|
|
Demultiplexing and barcode-specific adaptive sampling for nanopore direct RNA sequencing
Wiep van der Toorn
,
Patrick Bohn
,
Wang Liu-Wei
,
Marco Olguin-Nava
,
Anne-Sophie Gribling-Burrer
et al.
Article dans une revue
hal-05221440
v1
|
|
|
Selectively expressed RNA molecules as a versatile tool for functionalized cell targeting
Frederik Rastfeld
,
Marco Hoffmann
,
Sylvie Krüger
,
Patrick Bohn
,
Anne-Sophie Gribling-Burrer
et al.
Article dans une revue
hal-05362432
v1
|
|
|
Giant RNA genomes: Roles of host, translation elongation, genome architecture, and proteome in nidoviruses
Benjamin W Neuman
,
Alexandria Smart
,
Orian Gilmer
,
Redmond Smyth
,
Josef Vaas
et al.
Article dans une revue
hal-05362414
v1
|
|
|
The translational landscape of HIV-1 infected cells reveals key gene regulatory principles
Anuja Kibe
,
Stefan Buck
,
Anne-Sophie Gribling-Burrer
,
Orian Gilmer
,
Patrick Bohn
et al.
Article dans une revue
hal-05362403
v1
|
|
|
Visualizing the transcription and replication of influenza A viral RNAs in cells by multiple direct RNA padlock probing and <i>in situ</i> sequencing (mudRapp-seq)
Shazeb Ahmad
,
Jianhui Li
,
Joél Schaust
,
Anne-Sophie Gribling-Burrer
,
Nina Geiger
et al.
Article dans une revue
hal-05224563
v1
|
|
|
Isoform-specific RNA structure determination using Nano-DMS-MaP
Anne-Sophie Gribling-Burrer
,
Patrick Bohn
,
Redmond Smyth
Article dans une revue
hal-05362521
v1
|
|
|
Sequencing accuracy and systematic errors of nanopore direct RNA sequencing
Wang Liu-Wei
,
Wiep van der Toorn
,
Patrick Bohn
,
Martin Hölzer
,
Redmond Smyth
et al.
Article dans une revue
hal-05363230
v1
|
|
|
NEAT1 promotes genome stability via m<sup>6</sup>A methylation-dependent regulation of CHD4
Victoria Mamontova
,
Barbara Trifault
,
Anne-Sophie Gribling-Burrer
,
Patrick Bohn
,
Lea Boten
et al.
Article dans une revue
hal-05362438
v1
|
|
|
The conserved noncoding RNA ModT coordinates growth and virulence in Clostridioides difficile
Tina Lenče
,
Johannes Sulzer
,
Kilian Andress
,
Anne-Sophie Gribling-Burrer
,
Vanessa Lamm-Schmidt
et al.
Article dans une revue
hal-05362436
v1
|
|
|
Recruitment of multi-segment genomic RNAs by Bluetongue virus requires a preformed RNA network
Po-Yu Sung
,
Jody E Phelan
,
Dongsheng Luo
,
Raghavendran Kulasegaran-Shylini
,
Patrick Bohn
et al.
Article dans une revue
hal-05362448
v1
|
|
|
Cis -mediated interactions of the SARS-CoV-2 frameshift RNA alter its conformations and affect function
Lukas Pekarek
,
Matthias Zimmer
,
Anne-Sophie Gribling-Burrer
,
Stefan Buck
,
Redmond Smyth
et al.
Article dans une revue
hal-05362501
v1
|
|
|
Nano-DMS-MaP allows isoform-specific RNA structure determination
Patrick Bohn
,
Anne-Sophie Gribling-Burrer
,
Uddhav Ambi
,
Redmond Smyth
Article dans une revue
hal-05362507
v1
|
|
|
Advanced fluorescence microscopy in respiratory virus cell biology
Enyu Xie
,
Shazeb Ahmad
,
Redmond P Smyth
,
Christian Sieben
Article dans une revue
hal-05362701
v1
|
|
|
Sequential disruption of SPLASH-identified vRNA–vRNA interactions challenges their role in influenza A virus genome packaging
Celia Jakob
,
Gabriel L Lovate
,
Daniel Desirò
,
Lara Gießler
,
Redmond P Smyth
et al.
