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Rémi Choquet



Highly pathogenic avian influenza affects vultures’ movements and breeding output

Olivier Duriez , Yohan Sassi , Chloé Le Gall-Ladevèze , Léa Giraud , Robert Straughan
Current Biology - CB, 2023, 33 (17), pp.3766-3774. ⟨10.1016/j.cub.2023.07.061⟩
Journal articles hal-04189620v1
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Natal colony influences age-specific movement patterns of the Yellow-legged gull (Larus michahellis)

Charly Souc , Nicolas Sadoul , Thomas Blanchon , Marion Vittecoq , Christophe Pin
Movement Ecology, 2023, 11 (1), pp.11. ⟨10.1186/s40462-023-00375-4⟩
Journal articles hal-04123364v1
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Temporal dynamics of antibody level against Lyme disease bacteria in roe deer: Tale of a sentinel?

Valentin Ollivier , Rémi Choquet , Amandine Gamble , Matthieu Bastien , Benoit Combes
Ecology and Evolution, 2023, 13 (8), pp.e10414. ⟨10.1002/ece3.10414⟩
Journal articles hal-04187987v1
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Phenotypic evolution of SARS-CoV-2: a statistical inference approach

Wakinyan Benhamou , Sébastien Lion , Rémi Choquet , Sylvain Gandon
Evolution - International Journal of Organic Evolution, 2023, 77 (10), pp.2213-2223. ⟨10.1093/evolut/qpad133⟩
Journal articles hal-04239260v1
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Are behaviour and stress‐related phenotypes in urban birds adaptive?

Aude Caizergues , Arnaud Grégoire , Rémi Choquet , Samuel Perret , Anne Charmantier
Journal of Animal Ecology, 2022, 91 (8), pp.1627-1641. ⟨10.1111/1365-2656.13740⟩
Journal articles hal-03821524v1
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Sharing wintering grounds does not synchronize annual survival in a high Arctic seabird, the little auk

S Descamps , B Merkel , H Strøm , Rémi Choquet , H Steen
Marine Ecology Progress Series, 2021, SEA, ⟨10.3354/meps13400⟩
Journal articles hal-03017418v1
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Decrease in social cohesion in a colonial seabird under a perturbation regime

Meritxell Genovart , Olivier O. Gimenez , Albert Bertolero , Rémi Choquet , Daniel Oro
Scientific Reports, 2020, 10 (18720), ⟨10.1038/s41598-020-75259-3⟩
Journal articles hal-03020416v1
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Evaluating Functional Dispersal in a Nest Ectoparasite and Its Eco-Epidemiological Implications

Amalia Rataud , Marlène Dupraz , Céline Toty , Thomas Blanchon , Marion Vittecoq
Frontiers in Veterinary Science, 2020, 7, ⟨10.3389/fvets.2020.570157⟩
Journal articles hal-03388412v1

Sex‐specific effects of fisheries and climate on the demography of sexually dimorphic seabirds

Dimas Gianuca , Stephen C Votier , Deborah Pardo , Andrew G Wood , Richard B Sherley
Journal of Animal Ecology, 2019, 88 (9), pp.1366-1378. ⟨10.1111/1365-2656.13009⟩
Journal articles hal-02161559v1
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Consequences of past and present harvest management in a declining flyway population of common eiders Somateria mollissima

Rune S. Tjørnløv , Roger Pradel , Remi Choquet , Thomas Kjaer Christensen , Morten Frederiksen
Ecology and Evolution, 2019, 9 (22), pp.12515-12530. ⟨10.1002/ece3.5707⟩
Journal articles hal-02281252v2
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Impact of long-term behavioural studies in the wild: the blue petrel, Halobaena caerulea, case at Kerguelen

Matthieu Berges , Rémi Choquet , Francesco Bonadonna
Animal Behaviour, 2019, 151, pp.53-65. ⟨10.1016/j.anbehav.2019.03.004⟩
Journal articles hal-02285159v1
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Evaluating functional dispersal and its eco-epidemiological implications in a nest ectoparasite

Amalia Rataud , Marlène Dupraz , Céline Toty , Thomas Blanchon , Marion Vittecoq
Peer Community In Ecology, 2019, Zenodo 2573076 (ver3), ⟨10.5281/zenodo.2573075⟩
Journal articles hal-02859934v1
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Arctic climate change and pollution impact little auk foraging and fitness across a decade

