux
19. World Congress of the International Federation of Automatic Control, Aug 2014, Cape Town, South Africa
Communication dans un congrès hal-01268860 v1
Image document

A new framework for metabolic modeling under non-balanced growth. Application to carbon metabolism of unicellular microalgae

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
CAB 2013 - International on Computer Applications to Biotechnology, Dec 2013, Mumbai, India
Communication dans un congrès hal-00856042 v2
Image document

Design of Optimal Experiments for Parameter Estimation of Microalgae Growth Models

Rafael Munoz Tamayo , Pierre Martinon , Gaël Bougaran , Francis Mairet , Olivier Bernard
International Symposium on Computer Applications to Biotechnology (CAB 2013), Dec 2013, Mumbai, India
Communication dans un congrès hal-00856749 v1

A new framework for metabolic modelling under non-balanced growth. Application to photoautotrophic microalgae in day/night cycle.

Caroline Baroukh , Rafael Munoz Tamayo , Jean-Philippe Steyer , Olivier Bernard
Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
Communication dans un congrès hal-01601779 v1
Image document

Adaptive control for optimizing microalgae production

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard
Computer Application in Biotechnology (CAB2013), Dec 2013, Mumbai, India
Communication dans un congrès hal-00921486 v1
Image document

Driving microalgal production in raceway systems to near optimal productivities.

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard
European Control Conference (ECC13), Jul 2013, Zurich, Switzerland
Communication dans un congrès hal-00852259 v1
Image document

Driving Species Competition in a Light-limited Chemostat

Francis Mairet , Rafael Munoz Tamayo , Olivier Bernard
9th IFAC Symposium on Nonlinear Control Systems (NOLCOS), Sep 2013, Toulouse, France
Communication dans un congrès hal-00852258 v1

A closed-loop controller for optimizing nitrogen removal in a microalgal outdoor pond

Rafael Munoz Tamayo , Francis Mairet , Olivier Bernard
11. IWA Conference on Instrumentation Control and Automation, Sep 2013, Narbonne, France
Communication dans un congrès hal-02747879 v1
Image document

IDEAS: a parameter identification toolbox with symbolic analysis of uncertainty and its application to biological modelling

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc , Eric Walter
15. IFAC Symposium on System Identication (SYSID 2009), Jul 2009, Saint Malo, France. ⟨10.3182/20090706-3-FR-2004.00211⟩
Communication dans un congrès hal-01204242 v1

Modelling and identification of in vitro homoacetogenesis by human-colon bacteria

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc , Eric Walter
16. Mediterranean Conference on Control and Automation, 2008, Ajaccio, France
Communication dans un congrès hal-01204248 v1
Image document

Human colon: a complex bioreactor. Conceptual modelling for the anaerobic digestion of the functional trophic chain

Rafael Munoz Tamayo , Béatrice Laroche , Marion Leclerc
11. World Congress on Anaerobic Digestion, Sep 2007, Brisbane, Australia. 6 p
Communication dans un congrès hal-01204246 v1

Control of a bioreactor using feedback linearization

Fabiola Angulo , Rafael Munoz Tamayo , Gerard Olivar
2007 Mediterranean Conference on Control & Automation (MED 2007), Jun 2007, Athènes, Greece. ⟨10.1109/MED.2007.4433763⟩
Communication dans un congrès hal-02755197 v1

Breve elogio a la lentitud en ciencia

Rafael Munoz Tamayo
Ciencia y Humanismo 50 años Revista Aleph (1996-2016), Carlos Enrique Ruiz, 594 p., 2016, 978-958-8730-75-2
Chapitre d'ouvrage hal-02797416 v1
Image document

Evaluation of the precision and accuracy of models of enteric methane emissions from ruminants using Bayesian inference

Paul Blondiaux , Edward Hernando Cabezas-Garcia , Tristan Senga Kiessé , Rafael Muñoz-Tamayo , Kristan Foster Reed et al.
2025
Pré-publication, Document de travail hal-04988924 v1
Image document

Dynamic sensitivity analysis of a mathematical model describing the effect of the macroalgae Asparagopsis taxiformis on rumen fermentation and methane production under in vitro continuous conditions