Article dans une revue
hal-04110802
v1
|
|
|
SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9
Nora Schmidt
,
Sabina Ganskih
,
Yuanjie Wei
,
Alexander Gabel
,
Sebastian Zielinski
et al.
Article dans une revue
hal-05362516
v1
|
|
|
Short- and long-range interactions in the HIV-1 5′ UTR regulate genome dimerization and packaging
Liqing Ye
,
Anne-Sophie Gribling-Burrer
,
Patrick Bohn
,
Anuja Kibe
,
Charlene Börtlein
et al.
Article dans une revue
hal-05362491
v1
|
|
|
The short isoform of the host antiviral protein ZAP acts as an inhibitor of SARS-CoV-2 programmed ribosomal frameshifting
Matthias Zimmer
,
Anuja Kibe
,
Ulfert Rand
,
Lukas Pekarek
,
Liqing Ye
et al.
Article dans une revue
hal-05362486
v1
|
|
|
RNA Structures and Their Role in Selective Genome Packaging
Liqing Ye
,
Uddhav Ambi
,
Marco Olguin-Nava
,
Anne-Sophie Gribling-Burrer
,
Shazeb Ahmad
et al.
Article dans une revue
hal-05363203
v1
|
|
|
RNA Structure—A Neglected Puppet Master for the Evolution of Virus and Host Immunity
Redmond P Smyth
,
Matteo Negroni
,
Andrew Lever
,
Johnson Mak
,
Julia Kenyon
Article dans une revue
(article de synthèse)
hal-02118729
v1
|
|
|
Structural and Functional Motifs in Influenza Virus RNAs
Damien Ferhadian
,
Maud Contrant
,
Anne Printz-Schweigert
,
Redmond P Smyth
,
Jean-Christophe Paillart
et al.
Article dans une revue
(article de synthèse)
hal-02118745
v1
|
|
|
In cell mutational interference mapping experiment (in cell MIME) identifies the 5′ polyadenylation signal as a dual regulator of HIV-1 genomic RNA production and packaging
Redmond P Smyth
,
Maureen R Smith
,
Anne-Caroline Jousset
,
Laurence Despons
,
Géraldine Laumond
et al.
Article dans une revue
hal-02141231
v1
|
|
|
A step forward understanding HIV-1 diversity
Redmond P Smyth
,
Matteo Negroni
Article dans une revue
hal-02294753
v1
|
|
|
The life-cycle of the HIV-1 Gag-RNA complex
Élodie Mailler
,
Serena Bernacchi
,
Roland Marquet
,
Jean-Christophe Paillart
,
Valerie Vivet Boudou
et al.
Article dans une revue
hal-05255386
v1
|
|
|
HIV-1 Pr55 Gag binds genomic and spliced RNAs with different affinity and stoichiometry
Serena Bernacchi
,
Ekram Abd El-Wahab
,
Noé Dubois
,
Marcel Hijnen
,
Redmond P Smyth
et al.
Article dans une revue
hal-02171331
v1
|
|
|
MIMEAnTo: profiling functional RNA in mutational interference mapping experiments
Maureen R Smith
,
Redmond P Smyth
,
Roland Marquet
,
Max von Kleist
Article dans une revue
hal-02294750
v1
|
|
|
HIV-1 Mutation and Recombination Rates Are Different in Macrophages and T-cells
Deborah Cromer
,
Timothy Schlub
,
Redmond P Smyth
,
Andrew Grimm
,
Abha Chopra
et al.
Article dans une revue
hal-02294111
v1
|
|
|
Mutational interference mapping experiment (MIME) for studying RNA structure and function.
Redmond P Smyth
,
Laurence Despons
,
Gong Huili
,
Serena Bernacchi
,
Marcel Hijnen
et al.