Françoise Amélineau , David Grémillet , Ann Harding , Wojciech Walkusz , Rémi Choquet
Scientific Reports, 2019, 9, ⟨10.1038/s41598-018-38042-z⟩
Journal articles hal-01977919v1

Data used for estimating colonisation, dormancy and germination of 38 weed species. Related to the paper "A general method for estimating seed dormancy and colonisation in annual plants from the observation of existing flora" by Matthieu Pluntz, Sebastian Le Coz, Nathalie Peyrard, Roger Pradel, Rémi Choquet, Pierre-Olivier Cheptou

Mathieu Pluntz , Sebastian Lecoz , Nathalie Dubois Peyrard Peyrard , Roger Pradel , Pierre-Olivier Cheptou
Ecology Letters, inPress
Journal articles hal-01801122v1
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Dermal mycobacteriosis and warming sea surface temperatures are associated with elevated mortality of striped bass in Chesapeake Bay

Maya L. Groner , John M. Hoenig , Roger Pradel , Rémi Choquet , Wolfgang K. Vogelbein
Ecology and Evolution, 2018, 8 (18), pp.9384-9397. ⟨10.1002/ece3.4462⟩
Journal articles hal-01911547v1

Mapping and explaining wolf recolonization in France using dynamic occupancy models and opportunistic data

Julie Louvrier , Christophe Duchamp , Valentin Lauret , Eric Marboutin , Sarah Cubaynes
Ecography, 2018, 41 (4), pp.647-660. ⟨10.1111/ecog.02874⟩
Journal articles hal-01997206v1

A general method for estimating seed dormancy and colonisation in annual plants from the observation of existing flora

Matthieu Pluntz , Sebastian Le Coz , Nathalie Peyrard , Roger Pradel , Rémi Choquet
Ecology Letters, 2018, 21 (9), pp.1311-1318. ⟨10.1111/ele.13097⟩
Journal articles hal-01911555v1

Survival estimates strongly depend on capture-recapture designs in a disturbed environment inducing dispersal

Aurore Ponchon , Rémi Choquet , Jérémy Tornos , Karen Mccoy , Torkild Tveraa
Ecography, 2018, 41 (12), pp.2055-2066. ⟨10.1111/ecog.03334⟩
Journal articles hal-02265944v1

R2ucare: An R package to perform goodness-of-fit tests for capture-recapture models

Olivier Gimenez , Jean-Dominique Lebreton , Rémi Choquet , Roger Pradel
Methods in Ecology and Evolution, 2018, 9 (7), pp.1749-1754. ⟨10.1111/2041-210X.13014⟩
Journal articles hal-02329897v1

Impact of disease on the survival of three commercially fished species

John M. Hoenig , Maya L. Groner , Matthew W. Smith , Wolfgang K. Vogelbein , David M. Taylor
Ecological Applications, 2017, 27 (7), pp.2116-2127. ⟨10.1002/eap.1595⟩
Journal articles hal-01911558v1

Disentangling the role of seed bank and dispersal in plant metapopulation dynamics using patch occupancy surveys

Federico Manna , Roger Pradel , Rémi Choquet , Hélène Fréville , Pierre-Olivier Cheptou
Ecology, 2017, 98 (10), pp.2662-2672. ⟨10.1002/ecy.1960⟩
Journal articles hal-02924171v1

Transient state estimation using continuous-time processes applied to opportunistic capture-recapture data

Rémi Choquet , Alexandre Garnier , Edem Awuve , Aurélien Besnard
Ecological Modelling, 2017, 361, pp.157-163. ⟨10.1016/j.ecolmodel.2017.08.001⟩
Journal articles hal-02625449v1

Advances in methods for estimating stopover duration for migratory species using capture-recapture data

S. Guérin , D. Picard , Rémi Choquet , Aurélien Besnard
Ecological Applications, 2017, 27 (5), pp.1594-1604. ⟨10.1002/eap.1551⟩
Journal articles hal-01601427v1
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Evidence of reduced individual heterogeneity in adult survival of long-lived species

