Rita Rebollo

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Documents

Publications

	Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps Ange Lorenzi , Fabrice Legeai , Véronique Jouan , Pierre-Alain Girard , Michael R Strand PLoS Pathogens, 2024, 20 (4), pp.e1011980. ⟨10.1371/journal.ppat.1011980⟩ Journal articles hal-04572197v1
	Evaluation of non-invasive dsRNA delivery methods for the development of RNA interference in the Asian tiger mosquito Aedes albopictus Maxime Girard , Vincent Berthaud , Edwige Martin , Laurent Vallon , Rita Rebollo Journal of Pest Science, 2024, ⟨10.1007/s10340-024-01779-w⟩ Journal articles hal-04632865v1
	Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues Rita Rebollo , Pierre Gerenton , Eric Cumunel , Arnaud Mary , François Sabot Peer Community Journal, 2024, 4 (e89), ⟨10.24072/pcjournal.457⟩ Journal articles hal-04285238v1
	A quantitative, genome-wide analysis in Drosophila reveals transposable elements’ influence on gene expression is species-specific Marie Fablet , Judit Salces-Ortiz , Angelo Jacquet , Bianca Menezes , Corentin Dechaud Genome Biology and Evolution, 2023, 15 (9), pp.evad160. ⟨10.1093/gbe/evad160⟩ Journal articles hal-04195964v1
	Transcriptomic-based selection of reference genes for quantitative real-time PCR in an insect endosymbiotic model Agnès Vallier , Elisa Dell’aglio , Mariana Galvão Ferrarini , Ophélie Hurtado , Carole Vincent-Monégat Frontiers in Ecology and Evolution, 2023, 11, pp.1152183. ⟨10.3389/fevo.2023.1152183⟩ Journal articles hal-04154026v1
	A comparative study revealed hyperspectral imaging as a potential standardized tool for the analysis of cuticle tanning over insect development Virginie Lacotte , Elisa Dell’aglio , Sergio Peignier , Fadéla Benzaoui , Abdelaziz Heddi Heliyon, 2023, 9 (3), pp.e13962. ⟨10.1016/j.heliyon.2023.e13962⟩ Journal articles hal-04045314v1
	Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity Mariana Galvão Ferrarini , Agnès Vallier , Elisa Dell’aglio , Séverine Balmand , Carole Vincent-Monégat Frontiers in Physiology, 2023, 14, pp.1142513. ⟨10.3389/fphys.2023.1142513⟩ Journal articles hal-04045330v1
	Weevil Carbohydrate Intake Triggers Endosymbiont Proliferation: A Trade-Off between Host Benefit and Endosymbiont Burden Elisa Dell’aglio , Virginie Lacotte , Sergio Peignier , Isabelle Rahioui , Fadéla Benzaoui mBio, 2023, ⟨10.1128/mbio.03333-22⟩ Journal articles hal-04045309v1
	ChimeraTE: a pipeline to detect chimeric transcripts derived from genes and transposable elements Daniel Oliveira , Marie Fablet , Anaïs Larue , Agnès Vallier , Claudia Carareto Nucleic Acids Research, inPress, 51 (18), pp.9764-9784. ⟨10.1093/nar/gkad671⟩ Journal articles hal-04195961v1
	Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp. Mariana Galvão Ferrarini , Agnès Vallier , Carole Vincent-Monégat , Elisa Dell’aglio , Benjamin Gillet Microbiome, 2023, 11 (1), pp.274. ⟨10.1186/s40168-023-01714-8⟩ Journal articles hal-04345509v1
	Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana Galvão Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand , Carole Vincent-Monégat Microbiome, 2022, 10 (1), pp.156. ⟨10.1186/s40168-022-01334-8⟩ Journal articles hal-03839252v1
	Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration Thomas Clapes , Aikaterini Polyzou , Pia Prater , A Sagar , Antonio Morales-Hernández Nature Cell Biology, 2021, 23 (7), ⟨10.1038/s41556-021-00707-9⟩ Journal articles hal-03285370v1
	Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis Mariana G Ferrarini , Avantika Lal , Rita Rebollo , Andreas J Gruber , Andrea Guarracino Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-021-02095-0⟩ Journal articles hal-03237937v1
	The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩ Journal articles hal-03627264v1
	Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice Rita Rebollo , Mariana Galvao Ferrarini , Liane Gagnier , Ying Zhang , Ardian Ferraj Viruses, 2020, 12 (7), pp.783. ⟨10.3390/v12070783⟩ Journal articles hal-02919047v1
	Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains Marie Fablet , Angelo Jacquet , Rita Rebollo , Annabelle A. Haudry , Carine Rey G3, 2019, 9 (3), pp.855-865. ⟨10.1534/g3.118.200789⟩ Journal articles hal-02004384v1
	On the role of H3.3 in retroviral silencing Gernot Wolf , Rita Rebollo , Mohammad M. Karimi , Adam D. Ewing , Rui Kamada Nature, 2017, 548 (7665), pp.E1-E6. ⟨10.1038/nature23277⟩ Journal articles hal-01594928v1
	Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma Frances E. Lock , Rita Rebollo , Katharine Miceli-Royer , Liane Gagnier , Sabrina Kuah Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (34), pp.E3534-E3543. ⟨10.1073/pnas.1405507111⟩ Journal articles hal-02631106v1
	Transposable elements: an abundant and natural source of regulatory sequences for host genes Rita Rebollo , Mark T. Romanish , Dixie L. Mager Annual Review of Genetics, 2012, 46, pp.21-42. ⟨10.1146/annurev-genet-110711-155621⟩ Journal articles hal-02652491v1
	A snapshot of histone modifications within transposable elements in Drosophila wild type strains. Rita Rebollo , Béatrice Horard , Flora Begeot , Marion Delattre , Eric Gilson PLoS ONE, 2012, 7 (9), pp.1-7. ⟨10.1371/journal.pone.0044253⟩ Journal articles hal-00850321v1
	tirant, a newly discovered active endogenous retrovirus in Drosophila simulans. Abdou Akkouche , Rita Rebollo , Nelly Burlet , Caroline Esnault , Sonia Martinez Journal of Virology, 2012, 86 (7), pp.3675-3681. ⟨10.1128/JVI.07146-11⟩ Journal articles hal-00763499v1
	C-GATE - catalogue of genes affected by transposable elements Rita Rebollo , Sharareh Farivar , Dixie L. Mager Mobile DNA, 2012, 3 (1), pp.1-5. ⟨10.1186/1759-8753-3-9⟩ Journal articles hal-02645414v1
	Transposable elements: not as quiet as a mouse Rita Rebollo , Ying Zhang , Dixie L. Mager Genome Biology, 2012, 13 (6), ⟨10.1186/gb-2012-13-6-159⟩ Journal articles hal-02652763v1
	A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans. Cristina Vieira , Marie Fablet , Emmanuelle Lerat , Matthieu Boulesteix , Rita Rebollo Journal of Environmental Radioactivity, 2012, 113, pp.83-86. ⟨10.1016/j.jenvrad.2012.04.001⟩ Journal articles hal-00763500v1
	Epigenetic interplay between mouse endogenous retroviruses and host genes Rita Rebollo , Katharine Miceli-Royer , Ying Zhang , Sharareh Farivar , Liane Gagnier Genome Biology, 2012, 13 (10), pp.1-15. ⟨10.1186/gb-2012-13-10-r89⟩ Journal articles hal-02649122v1
	Placenta-specific expression of the interleukin-2 (IL-2) receptor beta subunit from an endogenous retroviral promoter Carla J. Cohen , Rita Rebollo , Sonja Babovic , Elizabeth L. Dai , Wendy P. Robinson Journal of Biological Chemistry, 2011, 286 (41), pp.35543-35552. ⟨10.1074/jbc.M111.227637⟩ Journal articles hal-02649119v1
	Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms Rita Rebollo , Mohammad M. Karimi , Misha Bilenky , Liane Gagnier , Katharine Miceli-Royer PLoS Genetics, 2011, 7 (9), pp.1-14. ⟨10.1371/journal.pgen.1002301⟩ Journal articles hal-02651240v1
	Jumping genes and epigenetics: Towards new species. Rita Rebollo , Béatrice Horard , Benjamin Hubert , Cristina Vieira Gene, 2010, 454 (1-2), pp.1-7. ⟨10.1016/j.gene.2010.01.003⟩ Journal articles hal-00850384v1
	Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila M. Fablet , E. Lerat , R. Rebollo , B. Horard , N. Burlet FASEB Journal, 2009, 23, pp.54-62 Journal articles hal-00428323v1
	Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila. Marie Fablet , Emmanuelle Lerat , Rita Rebollo , Béatrice Horard , Nelly Burlet FASEB Journal, 2009, 23 (5), pp.1482-9. ⟨10.1096/fj.08-123513⟩ Journal articles hal-00850396v1
	Losing helena: The extinction of a drosophila line-like element Rita Rebollo , Emmanuelle Lerat , Liliana Lopez Kleine , Christian Biémont , Cristina Vieira BMC Genomics, 2008, 9, pp.1-11. ⟨10.1186/1471-2164-9-149⟩ Journal articles hal-02668006v1
	The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes Marie Fablet , Rita Rebollo , Christian Biémont , Cristina Vieira Gene, 2007, 390 (1-2), pp.84-91. ⟨10.1016/j.gene.2006.08.005⟩ Journal articles hal-02665818v1