Article dans une revue
hal-05259396
v1
|
|
|
Properties of HIV-1 associated cholesterol in addition to raft formation are important for virus infection
David Hawkes
,
Kate Jones
,
Redmond P Smyth
,
Cândida Pereira
,
Robert Bittman
et al.
Article dans une revue
istex
hal-05362211
v1
|
|
|
Evaluation of anti-HIV-1 mutagenic nucleoside analogues.
Valérie Vivet-Boudou
,
Catherine Isel
,
Yazan El Safadi
,
Redmond P Smyth
,
Géraldine Laumond
et al.
Article dans une revue
hal-05258403
v1
|
|
|
15-20% of HIV substitution mutations are associated with recombination.
Timothy Schlub
,
Andrew Grimm
,
Redmond P Smyth
,
Deborah Cromer
,
Abha Chopra
et al.
Article dans une revue
hal-05259225
v1
|
|
|
Specific recognition of the HIV-1 genomic RNA by the Gag precursor.
Ekram Abd El-Wahab
,
Redmond P Smyth
,
Élodie Mailler
,
Serena Bernacchi
,
Valerie Vivet Boudou
et al.
Article dans une revue
hal-05260015
v1
|
|
|
Identifying recombination hotspots in the HIV-1 genome
Redmond Smyth
,
T Schlub
,
A Grimm
,
C Waugh
,
P Ellenberg
et al.
Article dans une revue
hal-05259627
v1
|
|
|
Intracellular Dynamics of HIV Infection
Janka Petravic
,
Paula Ellenberg
,
Ming-Liang Chan
,
Geza Paukovics
,
Redmond P Smyth
et al.
Article dans une revue
hal-05362139
v1
|
|
|
Improved quantification of HIV-1-infected CD4+ T cells using an optimised method of intracellular HIV-1 gag p24 antigen detection
Hongbing Yang
,
Elisabeth Yorke
,
Gemma Hancock
,
Genevieve Clutton
,
Nellia Sande
et al.
Article dans une revue
istex
hal-05258663
v1
|
|
|
A functional sequence-specific interaction between influenza A virus genomic RNA segments
Cyrille Gavazzi
,
Matthieu Yver
,
Catherine Isel
,
Redmond P Smyth
,
Manuel Rosa-Calatrava
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (41), pp.16604-16609. ⟨10.1073/pnas.1314419110⟩
Article dans une revue
hal-05258420
v1
|
|
|
The origin of genetic diversity in HIV-1
Redmond Smyth
,
Miles Davenport
,
Johnson Mak
Article dans une revue
istex
hal-04306411
v1
|
|
|
Early Events of HIV-1 Infection: Can Signaling be the Next Therapeutic Target?
Kate Jones
,
Redmond Smyth
,
Cândida Pereira
,
Paul Cameron
,
Sharon Lewin
et al.
Article dans une revue
istex
hal-05362980
v1
|
|
|
8-Modified-2'-Deoxyadenosine Analogues Induce Delayed Polymerization Arrest during HIV-1 Reverse Transcription
Valérie Vivet-Boudou
,
Catherine Isel
,
Marwan Sleiman
,
Redmond Smyth
,
Nouha Ben Gaied
et al.
Article dans une revue
hal-05254494
v1
|
|
|
Accurately Measuring Recombination between Closely Related HIV-1 Genomes
Timothy Schlub
,
Redmond Smyth
,
Andrew Grimm
,
Johnson Mak
,
Miles Davenport
Article dans une revue
hal-05362681
v1
|
|
|
Reducing chimera formation during PCR amplification to ensure accurate genotyping
Redmond P Smyth
,
T.E. Schlub
,
A. Grimm
,
V. Venturi
,
A. Chopra
et al.
Article dans une revue
istex
hal-05362452
v1
|
|
|
The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA.
Cameron P Keating
,
Melissa K Hill
,
David J Hawkes
,
Redmond P Smyth
,
Catherine Isel
et al.
Article dans une revue
hal-00372893
v1
|