Guillaume Péron , Jean-Michel Gaillard , Christophe Barbraud , Christophe Bonenfant , A. Charmantier
Evolution, 2016, 70 (12), pp.2909-2914. ⟨10.1111/evo.13098⟩
Journal articles hal-01510958v1
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Does your species have memory? Analyzing capture-recapture data with memory models

Diana J. Cole , Byron J. T. Morgan , Rachel S. Mccrea , Roger Pradel , Olivier Gimenez
Ecology and Evolution, 2014, 4 (11), pp.2124-2133. ⟨10.1002/ece3.1037⟩
Journal articles hal-01911589v1
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Methods for studying cause-specific senescence in the wild

David N Koons , Marlène Gamelon , Jean-Michel Gaillard , Lise M Aubry , Robert F Rockwell
Methods in Ecology and Evolution, 2014, 5 (9), pp.924 - 933. ⟨10.1111/2041-210x.12239⟩
Journal articles hal-03282076v1

Identifying links between vital rates and environment: a toolbox for the applied ecologist

Morten Frederiksen , Jean-Dominique Lebreton , Roger Pradel , Rémi Choquet , Olivier Gimenez
Journal of Applied Ecology, 2014, 51 (1), pp.71-81. ⟨10.1111/1365-2664.12172⟩
Journal articles hal-01911588v1
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Statistical ecology comes of age

Olivier Gimenez , Stephen T. Buckland , Byron J.T. Morgan , Nicolas Bez , Sophie Bertrand
Biology Letters, 2014, 10 (20140698), ⟨10.1098/rsbl.2014.0698⟩
Journal articles hal-01123399v1
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Applications of hidden hybrid Markov/semi-Markov models: from stopover duration to breeding success dynamics

Rémi Choquet , Arnaud Béchet , Yann Guédon
Ecology and Evolution, 2014, 4 (6), pp.817 - 826. ⟨10.1002/ece3.962⟩
Journal articles hal-01084498v1

Fitting occupancy models with E-SURGE: Hidden Markov modelling of presence-absence data

Olivier Gimenez , Laetitia Blanc , Aurélien Besnard , Roger Pradel , Paul F. Doherty
Methods in Ecology and Evolution, 2014, 5 (6), pp.592-597. ⟨10.1111/2041-210X.12191⟩
Journal articles hal-01911593v1

Estimating demographic parameters from capture-recapture data with dependence among individuals within clusters

Rémi Choquet , Ana Sanz-Aguilar , Blandine Doligez , Erika Nogué , Roger Pradel
Methods in Ecology and Evolution, 2013, 4 (5), pp.474-482. ⟨10.1111/2041-210X.12030⟩
Journal articles hal-01911601v1

Inferring seed bank from hidden Markov models: new insights into metapopulation dynamics in plants

Hélène Fréville , Rémi Choquet , Roger Pradel , P.-O. Cheptou
Journal of Ecology, 2013, 101 (6), pp.1572-1580. ⟨10.1111/1365-2745.12141⟩
Journal articles hal-01911603v1
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A multievent approach to estimating pair fidelity and heterogeneity in state transitions

A. Culina , S. Lachish , Roger Pradel , Rémi Choquet , B.C. Sheldon
Ecology and Evolution, 2013, 3 (13), pp.4326-4338. ⟨10.1002/ece3.729⟩
Journal articles hal-01911595v1

Estimating stop over duration in the presence of trap-effects

Rémi Choquet , Yann Guédon , Aurélien Besnard , Matthieu Guillemain , Roger Pradel
Ecological Modelling, 2013, 250, pp.111-118. ⟨10.1016/j.ecolmodel.2012.11.002⟩
Journal articles hal-00828839v1
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Breeding Experience Might Be a Major Determinant of Breeding Probability in Long-Lived Species: The Case of the Greater Flamingo

Roger Pradel , Rémi Choquet , A. Bechet
PLoS ONE, 2012, 7 (12), pp.e51016. ⟨10.1371/journal.pone.0051016⟩
Journal articles hal-00655507v2

Comparing the seasonal survival of resident and migratory oystercatchers: carry-over effects of habitat quality and weather conditions