Paul Blondiaux , Tristan Senga Kiessé , Maguy Eugène , Rafael Muñoz-Tamayo
2024
Pré-publication, Document de travail hal-04628905 v1
Image document

Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling

Mohsen Davoudkhani , Francesco Rubino , Christopher J Creevey , Seppo Ahvenjärvi , Ali R Bayat et al.
2023
Pré-publication, Document de travail hal-04253680 v1
Image document

Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium<i>Fibrobacter succinogenes</i>S85

Ibrahim Fakih , Jeanne Got , Carlos Eduardo Robles-Rodriguez , Anne Siegel , Evelyne Forano et al.
2022
Pré-publication, Document de travail hal-03871397 v1
Image document

Towards the next generation models of the rumen microbiome for enhancing predictive power and guiding sustainable production strategies

Rafael Munoz Tamayo , Mohsen Davoudkhani , Ibrahim Fakih , C.E. Robles Rodriguez , Francesco Rubino et al.
2022
Pré-publication, Document de travail hal-03871472 v1
Image document

Seven steps to enhance open science practices in animal science

Rafael Munoz Tamayo , Birte L Nielsen , Mohammed Gagaoua , Florence Gondret , E Tobias Krause et al.
2022
Pré-publication, Document de travail (preprint/prepublication) hal-03544902 v2
Image document

The power of identifiability analysis for dynamic modeling in animal science: A practitioner approach

Rafael Munoz Tamayo , Luis O. Tedeschi
2022
Pré-publication, Document de travail (preprint/prepublication) hal-03878727 v1
Image document

Intake time as potential predictor of methane emissions from cattle.

John F. Ramirez-Agudelo , Carlos S. Escobar-Restrepo , Rafael Munoz Tamayo , Sandra L. Posada-Ochoa , Ricardo Rosero-Noguera
2022
Pré-publication, Document de travail (preprint/prepublication) hal-03604356 v1
Image document

Quantifying growth perturbations over the fattening period in swine via mathematical modelling

Manuel Revilla , Guillaume Lenoir , Loïc Flatres-Grall , Rafael Munoz Tamayo , Nicolas C Friggens
2021
Pré-publication, Document de travail (preprint/prepublication) hal-03346812 v1
Image document

A filtering algorithm for accurate determination of feed intake dynamics

Pierre Blavy , O Dhumez , B L Nielsen , Rafael Munoz Tamayo , Nicolas N.C. Friggens et al.
2020
Pré-publication, Document de travail hal-02959928 v1

Modelling the impact of the macroalgae Asparagopsis taxiformis on rumen microbial fermentation

Rafael Munoz Tamayo , Juana Chagas , Mohammad Ramin , Sophie J. Krizsan
2020
Pré-publication, Document de travail hal-03024873 v1
Image document

A brief tribute to slowness in science *

Rafael Munoz Tamayo
2019
Pré-publication, Document de travail hal-02369434 v1
Image document

On Parameter Interpretability of Phenomenological-Based Semiphysical Models

Laura Lema Perez , Rafael Munoz Tamayo , Jose Fernando Garcia Tirado , Hernan Alvarez
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02788220 v1
Image document

Towards the quantitative characterization of piglets' robustness to weaning: A modelling approach

Manuel Revilla , Nicolas N.C. Friggens , Laurent Broudiscou , G. Lemonnier , F. Blanc et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02369432 v1
Image document

A brief tribute to slowness in science

Rafael Munoz Tamayo
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02786714 v1
Image document

Hydrogenotrophic methanogens of the mammalian gut: functionally similar, thermodynamically different -A modelling approach

Rafael Munoz Tamayo , Milka Popova , Maxence Tillier , Diego Morgavi , Gérard Fonty et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02369430 v1
Image document

A parsimonious software sensor for estimating the individual dynamic pattern of methane emissions from cattle

Rafael Munoz Tamayo , J F Ramírez Agudelo , R. Dewhurst , G Miller , T Vernon et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02369431 v1
Image document

A modelling odyssey in the tree of life

Rafael Munoz Tamayo
Modeling and Simulation. Université Paris Sud (Paris 11), 2019
HDR tel-02183063 v1