	Étude des peptides antimicrobiens dans la symbiose mutualiste entre le charançon des céréales Sitophilus oryzae et la bactérie endosymbiotique Sodalis pierantonius Carole Vincent-Monégat , Galambos N. , Nicolas Parisot , Agnès Vallier , Severine Balmand 10ème Journées Réseau MuFoPAM, Oct 2023, Lille, France Conference papers hal-04530729v1

	High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae andSodalis pierantonius endosymbiotic association Nicolas Parisot , Mariana Galvão Ferrarini , Clément Goubert , Carlos Vargas-Chávez , Agnès Vallier ISS 2022 - 10th Congress of the International Symbiosis Society, Jul 2022, Lyon, France Conference poster hal-03810657v1
	Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis Carlos Vargas-Chavez , Nicolas Parisot , C. Goubert , Patrice Baa-Puyoulet , Severine Balmand VI Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma de Mallorca, Spain Conference poster hal-03514015v1
	The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis Carlos Vargas-Chavez , Nicolas Parisot , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France Conference poster hal-03506786v1

	Epigenetics and genotypic variation Miriam Merenciano , Anaïs Larue , Cristian Groza , Cristina Vieira , Rita Rebollo On Epigenetics and Evolution, Elsevier, pp.119-151, 2024, ⟨10.1016/B978-0-443-19051-3.00006-1⟩ Book sections hal-04632875v1
	Methylated DNA immunoprecipitation analysis of mammalian endogenous retroviruses Rita Rebollo , Dixie L. Mager Transposons and Retrotransposons : Methods and protocols, 1400, Humana Press, 2016, Methods in Molecular Biology, 978-1-4939-3370-9 978-1-4939-3372-3. ⟨10.1007/978-1-4939-3372-3_23⟩ Book sections hal-02794282v1

	The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot , Carlos Vargas-Chavez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand 2024 Preprints, Working Papers, ... hal-04706472v1
	Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps Ange Lorenzi , Fabrice Legeai , Véronique Jouan , Pierre-Alain Girard , Michael R Strand 2024 Preprints, Working Papers, ... hal-04558930v1
	Global analysis of human SARS-CoV-2 infection and host-virus interaction Mariana Ferrarini , Vanessa Aguiar-Pulido , Eric Dawson , Andrea Guarracino , Andreas Gruber 2022 Preprints, Working Papers, ... hal-03514119v1
	The genome of the cereal pest Sitophilus oryzae : a transposable element haven Nicolas Parisot , Carlos Vargas-Chavez , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand 2021 Preprints, Working Papers, ... hal-03320933v1

	TE variation in natural populations of Drosophila : copy number, transcription and chromatin state Rita Rebollo Agricultural sciences. Université Claude Bernard - Lyon I, 2009. English. ⟨NNT : 2009LYO10186⟩ Theses tel-00580831v1

Rita Rebollo

Publications

Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps

Evaluation of non-invasive dsRNA delivery methods for the development of RNA interference in the Asian tiger mosquito Aedes albopictus

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues

A quantitative, genome-wide analysis in Drosophila reveals transposable elements’ influence on gene expression is species-specific

Transcriptomic-based selection of reference genes for quantitative real-time PCR in an insect endosymbiotic model

A comparative study revealed hyperspectral imaging as a potential standardized tool for the analysis of cuticle tanning over insect development

Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity

Weevil Carbohydrate Intake Triggers Endosymbiont Proliferation: A Trade-Off between Host Benefit and Endosymbiont Burden

ChimeraTE: a pipeline to detect chimeric transcripts derived from genes and transposable elements

Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration

Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice

Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

On the role of H3.3 in retroviral silencing

Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma

Transposable elements: an abundant and natural source of regulatory sequences for host genes

A snapshot of histone modifications within transposable elements in Drosophila wild type strains.

tirant, a newly discovered active endogenous retrovirus in Drosophila simulans.

C-GATE - catalogue of genes affected by transposable elements

Transposable elements: not as quiet as a mouse

A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans.

Epigenetic interplay between mouse endogenous retroviruses and host genes

Placenta-specific expression of the interleukin-2 (IL-2) receptor beta subunit from an endogenous retroviral promoter

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

Jumping genes and epigenetics: Towards new species.

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.

Losing helena: The extinction of a drosophila line-like element

The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes

Étude des peptides antimicrobiens dans la symbiose mutualiste entre le charançon des céréales Sitophilus oryzae et la bactérie endosymbiotique Sodalis pierantonius

High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae andSodalis pierantonius endosymbiotic association

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Epigenetics and genotypic variation

Methylated DNA immunoprecipitation analysis of mammalian endogenous retroviruses

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps

Global analysis of human SARS-CoV-2 infection and host-virus interaction

The genome of the cereal pest Sitophilus oryzae : a transposable element haven

TE variation in natural populations of Drosophila : copy number, transcription and chromatin state