Olivier Duriez , Bruno Ens , Rémi Choquet , Roger Pradel , Marcel Klaassen
Oikos, 2012, 121 (6), pp.862-873. ⟨10.1111/j.1600-0706.2012.20326.x⟩
Journal articles hal-02126293v1

Carry-over effects of spring hunt and climate on recruitment to the natal colony in a migratory species

Cédric Juillet , Rémi Choquet , Gilles Gauthier , Josée Lefebvre , Roger Pradel
Journal of Applied Ecology, 2012, 49 (6), pp.1237-1246. ⟨10.1111/j.1365-2664.2012.02199.x⟩
Journal articles hal-02126297v1

Spatial heterogeneity in mortality and its impact on the population dynamics of Eurasian woodcocks

Guillaume Peron , Yves Ferrand , Rémi Choquet , Roger Pradel , François Gossmann
Population Ecology, 2012, 54 (2), pp.305-312. ⟨10.1007/s10144-012-0309-6⟩
Journal articles hal-02126301v1
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Capture-recapture population growth rate as a robust tool against detection heterogeneity for population management

Lucile Marescot , Roger Pradel , Christophe Duchamp , Sarah Cubaynes , Eric Marboutin
Ecological Applications, 2011, 21, pp.2898 - 2907. ⟨10.1890/10-2321.1⟩
Journal articles hal-02126314v1

Estimating Population Growth Rate From Capture–Recapture Data in Presence of Capture Heterogeneity

Roger Pradel , Rémi Choquet , Mauricio A Lima , Joseph Merritt , Laurent Crespin
Journal of Agricultural, Biological, and Environmental Statistics, 2010, 15 (2), pp.248-258. ⟨10.1007/s13253-009-0008-8⟩
Journal articles hal-02126326v1

Assessing whether mortality is additive using marked animals: a Bayesian state–space modeling approach

Sabrina Servanty , Rémi Choquet , Eric Baubet , Serge Brandt , Jean-Michel Gaillard
Ecology, 2010, 91 (7), pp.1916-1923. ⟨10.1890/09-1931.1⟩
Journal articles hal-02662609v1

Experience-dependent natal philopatry of breeding greater flamingos

Özge Balkiz , Arnaud Béchet , Lauriane Rouan , Rémi Choquet , Christophe Germain
Journal of Animal Ecology, 2010, 79 (5), pp.1045-1056. ⟨10.1111/j.1365-2656.2010.01721.x⟩
Journal articles hal-02126322v1

Capture-recapture models with heterogeneity to study survival senescence in the wild

Guillaume Péron , Pierre-André Crochet , Rémi Choquet , Roger Pradel , Jean-Dominique Lebreton
Oikos, 2010, 119 (3), pp.524 - 532. ⟨10.1111/j.1600-1706.2009.17882.x⟩
Journal articles hal-02126325v1

Importance of Accounting for Detection Heterogeneity When Estimating Abundance: the Case of French Wolves

Sarah Cubaynes , Roger Pradel , Rémi Choquet , Christophe Duchamp , Jean-Michel Gaillard
Conservation Biology, 2010, 24 (2), pp.621-626. ⟨10.1111/j.1523-1739.2009.01431.x⟩
Journal articles hal-00539464v1
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U-CARE: Utilities for performing goodness of fit tests and manipulating CApture-REcapture data

Rémi Choquet , Jean-Dominique Lebreton , Anne-Marie Reboulet , Roger Pradel , Olivier Gimenez
Ecography, 2009, 32 (6), pp.1071-1074. ⟨10.1111/j.1600-0587.2009.05968.x⟩
Journal articles hal-03515210v1

Estimating survival and movements using both live and dead recoveries: a case study of oystercatchers confronted with habitat change

Olivier Duriez , Stein A Saether , Bruno J Ens , Rémi Choquet , Roger Pradel
Journal of Applied Ecology, 2009, 46 (1), pp.144-153. ⟨10.1111/j.1365-2664.2008.01592.x⟩
Journal articles hal-02126329v1

Is heterogeneity of catchability in capture-recapture studies a mere sampling artifact or a biologically relevant feature of the population?

Laurent Crespin , Rémi Choquet , Mauricio Lima , Merritt J. , Roger Pradel
Population Ecology, 2008, 50 (3), pp.247-256. ⟨10.1007/s10144-008-0090-8⟩
Journal articles hal-02126334v1

Estimation of sex-specific survival with uncertainty in sex assessment

Roger Pradel , Lory Maurin-Bernier , Olivier Gimenez , Meritxell Genovart , Rémi Choquet
Canadian Journal of Statistics, 2008, 36 (1), pp.29-42. ⟨10.1002/cjs.5550360105⟩
Journal articles hal-02126346v1

Recruitment processes in long-lived species with delayed maturity: estimating key demographic parameters

Stéphanie Jenouvrier , Giacomo Tavecchia , Jean-Claude Thibault , Rémi Choquet , Vincent Bretagnolle
Oikos, 2008, 117, pp.620-628. ⟨10.1111/j.0030-1299.2008.16394.x⟩
Journal articles hal-00323825v1
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Olivier Gimenez , Vivien Rossi , Rémi Choquet , Camille Dehais , Blaise Doris
Ecological Modelling, 2007, 206 (3-4), pp.431-438. ⟨10.1016/j.ecolmodel.2007.03.040⟩
Journal articles hal-03515273v1

Larch- and pine-feeding host races of the larch bud moth (Zeiraphera diniana) have cyclic and synchronous population fluctuations

Laurent Dormont , Werner Baltensweiler , Rémi Choquet , Alain Roques
Oikos, 2006, 115 (2), pp.299-307. ⟨10.1111/j.2006.0030-1299.15010.x⟩
Journal articles hal-02659142v1

Larch- and pine-feeding host races of the larch bud moth ( Zeiraphera diniana) have cyclic and synchronous population fluctuations.

Laurent Dormont , Laurent Baltensweiler , Rémi Choquet , Alain Roques
Oikos, 2006, 115 (2), p.299-307. ⟨10.1111/j.2006.0030-1299.15010.x⟩
Journal articles hal-03061372v1
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Estimating clutch frequency in the sea turtle Dermochelys coriacea using stopover duration

Philippe Rivalan , Roger Pradel , Rémi Choquet , Marc Girondot , Anne-Caroline Prévot-Julliard
Marine Ecology Progress Series, 2006, 317, pp.285-295. ⟨10.3354/meps317285⟩
Journal articles hal-02126355v1

Trade-off between current reproductive effort and delay to next reproduction in the leatherback sea turtle

Philippe Rivalan , Anne-Caroline Prevot-Julliard , Rémi Choquet , Roger Pradel , Bertrand Jacquemin
Oecologia, 2005, 145 (4), pp.564-574. ⟨10.1007/s00442-005-0159-4⟩
Journal articles hal-02126363v1

Efficient profile-likelihood confidence intervals for capture-recapture models

Olivier Gimenez , Rémi Choquet , Laurent Lamor , Paul Scofield , David Fletcher
Journal of Agricultural, Biological, and Environmental Statistics, 2005, 10 (2), pp.184-196. ⟨10.1198/108571105X46462⟩
Journal articles hal-02126356v1

Estimating variability from capture-recapture data using the SAEM algorithm

Maud Delattre , Rémi Choquet
Isec (International Statistical Ecology Conference), 2014, Montpellier, France
Conference papers hal-04083859v1

Le comportement explique la démographie

Roger Pradel , Rémi Choquet , Arnaud Béchet
Arnaud, Nicolas and Jouve, Bertrand and Müller, Jean-Pierre. Systèmes complexes: de la biologie aux territoires, Agropolis International, pp.34, 2018
Book sections hal-01911551v1

Modèles de mélange en capture-recapture

Lauriane Rouan , Sarah Cubaynes , Christophe Duchamp , Christian Miquel , Anne-Marie Reboulet
Droesbeke; Jean-Jacques and Saporta; Gilbert and Thomas-Agnan; Christine. Modèles à variables latentes et modèles de mélange, 13, Technip, pp.265-272, 2013, 9782710809593
Book sections hal-01911609v1

Program E-Surge: A Software Application for Fitting Multievent Models

Rémi Choquet , Lauriane Rouan , Roger Pradel
Modeling Demographic Processes In Marked Populations, Springer, pp.845-865, 2009, ⟨10.1007/978-0-387-78151-8_39⟩
Book sections hal-02927999v1